
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/4429081/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LUSC-TP/4397342/LUSC-TP.clin.merged.picked.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_clinicalDataPicker/LUSC-TP/4397342/LUSC-TP.clin.merged.picked.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUSC-TP/4429081/transformed.cor.cli.txt"

nPatients in clinical file=394, in cluster file=489, common to both=391
[1]  80 391
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               75               316 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               75               316 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              162               229 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              162               229 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              166               225 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              166               225 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              107               284 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              107               284 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               83               308 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               83               308 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              243               148 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              243               148 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               23               368 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               23               368 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               15               376 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               15               376 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              239               152 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              239               152 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               71               320 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               71               320 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               85               306 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               85               306 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               74               317 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               74               317 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              184               207 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              184               207 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              173               218 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              173               218 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              108               283 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              108               283 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              199               192 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              199               192 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               43               348 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               43               348 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               71               320 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               71               320 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                57                334 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                57                334 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                33                358 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                33                358 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                54                337 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                54                337 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                66                325 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                66                325 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               178                213 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               178                213 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               120                271 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               120                271 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                29                362 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                29                362 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                93                298 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                93                298 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                87                304 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                87                304 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                65                326 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                65                326 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                65                326 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                65                326 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                54                337 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                54                337 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               119                272 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               119                272 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               120                271 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               120                271 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                92                299 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                92                299 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                83                308 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                83                308 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               122                269 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               122                269 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               198                193 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               198                193 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               192                199 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               192                199 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                40                351 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                40                351 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               174                217 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               174                217 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               62               329 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               62               329 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              109               282 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              109               282 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               39               352 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               39               352 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               15               376 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               15               376 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               361 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               30               361 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              242               149 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              242               149 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               63               328 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               63               328 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              237               154 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              237               154 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              217               174 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              217               174 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               65               326 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               65               326 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              229               162 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              229               162 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               79               312 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               79               312 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               84               307 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               84               307 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               49               342 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               49               342 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               44               347 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               44               347 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              186               205 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              186               205 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               36               355 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               36               355 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              245               146 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              245               146 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              184               207 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              184               207 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               161                230 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               161                230 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               164                227 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               164                227 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               133                258 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               133                258 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               110                281 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               110                281 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                31                360 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                31                360 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                35                356 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                35                356 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               234                157 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               234                157 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               127                264 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               127                264 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               100                291 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               100                291 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               121                270 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               121                270 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               137                254 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               137                254 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               217                174 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               217                174 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                72                319 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                72                319 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               106                285 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               106                285 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               141                250 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               141                250 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               122                269 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               122                269 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                81                310 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                81                310 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                35                356 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                35                356 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                35                356 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                35                356 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               207                184 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               207                184 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                71                320 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                71                320 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               94               297 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               94               297 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "KARNOFSKYPERFORMANCESCORE"             
[15] "HISTOLOGICALTYPE"                      
[16] "RADIATIONS.RADIATION.REGIMENINDICATION"
[17] "NUMBERPACKYEARSSMOKED"                 
[18] "YEAROFTOBACCOSMOKINGONSET"             
[19] "COMPLETENESS.OF.RESECTION"             
[20] "BATCHNUMBER"                           

Input Data has 20 rows and 391 columns.

[1] "Batch" "20"   
[1] "Last Follow UP"
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
         370          136         2466         2417          146         1415 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
         345          396         1810          862          758           49 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
        1331          187           85         2753           92          826 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3636         1426         3016         2133         1852         1058 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
         473          964         3724          283         3644          267 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
         962           NA          908          661          329          979 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
         608          223           NA          131         1953           53 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
         429          822           NA          622         1067         1470 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
         734           17         1161         1057          399           NA 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
         587           NA          358          965         1974         1932 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
         444         1345           24         1651         2170           NA 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
         357          573          915         1912         1713          505 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        2524         3469         2979         1311         5286         3149 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
        4299          428           NA          334           NA          821 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
          80         1874          958          881          999          950 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
        1528         1575          994           NA          329          235 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
         428          698          168           NA           NA          120 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
          13           12          199          246          227          238 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
         207           12          103         1454         2253         1360 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
        2086           NA         2130         1848           52          740 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
          59          832         1107          474         1084         1086 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
         544           NA          748          684          399          822 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
         357          349          549          376          379          310 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
          NA           NA          212           48         2023          202 
TCGA-43-8116 TCGA-43-8118 TCGA-46-3765 TCGA-46-3766 TCGA-46-3767 TCGA-46-3768 
         193           NA           NA           NA           NA           NA 
TCGA-46-3769 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
          NA          324          422           12           12          911 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
         541           NA          922           NA           NA          880 
TCGA-56-5897 TCGA-56-5898 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
           3           NA           62           31           30           13 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7731 
          30           44           40           26            6           NA 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
           1           41          177           54           36           63 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BW TCGA-56-A4BX 
          17           16           34           30           NA           46 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DR TCGA-56-A5DS TCGA-58-8386 
          30           31            4           NA            8           NA 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
          NA          378          272         1341           NA           20 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
          NA         1113          539          641          109           NA 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
         311           NA           NA         2820          660         2446 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
        1505         2023         1259          274         1731         1531 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
        1075         1475         1296           96          982          908 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-63-5128 TCGA-63-5131 
        1092          717          815          358           NA           NA 
TCGA-63-6202 TCGA-63-7020 TCGA-63-7021 TCGA-63-7022 TCGA-63-7023 TCGA-66-2727 
          NA           NA           NA           NA           NA           NA 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
        1311           61          641           30           31           61 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
          28           30           30          638          761           30 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
          61           31           61           61           NA          700 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
         578           NA           61          578           NA          121 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
          NA          759           59          790         1217          699 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
          NA          699           NA          913           NA         1645 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
         122         1492           83          202          211          244 
TCGA-68-8251 TCGA-70-6722 TCGA-70-6723 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
          95           NA           NA           NA           NA           NA 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
          NA           NA         2736           NA           15         1285 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
          NA           NA           NA           NA          479           NA 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8128 TCGA-77-8130 TCGA-77-8131 TCGA-77-8133 
          NA         1641           NA         2522           NA           NA 
TCGA-77-8136 TCGA-77-8138 TCGA-77-8139 TCGA-77-8140 TCGA-77-8143 TCGA-77-8144 
          NA           NA         3166           NA           NA          833 
TCGA-77-8145 TCGA-77-8148 TCGA-77-8150 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
          NA          293           NA         1683         1092           10 
TCGA-77-A5GB TCGA-77-A5GH TCGA-79-5596 TCGA-85-6175 TCGA-85-6560 TCGA-85-6561 
          NA          713           NA           NA           11           24 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7710 
          34           18           10           49            1           NA 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
          35           38           60           26           60           16 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
          43           14           36           13           11           44 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
          54           60           55           67           54           61 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8584 
          20           22           20           27            4           NA 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A50Z 
           3           14           14           25           19           NA 
TCGA-85-A510 TCGA-85-A511 TCGA-85-A512 TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
          NA           NA           NA           24           13          757 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
          47           89           18          100          244          331 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
          82          106          122          160           69           87 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
          NA          143         1213         1343          188          210 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
         256           NA          413          223          308          222 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
          35          449           36           92         1722         1547 
TCGA-NC-A5HI 
        1135 
Variable 1:'AGE':	nDistinctValues=45,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=120,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=242,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=19,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=132,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=8,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 15:'HISTOLOGICAL.TYPE':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 16:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'NUMBERPACKYEARSSMOKED':	nDistinctValues=93,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 18:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=54,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 20:'BATCH.NUMBER':	nDistinctValues=25,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "KARNOFSKY.PERFORMANCE.SCORE"           
 [8] "HISTOLOGICAL.TYPE"                     
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "YEAROFTOBACCOSMOKINGONSET"             
[12] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 391 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=45, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=9, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
 92 239  42  18 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
 92 239  42  18 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
 92 239  42  18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
 92 239  42  18 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
245 103  33   5 
[1] "table(vv)"
vv
 N0  N1  N2  N3 
245 103  33   5 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
245 103  33   5 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 N0  N1  N2  N3 
245 103  33   5 
PATHOLOGY.M.STAGE, nv=3, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=8, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=4, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=93, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=54, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    46  24
  1P GAIN WILD-TYPE 189  98
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               70               287 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               24                98 
$`1P GAIN MUTATED`
TCGA-18-3414 TCGA-18-3417 TCGA-21-1070 TCGA-21-1081 TCGA-21-1082 TCGA-21-5787 
       13.02        24.92       119.54         9.30       119.80        10.82 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4605 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        1.74        27.02        32.02        79.20        11.74        18.84 
TCGA-33-4533 TCGA-34-2608 TCGA-34-5231 TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 
      114.05        32.84        50.24         7.73         1.08         0.39 
TCGA-37-4130 TCGA-37-4141 TCGA-39-5021 TCGA-39-5022 TCGA-39-5035 TCGA-39-5037 
        8.09         0.39        68.58        55.17        15.58        35.70 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 
       17.06        24.59        22.49        11.74        12.36        10.19 
TCGA-46-6025 TCGA-52-7809 TCGA-52-7810 TCGA-56-7223 TCGA-56-8504 TCGA-58-A46K 
       10.65         5.42        30.31         0.99         5.82        34.36 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2708 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 
       17.72        21.07        80.42        35.90        26.79        11.77 
TCGA-66-2734 TCGA-66-2742 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2771 
       43.10        21.07         0.92        25.02         0.99        19.00 
TCGA-66-2782 TCGA-66-2783 TCGA-68-8251 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       12.00        24.95         3.12        11.18        20.78         0.49 
TCGA-77-7338 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7699 
        0.16        30.81        23.44         0.36         1.12         0.03 
TCGA-85-7844 TCGA-85-8072 TCGA-85-A4CL TCGA-85-A50M TCGA-90-7964 TCGA-90-A4ED 
        1.25         1.18         0.46         0.62         3.29         8.02 
TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-J1-A4AH 
        5.26         0.16         4.70         7.30 

$`1P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       11.34        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 
        2.79        90.51         3.02        27.16        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI 
        8.78        31.63        88.08        29.85        21.73        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 
       19.99         7.33        14.93         4.31        64.21        14.10 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        34.75        13.12        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.73        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       54.28        71.34        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        7.63        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
       61.61        31.50        28.96        31.23        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82        14.07        22.95         5.52         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        3.95         0.43         6.54         7.46         7.82         6.81 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5024 TCGA-39-5027 
        3.39        47.80        74.07        44.71        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 
        1.71        24.33         1.94        27.35        36.39        35.64 
TCGA-39-5039 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       17.88        13.12        27.02        11.47        18.05        12.46 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.35         2.93         9.96        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       29.95        17.79         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
        2.04         1.02         0.99         0.43         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 
        0.85         0.20         0.03         1.35         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L 
       12.43         8.94        44.09        16.47         0.66        36.59 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       21.70        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       29.85        23.57        16.96         2.01         0.99         1.02 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 
        2.01         0.99         0.99        20.98         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01         7.07        23.01         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
       19.00        12.03         3.98         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 
        8.02        29.56        73.08        75.09        23.28        89.95 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09       106.95        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
       86.76        53.95        82.92       104.09        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 
       55.33        35.90         0.33         0.79         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.61         1.15         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        1.41         0.46         0.43         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66         0.89         0.13         0.10         0.46 
TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.82         0.79         0.43        24.89         1.55         2.93 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
        0.59        10.88         2.70         3.48         4.01         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        2.86        39.88        44.15         6.18         6.90         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58         7.33        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.03              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           119.80            173.79 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           11.885            11.340 
[1] "0.0 - 119.8 (11.9)" "0.0 - 173.8 (11.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"1P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P GAIN MUTATED         0        8       33        1         6        12
  1P GAIN WILD-TYPE       1       59       98        0        39        53
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1P GAIN MUTATED            9          3        3
  1P GAIN WILD-TYPE         44         17        2
D1V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED    12  54   5   4
  1P GAIN WILD-TYPE  80 185  37  14
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1              12                80
  T2              54               185
  T3               5                37
  T4               4                14
                   vv
clus                 N0  N1  N2  N3
  1P GAIN MUTATED    47  20   5   1
  1P GAIN WILD-TYPE 198  83  28   4
D1V5, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0              47               198
  N1              20                83
  N2               5                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1P GAIN MUTATED    64   3   8
  1P GAIN WILD-TYPE 269   2  39
D1V6, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  M0              64               269
  M1               3                 2
  MX               8                39
D1V7, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    18  57
  1P GAIN WILD-TYPE  80 236
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     18   57
  1P GAIN WILD-TYPE   80  236
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              18                80
  MALE                57               236
D1V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                       6
  1P GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P GAIN MUTATED                                        0
  1P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P GAIN MUTATED                                         0
  1P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P GAIN MUTATED                                                            69
  1P GAIN WILD-TYPE                                                         304
D1V9, multiclass
                                                             clus
vv                                                            1P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              69
                                                             clus
vv                                                            1P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               304
D1V10, binary
                   cls
clus                  0   1
  1P GAIN MUTATED     4  71
  1P GAIN WILD-TYPE   8 308
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      4   71
  1P GAIN WILD-TYPE    8  308
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                4                 8
  YES              71               308
D1V11, continuous
D1V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P GAIN MUTATED    61   3   1   3
  1P GAIN WILD-TYPE 256   4   3  15
D1V13, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  R0              61               256
  R1               3                 4
  R2               1                 3
  RX               3                15

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED   101  53
  1Q GAIN WILD-TYPE 134  69
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              154               203 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               53                69 
$`1Q GAIN MUTATED`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 
       12.16        81.07        46.52        13.02        59.51        24.92 
TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1081 
        3.02       119.54        46.88        99.16        34.78         9.30 
TCGA-21-1082 TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-1011 TCGA-22-1012 
      119.80        29.85        10.82        19.99         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        20.45        48.33         0.56        38.17 
TCGA-22-4605 TCGA-22-4607 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
       32.02        19.30        63.52        14.60        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-33-4533 
       79.20        11.74        18.84        30.08        62.86       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 
       97.94       173.79       141.34        14.07        54.44         2.63 
TCGA-34-2600 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 
       61.61        32.84        50.24        10.82         7.73         5.52 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4133 TCGA-37-4141 TCGA-39-5016 
        1.08         3.95         0.39         7.82         0.39        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 
       68.58        55.17        15.58        35.70        17.06        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-43-7657 
       22.49        13.12        11.74        12.36        10.19         1.58 
TCGA-46-6025 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-6545 
       10.65         0.39        17.79         5.42        30.31         2.04 
TCGA-56-7223 TCGA-56-7582 TCGA-56-8504 TCGA-56-8622 TCGA-56-A4BX TCGA-58-8388 
        0.99         0.85         5.82         1.78         1.51        12.43 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 TCGA-60-2698 TCGA-60-2707 
        0.66        34.36        17.72        21.07        10.22        21.70 
TCGA-60-2708 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       80.42        29.85        35.90        26.79        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        2.01        21.07         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        0.99         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-68-8251 
        3.98        12.00        24.95         1.94        40.01         3.12 
TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7338 
       73.08        23.28        11.18        20.78         0.49         0.16 
TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 TCGA-77-8148 TCGA-77-8156 TCGA-77-A5GB 
       46.78        86.76        53.95         9.63         0.33        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7844 
       23.44         0.36         1.12         0.59         0.03         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 
        0.85         1.97         0.53         1.41         1.18         0.36 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        1.81         2.20         1.78         0.10         0.46         0.46 
TCGA-85-A50M TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        0.62         2.93         3.29         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-J1-A4AH 
        3.48         5.26         0.16         4.70         6.18         7.30 
TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       14.76         3.02        56.61        50.86 

$`1Q GAIN WILD-TYPE`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3416 TCGA-18-3419 
        4.47        79.46         4.80        11.34        28.34         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1075 
       43.76         6.15         2.79        90.51        27.16        70.13 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1083 TCGA-21-5782 
       60.89        15.55        31.69       122.43         8.78        31.63 
TCGA-21-5783 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       88.08        21.73        32.19         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4609 
       64.21        35.08        24.13        34.75        13.12         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5477 TCGA-22-5478 TCGA-22-5491 
       11.77        31.73        64.90        44.22         0.79        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 
       16.60         7.63        43.10       103.53        10.98        19.76 
TCGA-33-6738 TCGA-34-2604 TCGA-34-2605 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
       26.99        31.50        28.96        31.23        51.78        32.68 
TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-4129 
        9.04        14.07        22.95         4.96         0.43         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 
        8.09         7.46         6.81         3.39        47.80        44.71 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 
       36.39        35.64        17.88        27.02        11.47        18.05 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 
       12.46         5.42         3.78         6.97        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        6.35         2.93         9.96        13.87         0.39        29.95 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45        28.93         0.10         1.02         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        0.43         1.45         1.32         0.20         0.03         1.35 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 
        8.94        44.09        16.47        36.59         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       96.82        37.94        92.71        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 
        3.16        32.28        23.57        16.96         0.99         1.02 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
        2.01         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       19.00        12.03        25.97        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6844 
        2.73         6.64         6.94         8.02        29.56        75.09 
TCGA-77-7139 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7465 TCGA-77-8007 
       89.95        42.25        70.09       106.95        15.75         6.51 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-85-6561 
       82.92       104.09        27.39        55.33        35.90         0.79 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7950 TCGA-85-8071 TCGA-85-8276 
        0.33         1.61         1.15         1.97         0.46         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.45         1.78         1.97         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L 
        0.66         0.89         0.13         0.82         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
       24.89         1.55         0.59         4.01         2.27         2.86 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       39.88        44.15         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HI 
        7.33        10.13         1.15         1.18        37.32 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.03              0.03 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           173.79            122.43 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
            12.26             10.13 
[1] "0.0 - 173.8 (12.3)" "0.0 - 122.4 (10.1)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"1Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"1Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D2V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q GAIN MUTATED         0       21       67        1        14        26
  1Q GAIN WILD-TYPE       1       46       64        0        31        39
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1Q GAIN MUTATED           22          8        3
  1Q GAIN WILD-TYPE         31         12        2
D2V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q GAIN MUTATED    28 107  19   8
  1Q GAIN WILD-TYPE  64 132  23  10
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              28                64
  T2             107               132
  T3              19                23
  T4               8                10
                   vv
clus                 N0  N1  N2  N3
  1Q GAIN MUTATED   103  43  12   2
  1Q GAIN WILD-TYPE 142  60  21   3
D2V5, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0             103               142
  N1              43                60
  N2              12                21
  N3               2                 3
                   vv
clus                 M0  M1  MX
  1Q GAIN MUTATED   141   3  17
  1Q GAIN WILD-TYPE 192   2  30
D2V6, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  M0             141               192
  M1               3                 2
  MX              17                30
D2V7, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    38 124
  1Q GAIN WILD-TYPE  60 169
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     38  124
  1Q GAIN WILD-TYPE   60  169
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE              38                60
  MALE               124               169
D2V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                      10
  1Q GAIN WILD-TYPE                                     2
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q GAIN MUTATED                                        1
  1Q GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q GAIN MUTATED                                         1
  1Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q GAIN MUTATED                                                           150
  1Q GAIN WILD-TYPE                                                         223
D2V9, multiclass
                                                             clus
vv                                                            1Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                    10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             150
                                                             clus
vv                                                            1Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               223
D2V10, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED     4 158
  1Q GAIN WILD-TYPE   8 221
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED      4  158
  1Q GAIN WILD-TYPE    8  221
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO                4                 8
  YES             158               221
D2V11, continuous
D2V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q GAIN MUTATED   136   4   1   7
  1Q GAIN WILD-TYPE 181   3   3  11
D2V13, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  R0             136               181
  R1               4                 3
  R2               1                 3
  RX               7                11

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED   106  48
  2P GAIN WILD-TYPE 129  74
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              154               203 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               48                74 
$`2P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 
       79.46        46.52        11.34        13.02        59.51        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-21-1072 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 
        1.61        43.76        99.16        60.89        31.69         9.30 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-A5DI TCGA-22-1016 TCGA-22-4591 
        8.78        88.08        21.73        32.19        27.02        20.45 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5473 
       24.13        38.17        13.12        32.02        31.73        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 
       14.60        44.22         0.79        54.28        71.34        11.74 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 
       18.84        62.86        56.32         7.63       173.79       141.34 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5231 
       26.99         2.63        61.61        31.50        28.96        50.24 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 TCGA-37-3792 
        9.04         7.73        14.07         5.52         1.08         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        8.09         7.82         0.39        47.80        74.07        44.71 
TCGA-39-5027 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 
       60.76        15.58        35.64        35.70        17.06        24.59 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        27.02        11.74        11.47        18.05        12.36 
TCGA-43-7658 TCGA-43-8115 TCGA-46-3768 TCGA-46-6025 TCGA-51-4080 TCGA-52-7809 
       66.51         6.64         9.96        10.65         0.39         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       30.31         8.75         1.02         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        0.85         0.20         5.82         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8391 TCGA-58-8392 TCGA-58-A46K TCGA-58-A46L 
        0.99         0.26        44.09        16.47        34.36        36.59 
TCGA-58-A46N TCGA-60-2698 TCGA-60-2703 TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 
       17.72        10.22        96.82        80.42        41.39         9.01 
TCGA-60-2719 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2737 TCGA-66-2758 
       42.61        35.90        23.57        11.77         2.01        20.98 
TCGA-66-2759 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
       25.02         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       40.01         4.04        30.02        10.06         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        2.73         6.64        29.56        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-8009 TCGA-77-8130 TCGA-77-8148 
        0.49        42.25        70.09        53.95        82.92         9.63 
TCGA-77-8156 TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 
        0.33        23.44         0.36         1.12         0.59         1.15 
TCGA-85-7844 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8350 
        1.25         1.97         0.53         1.41         1.18         1.97 
TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7767 
        2.01         0.10         0.46         0.82         0.62         2.93 
TCGA-90-7769 TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 
        0.59         3.48         0.16         4.70        44.15         6.18 
TCGA-98-7454 TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
        8.42         7.30        14.76         3.02 

$`2P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3416 TCGA-18-4083 
       12.16         4.47        81.07         4.80        28.34         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       70.13        34.78        15.55       122.43       119.80        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        14.10        48.82        35.08        48.33 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
        0.56        34.75        19.30         9.53        11.77        64.90 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       79.20        30.08        16.60       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-34-2608 
      103.53        14.07        54.44        10.98        19.76        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 
       31.23        51.78        32.68        10.82        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-5819 
        3.95         0.43         6.54         7.46         6.81         3.39 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-43-2578 TCGA-43-6647 TCGA-43-6770 
       27.35        36.39        17.88        22.49        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8116 TCGA-43-8118 
        5.42         3.78         6.97         1.58         6.35         2.93 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 
       13.87         0.39        29.95        17.79        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
        0.10         2.04         0.99         1.32         0.03         1.35 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4ZJ 
        1.78         1.18         2.07         0.56         0.99         1.02 
TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8393 
        0.13         0.03        13.25        12.43         8.94         0.66 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       21.07         3.58        12.23        37.94        92.71        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       49.48        66.51        56.91        50.33        35.34        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
        3.16        32.28        29.85        26.79        16.96        43.10 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
        0.99         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-68-7757 
       25.97        22.98        22.98         5.03        54.08         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 TCGA-77-7337 
        8.02         3.12        73.08        75.09        20.78       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8139 
        0.16        46.78        15.75         6.51        86.76       104.09 
TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-85-6561 TCGA-85-7697 
       27.39        55.33        35.90        30.81         0.79         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8071 TCGA-85-8276 
        1.61         0.03         1.97         0.85         0.46         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        0.36         1.45         1.78         1.81         2.20         1.78 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL 
        0.66         0.72         0.66         0.89         0.13         0.46 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED 
        0.79         0.43        24.89         1.55         3.29         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
       10.88         2.70         4.01         5.26         2.27         2.86 
TCGA-96-7544 TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
       39.88         6.90         2.73        13.58         7.33        10.13 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15         1.18        56.61        50.86        37.32 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.10              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           173.79            122.43 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            12.69             10.82 
[1] "0.1 - 173.8 (12.7)" "0.0 - 122.4 (10.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"2P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"2P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P GAIN MUTATED         1       21       58        1        20        29
  2P GAIN WILD-TYPE       0       46       73        0        25        36
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2P GAIN MUTATED           22         10        2
  2P GAIN WILD-TYPE         31         10        3
D3V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN MUTATED    33 103  20  10
  2P GAIN WILD-TYPE  59 136  22   8
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1              33                59
  T2             103               136
  T3              20                22
  T4              10                 8
                   vv
clus                 N0  N1  N2  N3
  2P GAIN MUTATED   101  51  11   2
  2P GAIN WILD-TYPE 144  52  22   3
D3V5, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0             101               144
  N1              51                52
  N2              11                22
  N3               2                 3
                   vv
clus                 M0  M1  MX
  2P GAIN MUTATED   143   2  18
  2P GAIN WILD-TYPE 190   3  29
D3V6, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  M0             143               190
  M1               2                 3
  MX              18                29
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    33 133
  2P GAIN WILD-TYPE  65 160
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     33  133
  2P GAIN WILD-TYPE   65  160
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              33                65
  MALE               133               160
D3V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                       9
  2P GAIN WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2P GAIN MUTATED                                        1
  2P GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2P GAIN MUTATED                                         0
  2P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P GAIN MUTATED                                                           156
  2P GAIN WILD-TYPE                                                         217
D3V9, multiclass
                                                             clus
vv                                                            2P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             156
                                                             clus
vv                                                            2P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               217
D3V10, binary
                   cls
clus                  0   1
  2P GAIN MUTATED     8 158
  2P GAIN WILD-TYPE   4 221
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      8  158
  2P GAIN WILD-TYPE    4  221
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                8                 4
  YES             158               221
D3V11, continuous
D3V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P GAIN MUTATED   139   1   1   5
  2P GAIN WILD-TYPE 178   6   3  13
D3V13, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  R0             139               178
  R1               1                 6
  R2               1                 3
  RX               5                13

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    65  37
  2Q GAIN WILD-TYPE 170  85
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              102               255 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               37                85 
$`2Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 TCGA-21-1081 
       79.46        46.52        11.34        13.02        99.16         9.30 
TCGA-21-1083 TCGA-21-A5DI TCGA-22-1016 TCGA-22-4594 TCGA-22-4595 TCGA-22-4605 
        8.78        32.19        27.02        48.33        24.13        32.02 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 
       14.60        44.22        71.34        11.74        18.84        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-34-2596 
       56.32         7.63       173.79       141.34        54.44         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 
       61.61        31.50        28.96         9.04         7.73        14.07 
TCGA-34-7107 TCGA-37-3792 TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 TCGA-39-5016 
        1.08         0.39         8.09         7.82        47.80        74.07 
TCGA-39-5019 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 
       44.71        15.58        35.64        35.70        17.06        24.59 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        27.02        11.74        11.47        18.05        12.36 
TCGA-46-3768 TCGA-51-4080 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-6546 
        9.96         0.39         5.42        30.31         8.75         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-A4BX 
        0.43         0.99         0.85         0.20         5.82         1.51 
TCGA-56-A5DS TCGA-58-8391 TCGA-58-A46N TCGA-60-2703 TCGA-60-2708 TCGA-60-2711 
        0.26        44.09        17.72        96.82        80.42        41.39 
TCGA-60-2712 TCGA-60-2719 TCGA-60-2723 TCGA-60-2726 TCGA-66-2759 TCGA-66-2770 
        9.01        42.61        35.90        11.77        25.02        23.01 
TCGA-66-2773 TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 
        3.02        30.02        10.06         2.73         6.64        29.56 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7142 TCGA-77-8009 TCGA-77-8130 TCGA-77-8156 
       23.28        89.95        42.25        53.95        82.92         0.33 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7843 TCGA-85-7844 TCGA-85-8049 TCGA-85-8070 
       23.44         0.36         1.15         1.25         1.97         1.41 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8354 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M 
        1.45         1.97         2.01         0.46         0.82         0.62 
TCGA-90-7769 TCGA-92-7341 TCGA-94-7557 TCGA-96-7545 TCGA-J1-A4AH TCGA-MF-A522 
        0.59         3.48         0.16        44.15         7.30         3.02 

$`2Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 
       12.16         4.47        81.07         4.80        59.51        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 
        3.02        27.16       119.54        46.88        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       34.78        15.55        31.69       122.43       119.80        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        21.73        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 
       14.93         4.31        64.21         1.74        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08         0.56        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5485 TCGA-22-5492 TCGA-33-4533 
        0.79        54.28        79.20        30.08        16.60       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 
       97.94        43.10       103.53        14.07        10.98        19.76 
TCGA-33-6738 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       26.99        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       10.82        22.95         5.52         4.96         3.95         0.43 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5021 
        6.54         7.46         6.81         0.39         3.39        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       55.17        70.03        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5039 TCGA-43-2578 TCGA-43-6647 TCGA-43-6770 
       27.35        36.39        17.88        22.49        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        6.35         2.93        10.65        13.87         0.39        29.95 
TCGA-52-7622 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 
       17.79        27.45        28.93         0.10         2.04         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 
        1.45         1.32         0.03         1.35         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         0.99         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.02         0.13         0.03        13.25        12.43         8.94 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 
       16.47         0.66        34.36        36.59        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 
       12.23        10.22        37.94        92.71        21.70        49.48 
TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
       66.51        56.91        50.33        35.34        48.49         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       32.28        29.85        23.57        26.79        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         2.01         7.07        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 
       40.01        22.98         4.04        22.98         5.03        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 
        4.01        49.05         6.94         8.02         3.12        73.08 
TCGA-77-6844 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       75.09        11.18        20.78         0.49        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8139 
        0.16        46.78        15.75         6.51        86.76       104.09 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-85-6561 
       27.39         9.63        55.33        35.90        30.81         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 
        1.12         0.59         0.33         1.61         0.03         1.97 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.85         0.53         0.46         1.18         0.43         0.36 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 
        1.78         1.81         2.20         1.78         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A513 
        0.66         0.89         0.13         0.10         0.46         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED 
        0.43        24.89         1.55         2.93         3.29         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
       10.88         2.70         4.01         5.26         2.27         2.86 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
        4.70        39.88         6.18         6.90         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.33        10.13         1.15        14.76         1.18 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.16              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           173.79            122.43 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            13.07             10.82 
[1] "0.2 - 173.8 (13.1)" "0.0 - 122.4 (10.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D4V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q GAIN MUTATED         1       12       40        1        14        18
  2Q GAIN WILD-TYPE       0       55       91        0        31        47
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2Q GAIN MUTATED           13          5        1
  2Q GAIN WILD-TYPE         40         15        4
D4V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN MUTATED    20  69  11   7
  2Q GAIN WILD-TYPE  72 170  31  11
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1              20                72
  T2              69               170
  T3              11                31
  T4               7                11
                   vv
clus                 N0  N1  N2  N3
  2Q GAIN MUTATED    68  32   7   0
  2Q GAIN WILD-TYPE 177  71  26   5
D4V5, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0              68               177
  N1              32                71
  N2               7                26
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2Q GAIN MUTATED    91   1  12
  2Q GAIN WILD-TYPE 242   4  35
D4V6, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  M0              91               242
  M1               1                 4
  MX              12                35
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    24  83
  2Q GAIN WILD-TYPE  74 210
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     24   83
  2Q GAIN WILD-TYPE   74  210
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              24                74
  MALE                83               210
D4V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                       7
  2Q GAIN WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q GAIN MUTATED                                        1
  2Q GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q GAIN MUTATED                                         1
  2Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q GAIN MUTATED                                                            98
  2Q GAIN WILD-TYPE                                                         275
D4V9, multiclass
                                                             clus
vv                                                            2Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              98
                                                             clus
vv                                                            2Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               275
D4V10, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED     6 101
  2Q GAIN WILD-TYPE   6 278
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      6  101
  2Q GAIN WILD-TYPE    6  278
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                6                 6
  YES             101               278
D4V11, continuous
D4V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q GAIN MUTATED    89   1   0   2
  2Q GAIN WILD-TYPE 228   6   4  16
D4V13, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  R0              89               228
  R1               1                 6
  R2               0                 4
  RX               2                16

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    40  33
  3P GAIN WILD-TYPE 195  89
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               73               284 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               33                89 
$`3P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-21-1080 TCGA-21-1081 TCGA-22-1000 TCGA-22-1002 
        4.80        13.02       122.43         9.30        14.93         4.31 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4601 TCGA-22-5477 TCGA-22-5485 TCGA-22-5489 
       35.08        24.13        34.75        44.22        30.08        62.86 
TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4582 TCGA-33-4586 TCGA-34-2609 
       56.32       114.05        97.94       103.53        14.07        31.23 
TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78         9.04         7.73        14.07        22.95         5.52 
TCGA-34-7107 TCGA-37-3783 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        1.08         3.95         3.39        44.71        68.58        55.17 
TCGA-39-5029 TCGA-39-5037 TCGA-39-5040 TCGA-43-3394 TCGA-43-5670 TCGA-43-6771 
       24.33        35.70        17.06        27.02        18.05         5.42 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7810 TCGA-56-7223 TCGA-56-7730 
        9.96        10.65        13.87        30.31         0.99         0.20 
TCGA-56-A49D TCGA-58-8393 TCGA-60-2703 TCGA-60-2706 TCGA-60-2713 TCGA-60-2715 
        0.99         0.66        96.82        92.71        56.91        35.34 
TCGA-66-2727 TCGA-66-2756 TCGA-66-2766 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
       16.96         0.99         1.02        19.00         3.02         2.01 
TCGA-77-7140 TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 TCGA-77-A5GB TCGA-85-6561 
       20.78        46.78        86.76        53.95        30.81         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-8049 TCGA-85-8350 TCGA-85-8352 TCGA-85-8580 
        1.12         0.59         1.97         1.97         2.20         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-98-8020 
        0.13         0.10         2.86         4.70        44.15         2.73 
TCGA-J1-A4AH 
        7.30 

$`3P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.73 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1005 TCGA-22-1011 
       10.82        32.19        19.99         7.33        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
       14.10        27.02        48.82        20.45        48.33         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
       31.73        64.90        63.52        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 TCGA-33-4532 
       71.34        79.20        11.74        18.84        16.60         7.63 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       173.79       141.34        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 
       50.24        32.68        10.82         4.96         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       47.80        74.07        70.03        60.76         1.71         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 
       27.35        36.39        15.58        35.64        17.88        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 
       22.49        13.12        11.74        11.47        12.36        12.46 
TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        6.35         2.93         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.42         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        1.02         0.99         0.43         1.45         1.32         0.85 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43         8.94 
TCGA-58-8391 TCGA-58-8392 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       44.09        16.47        34.36        36.59        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
        3.58        12.23        10.22        37.94        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2716 
       49.48        66.51        41.39         9.01        50.33        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       26.79        11.77        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        0.99         2.01         2.01         2.01         7.07        23.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       25.97        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       30.02        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        11.18        89.95         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8130 
       70.09       106.95         0.16        15.75         6.51        82.92 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
      104.09        27.39         9.63        55.33        35.90         0.33 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
       23.44         0.36         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         1.97         0.85         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
        1.18         0.43         0.36         1.45         1.78         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8666 
        1.78         2.01         0.66         0.72         0.66         0.46 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        1.55         2.93         0.59         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
        2.70         3.48         4.01         5.26         2.27         0.16 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       39.88         6.18         6.90         8.42        13.58         7.33 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         1.15        14.76         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.10              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           122.43            173.79 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
            14.07             11.26 
[1] "0.1 - 122.4 (14.1)" "0.0 - 173.8 (11.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3P GAIN MUTATED"   "3P GAIN MUTATED"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"3P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D5V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P GAIN MUTATED         0       17       21        1         8        15
  3P GAIN WILD-TYPE       1       50      110        0        37        50
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3P GAIN MUTATED           17          3        1
  3P GAIN WILD-TYPE         36         17        4
D5V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN MUTATED    21  46  11   5
  3P GAIN WILD-TYPE  71 193  31  13
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1              21                71
  T2              46               193
  T3              11                31
  T4               5                13
                   vv
clus                 N0  N1  N2  N3
  3P GAIN MUTATED    48  23  10   0
  3P GAIN WILD-TYPE 197  80  23   5
D5V5, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0              48               197
  N1              23                80
  N2              10                23
  N3               0                 5
                   vv
clus                 M0  M1  MX
  3P GAIN MUTATED    73   1   8
  3P GAIN WILD-TYPE 260   4  39
D5V6, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  M0              73               260
  M1               1                 4
  MX               8                39
D5V7, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    16  67
  3P GAIN WILD-TYPE  82 226
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     16   67
  3P GAIN WILD-TYPE   82  226
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              16                82
  MALE                67               226
D5V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                       1
  3P GAIN WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P GAIN MUTATED                                        0
  3P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P GAIN MUTATED                                         0
  3P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P GAIN MUTATED                                                            82
  3P GAIN WILD-TYPE                                                         291
D5V9, multiclass
                                                             clus
vv                                                            3P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              82
                                                             clus
vv                                                            3P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               291
D5V10, binary
                   cls
clus                  0   1
  3P GAIN MUTATED     3  80
  3P GAIN WILD-TYPE   9 299
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      3   80
  3P GAIN WILD-TYPE    9  299
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                3                 9
  YES              80               299
D5V11, continuous
D5V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P GAIN MUTATED    63   2   1   4
  3P GAIN WILD-TYPE 254   5   3  14
D5V13, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  R0              63               254
  R1               2                 5
  R2               1                 3
  RX               4                14

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED   144  76
  3Q GAIN WILD-TYPE  91  46
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
              220               137 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               76                46 
$`3Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 
        4.47        79.46         4.80        13.02        24.92         1.61 
TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 
       43.76         2.79        27.16       119.54        46.88        60.89 
TCGA-21-1077 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 
       34.78       122.43         9.30         8.78        88.08        29.85 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1012 
       21.73        32.19        19.99        14.93         4.31        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 
       20.45        35.08        24.13        38.17        34.75        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5477 TCGA-22-5479 
       19.30         9.53        11.77        64.90        44.22        54.28 
TCGA-22-5480 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       71.34        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
      114.05        97.94        43.10       173.79       103.53        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       54.44        10.98         2.63        61.61        31.50        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       31.23        51.78         9.04         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        5.52         1.08         3.95         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39         3.39        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       15.58        35.70        17.06        24.59        22.49        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6771 TCGA-43-7657 TCGA-43-7658 
       11.74        18.05        12.36         5.42         1.58        66.51 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 
        9.96        10.65        13.87         0.39        29.95         5.42 
TCGA-52-7810 TCGA-56-5897 TCGA-56-6546 TCGA-56-7223 TCGA-56-7730 TCGA-56-7822 
       30.31         0.10         1.02         0.99         0.20         0.03 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        5.82         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.99         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8390 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 
       13.25         8.94         0.66        34.36        17.72        21.07 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 
       96.82        37.94        92.71        21.70        80.42        66.51 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
        9.01        56.91        35.34        32.28        35.90        23.57 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 
       11.77        16.96        43.10        21.07         0.99         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        2.01        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 
       12.03         3.98        24.95        25.97        40.01         4.04 
TCGA-66-2790 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 
       22.98        49.05         2.73         6.64         8.02         3.12 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       29.56        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
       70.09         0.16        46.78        15.75        86.76        53.95 
TCGA-77-8139 TCGA-77-8148 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 
      104.09         9.63        30.81        23.44         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        1.12         0.59         0.33         1.15         1.25         1.97 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 
        1.97         0.53         1.18         0.43         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 TCGA-85-8582 
        1.97         1.81         2.20         1.78         0.89         0.13 
TCGA-85-8664 TCGA-85-A4QR TCGA-90-7766 TCGA-90-7767 TCGA-90-A4EE TCGA-92-8063 
        0.10         0.82         1.55         2.93        10.88         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         4.70        39.88        44.15 
TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 
        6.90         2.73        13.58         7.33         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HI 
       14.76         1.18         3.02        37.32 

$`3Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 
       12.16        81.07        46.52        11.34        59.51        28.34 
TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-21-1072 TCGA-21-1075 TCGA-21-1078 
        6.15        90.51         3.02        99.16        70.13        15.55 
TCGA-21-1079 TCGA-21-1082 TCGA-21-5782 TCGA-21-5787 TCGA-22-0944 TCGA-22-1005 
       31.69       119.80        31.63        10.82         7.33        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 TCGA-22-4604 
        1.74        27.02        48.82        48.33         0.56        13.12 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5481 TCGA-22-5482 
       31.73        63.52        14.60         0.79        79.20        11.74 
TCGA-22-5483 TCGA-33-4583 TCGA-33-6737 TCGA-33-6738 TCGA-34-2605 TCGA-34-5231 
       18.84       141.34        19.76        26.99        28.96        50.24 
TCGA-34-5234 TCGA-34-5239 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       32.68        10.82         4.96         0.43         0.39         6.54 
TCGA-39-5011 TCGA-39-5027 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-43-2581 
       47.80        60.76        36.39        35.64        17.88        13.12 
TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 
       11.47        12.46        10.19         3.78         6.97         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-51-4079 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 
        6.35         2.93         0.39        17.79         8.75        27.45 
TCGA-56-1622 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 
       28.93         2.04         0.99         0.43         1.45         1.32 
TCGA-56-7582 TCGA-56-8503 TCGA-56-8622 TCGA-56-A4BX TCGA-58-8388 TCGA-58-8391 
        0.85         1.35         1.78         1.51        12.43        44.09 
TCGA-58-8392 TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2709 
       16.47        36.59         3.58        12.23        10.22        49.48 
TCGA-60-2711 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
       41.39        50.33        48.49        42.61         3.16        29.85 
TCGA-60-2725 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2768 
       26.79         2.01         1.02         2.01         0.99         2.01 
TCGA-66-2769 TCGA-66-2782 TCGA-66-2785 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 
        7.07        12.00         1.94        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7757 TCGA-77-6843 TCGA-77-6844 
       10.06        54.08         4.01         6.94        73.08        75.09 
TCGA-77-7142 TCGA-77-7337 TCGA-77-8007 TCGA-77-8130 TCGA-77-8144 TCGA-77-8153 
       42.25       106.95         6.51        82.92        27.39        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-85-7698 TCGA-85-7699 TCGA-85-8048 TCGA-85-8070 
       35.90         0.33         1.61         0.03         0.85         1.41 
TCGA-85-8071 TCGA-85-8277 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        0.46         0.36         2.01         0.66         0.72         0.66 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.46         0.62         0.79         0.43        24.89 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-94-7557 
        0.59         3.29         8.02         2.70         3.48         0.16 
TCGA-96-8169 TCGA-98-7454 TCGA-98-8023 TCGA-NC-A5HE TCGA-NC-A5HG 
        6.18         8.42        10.13        56.61        50.86 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.03              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           173.79            141.34 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           12.195            10.820 
[1] "0.0 - 173.8 (12.2)" "0.0 - 141.3 (10.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
  "3Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
  "3Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
  "3Q GAIN MUTATED" 
[1] "hr=" "1"  
D6V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q GAIN MUTATED         1       45       76        1        27        40
  3Q GAIN WILD-TYPE       0       22       55        0        18        25
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3Q GAIN MUTATED           35         12        5
  3Q GAIN WILD-TYPE         18          8        0
D6V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q GAIN MUTATED    61 146  25  11
  3Q GAIN WILD-TYPE  31  93  17   7
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              61                31
  T2             146                93
  T3              25                17
  T4              11                 7
                   vv
clus                 N0  N1  N2  N3
  3Q GAIN MUTATED   149  67  20   4
  3Q GAIN WILD-TYPE  96  36  13   1
D6V5, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0             149                96
  N1              67                36
  N2              20                13
  N3               4                 1
                   vv
clus                 M0  M1  MX
  3Q GAIN MUTATED   204   5  32
  3Q GAIN WILD-TYPE 129   0  15
D6V6, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  M0             204               129
  M1               5                 0
  MX              32                15
D6V7, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    65 178
  3Q GAIN WILD-TYPE  33 115
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     65  178
  3Q GAIN WILD-TYPE   33  115
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              65                33
  MALE               178               115
D6V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                       9
  3Q GAIN WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q GAIN MUTATED                                        0
  3Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q GAIN MUTATED                                         1
  3Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q GAIN MUTATED                                                           233
  3Q GAIN WILD-TYPE                                                         140
D6V9, multiclass
                                                             clus
vv                                                            3Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             233
                                                             clus
vv                                                            3Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               140
D6V10, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED     9 234
  3Q GAIN WILD-TYPE   3 145
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      9  234
  3Q GAIN WILD-TYPE    3  145
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                9                 3
  YES             234               145
D6V11, continuous
D6V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q GAIN MUTATED   195   4   3  12
  3Q GAIN WILD-TYPE 122   3   1   6
D6V13, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  R0             195               122
  R1               4                 3
  R2               3                 1
  RX              12                 6

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    10  10
  4P GAIN WILD-TYPE 225 112
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               20               337 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               10               112 
$`4P GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-22-1017 TCGA-22-4591 TCGA-22-4601 TCGA-22-5478 
       79.46         4.80        48.82        20.45        34.75         0.79 
TCGA-34-2596 TCGA-34-2609 TCGA-37-4130 TCGA-43-2576 TCGA-43-3920 TCGA-43-8116 
        2.63        31.23         8.09        24.59        11.74         6.35 
TCGA-60-2715 TCGA-66-2763 TCGA-68-8250 TCGA-77-6842 TCGA-77-8007 TCGA-90-7767 
       35.34         0.99         8.02        29.56         6.51         2.93 
TCGA-96-7545 TCGA-98-8022 
       44.15         7.33 

$`4P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       29.85        21.73        10.82        32.19        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       35.08        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60        44.22        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       15.58        35.64        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       13.12        27.02        11.47        18.05        12.36        12.46 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         2.93         9.96        10.65        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39        29.95        17.79         5.42        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        0.56         0.53         1.12         0.99         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.02         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
        8.94        44.09        16.47         0.66        34.36        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 
       41.39         9.01        56.91        50.33        48.49        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        32.28        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       25.02         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        3.12        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 
       46.78        15.75        86.76        53.95        82.92       104.09 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB 
       27.39         9.63        55.33        35.90         0.33        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         0.66         0.72         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
        0.13         0.10         0.46         0.46         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.79         0.43        24.89         1.55         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        8.02        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 
        2.27         2.86         0.16         4.70        39.88         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH 
        6.90         8.42         2.73        13.58        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.79              0.03 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            79.46            173.79 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
            9.915            11.770 
[1] "0.8 - 79.5 (9.9)"   "0.0 - 173.8 (11.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4P GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D7V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P GAIN MUTATED         0        6        4        0         1         6
  4P GAIN WILD-TYPE       1       61      127        1        44        59
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4P GAIN MUTATED            5          0        0
  4P GAIN WILD-TYPE         48         20        5
D7V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED     8  10   3   2
  4P GAIN WILD-TYPE  84 229  39  16
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1               8                84
  T2              10               229
  T3               3                39
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  4P GAIN MUTATED    15   6   2   0
  4P GAIN WILD-TYPE 230  97  31   5
D7V5, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0              15               230
  N1               6                97
  N2               2                31
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4P GAIN MUTATED    20   0   3
  4P GAIN WILD-TYPE 313   5  44
D7V6, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  M0              20               313
  M1               0                 5
  MX               3                44
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     3  20
  4P GAIN WILD-TYPE  95 273
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      3   20
  4P GAIN WILD-TYPE   95  273
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE               3                95
  MALE                20               273
D7V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                       1
  4P GAIN WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P GAIN MUTATED                                        0
  4P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P GAIN MUTATED                                         0
  4P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P GAIN MUTATED                                                            22
  4P GAIN WILD-TYPE                                                         351
D7V9, multiclass
                                                             clus
vv                                                            4P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              22
                                                             clus
vv                                                            4P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               351
D7V10, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     1  22
  4P GAIN WILD-TYPE  11 357
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      1   22
  4P GAIN WILD-TYPE   11  357
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                1                11
  YES              22               357
D7V11, continuous
D7V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P GAIN MUTATED    17   1   0   2
  4P GAIN WILD-TYPE 300   6   4  16
D7V13, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  R0              17               300
  R1               1                 6
  R2               0                 4
  RX               2                16

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED     8   6
  4Q GAIN WILD-TYPE 227 116
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               14               343 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
                6               116 
$`4Q GAIN MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 TCGA-22-4593 TCGA-22-4601 TCGA-33-6738 
       79.46         4.80        28.34        35.08        34.75        26.99 
TCGA-34-2596 TCGA-34-2609 TCGA-43-2576 TCGA-43-3920 TCGA-56-7579 TCGA-60-2715 
        2.63        31.23        24.59        11.74         1.45        35.34 
TCGA-66-2781 TCGA-96-7545 
        3.98        44.15 

$`4Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       21.73        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       20.45        48.33        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       16.60         7.63       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       70.03        60.76         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       36.39        15.58        35.64        35.70        17.88        17.06 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       22.49        13.12        27.02        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.46        10.19         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 
       66.51         6.64         6.35         2.93         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.87         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 
        1.02         0.99         0.43         0.99         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.20         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K 
       12.43         8.94        44.09        16.47         0.66        34.36 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 
       66.51        41.39         9.01        56.91        50.33        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.09       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
       86.76        53.95        82.92       104.09        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       55.33        35.90         0.33        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.46         0.46         0.82         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
       24.89         1.55         2.93         0.59         3.29         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
       10.88         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16         4.70        39.88         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             1.45              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
            79.46            173.79 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           27.665            11.340 
[1] "1.4 - 79.5 (27.7)"  "0.0 - 173.8 (11.3)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"4Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D8V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q GAIN MUTATED         0        2        2        0         1         4
  4Q GAIN WILD-TYPE       1       65      129        1        44        61
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4Q GAIN MUTATED            5          0        0
  4Q GAIN WILD-TYPE         48         20        5
D8V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     4   8   2   1
  4Q GAIN WILD-TYPE  88 231  40  17
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               4                88
  T2               8               231
  T3               2                40
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  4Q GAIN MUTATED     8   5   2   0
  4Q GAIN WILD-TYPE 237  98  31   5
D8V5, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0               8               237
  N1               5                98
  N2               2                31
  N3               0                 5
                   vv
clus                 M0  M1  MX
  4Q GAIN MUTATED    13   0   2
  4Q GAIN WILD-TYPE 320   5  45
D8V6, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  M0              13               320
  M1               0                 5
  MX               2                45
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     2  13
  4Q GAIN WILD-TYPE  96 280
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      2   13
  4Q GAIN WILD-TYPE   96  280
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE               2                96
  MALE                13               280
D8V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                       1
  4Q GAIN WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q GAIN MUTATED                                        0
  4Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q GAIN MUTATED                                         0
  4Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q GAIN MUTATED                                                            14
  4Q GAIN WILD-TYPE                                                         359
D8V9, multiclass
                                                             clus
vv                                                            4Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              14
                                                             clus
vv                                                            4Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               359
D8V10, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     1  14
  4Q GAIN WILD-TYPE  11 365
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1   14
  4Q GAIN WILD-TYPE   11  365
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                11
  YES              14               365
D8V11, continuous
D8V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q GAIN MUTATED    12   0   0   1
  4Q GAIN WILD-TYPE 305   7   4  17
D8V13, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  R0              12               305
  R1               0                 7
  R2               0                 4
  RX               1                17

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED   142  74
  5P GAIN WILD-TYPE  93  48
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              216               141 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               74                48 
$`5P GAIN MUTATED`
TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3421 
       46.52        11.34        13.02        59.51        24.92        43.76 
TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 
        3.02        46.88        99.16        70.13        34.78       122.43 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        9.30        31.63        88.08        29.85        21.73        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 
       32.19        19.99         7.33         4.31         1.74        14.10 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 
       38.17        34.75         9.53        11.77        31.73        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 
       14.60        44.22         0.79        11.74        18.84        16.60 
TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 
      114.05       173.79       103.53        54.44        26.99         2.63 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.50        32.84        31.23         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
       14.07         5.52         4.96         1.08         3.95         0.39 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17        70.03        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       15.58        35.64        17.88        24.59        13.12        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-7656 
       11.74        11.47        18.05        12.36        12.46         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        1.58        66.51         6.35         9.96        10.65        13.87 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 
       29.95        17.79         5.42         8.75        28.93         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        1.02         0.99         0.43         1.32         0.85         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.35         5.82         1.18         0.56         0.53         1.12 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        1.51         0.99         1.02         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46K TCGA-58-A46N 
       12.43         8.94        44.09        16.47        34.36        17.72 
TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2711 TCGA-60-2712 
       21.07        12.23        96.82        37.94        41.39         9.01 
TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       50.33        42.61         3.16        32.28        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       26.79        11.77        16.96         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 
        1.02         0.99         0.99        20.98        25.02         1.02 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2782 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 TCGA-66-2794 
       12.00        25.97        40.01        22.98        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-77-6842 TCGA-77-6844 
        4.01        49.05         6.64         6.94        29.56        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7141 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       23.28        11.18         0.49       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 
       15.75         6.51        86.76        53.95        82.92       104.09 
TCGA-77-8156 TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 
        0.33        23.44         0.36         1.12         0.59         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 
        1.15         1.25         0.85         1.97         0.46         1.18 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.45         1.97         1.81         0.72         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7766 
        0.13         0.10         0.46         0.82         0.62         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-94-7557 TCGA-96-7544 
        2.93         0.59         2.70         3.48         0.16        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
       44.15         6.18         6.90         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30         1.15        14.76         1.18         3.02 

$`5P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3416 
       12.16         4.47        81.07        79.46         4.80        28.34 
TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
        1.61         6.15         2.79        90.51        27.16       119.54 
TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 TCGA-22-1000 
       60.89        15.55        31.69       119.80         8.78        14.93 
TCGA-22-1005 TCGA-22-1017 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-5472 
       64.21        48.82        13.12        32.02        19.30        64.90 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       54.28        71.34        79.20        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
        7.63        97.94        43.10       141.34        14.07        10.98 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       19.76        61.61        28.96        50.24        51.78        32.68 
TCGA-34-5927 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5019 
       22.95         0.43         6.54         8.09         7.46        44.71 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5034 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 
       60.76         1.71        36.39        35.70        17.06        22.49 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-43-8118 TCGA-51-4079 
       10.19         5.42         3.78         6.64         2.93         0.39 
TCGA-51-4080 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-7223 TCGA-56-7579 
        0.39        30.31        27.45         0.10         0.99         1.45 
TCGA-56-7730 TCGA-56-8622 TCGA-56-8625 TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8393 
        0.20         1.78         2.07         0.99         0.13         0.66 
TCGA-58-A46L TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       36.59         3.58        10.22        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 
       49.48        66.51        56.91        35.34        48.49        29.85 
TCGA-66-2734 TCGA-66-2754 TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 
       43.10         2.01         0.92         0.99         2.01         2.01 
TCGA-66-2768 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2789 
        2.01        12.03         3.98        24.95         1.94         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-68-7755 TCGA-68-8250 TCGA-68-8251 
       22.98         5.03        10.06         2.73         8.02         3.12 
TCGA-77-6843 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-8144 
       73.08        89.95        20.78        42.25        70.09        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-85-6561 TCGA-85-7697 
        9.63        55.33        35.90        30.81         0.79         0.33 
TCGA-85-7698 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 
        1.61         1.97         0.53         1.41         0.43         0.36 
TCGA-85-8288 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-A4CL 
        1.78         2.20         1.78         2.01         0.66         0.46 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        0.79         0.43        24.89         3.29         8.02        10.88 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-98-7454 
        4.01         5.26         2.27         2.86         4.70         8.42 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.03              0.10 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           173.79            141.34 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           11.755            10.980 
[1] "0.0 - 173.8 (11.8)" "0.1 - 141.3 (11.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D9V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P GAIN MUTATED         1       39       80        1        25        45
  5P GAIN WILD-TYPE       0       28       51        0        20        20
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5P GAIN MUTATED           30         12        4
  5P GAIN WILD-TYPE         23          8        1
D9V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P GAIN MUTATED    50 153  23  13
  5P GAIN WILD-TYPE  42  86  19   5
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              50                42
  T2             153                86
  T3              23                19
  T4              13                 5
                   vv
clus                 N0  N1  N2  N3
  5P GAIN MUTATED   154  61  22   1
  5P GAIN WILD-TYPE  91  42  11   4
D9V5, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0             154                91
  N1              61                42
  N2              22                11
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5P GAIN MUTATED   204   4  28
  5P GAIN WILD-TYPE 129   1  19
D9V6, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  M0             204               129
  M1               4                 1
  MX              28                19
D9V7, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    59 180
  5P GAIN WILD-TYPE  39 113
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     59  180
  5P GAIN WILD-TYPE   39  113
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE              59                39
  MALE               180               113
D9V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                       8
  5P GAIN WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P GAIN MUTATED                                        2
  5P GAIN WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P GAIN MUTATED                                         1
  5P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P GAIN MUTATED                                                           228
  5P GAIN WILD-TYPE                                                         145
D9V9, multiclass
                                                             clus
vv                                                            5P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             228
                                                             clus
vv                                                            5P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               145
D9V10, binary
                   cls
clus                  0   1
  5P GAIN MUTATED     7 232
  5P GAIN WILD-TYPE   5 147
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED      7  232
  5P GAIN WILD-TYPE    5  147
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO                7                 5
  YES             232               147
D9V11, continuous
D9V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P GAIN MUTATED   200   5   3   4
  5P GAIN WILD-TYPE 117   2   1  14
D9V13, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  R0             200               117
  R1               5                 2
  R2               3                 1
  RX               4                14

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    41  25
  5Q GAIN WILD-TYPE 194  97
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               66               291 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               25                97 
$`5Q GAIN MUTATED`
TCGA-18-5592 TCGA-21-1071 TCGA-21-1075 TCGA-21-5782 TCGA-21-A5DI TCGA-22-1011 
        3.02        46.88        70.13        31.63        32.19         1.74 
TCGA-22-1012 TCGA-22-4595 TCGA-22-4596 TCGA-22-4613 TCGA-22-5478 TCGA-22-5482 
       14.10        24.13         0.56        11.77         0.79        11.74 
TCGA-22-5483 TCGA-33-4582 TCGA-34-2596 TCGA-34-5236 TCGA-34-5241 TCGA-34-5928 
       18.84       103.53         2.63         9.04        14.07         5.52 
TCGA-37-3792 TCGA-37-5819 TCGA-39-5021 TCGA-39-5039 TCGA-43-3920 TCGA-43-6143 
        0.39         3.39        68.58        17.88        11.74        12.36 
TCGA-43-7658 TCGA-56-7222 TCGA-56-7580 TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 
       66.51         0.43         1.32         1.35         1.18         0.56 
TCGA-58-8386 TCGA-58-8390 TCGA-58-A46N TCGA-60-2703 TCGA-60-2712 TCGA-60-2719 
        0.03         8.94        17.72        96.82         9.01        42.61 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2744 TCGA-66-2758 TCGA-66-2771 TCGA-66-2778 
       23.57        26.79         0.99        20.98        19.00        19.00 
TCGA-66-2786 TCGA-66-2792 TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7337 
       25.97        30.02        29.56        75.09        11.18       106.95 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8130 TCGA-77-8156 TCGA-85-7699 
       46.78        15.75        86.76        82.92         0.33         0.03 
TCGA-85-8048 TCGA-85-8350 TCGA-85-8582 TCGA-90-7769 TCGA-92-7340 TCGA-96-8169 
        0.85         1.97         0.13         0.59         2.70         6.18 
TCGA-96-8170 TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 
        6.90         2.73         7.30         1.15         1.18         3.02 

$`5Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
       43.76         6.15         2.79        90.51        27.16       119.54 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.30       119.80         8.78        88.08        29.85        21.73 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 
       27.02        48.82        20.45        35.08        48.33        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
       34.75        13.12        32.02        19.30         9.53        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       79.20        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       173.79       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76        26.99        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       10.82         7.73        22.95         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        0.39        47.80        74.07        44.71        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64        35.70        17.06        24.59        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       13.12        27.02        11.47        18.05        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97         1.58         6.64         6.35 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.93         9.96        10.65        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       29.95        17.79         5.42        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 
       28.93         0.10         2.04         1.02         0.99         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 
        1.45         0.85         0.20         0.03         5.82         1.78 
TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.53         1.12         0.99         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 
        1.02         0.13         0.26        13.25        12.43        44.09 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 
       16.47         0.66        34.36        36.59        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        37.94        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       49.48        66.51        41.39        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 
       48.49         3.16        32.28        29.85        35.90        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10         2.01        21.07         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        1.02         2.01         2.01         7.07        23.01         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        2.01        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 
       40.01        22.98         4.04        22.98         5.03        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 
        8.02         3.12        73.08        23.28        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-8007 TCGA-77-8009 
        0.49        42.25        70.09         0.16         6.51        53.95 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB 
      104.09        27.39         9.63        55.33        35.90        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 
        1.61         1.15         1.25         1.97         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.72         0.66         0.89         0.10         0.46         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         1.55 
TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 
        2.93         3.29         8.02        10.88         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A524 
       44.15         8.42        13.58         7.33        10.13        14.76 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.03              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           106.95            173.79 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
            11.46             12.00 
[1] "0.0 - 107.0 (11.5)" "0.0 - 173.8 (12.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"5Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D10V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q GAIN MUTATED         1       11       23        0         8        19
  5Q GAIN WILD-TYPE       0       56      108        1        37        46
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5Q GAIN MUTATED            6          1        1
  5Q GAIN WILD-TYPE         47         19        4
D10V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED    17  44   9   1
  5Q GAIN WILD-TYPE  75 195  33  17
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1              17                75
  T2              44               195
  T3               9                33
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  5Q GAIN MUTATED    45  21   3   1
  5Q GAIN WILD-TYPE 200  82  30   4
D10V5, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0              45               200
  N1              21                82
  N2               3                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  5Q GAIN MUTATED    61   1   7
  5Q GAIN WILD-TYPE 272   4  40
D10V6, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  M0              61               272
  M1               1                 4
  MX               7                40
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    17  54
  5Q GAIN WILD-TYPE  81 239
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     17   54
  5Q GAIN WILD-TYPE   81  239
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              17                81
  MALE                54               239
D10V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                       2
  5Q GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q GAIN MUTATED                                        0
  5Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q GAIN MUTATED                                         0
  5Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q GAIN MUTATED                                                            69
  5Q GAIN WILD-TYPE                                                         304
D10V9, multiclass
                                                             clus
vv                                                            5Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              69
                                                             clus
vv                                                            5Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               304
D10V10, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED     2  69
  5Q GAIN WILD-TYPE  10 310
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      2   69
  5Q GAIN WILD-TYPE   10  310
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                2                10
  YES              69               310
D10V11, continuous
D10V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q GAIN MUTATED    60   1   1   1
  5Q GAIN WILD-TYPE 257   6   3  17
D10V13, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  R0              60               257
  R1               1                 6
  R2               1                 3
  RX               1                17

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    56  24
  6P GAIN WILD-TYPE 179  98
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               80               277 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               24                98 
$`6P GAIN MUTATED`
TCGA-18-3409 TCGA-21-1072 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 
       79.46        99.16        34.78        31.69       119.80         8.78 
TCGA-21-5787 TCGA-22-1002 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-5482 
       10.82         4.31        34.75        32.02        19.30        11.74 
TCGA-33-4533 TCGA-33-4587 TCGA-33-4589 TCGA-34-2609 TCGA-34-5928 TCGA-34-7107 
      114.05        54.44        10.98        31.23         5.52         1.08 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5022 
        7.46         7.82         6.81         0.39        44.71        55.17 
TCGA-43-2578 TCGA-43-5670 TCGA-43-6770 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 
       22.49        18.05        10.19        13.87         5.42        30.31 
TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7730 TCGA-56-8629 TCGA-56-A49D 
       28.93         2.04         1.02         0.20         1.12         0.99 
TCGA-58-8387 TCGA-58-8393 TCGA-58-A46K TCGA-60-2703 TCGA-60-2714 TCGA-60-2715 
       13.25         0.66        34.36        96.82        50.33        35.34 
TCGA-60-2719 TCGA-60-2725 TCGA-66-2734 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 
       42.61        26.79        43.10         2.01         0.99        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2791 
        2.01         1.02         7.07         2.01         3.98         5.03 
TCGA-66-2793 TCGA-68-8251 TCGA-77-7141 TCGA-77-7142 TCGA-77-7465 TCGA-77-8130 
       10.06         3.12         0.49        42.25        15.75        82.92 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6798 TCGA-85-7699 TCGA-85-7843 TCGA-85-8049 
        0.33         0.36         1.12         0.03         1.15         1.97 
TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8353 TCGA-85-8582 
        0.53         1.18         0.43         1.45         1.78         0.13 
TCGA-85-8664 TCGA-85-A4QR TCGA-94-7943 TCGA-98-7454 TCGA-98-8022 TCGA-LA-A446 
        0.10         0.82         4.70         8.42         7.33         1.18 
TCGA-MF-A522 TCGA-NC-A5HE 
        3.02        56.61 

$`6P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       46.88        70.13        60.89        15.55       122.43         9.30 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        29.85        21.73        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
        7.33        14.93        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       38.17        13.12         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       79.20        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        7.63        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       14.07        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       28.96        32.84        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 
       10.82         7.73        14.07        22.95         4.96         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-5819 TCGA-39-5011 
        0.43         0.39         6.54         8.09         3.39        47.80 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       74.07        68.58        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        17.06        24.59        13.12        27.02        11.74 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       11.47        12.36        12.46         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        1.58        66.51         6.64         6.35         2.93         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 
       10.65         0.39         0.39        29.95        17.79         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       27.45         0.10         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.32         0.85         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BX TCGA-56-A4BY 
        1.18         2.07         0.56         0.53         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 
        1.02         0.13         0.26         0.03        12.43         8.94 
TCGA-58-8391 TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
       44.09        16.47        36.59        17.72        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        37.94        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2716 
       49.48        66.51        41.39         9.01        56.91        48.49 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 
        3.16        32.28        29.85        35.90        23.57        11.77 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       16.96         2.01        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
        0.99        20.98         0.99         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 
       19.00         3.02        19.00        12.03        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       11.18        89.95        20.78        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8139 TCGA-77-8144 
       46.78         6.51        86.76        53.95       104.09        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
        9.63        55.33        35.90        30.81        23.44         0.79 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.59         0.33         1.61         1.25         1.97         0.85 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        1.41         0.46         0.36         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        2.20         2.01         0.66         0.72         0.66         0.89 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.46         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        1.55         2.93         0.59         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 
        0.16        39.88        44.15         6.18         6.90         2.73 
TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG 
       13.58        10.13         7.30         1.15        14.76        50.86 
TCGA-NC-A5HI 
       37.32 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.03              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           119.80            173.79 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
            7.395            12.460 
[1] "0.0 - 119.8 (7.4)"  "0.0 - 173.8 (12.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D11V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P GAIN MUTATED         0       13       28        1        10        13
  6P GAIN WILD-TYPE       1       54      103        0        35        52
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6P GAIN MUTATED           12          6        1
  6P GAIN WILD-TYPE         41         14        4
D11V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED    16  57   6   6
  6P GAIN WILD-TYPE  76 182  36  12
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1              16                76
  T2              57               182
  T3               6                36
  T4               6                12
                   vv
clus                 N0  N1  N2  N3
  6P GAIN MUTATED    59  18   6   1
  6P GAIN WILD-TYPE 186  85  27   4
D11V5, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0              59               186
  N1              18                85
  N2               6                27
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6P GAIN MUTATED    76   1   8
  6P GAIN WILD-TYPE 257   4  39
D11V6, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  M0              76               257
  M1               1                 4
  MX               8                39
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    19  66
  6P GAIN WILD-TYPE  79 227
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     19   66
  6P GAIN WILD-TYPE   79  227
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              19                79
  MALE                66               227
D11V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                       3
  6P GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P GAIN MUTATED                                        1
  6P GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P GAIN MUTATED                                         1
  6P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P GAIN MUTATED                                                            80
  6P GAIN WILD-TYPE                                                         293
D11V9, multiclass
                                                             clus
vv                                                            6P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              80
                                                             clus
vv                                                            6P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               293
D11V10, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     3  82
  6P GAIN WILD-TYPE   9 297
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      3   82
  6P GAIN WILD-TYPE    9  297
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                3                 9
  YES              82               297
D11V11, continuous
D11V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P GAIN MUTATED    70   3   1   2
  6P GAIN WILD-TYPE 247   4   3  16
D11V13, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  R0              70               247
  R1               3                 4
  R2               1                 3
  RX               2                16

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    50  21
  6Q GAIN WILD-TYPE 185 101
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               71               286 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               21               101 
$`6Q GAIN MUTATED`
TCGA-21-1072 TCGA-21-1082 TCGA-21-1083 TCGA-21-5787 TCGA-22-4605 TCGA-22-5477 
       99.16       119.80         8.78        10.82        32.02        44.22 
TCGA-22-5482 TCGA-22-5483 TCGA-33-4533 TCGA-33-4547 TCGA-33-4587 TCGA-33-4589 
       11.74        18.84       114.05        43.10        54.44        10.98 
TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-43-2578 
        1.08         7.82         6.81         0.39        44.71        22.49 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6770 TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 
       11.74        18.05        10.19        13.87         5.42        30.31 
TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7822 TCGA-56-A49D 
        8.75        28.93         2.04         1.02         0.03         0.99 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8393 TCGA-58-A46K TCGA-60-2703 TCGA-60-2714 
        0.03        13.25         0.66        34.36        96.82        50.33 
TCGA-60-2715 TCGA-60-2719 TCGA-60-2725 TCGA-66-2734 TCGA-66-2757 TCGA-66-2759 
       35.34        42.61        26.79        43.10         0.99        25.02 
TCGA-66-2765 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 TCGA-66-2786 TCGA-66-2789 
        2.01         7.07         2.01         3.98        25.97         4.04 
TCGA-66-2793 TCGA-68-8251 TCGA-77-7142 TCGA-77-7465 TCGA-77-8130 TCGA-85-6560 
       10.06         3.12        42.25        15.75        82.92         0.36 
TCGA-85-6798 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8049 TCGA-85-8276 
        1.12         0.03         1.15         1.97         1.97         0.43 
TCGA-85-8287 TCGA-85-8352 TCGA-85-8353 TCGA-85-8664 TCGA-85-8666 TCGA-94-7943 
        1.45         2.20         1.78         0.10         0.46         4.70 
TCGA-98-7454 TCGA-98-8022 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        8.42         7.33         1.18         3.02        56.61 

$`6Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.69       122.43         9.30        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.73        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       13.12        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60         0.79        54.28        71.34        79.20 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 
       30.08        62.86        56.32        16.60         7.63        97.94 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-33-6738 
      173.79       103.53       141.34        14.07        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-5819 TCGA-39-5011 
        0.39         6.54         8.09         7.46         3.39        47.80 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       35.70        17.88        17.06        24.59        13.12        27.02 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       11.47        12.36        12.46         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        1.58        66.51         6.64         6.35         2.93         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 
       10.65         0.39         0.39        29.95        17.79        27.45 
TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        0.10         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.85         0.20         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        1.02         0.13         0.26        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       16.47        36.59        17.72        21.07         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2716 TCGA-60-2720 
       66.51        41.39         9.01        56.91        48.49         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 
       32.28        29.85        35.90        23.57        11.77        16.96 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
        0.99        20.98         0.99         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       23.01        19.00         3.02        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 
       24.95         1.94        40.01        22.98        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.94         8.02        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       11.18        89.95        20.78         0.49        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8139 
        0.16        46.78         6.51        86.76        53.95       104.09 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB 
       27.39         9.63        55.33        35.90         0.33        30.81 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 
       23.44         0.79         0.59         0.33         1.61         1.25 
TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 
        0.85         0.53         1.41         0.46         1.18         0.36 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.78         1.97         1.81         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
        0.66         0.89         0.13         0.46         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         1.55         2.93         0.59 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        3.29         8.02        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 
        5.26         2.27         2.86         0.16        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH 
        6.18         6.90         2.73        13.58        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76        50.86        37.32 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.03              0.10 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           119.80            173.79 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
            8.750            12.395 
[1] "0.0 - 119.8 (8.8)"  "0.1 - 173.8 (12.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"6Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D12V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q GAIN MUTATED         0       12       28        1         8        10
  6Q GAIN WILD-TYPE       1       55      103        0        37        55
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6Q GAIN MUTATED            8          6        1
  6Q GAIN WILD-TYPE         45         14        4
D12V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED    16  48   5   5
  6Q GAIN WILD-TYPE  76 191  37  13
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1              16                76
  T2              48               191
  T3               5                37
  T4               5                13
                   vv
clus                 N0  N1  N2  N3
  6Q GAIN MUTATED    50  17   4   1
  6Q GAIN WILD-TYPE 195  86  29   4
D12V5, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0              50               195
  N1              17                86
  N2               4                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6Q GAIN MUTATED    65   1   8
  6Q GAIN WILD-TYPE 268   4  39
D12V6, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  M0              65               268
  M1               1                 4
  MX               8                39
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    16  58
  6Q GAIN WILD-TYPE  82 235
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     16   58
  6Q GAIN WILD-TYPE   82  235
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              16                82
  MALE                58               235
D12V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                       2
  6Q GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q GAIN MUTATED                                        0
  6Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q GAIN MUTATED                                         1
  6Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q GAIN MUTATED                                                            71
  6Q GAIN WILD-TYPE                                                         302
D12V9, multiclass
                                                             clus
vv                                                            6Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              71
                                                             clus
vv                                                            6Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               302
D12V10, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     3  71
  6Q GAIN WILD-TYPE   9 308
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      3   71
  6Q GAIN WILD-TYPE    9  308
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                3                 9
  YES              71               308
D12V11, continuous
D12V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q GAIN MUTATED    61   2   1   3
  6Q GAIN WILD-TYPE 256   5   3  15
D12V13, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  R0              61               256
  R1               2                 5
  R2               1                 3
  RX               3                15

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED   115  53
  7P GAIN WILD-TYPE 120  69
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              168               189 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               53                69 
$`7P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 
       24.92        43.76         6.15        90.51         3.02       119.54 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 
       99.16        70.13        60.89        31.69         9.30        88.08 
TCGA-21-5784 TCGA-22-0944 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 
       29.85         7.33         1.74        14.10        20.45        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 
       24.13         0.56        38.17        13.12        32.02        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5482 
       64.90        63.52        44.22         0.79        54.28        11.74 
TCGA-22-5483 TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 
       18.84        56.32       114.05        97.94       173.79       103.53 
TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 
       14.07        10.98         2.63        28.96        31.23        50.24 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-37-3783 
       32.68         9.04         7.73        14.07         5.52         3.95 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        0.39         8.09         6.81         0.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-2576 
       44.71        68.58        27.35        15.58        35.70        24.59 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       13.12        27.02        11.74        11.47        18.05        12.46 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
        5.42         3.78         1.58         9.96        10.65         0.39 
TCGA-51-4081 TCGA-52-7809 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
       29.95         5.42         0.99         0.99         1.45         0.85 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 TCGA-56-A4BX TCGA-58-8391 TCGA-58-8392 
        5.82         1.18         0.56         1.51        44.09        16.47 
TCGA-58-8393 TCGA-58-A46N TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 
        0.66        17.72        37.94        92.71        80.42        49.48 
TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 
       41.39        50.33        42.61        29.85        35.90        11.77 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2759 
       43.10         2.01        21.07         0.99         0.92        25.02 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        0.99         1.02         2.01        23.01        19.00         2.01 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       12.00         1.94        40.01         4.01        49.05         2.73 
TCGA-68-8250 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7338 TCGA-77-7463 
        8.02        23.28        11.18        20.78         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 
       15.75         6.51        86.76        53.95        82.92       104.09 
TCGA-77-8148 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
        9.63         0.33        30.81         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 
        0.33         1.15         1.25         1.97         1.97         0.53 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8352 TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 
        1.18         0.43         2.20         2.01         0.10         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-7769 TCGA-90-A4ED 
        0.82         0.62         0.79         0.43         0.59         8.02 
TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 TCGA-96-7545 TCGA-98-8021 TCGA-98-8023 
        3.48         5.26         0.16        44.15        13.58        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76         3.02        56.61        50.86        37.32 

$`7P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 
       12.16         4.80        59.51        28.34         1.61         2.79 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 
       27.16        46.88        34.78        15.55       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
        8.78        31.63        21.73        10.82        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
       14.93         4.31        64.21        27.02        48.82        48.33 
TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 TCGA-22-5480 
       34.75        19.30         9.53        11.77        14.60        71.34 
TCGA-22-5481 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 
       79.20        30.08        62.86        16.60         7.63        43.10 
TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
      141.34        54.44        19.76        26.99        61.61        31.50 
TCGA-34-2608 TCGA-34-5232 TCGA-34-5239 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       32.84        51.78        10.82        22.95         4.96         1.08 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5022 
        0.43         6.54         7.46         7.82         3.39        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 
       70.03        60.76         1.71        24.33         1.94        36.39 
TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-6143 TCGA-43-6770 
       35.64        17.88        17.06        22.49        12.36        10.19 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-6026 
        6.97        66.51         6.64         6.35         2.93        13.87 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        17.79        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 
        0.10         2.04         1.02         0.43         1.32         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 
        0.03         1.35         1.78         2.07         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.99         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 
       13.25        12.43         8.94        34.36        36.59        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2707 TCGA-60-2710 
        3.58        12.23        10.22        96.82        21.70        66.51 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
        9.01        56.91        35.34        48.49         3.16        32.28 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
       23.57        26.79        16.96         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 TCGA-66-2773 
        0.99        20.98         2.01         2.01         7.07         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 TCGA-66-2788 
       19.00        12.03         3.98        24.95        25.97        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.64         6.94         3.12        29.56        73.08        75.09 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-8144 
       89.95         0.49        42.25        70.09       106.95        27.39 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7698 TCGA-85-7699 
       55.33        35.90        23.44         0.36         1.61         0.03 
TCGA-85-8048 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 
        0.85         1.41         0.46         0.36         1.45         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.97         1.81         1.78         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.89         0.13         0.46        24.89         1.55         2.93 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        3.29        10.88         2.70         4.01         2.27         2.86 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
        4.70        39.88         6.18         6.90         8.42         2.73 
TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
        7.33         7.30         1.18 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.10              0.03 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           173.79            141.34 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
            12.74             10.22 
[1] "0.1 - 173.8 (12.7)" "0.0 - 141.3 (10.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7P GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7P GAIN MUTATED" 
[1] "hr=" "1.4"
D13V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7P GAIN MUTATED         0       23       67        0        21        39
  7P GAIN WILD-TYPE       1       44       64        1        24        26
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7P GAIN MUTATED           23          6        3
  7P GAIN WILD-TYPE         30         14        2
D13V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P GAIN MUTATED    34 119  26   5
  7P GAIN WILD-TYPE  58 120  16  13
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              34                58
  T2             119               120
  T3              26                16
  T4               5                13
                   vv
clus                 N0  N1  N2  N3
  7P GAIN MUTATED   113  56  12   1
  7P GAIN WILD-TYPE 132  47  21   4
D13V5, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0             113               132
  N1              56                47
  N2              12                21
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7P GAIN MUTATED   160   3  18
  7P GAIN WILD-TYPE 173   2  29
D13V6, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  M0             160               173
  M1               3                 2
  MX              18                29
D13V7, binary
                   cls
clus                  0   1
  7P GAIN MUTATED    41 143
  7P GAIN WILD-TYPE  57 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED     41  143
  7P GAIN WILD-TYPE   57  150
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE              41                57
  MALE               143               150
D13V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                       6
  7P GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P GAIN MUTATED                                        1
  7P GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P GAIN MUTATED                                         0
  7P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P GAIN MUTATED                                                           177
  7P GAIN WILD-TYPE                                                         196
D13V9, multiclass
                                                             clus
vv                                                            7P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             177
                                                             clus
vv                                                            7P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               196
D13V10, binary
                   cls
clus                  0   1
  7P GAIN MUTATED     4 180
  7P GAIN WILD-TYPE   8 199
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      4  180
  7P GAIN WILD-TYPE    8  199
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                4                 8
  YES             180               199
D13V11, continuous
D13V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P GAIN MUTATED   155   2   1   7
  7P GAIN WILD-TYPE 162   5   3  11
D13V13, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  R0             155               162
  R1               2                 5
  R2               1                 3
  RX               7                11

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED   106  52
  7Q GAIN WILD-TYPE 129  70
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              158               199 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               52                70 
$`7Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-4083 TCGA-18-4721 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 
       24.92         6.15        90.51       119.54        70.13        60.89 
TCGA-21-1077 TCGA-21-1079 TCGA-21-1081 TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI 
       34.78        31.69         9.30        88.08        10.82        32.19 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        14.10        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-5471 TCGA-22-5472 
        0.56        38.17        13.12        32.02        31.73        64.90 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5483 TCGA-22-5491 
       63.52        44.22         0.79        54.28        18.84        56.32 
TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 
       16.60       114.05        97.94        14.07        10.98        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 
        2.63        61.61        28.96        31.23        50.24         9.04 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4133 
        7.73        14.07         5.52         1.08         3.95         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 
        6.81         0.39        47.80        44.71        68.58        60.76 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       27.35        15.58        35.70        27.02        11.74        11.47 
TCGA-43-6647 TCGA-43-6773 TCGA-43-7657 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
       12.46         3.78         1.58         9.96        10.65         0.39 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
       29.95         5.42        30.31         0.99         0.99         1.45 
TCGA-56-7582 TCGA-56-8504 TCGA-56-A4BX TCGA-58-8386 TCGA-58-8392 TCGA-58-8393 
        0.85         5.82         1.51         0.03        16.47         0.66 
TCGA-58-A46K TCGA-58-A46N TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 
       34.36        17.72        37.94        92.71        80.42        49.48 
TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 
       41.39        50.33        42.61        29.85        35.90        11.77 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2755 TCGA-66-2758 TCGA-66-2763 
       43.10         2.01        21.07         0.92        20.98         0.99 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2782 
        1.02         2.01        23.01        19.00         2.01        12.00 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        1.94        40.01        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-8250 TCGA-77-6845 TCGA-77-7141 TCGA-77-7338 
       49.05         2.73         8.02        23.28         0.49         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8130 TCGA-77-8148 
       46.78        15.75         6.51        53.95        82.92         9.63 
TCGA-77-8153 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 
       55.33         0.33         0.79         1.12         0.59         1.15 
TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        1.97         1.97         0.53         1.41         1.18         0.43 
TCGA-85-8352 TCGA-85-8354 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L 
        2.20         2.01         0.46         0.82         0.62         0.43 
TCGA-90-7769 TCGA-90-A4ED TCGA-92-7341 TCGA-96-7545 TCGA-96-8169 TCGA-98-8021 
        0.59         8.02         3.48        44.15         6.18        13.58 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         1.15        14.76         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

$`7Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       12.16         4.80        59.51        28.34         1.61        43.76 
TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1078 
        2.79         3.02        27.16        46.88        99.16        15.55 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 
      122.43       119.80         8.78        31.63        29.85        21.73 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 
       19.99         7.33        14.93         4.31        64.21        27.02 
TCGA-22-1017 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 
       48.82        34.75        19.30         9.53        11.77        14.60 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-33-4532 
       71.34        79.20        11.74        30.08        62.86         7.63 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 
       43.10       173.79       103.53       141.34        54.44        19.76 
TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5927 
       31.50        32.84        51.78        32.68        10.82        22.95 
TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        4.96         0.43         0.39         6.54         8.09         7.46 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 
        3.39        74.07        55.17        70.03         1.71        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
        1.94        36.39        35.64        17.88        17.06        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 
       22.49        13.12        18.05        12.36        10.19         5.42 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-6026 
        6.97        66.51         6.64         6.35         2.93        13.87 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        0.39        17.79         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 
        2.04         1.02         0.43         1.32         0.20         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         0.99         0.99         1.02         0.13         0.26 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46L TCGA-60-2695 
       13.25        12.43         8.94        44.09        36.59        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2707 TCGA-60-2710 
        3.58        12.23        10.22        96.82        21.70        66.51 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
        9.01        56.91        35.34        48.49         3.16        32.28 
TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       23.57        26.79        16.96         0.99         1.02         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2768 TCGA-66-2769 
        0.99         0.99        25.02         2.01         2.01         7.07 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2786 
        3.02        19.00        12.03         3.98        24.95        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-68-7756 TCGA-68-7757 
       22.98         4.04        22.98         5.03         6.64         6.94 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 
        3.12        29.56        73.08        75.09        11.18        89.95 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-8008 TCGA-77-8139 
       20.78        42.25        70.09       106.95        86.76       104.09 
TCGA-77-8144 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 
       27.39        35.90        30.81        23.44         0.36         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8071 TCGA-85-8277 
        1.61         0.03         1.25         0.85         0.46         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 
        1.45         1.78         1.97         1.81         1.78         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL 
        0.72         0.66         0.89         0.13         0.10         0.46 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE 
        0.79        24.89         1.55         2.93         3.29        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 
        4.70        39.88         6.90         8.42         2.73         7.33 
TCGA-J1-A4AH 
        7.30 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.03              0.03 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           119.54            173.79 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
            13.35             10.19 
[1] "0.0 - 119.5 (13.3)" "0.0 - 173.8 (10.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7Q GAIN MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-NC-A5HI 
  "7Q GAIN MUTATED" 
[1] "hr=" "1.2"
D14V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7Q GAIN MUTATED         1       21       58        1        18        33
  7Q GAIN WILD-TYPE       0       46       73        0        27        32
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7Q GAIN MUTATED           26          9        4
  7Q GAIN WILD-TYPE         27         11        1
D14V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q GAIN MUTATED    34 106  25   8
  7Q GAIN WILD-TYPE  58 133  17  10
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              34                58
  T2             106               133
  T3              25                17
  T4               8                10
                   vv
clus                 N0  N1  N2  N3
  7Q GAIN MUTATED   103  52  16   1
  7Q GAIN WILD-TYPE 142  51  17   4
D14V5, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0             103               142
  N1              52                51
  N2              16                17
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7Q GAIN MUTATED   150   4  16
  7Q GAIN WILD-TYPE 183   1  31
D14V6, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  M0             150               183
  M1               4                 1
  MX              16                31
D14V7, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    38 135
  7Q GAIN WILD-TYPE  60 158
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     38  135
  7Q GAIN WILD-TYPE   60  158
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE              38                60
  MALE               135               158
D14V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                       6
  7Q GAIN WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q GAIN MUTATED                                        1
  7Q GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q GAIN MUTATED                                         0
  7Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q GAIN MUTATED                                                           166
  7Q GAIN WILD-TYPE                                                         207
D14V9, multiclass
                                                             clus
vv                                                            7Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             166
                                                             clus
vv                                                            7Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               207
D14V10, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED     4 169
  7Q GAIN WILD-TYPE   8 210
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED      4  169
  7Q GAIN WILD-TYPE    8  210
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO                4                 8
  YES             169               210
D14V11, continuous
D14V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q GAIN MUTATED   144   2   1   5
  7Q GAIN WILD-TYPE 173   5   3  13
D14V13, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  R0             144               173
  R1               2                 5
  R2               1                 3
  RX               5                13

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    64  34
  8P GAIN WILD-TYPE 171  88
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               98               259 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               34                88 
$`8P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3416 
        4.47        79.46         4.80        46.52        13.02        28.34 
TCGA-18-3421 TCGA-21-1070 TCGA-21-1075 TCGA-21-1082 TCGA-21-5783 TCGA-21-5784 
       43.76       119.54        70.13       119.80        88.08        29.85 
TCGA-21-5787 TCGA-22-1011 TCGA-22-1016 TCGA-22-4595 TCGA-22-4596 TCGA-22-4605 
       10.82         1.74        27.02        24.13         0.56        32.02 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5479 TCGA-22-5482 TCGA-22-5489 TCGA-33-4532 
       64.90        63.52        54.28        11.74        62.86         7.63 
TCGA-33-4533 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-34-2605 TCGA-34-5231 
      114.05       141.34        54.44        19.76        28.96        50.24 
TCGA-34-5232 TCGA-34-5239 TCGA-34-5928 TCGA-34-7107 TCGA-37-4132 TCGA-37-5819 
       51.78        10.82         5.52         1.08         7.46         3.39 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5034 TCGA-39-5040 
       55.17        70.03         1.71        24.33        36.39        17.06 
TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-52-7811 TCGA-56-1622 
       22.49        11.74        18.05        12.46         8.75        28.93 
TCGA-56-7730 TCGA-56-8622 TCGA-56-A49D TCGA-56-A4ZK TCGA-58-8386 TCGA-60-2695 
        0.20         1.78         0.99         0.13         0.03        21.07 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
       80.42         9.01        50.33        42.61         3.16        29.85 
TCGA-60-2725 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 TCGA-66-2767 
       26.79        21.07         0.99         0.99         0.99         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 
       23.01         3.02         2.01        22.98         4.04        10.06 
TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 
       49.05         6.64         3.12        89.95         0.49        70.09 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 
       46.78        15.75         6.51        23.44         0.36         0.03 
TCGA-85-8052 TCGA-85-8287 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.53         1.45         0.66         0.89         0.13         0.10 
TCGA-85-A513 TCGA-90-7769 TCGA-92-7340 TCGA-94-7943 TCGA-96-8169 TCGA-98-8023 
        0.79         0.59         2.70         4.70         6.18        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 
        1.15        14.76 

$`8P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3412 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 
       12.16        81.07        11.34        59.51        24.92         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       99.16        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
        9.30         8.78        31.63        21.73        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-1017 
        7.33        14.93         4.31        64.21        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        48.33        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5474 TCGA-22-5477 
       19.30         9.53        11.77        31.73        14.60        44.22 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 
        0.79        71.34        79.20        18.84        30.08        56.32 
TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 
       16.60        97.94        43.10       173.79       103.53        14.07 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       10.98        26.99         2.63        61.61        31.50        32.84 
TCGA-34-2609 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       31.23        32.68         9.04         7.73        14.07        22.95 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5027 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
       68.58        60.76         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
       35.70        17.88        24.59        13.12        27.02        11.47 
TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.36        10.19         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 
       66.51         6.64         6.35         2.93         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.87         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       30.31        27.45         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        0.43         0.99         1.45         1.32         0.85         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         5.82         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 
        1.12         1.51         0.99         1.02         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K 
       12.43         8.94        44.09        16.47         0.66        34.36 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       36.59        17.72         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        92.71        21.70        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 
       56.91        35.34        48.49        32.28        35.90        23.57 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 
       11.77        16.96        43.10         2.01         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
        2.01         7.07        19.00        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2790 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 
        5.03        30.02        54.08         4.01         2.73         6.94 
TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        8.02        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-8008 TCGA-77-8009 
       20.78        42.25       106.95         0.16        86.76        53.95 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       82.92       104.09        27.39         9.63        55.33        35.90 
TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33        30.81         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 
        1.41         0.46         1.18         0.43         0.36         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L 
        0.72         0.46         0.46         0.82         0.62         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         1.55         2.93         3.29         8.02        10.88 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       39.88        44.15         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        7.33         7.30         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.03              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           141.34            173.79 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
            12.10             11.47 
[1] "0.0 - 141.3 (12.1)" "0.0 - 173.8 (11.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"8P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D15V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P GAIN MUTATED         0       10       39        1         7        20
  8P GAIN WILD-TYPE       1       57       92        0        38        45
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8P GAIN MUTATED           18          8        4
  8P GAIN WILD-TYPE         35         12        1
D15V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P GAIN MUTATED    17  71  10  10
  8P GAIN WILD-TYPE  75 168  32   8
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1              17                75
  T2              71               168
  T3              10                32
  T4              10                 8
                   vv
clus                 N0  N1  N2  N3
  8P GAIN MUTATED    63  29  11   2
  8P GAIN WILD-TYPE 182  74  22   3
D15V5, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0              63               182
  N1              29                74
  N2              11                22
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8P GAIN MUTATED    95   4   8
  8P GAIN WILD-TYPE 238   1  39
D15V6, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  M0              95               238
  M1               4                 1
  MX               8                39
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    32  76
  8P GAIN WILD-TYPE  66 217
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     32   76
  8P GAIN WILD-TYPE   66  217
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              32                66
  MALE                76               217
D15V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                       2
  8P GAIN WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P GAIN MUTATED                                        1
  8P GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P GAIN MUTATED                                         1
  8P GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P GAIN MUTATED                                                           104
  8P GAIN WILD-TYPE                                                         269
D15V9, multiclass
                                                             clus
vv                                                            8P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             104
                                                             clus
vv                                                            8P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               269
D15V10, binary
                   cls
clus                  0   1
  8P GAIN MUTATED     7 101
  8P GAIN WILD-TYPE   5 278
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      7  101
  8P GAIN WILD-TYPE    5  278
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                7                 5
  YES             101               278
D15V11, continuous
D15V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P GAIN MUTATED    93   2   0   1
  8P GAIN WILD-TYPE 224   5   4  17
D15V13, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  R0              93               224
  R1               2                 5
  R2               0                 4
  RX               1                17

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED   115  65
  8Q GAIN WILD-TYPE 120  57
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              180               177 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               65                57 
$`8Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-5595 
       28.34        24.92         1.61        43.76         6.15        27.16 
TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 
      119.54        70.13        60.89        31.69         9.30       119.80 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        8.78        88.08        29.85        21.73        10.82        32.19 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4595 TCGA-22-4596 TCGA-22-4605 
        1.74        27.02        48.82        24.13         0.56        32.02 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
        9.53        11.77        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
        0.79        54.28        79.20        11.74        30.08        62.86 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
        7.63       114.05       141.34        54.44        10.98        19.76 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5239 TCGA-34-5241 
       28.96        31.23        50.24        51.78        10.82        14.07 
TCGA-34-5928 TCGA-37-3789 TCGA-37-4132 TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 
        5.52         0.43         7.46         3.39        74.07        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 
       70.03         1.71        24.33        36.39        15.58        35.70 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.06        24.59        22.49        13.12        11.74        11.47 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-7657 TCGA-43-8118 TCGA-46-3768 
       18.05        12.46        10.19         1.58         2.93         9.96 
TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       30.31         8.75        28.93         0.10         2.04         1.02 
TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX 
        0.03         5.82         1.78         0.53         0.99         1.51 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8392 TCGA-58-8393 
        0.13         0.26         0.03        13.25        16.47         0.66 
TCGA-60-2695 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       21.07        10.22        96.82        37.94        21.70        80.42 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
        9.01        56.91        50.33        42.61         3.16        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 
       35.90        23.57        26.79        11.77        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 
        0.99         1.02         0.92         0.99         0.99         0.99 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2782 
        2.01         7.07        23.01         3.02         2.01        12.00 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 
       22.98         4.04        22.98        30.02        10.06        49.05 
TCGA-68-7756 TCGA-68-8251 TCGA-77-6844 TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 
        6.64         3.12        75.09        89.95         0.49        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 
      106.95         0.16        46.78        15.75         6.51        53.95 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 
       82.92       104.09         9.63        23.44         0.36         1.12 
TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8287 
        0.03         1.15         1.97         0.53         1.41         1.45 
TCGA-85-8350 TCGA-85-8353 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        1.97         1.78         0.66         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4QR TCGA-85-A513 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        0.46         0.82         0.79         2.93         0.59         2.70 
TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 
        3.48         0.16         4.70         6.18         6.90         2.73 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG 
        7.33        10.13         7.30         1.15        14.76        50.86 

$`8Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       12.16        81.07        59.51         2.79        90.51         3.02 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-5782 
       46.88        99.16        34.78        15.55       122.43        31.63 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 
       19.99         7.33        14.93         4.31        64.21        14.10 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       20.45        35.08        48.33        38.17        34.75        13.12 
TCGA-22-4607 TCGA-22-5471 TCGA-22-5480 TCGA-22-5483 TCGA-22-5491 TCGA-22-5492 
       19.30        31.73        71.34        18.84        56.32        16.60 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6738 
       97.94        43.10       173.79       103.53        14.07        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5234 TCGA-34-5236 
        2.63        61.61        31.50        32.84        32.68         9.04 
TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
        7.73        22.95         4.96         1.08         3.95         0.39 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        6.54         8.09         7.82         6.81         0.39        47.80 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 
       44.71        68.58        60.76         1.94        27.35        35.64 
TCGA-39-5039 TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       17.88        27.02        12.36         5.42         3.78         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
       66.51         6.64         6.35        10.65        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-7221 
        0.39        29.95        17.79         5.42        27.45         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-8503 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4BY 
        1.35         1.18         2.07         0.56         1.12         0.99 
TCGA-56-A4ZJ TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46K TCGA-58-A46L 
        1.02        12.43         8.94        44.09        34.36        36.59 
TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 
       17.72         3.58        12.23        92.71        49.48        66.51 
TCGA-60-2711 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-66-2727 TCGA-66-2737 
       41.39        35.34        48.49        32.28        16.96         2.01 
TCGA-66-2754 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        2.01        20.98        25.02         2.01         1.02         2.01 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
       19.00        19.00        12.03         3.98        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 
       25.97        40.01         5.03        54.08         4.01         2.73 
TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 
        6.94         8.02        29.56        73.08        23.28        11.18 
TCGA-77-7140 TCGA-77-7142 TCGA-77-8008 TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 
       20.78        42.25        86.76        27.39        55.33        35.90 
TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.33        30.81         0.79         0.59         0.33         1.61 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.25         0.85         1.97         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 
        0.36         1.78         1.81         2.20         2.01         0.66 
TCGA-85-8479 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.72         0.46         0.62         0.43        24.89         1.55 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         8.02        10.88         4.01         5.26         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 TCGA-LA-A446 
        2.86        39.88        44.15         8.42        13.58         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        3.02        56.61        37.32 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.03              0.20 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           141.34            173.79 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           11.605            12.160 
[1] "0.0 - 141.3 (11.6)" "0.2 - 173.8 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-NC-A5HI 
"8Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D16V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q GAIN MUTATED         1       25       68        0        18        40
  8Q GAIN WILD-TYPE       0       42       63        1        27        25
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8Q GAIN MUTATED           30         11        5
  8Q GAIN WILD-TYPE         23          9        0
D16V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q GAIN MUTATED    37 127  23  12
  8Q GAIN WILD-TYPE  55 112  19   6
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              37                55
  T2             127               112
  T3              23                19
  T4              12                 6
                   vv
clus                 N0  N1  N2  N3
  8Q GAIN MUTATED   115  63  15   2
  8Q GAIN WILD-TYPE 130  40  18   3
D16V5, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0             115               130
  N1              63                40
  N2              15                18
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8Q GAIN MUTATED   172   5  20
  8Q GAIN WILD-TYPE 161   0  27
D16V6, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  M0             172               161
  M1               5                 0
  MX              20                27
D16V7, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    54 145
  8Q GAIN WILD-TYPE  44 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     54  145
  8Q GAIN WILD-TYPE   44  148
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE              54                44
  MALE               145               148
D16V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                       4
  8Q GAIN WILD-TYPE                                     8
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q GAIN MUTATED                                        2
  8Q GAIN WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q GAIN MUTATED                                         1
  8Q GAIN WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q GAIN MUTATED                                                           192
  8Q GAIN WILD-TYPE                                                         181
D16V9, multiclass
                                                             clus
vv                                                            8Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             192
                                                             clus
vv                                                            8Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               181
D16V10, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED     9 190
  8Q GAIN WILD-TYPE   3 189
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED      9  190
  8Q GAIN WILD-TYPE    3  189
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO                9                 3
  YES             190               189
D16V11, continuous
D16V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q GAIN MUTATED   168   5   0   6
  8Q GAIN WILD-TYPE 149   2   4  12
D16V13, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  R0             168               149
  R1               5                 2
  R2               0                 4
  RX               6                12

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    28  13
  9P GAIN WILD-TYPE 207 109
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               41               316 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               13               109 
$`9P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3416 TCGA-22-4604 TCGA-22-5481 TCGA-33-4532 
        4.47         4.80        28.34        13.12        79.20         7.63 
TCGA-33-4533 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-5239 
      114.05       173.79       141.34        14.07        10.98        10.82 
TCGA-34-5240 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 TCGA-39-5036 TCGA-43-6143 
        7.73         1.08         0.39         7.82        35.64        12.36 
TCGA-43-7658 TCGA-46-6025 TCGA-51-4079 TCGA-52-7622 TCGA-58-8386 TCGA-60-2695 
       66.51        10.65         0.39        17.79         0.03        21.07 
TCGA-60-2704 TCGA-60-2712 TCGA-60-2714 TCGA-60-2722 TCGA-66-2756 TCGA-66-2758 
       37.94         9.01        50.33        29.85         0.99        20.98 
TCGA-66-2767 TCGA-68-7755 TCGA-68-8250 TCGA-77-7465 TCGA-77-8007 TCGA-85-6561 
        2.01         2.73         8.02        15.75         6.51         0.79 
TCGA-85-7698 TCGA-85-8070 TCGA-85-8072 TCGA-85-8353 TCGA-92-8064 
        1.61         1.41         1.18         1.78         5.26 

$`9P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       21.73        10.82        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 
        4.31        64.21         1.74        14.10        27.02        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 
       16.60        97.94        43.10       103.53        54.44        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 
       31.23        50.24        51.78        32.68         9.04        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 
       22.95         5.52         4.96         3.95         0.43         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
        1.71        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        24.59        22.49        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       27.02        11.74        11.47        18.05        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97         1.58         6.64         6.35 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7809 
        2.93         9.96        13.87         0.39        29.95         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.85         0.20         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 
        1.51         0.99         1.02         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K 
       12.43         8.94        44.09        16.47         0.66        34.36 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       36.59        17.72         3.58        12.23        10.22        96.82 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       56.91        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 
       10.06        54.08         4.01        49.05         6.64         6.94 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 
        0.16        46.78        86.76        53.95        82.92       104.09 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB 
       27.39         9.63        55.33        35.90         0.33        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
       23.44         0.36         1.12         0.59         0.33         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        0.46         0.43         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.81         2.20         2.01         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.89         0.13         0.10         0.46         0.46         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.62         0.79         0.43        24.89         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        0.59         3.29         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        4.01         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.15         6.18         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.33        10.13         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.03              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           173.79            122.43 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            9.010            12.015 
[1] "0.0 - 173.8 (9.0)"  "0.0 - 122.4 (12.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "9P GAIN MUTATED"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D17V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9P GAIN MUTATED         0        5       13        1         5        11
  9P GAIN WILD-TYPE       1       62      118        0        40        54
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9P GAIN MUTATED            3          4        1
  9P GAIN WILD-TYPE         50         16        4
D17V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P GAIN MUTATED     8  29   3   3
  9P GAIN WILD-TYPE  84 210  39  15
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1               8                84
  T2              29               210
  T3               3                39
  T4               3                15
                   vv
clus                 N0  N1  N2  N3
  9P GAIN MUTATED    24  16   1   1
  9P GAIN WILD-TYPE 221  87  32   4
D17V5, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0              24               221
  N1              16                87
  N2               1                32
  N3               1                 4
                   vv
clus                 M0  M1  MX
  9P GAIN MUTATED    39   1   2
  9P GAIN WILD-TYPE 294   4  45
D17V6, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  M0              39               294
  M1               1                 4
  MX               2                45
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    12  31
  9P GAIN WILD-TYPE  86 262
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     12   31
  9P GAIN WILD-TYPE   86  262
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              12                86
  MALE                31               262
D17V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                       3
  9P GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P GAIN MUTATED                                        0
  9P GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P GAIN MUTATED                                         0
  9P GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P GAIN MUTATED                                                            40
  9P GAIN WILD-TYPE                                                         333
D17V9, multiclass
                                                             clus
vv                                                            9P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              40
                                                             clus
vv                                                            9P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               333
D17V10, binary
                   cls
clus                  0   1
  9P GAIN MUTATED     0  43
  9P GAIN WILD-TYPE  12 336
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      0   43
  9P GAIN WILD-TYPE   12  336
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                0                12
  YES              43               336
D17V11, continuous
D17V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P GAIN MUTATED    33   0   0   2
  9P GAIN WILD-TYPE 284   7   4  16
D17V13, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  R0              33               284
  R1               0                 7
  R2               0                 4
  RX               2                16

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    44  25
  9Q GAIN WILD-TYPE 191  97
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               69               288 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               25                97 
$`9Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3412 TCGA-18-3416 TCGA-21-1072 TCGA-21-1076 
        4.47         4.80        11.34        28.34        99.16        60.89 
TCGA-22-0940 TCGA-22-0944 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5477 
       19.99         7.33        38.17        13.12        11.77        44.22 
TCGA-22-5483 TCGA-33-4533 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       18.84       114.05       173.79       141.34        14.07        10.98 
TCGA-34-2596 TCGA-34-2600 TCGA-34-5239 TCGA-34-7107 TCGA-37-3792 TCGA-37-4133 
        2.63        61.61        10.82         1.08         0.39         7.82 
TCGA-39-5030 TCGA-39-5036 TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-7658 
        1.94        35.64        27.02        11.47        12.36        66.51 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7622 TCGA-52-7809 TCGA-56-7582 
        9.96        10.65         0.39        17.79         5.42         0.85 
TCGA-56-A4BX TCGA-58-8386 TCGA-58-8391 TCGA-60-2695 TCGA-60-2704 TCGA-60-2710 
        1.51         0.03        44.09        21.07        37.94        66.51 
TCGA-60-2711 TCGA-60-2722 TCGA-66-2744 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
       41.39        29.85         0.99         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2767 TCGA-66-2770 TCGA-66-2792 TCGA-68-7755 TCGA-77-7141 
       25.02         2.01        23.01        30.02         2.73         0.49 
TCGA-77-7335 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8144 TCGA-77-8153 
       70.09        15.75         6.51        53.95        27.39        55.33 
TCGA-85-7696 TCGA-85-7698 TCGA-85-7844 TCGA-85-8070 TCGA-85-8072 TCGA-85-8353 
        0.59         1.61         1.25         1.41         1.18         1.78 
TCGA-85-8580 TCGA-90-7769 TCGA-L3-A524 
        0.89         0.59        14.76 

$`9Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        46.52        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       24.92         1.61        43.76         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1077 
        3.02        27.16       119.54        46.88        70.13        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
       31.63        88.08        29.85        21.73        10.82        32.19 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       48.82        20.45        35.08        48.33        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 
       34.75        32.02        19.30         9.53        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       11.74        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 
       97.94        43.10       103.53        54.44        19.76        26.99 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        4.96         3.95         0.43         6.54         8.09         7.46 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       27.35        36.39        15.58        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 
       24.59        22.49        13.12        11.74        18.05        12.46 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 
       10.19         5.42         3.78         6.97         1.58         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7810 
        6.35         2.93        13.87         0.39        29.95        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 
        0.99         0.43         0.99         1.45         1.32         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         0.99         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 
        0.13         0.26        13.25        12.43         8.94        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
        0.66        34.36        36.59        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        96.82        92.71        21.70        80.42        49.48 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
        3.16        32.28        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10         2.01        21.07         1.02         2.01 
TCGA-66-2755 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
        0.92         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98         5.03        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
       49.05         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8008 TCGA-77-8130 
       42.25       106.95         0.16        46.78        86.76        82.92 
TCGA-77-8139 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH 
      104.09         9.63        35.90         0.33        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 
        0.36         0.79         1.12         0.33         0.03         1.15 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 
        1.97         0.85         1.97         0.53         0.46         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 
        2.01         0.66         0.72         0.66         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.46         0.46         0.82         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         1.55         2.93         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15         1.18         3.02        56.61        50.86        37.32 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.03              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           173.79            122.43 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
            11.77             11.74 
[1] "0.0 - 173.8 (11.8)" "0.0 - 122.4 (11.7)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED"   "9Q GAIN MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "9Q GAIN MUTATED"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"9Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D18V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9Q GAIN MUTATED         0        8       26        1         9        14
  9Q GAIN WILD-TYPE       1       59      105        0        36        51
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9Q GAIN MUTATED            7          5        1
  9Q GAIN WILD-TYPE         46         15        4
D18V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q GAIN MUTATED    16  46   5   4
  9Q GAIN WILD-TYPE  76 193  37  14
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1              16                76
  T2              46               193
  T3               5                37
  T4               4                14
                   vv
clus                 N0  N1  N2  N3
  9Q GAIN MUTATED    41  23   5   1
  9Q GAIN WILD-TYPE 204  80  28   4
D18V5, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0              41               204
  N1              23                80
  N2               5                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  9Q GAIN MUTATED    67   1   2
  9Q GAIN WILD-TYPE 266   4  45
D18V6, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  M0              67               266
  M1               1                 4
  MX               2                45
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    21  50
  9Q GAIN WILD-TYPE  77 243
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     21   50
  9Q GAIN WILD-TYPE   77  243
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              21                77
  MALE                50               243
D18V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                       3
  9Q GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q GAIN MUTATED                                        0
  9Q GAIN WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q GAIN MUTATED                                         0
  9Q GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q GAIN MUTATED                                                            68
  9Q GAIN WILD-TYPE                                                         305
D18V9, multiclass
                                                             clus
vv                                                            9Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              68
                                                             clus
vv                                                            9Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               305
D18V10, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED     0  71
  9Q GAIN WILD-TYPE  12 308
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      0   71
  9Q GAIN WILD-TYPE   12  308
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                0                12
  YES              71               308
D18V11, continuous
D18V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q GAIN MUTATED    62   0   0   1
  9Q GAIN WILD-TYPE 255   7   4  17
D18V13, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  R0              62               255
  R1               0                 7
  R2               0                 4
  RX               1                17

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    33  19
  10P GAIN WILD-TYPE 202 103
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                52                305 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                19                103 
$`10P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3416 TCGA-18-3417 TCGA-21-1070 TCGA-21-1083 TCGA-21-5783 
        4.47        28.34        24.92       119.54         8.78        88.08 
TCGA-21-5787 TCGA-22-0944 TCGA-22-1017 TCGA-22-5473 TCGA-33-4566 TCGA-33-6737 
       10.82         7.33        48.82        63.52       173.79        19.76 
TCGA-34-2609 TCGA-34-5928 TCGA-34-7107 TCGA-37-4133 TCGA-37-4141 TCGA-43-3394 
       31.23         5.52         1.08         7.82         0.39        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-46-6025 TCGA-52-7811 TCGA-56-7222 TCGA-56-A4BX 
       11.47        18.05        10.65         8.75         0.43         1.51 
TCGA-58-A46L TCGA-60-2698 TCGA-60-2712 TCGA-60-2724 TCGA-60-2726 TCGA-66-2756 
       36.59        10.22         9.01        23.57        11.77         0.99 
TCGA-66-2763 TCGA-66-2778 TCGA-66-2782 TCGA-66-2792 TCGA-77-7140 TCGA-77-7142 
        0.99        19.00        12.00        30.02        20.78        42.25 
TCGA-77-7463 TCGA-77-8148 TCGA-85-6560 TCGA-85-6561 TCGA-85-7843 TCGA-85-8350 
       46.78         9.63         0.36         0.79         1.15         1.97 
TCGA-85-8352 TCGA-85-8582 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L TCGA-90-7767 
        2.20         0.13         0.82         0.62         0.43         2.93 
TCGA-94-7943 TCGA-96-7545 TCGA-98-8022 TCGA-NC-A5HI 
        4.70        44.15         7.33        37.32 

$`10P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        59.51         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02        27.16        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
      119.80        31.63        29.85        21.73        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       14.93         4.31        64.21         1.74        14.10        27.02 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       31.73        64.90        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       56.32        16.60         7.63       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 
      103.53       141.34        14.07        54.44        10.98        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 
        2.63        61.61        31.50        28.96        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       22.95         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        8.09         7.46         6.81         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        24.59        22.49        13.12 
TCGA-43-3920 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.74        12.36        12.46        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         1.58        66.51         6.64         6.35         2.93 
TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        9.96        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.42        30.31        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        1.02         0.99         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.20         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY 
        2.07         0.56         0.53         1.12         0.99         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.02         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46N 
        8.94        44.09        16.47         0.66        34.36        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       21.07         3.58        12.23        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       21.70        80.42        49.48        66.51        41.39        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       29.85        35.90        26.79        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 
        7.07        23.01        19.00         3.02         2.01        12.03 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98         5.03        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 
        0.49        70.09       106.95         0.16        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8153 
       86.76        53.95        82.92       104.09        27.39        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6798 TCGA-85-7696 
       35.90         0.33        30.81        23.44         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         0.03         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
        0.36         1.45         1.78         1.81         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 
        0.66         0.72         0.66         0.89         0.10         0.46 
TCGA-85-A4CL TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.46         0.79        24.89         1.55         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        8.02        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        2.27         2.86         0.16        39.88         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        8.42         2.73        13.58        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
       14.76         1.18         3.02        56.61        50.86 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.13               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            173.79             141.34 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             9.925             12.230 
[1] "0.1 - 173.8 (9.9)"  "0.0 - 141.3 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
[1] "hr=" "1.2"
D19V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10P GAIN MUTATED         0        9       12        1         9        11
  10P GAIN WILD-TYPE       1       58      119        0        36        54
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10P GAIN MUTATED           10          3        1
  10P GAIN WILD-TYPE         43         17        4
D19V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED    10  38   7   2
  10P GAIN WILD-TYPE  82 201  35  16
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1               10                 82
  T2               38                201
  T3                7                 35
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  10P GAIN MUTATED    32  19   4   1
  10P GAIN WILD-TYPE 213  84  29   4
D19V5, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0               32                213
  N1               19                 84
  N2                4                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  10P GAIN MUTATED    50   1   5
  10P GAIN WILD-TYPE 283   4  42
D19V6, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  M0               50                283
  M1                1                  4
  MX                5                 42
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED    10  47
  10P GAIN WILD-TYPE  88 246
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     10   47
  10P GAIN WILD-TYPE   88  246
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               10                 88
  MALE                 47                246
D19V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                       1
  10P GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P GAIN MUTATED                                        0
  10P GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P GAIN MUTATED                                         0
  10P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P GAIN MUTATED                                                            56
  10P GAIN WILD-TYPE                                                         317
D19V9, multiclass
                                                             clus
vv                                                            10P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               56
                                                             clus
vv                                                            10P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                317
D19V10, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     1  56
  10P GAIN WILD-TYPE  11 323
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      1   56
  10P GAIN WILD-TYPE   11  323
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 1                 11
  YES               56                323
D19V11, continuous
D19V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P GAIN MUTATED    48   0   1   1
  10P GAIN WILD-TYPE 269   7   3  17
D19V13, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  R0               48                269
  R1                0                  7
  R2                1                  3
  RX                1                 17

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    21   8
  10Q GAIN WILD-TYPE 214 114
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                29                328 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 8                114 
$`10Q GAIN MUTATED`
TCGA-18-3416 TCGA-21-1070 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-22-5473 
       28.34       119.54         8.78        21.73        10.82        63.52 
TCGA-33-4566 TCGA-34-2609 TCGA-34-5241 TCGA-34-5928 TCGA-37-4141 TCGA-43-5670 
      173.79        31.23        14.07         5.52         0.39        18.05 
TCGA-52-7811 TCGA-56-7222 TCGA-56-A49D TCGA-60-2724 TCGA-60-2726 TCGA-77-7140 
        8.75         0.43         0.99        23.57        11.77        20.78 
TCGA-77-7142 TCGA-77-8130 TCGA-85-6561 TCGA-85-7843 TCGA-85-8350 TCGA-85-8352 
       42.25        82.92         0.79         1.15         1.97         2.20 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L TCGA-90-7767 TCGA-94-7943 
        0.82         0.62         0.43         2.93         4.70 

$`10Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80        31.63        88.08        29.85 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
        7.63       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5232 
       61.61        31.50        28.96        32.84        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5929 
       32.68         9.04        10.82         7.73        22.95         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        24.59        22.49        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        11.74        11.47        12.36        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.35         2.93         9.96        10.65        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
        0.39        29.95        17.79         5.42        30.31        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 
       28.93         0.10         2.04         1.02         0.99         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43         8.94        44.09        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
        0.66        34.36        36.59        17.72        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       29.85        35.90        26.79        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
        1.94        25.97        40.01        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
        5.03        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7141 
       73.08        75.09        23.28        11.18        89.95         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.09       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 
       86.76        53.95       104.09        27.39         9.63        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 
       35.90         0.33        30.81        23.44         0.36         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         1.61         0.03         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 
        0.43         0.36         1.45         1.78         1.81         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66         0.89         0.13 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.10         0.46         0.46         0.79        24.89         1.55 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        0.59         3.29         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 
        4.01         5.26         2.27         2.86         0.16        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.15         6.18         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.33        10.13         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.39               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            173.79             141.34 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
             8.780             11.885 
[1] "0.4 - 173.8 (8.8)"  "0.0 - 141.3 (11.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
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        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
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        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
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        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
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        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
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        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
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        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
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        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
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        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
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        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D20V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10Q GAIN MUTATED         0        5        7        0         7         7
  10Q GAIN WILD-TYPE       1       62      124        1        38        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10Q GAIN MUTATED            6          0        0
  10Q GAIN WILD-TYPE         47         20        5
D20V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED     5  23   5   0
  10Q GAIN WILD-TYPE  87 216  37  18
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1                5                 87
  T2               23                216
  T3                5                 37
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  10Q GAIN MUTATED    18  12   2   0
  10Q GAIN WILD-TYPE 227  91  31   5
D20V5, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0               18                227
  N1               12                 91
  N2                2                 31
  N3                0                  5
                    vv
clus                  M0  M1  MX
  10Q GAIN MUTATED    28   0   4
  10Q GAIN WILD-TYPE 305   5  43
D20V6, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  M0               28                305
  M1                0                  5
  MX                4                 43
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     6  27
  10Q GAIN WILD-TYPE  92 266
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      6   27
  10Q GAIN WILD-TYPE   92  266
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE                6                 92
  MALE                 27                266
D20V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                       0
  10Q GAIN WILD-TYPE                                    12
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q GAIN MUTATED                                        0
  10Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q GAIN MUTATED                                         0
  10Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q GAIN MUTATED                                                            33
  10Q GAIN WILD-TYPE                                                         340
D20V9, multiclass
                                                             clus
vv                                                            10Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               33
                                                             clus
vv                                                            10Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                340
D20V10, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     1  32
  10Q GAIN WILD-TYPE  11 347
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      1   32
  10Q GAIN WILD-TYPE   11  347
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 1                 11
  YES               32                347
D20V11, continuous
D20V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q GAIN MUTATED    29   0   0   0
  10Q GAIN WILD-TYPE 288   7   4  18
D20V13, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  R0               29                288
  R1                0                  7
  R2                0                  4
  RX                0                 18

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    32  20
  11P GAIN WILD-TYPE 203 102
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                52                305 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                20                102 
$`11P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-5783 
        4.47         4.80       119.54        99.16        31.69        88.08 
TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-5491 TCGA-33-4583 TCGA-34-5239 
       20.45        48.33        24.13        56.32       141.34        10.82 
TCGA-39-5027 TCGA-39-5034 TCGA-39-5036 TCGA-43-2578 TCGA-43-5668 TCGA-43-6771 
       60.76        36.39        35.64        22.49        11.47         5.42 
TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-56-6545 TCGA-56-7582 TCGA-56-7730 
       13.87         5.42        30.31         2.04         0.85         0.20 
TCGA-56-A49D TCGA-56-A4BX TCGA-60-2719 TCGA-60-2722 TCGA-66-2734 TCGA-66-2744 
        0.99         1.51        42.61        29.85        43.10         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2770 TCGA-66-2777 TCGA-66-2785 
        2.01         1.02         2.01        23.01         2.01         1.94 
TCGA-66-2791 TCGA-68-7755 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 
        5.03         2.73        29.56        23.28        11.18        42.25 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8139 TCGA-77-A5GB TCGA-85-6560 TCGA-85-8276 
       46.78         6.51       104.09        30.81         0.36         0.43 
TCGA-90-7767 TCGA-92-8064 TCGA-94-7943 TCGA-96-8169 
        2.93         5.26         4.70         6.18 

$`11P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1075 
        2.79        90.51         3.02        27.16        46.88        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
        8.78        31.63        29.85        21.73        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 TCGA-22-4599 
       14.10        27.02        48.82        35.08         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       31.73        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        16.60         7.63       114.05        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      173.79       103.53        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       31.23        50.24        51.78        32.68         9.04         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       68.58        55.17        70.03         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       27.35        15.58        35.70        17.88        17.06        24.59 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       13.12        27.02        11.74        18.05        12.36        12.46 
TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        6.35         2.93         9.96        10.65         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       29.95        17.79         8.75        27.45        28.93         0.10 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.56         0.53         1.12         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       16.47         0.66        34.36        36.59        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       56.91        50.33        35.34        48.49         3.16        32.28 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2737 
       35.90        23.57        26.79        11.77        16.96         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       21.07         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
       20.98        25.02         0.99         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       25.97        40.01        22.98         4.04        22.98        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 
       10.06        54.08         4.01        49.05         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 
        8.02         3.12        73.08        75.09        89.95        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 
        0.49        70.09       106.95         0.16        15.75        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       53.95        82.92        27.39         9.63        55.33        35.90 
TCGA-77-8156 TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
        0.33        23.44         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.61         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 
        1.97         0.53         1.41         0.46         1.18         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        1.45         1.78         1.97         1.81         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66         0.89         0.13 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10         0.46         0.46         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
        0.43        24.89         1.55         0.59         3.29         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
       10.88         2.70         3.48         4.01         2.27         2.86 
TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
        0.16        39.88        44.15         6.90         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.33        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.20               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            141.34             173.79 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            11.325             11.770 
[1] "0.2 - 141.3 (11.3)" "0.0 - 173.8 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "11P GAIN MUTATED"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D21V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P GAIN MUTATED         0        6       20        0         6        10
  11P GAIN WILD-TYPE       1       61      111        1        39        55
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11P GAIN MUTATED            9          3        0
  11P GAIN WILD-TYPE         44         17        5
D21V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED    10  32  11   1
  11P GAIN WILD-TYPE  82 207  31  17
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1               10                 82
  T2               32                207
  T3               11                 31
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  11P GAIN MUTATED    35  10   5   2
  11P GAIN WILD-TYPE 210  93  28   3
D21V5, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0               35                210
  N1               10                 93
  N2                5                 28
  N3                2                  3
                    vv
clus                  M0  M1  MX
  11P GAIN MUTATED    47   0   6
  11P GAIN WILD-TYPE 286   5  41
D21V6, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  M0               47                286
  M1                0                  5
  MX                6                 41
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    11  43
  11P GAIN WILD-TYPE  87 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     11   43
  11P GAIN WILD-TYPE   87  250
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               11                 87
  MALE                 43                250
D21V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                       1
  11P GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P GAIN MUTATED                                        1
  11P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P GAIN MUTATED                                         0
  11P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P GAIN MUTATED                                                            52
  11P GAIN WILD-TYPE                                                         321
D21V9, multiclass
                                                             clus
vv                                                            11P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               52
                                                             clus
vv                                                            11P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                321
D21V10, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     2  52
  11P GAIN WILD-TYPE  10 327
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      2   52
  11P GAIN WILD-TYPE   10  327
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 2                 10
  YES               52                327
D21V11, continuous
D21V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P GAIN MUTATED    43   1   1   3
  11P GAIN WILD-TYPE 274   6   3  15
D21V13, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  R0               43                274
  R1                1                  6
  R2                1                  3
  RX                3                 15

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    42  20
  11Q GAIN WILD-TYPE 193 102
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                62                295 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                20                102 
$`11Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1070 TCGA-21-1072 TCGA-21-1077 TCGA-21-1079 TCGA-22-4591 
        4.80       119.54        99.16        34.78        31.69        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-5491 TCGA-33-4583 TCGA-34-5231 TCGA-34-5239 
       48.33        24.13        56.32       141.34        50.24        10.82 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5034 
        7.46         6.81         0.39         3.39        47.80        36.39 
TCGA-39-5036 TCGA-43-2578 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6771 
       35.64        22.49        11.47        18.05        12.36         5.42 
TCGA-52-7810 TCGA-56-6545 TCGA-56-7582 TCGA-56-7730 TCGA-56-A49D TCGA-60-2719 
       30.31         2.04         0.85         0.20         0.99        42.61 
TCGA-60-2720 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2759 TCGA-66-2763 
        3.16        43.10         2.01        21.07        25.02         0.99 
TCGA-66-2777 TCGA-66-2781 TCGA-66-2786 TCGA-66-2789 TCGA-66-2791 TCGA-68-7755 
        2.01         3.98        25.97         4.04         5.03         2.73 
TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 
       29.56        23.28        11.18         0.49        42.25       106.95 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8139 TCGA-77-8154 TCGA-77-A5GB TCGA-85-6560 
       46.78         6.51       104.09        35.90        30.81         0.36 
TCGA-85-7843 TCGA-85-7950 TCGA-85-8276 TCGA-85-8353 TCGA-85-A53L TCGA-90-7767 
        1.15         1.97         0.43         1.78         0.43         2.93 
TCGA-92-8064 TCGA-94-7943 
        5.26         4.70 

$`11Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       70.13        60.89        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        29.85        21.73        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 
        1.74        14.10        27.02        48.82        35.08         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.73        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        16.60         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       173.79       103.53        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       32.84        31.23        51.78        32.68         9.04         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4133 TCGA-39-5016 
        0.43         0.39         6.54         8.09         7.82        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
       24.33         1.94        27.35        15.58        35.70        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-6647 
       17.06        24.59        13.12        27.02        11.74        12.46 
TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.35         2.93         9.96        10.65        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95        17.79         5.42         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       28.93         0.10         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.45         1.32         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        1.18         2.07         0.56         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K 
       12.43         8.94        44.09        16.47         0.66        34.36 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.51        41.39         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       48.49        32.28        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       11.77        16.96         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 
        0.99         0.99        20.98         2.01         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        2.01         7.07        23.01        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
       12.03        12.00        24.95         1.94        40.01        22.98 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 
        6.64         6.94         8.02         3.12        73.08        75.09 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 
       89.95        20.78        70.09         0.16        15.75        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8156 
       53.95        82.92        27.39         9.63        55.33         0.33 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
       23.44         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        0.03         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        0.46         1.18         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.81         2.20         2.01         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.89         0.13         0.10         0.46         0.46         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.62         0.79        24.89         1.55         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
        8.02        10.88         2.70         3.48         4.01         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.20               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            141.34             173.79 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            11.325             11.770 
[1] "0.2 - 141.3 (11.3)" "0.0 - 173.8 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D22V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q GAIN MUTATED         0       11       19        0         8        11
  11Q GAIN WILD-TYPE       1       56      112        1        37        54
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11Q GAIN MUTATED           11          4        2
  11Q GAIN WILD-TYPE         42         16        3
D22V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED    16  37  12   1
  11Q GAIN WILD-TYPE  76 202  30  17
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1               16                 76
  T2               37                202
  T3               12                 30
  T4                1                 17
                    vv
clus                  N0  N1  N2  N3
  11Q GAIN MUTATED    42  14   6   2
  11Q GAIN WILD-TYPE 203  89  27   3
D22V5, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0               42                203
  N1               14                 89
  N2                6                 27
  N3                2                  3
                    vv
clus                  M0  M1  MX
  11Q GAIN MUTATED    57   2   6
  11Q GAIN WILD-TYPE 276   3  41
D22V6, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  M0               57                276
  M1                2                  3
  MX                6                 41
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    17  49
  11Q GAIN WILD-TYPE  81 244
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     17   49
  11Q GAIN WILD-TYPE   81  244
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               17                 81
  MALE                 49                244
D22V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                       1
  11Q GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q GAIN MUTATED                                        1
  11Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q GAIN MUTATED                                         0
  11Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q GAIN MUTATED                                                            64
  11Q GAIN WILD-TYPE                                                         309
D22V9, multiclass
                                                             clus
vv                                                            11Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               64
                                                             clus
vv                                                            11Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                309
D22V10, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     1  65
  11Q GAIN WILD-TYPE  11 314
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      1   65
  11Q GAIN WILD-TYPE   11  314
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 1                 11
  YES               65                314
D22V11, continuous
D22V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q GAIN MUTATED    53   1   0   5
  11Q GAIN WILD-TYPE 264   6   4  13
D22V13, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  R0               53                264
  R1                1                  6
  R2                0                  4
  RX                5                 13

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED   106  57
  12P GAIN WILD-TYPE 129  65
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               163                194 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                57                 65 
$`12P GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 
        4.80        11.34        24.92        43.76         6.15        90.51 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1077 TCGA-21-1079 TCGA-21-1081 TCGA-21-1083 
      119.54        99.16        34.78        31.69         9.30         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1012 TCGA-22-1017 
       31.63        21.73        10.82        32.19        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 
       20.45        35.08        48.33        24.13        38.17        34.75 
TCGA-22-4604 TCGA-22-5471 TCGA-22-5473 TCGA-22-5477 TCGA-22-5480 TCGA-22-5482 
       13.12        31.73        63.52        44.22        71.34        11.74 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 
       62.86        56.32         7.63        97.94       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2605 
      141.34        14.07        19.76        26.99         2.63        28.96 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 
       31.23        50.24        10.82         7.73        14.07         5.52 
TCGA-34-7107 TCGA-37-3792 TCGA-39-5019 TCGA-39-5021 TCGA-39-5034 TCGA-39-5035 
        1.08         0.39        44.71        68.58        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 
       35.64        35.70        17.06        27.02        11.74        18.05 
TCGA-43-6770 TCGA-43-6771 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
       10.19         5.42         6.64         6.35         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
       13.87         0.39        29.95         5.42        30.31         8.75 
TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 
       27.45         2.04         1.02         0.43         0.99         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8629 TCGA-56-A4BX TCGA-58-8387 
        0.20         0.03         5.82         1.12         1.51        13.25 
TCGA-58-A46K TCGA-60-2695 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       34.36        21.07        10.22        96.82        37.94        92.71 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 TCGA-60-2723 TCGA-60-2724 
       80.42        41.39         9.01        42.61        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       26.79        11.77        16.96         0.99         2.01         0.99 
TCGA-66-2758 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2777 TCGA-66-2781 
       20.98         1.02         2.01         7.07         2.01         3.98 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
        1.94        40.01        10.06        54.08        49.05         2.73 
TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-7140 TCGA-77-7141 
        6.64         8.02         3.12        29.56        20.78         0.49 
TCGA-77-7142 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 TCGA-77-8130 
       42.25       106.95        46.78        15.75        53.95        82.92 
TCGA-77-8148 TCGA-77-8156 TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
        9.63         0.33         0.36         0.59         0.33         0.03 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 
        1.97         0.85         1.97         0.53         1.41         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-8354 TCGA-85-8481 
        0.36         1.45         1.97         2.20         2.01         0.66 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-7767 
        0.10         0.46         0.82         0.79         0.43         2.93 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 
        0.59        10.88         2.70         3.48         5.26         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-98-8021 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 
        4.70        44.15        13.58         7.30        14.76         1.18 
TCGA-MF-A522 
        3.02 

$`12P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         1.61         2.79         3.02        27.16 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1080 TCGA-21-1082 
       46.88        70.13        60.89        15.55       122.43       119.80 
TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       88.08        29.85        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-4596 TCGA-22-4605 TCGA-22-4607 
       64.21         1.74        27.02         0.56        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
        9.53        11.77        64.90        14.60         0.79        54.28 
TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 
       79.20        18.84        30.08        16.60       114.05        43.10 
TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 
       54.44        10.98        61.61        31.50        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5927 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       32.68         9.04        22.95         4.96         3.95         0.43 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        6.54         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        3.39        47.80        74.07        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5039 TCGA-43-2576 
        1.71        24.33         1.94        27.35        17.88        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6773 
       22.49        13.12        11.47        12.36        12.46         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-51-4080 TCGA-52-7622 
        6.97         1.58        66.51         2.93         0.39        17.79 
TCGA-56-1622 TCGA-56-5897 TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-8503 
       28.93         0.10         0.99         1.45         1.32         1.35 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D 
        1.78         1.18         2.07         0.56         0.53         0.99 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 
        0.99         1.02         0.13         0.26         0.03        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N 
        8.94        44.09        16.47         0.66        36.59        17.72 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 
        3.58        12.23        21.70        49.48        66.51        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       50.33        35.34        48.49         3.16        32.28        29.85 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 
       43.10         2.01        21.07         1.02         0.92         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
       25.02         0.99         2.01         2.01        23.01        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
        3.02        19.00        12.03        12.00        24.95        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
       22.98         4.04        22.98         5.03        30.02         4.01 
TCGA-68-7757 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
        6.94        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7335 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 TCGA-77-8139 TCGA-77-8144 
       70.09         0.16         6.51        86.76       104.09        27.39 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 
       55.33        35.90        30.81        23.44         0.79         1.12 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 
        1.61         1.15         1.25         0.46         1.18         1.78 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 
        1.81         1.78         0.66         0.72         0.89         0.13 
TCGA-85-A4CL TCGA-85-A50M TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED 
        0.46         0.62        24.89         1.55         3.29         8.02 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        4.01         2.27         2.86        39.88         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-NC-A5HE 
        8.42         2.73         7.33        10.13         1.15        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.03               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            173.79             122.43 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
            10.880             12.095 
[1] "0.0 - 173.8 (10.9)" "0.0 - 122.4 (12.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D23V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P GAIN MUTATED         1       26       55        1        24        32
  12P GAIN WILD-TYPE       0       41       76        0        21        33
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12P GAIN MUTATED           29          8        1
  12P GAIN WILD-TYPE         24         12        4
D23V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P GAIN MUTATED    35 111  21  11
  12P GAIN WILD-TYPE  57 128  21   7
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               35                 57
  T2              111                128
  T3               21                 21
  T4               11                  7
                    vv
clus                  N0  N1  N2  N3
  12P GAIN MUTATED   108  51  16   1
  12P GAIN WILD-TYPE 137  52  17   4
D23V5, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0              108                137
  N1               51                 52
  N2               16                 17
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12P GAIN MUTATED   151   1  23
  12P GAIN WILD-TYPE 182   4  24
D23V6, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  M0              151                182
  M1                1                  4
  MX               23                 24
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    31 147
  12P GAIN WILD-TYPE  67 146
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     31  147
  12P GAIN WILD-TYPE   67  146
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               31                 67
  MALE                147                146
D23V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                       4
  12P GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P GAIN MUTATED                                        2
  12P GAIN WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P GAIN MUTATED                                         0
  12P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P GAIN MUTATED                                                           172
  12P GAIN WILD-TYPE                                                         201
D23V9, multiclass
                                                             clus
vv                                                            12P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              172
                                                             clus
vv                                                            12P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                201
D23V10, binary
                    cls
clus                   0   1
  12P GAIN MUTATED     7 171
  12P GAIN WILD-TYPE   5 208
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      7  171
  12P GAIN WILD-TYPE    5  208
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 7                  5
  YES              171                208
D23V11, continuous
D23V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P GAIN MUTATED   141   3   2   8
  12P GAIN WILD-TYPE 176   4   2  10
D23V13, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  R0              141                176
  R1                3                  4
  R2                2                  2
  RX                8                 10

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    71  40
  12Q GAIN WILD-TYPE 164  82
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               111                246 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                40                 82 
$`12Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3412 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-18-4721 
        4.80        11.34        24.92        43.76         6.15        90.51 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1077 TCGA-21-1083 TCGA-21-5787 TCGA-22-1016 
      119.54        99.16        34.78         8.78        10.82        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4601 TCGA-22-4604 
       48.82        20.45        35.08        48.33        34.75        13.12 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5480 TCGA-22-5482 TCGA-22-5491 TCGA-33-4532 
       31.73        63.52        71.34        11.74        56.32         7.63 
TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 
       97.94       141.34        14.07        19.76         2.63        28.96 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 TCGA-34-7107 TCGA-37-3792 TCGA-37-4130 
       31.23        50.24        10.82         1.08         0.39         8.09 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5019 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        3.39        47.80        44.71        36.39        15.58        35.64 
TCGA-39-5037 TCGA-43-3394 TCGA-43-3920 TCGA-43-6771 TCGA-43-8116 TCGA-46-3768 
       35.70        27.02        11.74         5.42         6.35         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-52-7809 TCGA-52-7812 TCGA-56-6546 TCGA-56-7582 
       10.65         0.39         5.42        27.45         1.02         0.85 
TCGA-56-7822 TCGA-56-A4BX TCGA-58-A46K TCGA-60-2695 TCGA-60-2698 TCGA-60-2704 
        0.03         1.51        34.36        21.07        10.22        37.94 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2724 
       92.71        80.42         9.01        35.34        42.61        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2754 TCGA-66-2756 TCGA-66-2766 TCGA-66-2767 
       26.79        11.77         2.01         0.99         1.02         2.01 
TCGA-66-2781 TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
        3.98        40.01        10.06        54.08        49.05         2.73 
TCGA-68-7756 TCGA-68-8251 TCGA-77-6842 TCGA-77-7140 TCGA-77-7142 TCGA-77-7465 
        6.64         3.12        29.56        20.78        42.25        15.75 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8148 TCGA-77-8154 TCGA-85-7950 TCGA-85-8049 
       53.95        82.92         9.63        35.90         1.97         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8350 TCGA-85-8353 TCGA-85-8354 
        0.53         1.41         0.43         1.97         1.78         2.01 
TCGA-85-8664 TCGA-85-A4QR TCGA-85-A513 TCGA-90-7767 TCGA-90-7769 TCGA-92-7340 
        0.10         0.82         0.79         2.93         0.59         2.70 
TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-98-8021 TCGA-98-8023 
        3.48         0.16         4.70        44.15        13.58        10.13 
TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 
        7.30        14.76         1.18 

$`12Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07        79.46        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 
       59.51        28.34         1.61         2.79         3.02        27.16 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       46.88        70.13        60.89        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.30       119.80        31.63        88.08        29.85        21.73 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4605 
        1.74        14.10        24.13         0.56        38.17        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 
       19.30         9.53        11.77        64.90        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
        0.79        54.28        79.20        18.84        30.08        62.86 
TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4587 
       16.60       114.05        43.10       173.79       103.53        54.44 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 
       10.98        26.99        61.61        31.50        32.84        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 
        4.96         3.95         0.43         6.54         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        74.07        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5039 
       60.76         1.71        24.33         1.94        27.35        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 TCGA-43-5670 
       17.06        24.59        22.49        13.12        11.47        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.36        12.46        10.19         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8118 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
       66.51         6.64         2.93        13.87         0.39        29.95 
TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       17.79        30.31         8.75        28.93         0.10         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 
        0.99         0.43         0.99         1.45         1.32         0.20 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         1.12         0.99         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       16.47         0.66        36.59        17.72         3.58        12.23 
TCGA-60-2703 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 
       96.82        21.70        49.48        66.51        41.39        56.91 
TCGA-60-2714 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       50.33        48.49         3.16        32.28        29.85        35.90 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
       22.98         4.04        22.98         5.03        30.02         4.01 
TCGA-68-7757 TCGA-68-8250 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.94         8.02        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
       89.95         0.49        70.09       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8139 TCGA-77-8144 TCGA-77-8153 TCGA-77-8156 
        6.51        86.76       104.09        27.39        55.33         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.33         1.61         0.03         1.15         1.25         0.85 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
        0.46         1.18         0.36         1.45         1.78         1.81 
TCGA-85-8352 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.20         0.66         0.72         0.66         0.89         0.13 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.46         0.46         0.62         0.43        24.89         1.55 
TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         8.02        10.88         4.01         5.26         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
        2.86        39.88         6.18         6.90         8.42         2.73 
TCGA-98-8022 TCGA-L3-A4E7 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        7.33         1.15         3.02        56.61        50.86        37.32 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.03               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
            141.34             173.79 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             11.74              11.62 
[1] "0.0 - 141.3 (11.7)" "0.0 - 173.8 (11.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q GAIN MUTATED         0       21       32        1        15        21
  12Q GAIN WILD-TYPE       1       46       99        0        30        44
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12Q GAIN MUTATED           22          7        1
  12Q GAIN WILD-TYPE         31         13        4
D24V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN MUTATED    28  69  14   9
  12Q GAIN WILD-TYPE  64 170  28   9
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1               28                 64
  T2               69                170
  T3               14                 28
  T4                9                  9
                    vv
clus                  N0  N1  N2  N3
  12Q GAIN MUTATED    67  36  14   1
  12Q GAIN WILD-TYPE 178  67  19   4
D24V5, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0               67                178
  N1               36                 67
  N2               14                 19
  N3                1                  4
                    vv
clus                  M0  M1  MX
  12Q GAIN MUTATED   105   1  13
  12Q GAIN WILD-TYPE 228   4  34
D24V6, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  M0              105                228
  M1                1                  4
  MX               13                 34
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    20 100
  12Q GAIN WILD-TYPE  78 193
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     20  100
  12Q GAIN WILD-TYPE   78  193
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               20                 78
  MALE                100                193
D24V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                       3
  12Q GAIN WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q GAIN MUTATED                                        1
  12Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q GAIN MUTATED                                         0
  12Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q GAIN MUTATED                                                           116
  12Q GAIN WILD-TYPE                                                         257
D24V9, multiclass
                                                             clus
vv                                                            12Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              116
                                                             clus
vv                                                            12Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                257
D24V10, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED     4 116
  12Q GAIN WILD-TYPE   8 263
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      4  116
  12Q GAIN WILD-TYPE    8  263
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 4                  8
  YES              116                263
D24V11, continuous
D24V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q GAIN MUTATED    98   2   1   6
  12Q GAIN WILD-TYPE 219   5   3  12
D24V13, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  R0               98                219
  R1                2                  5
  R2                1                  3
  RX                6                 12

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    19   8
  13Q GAIN WILD-TYPE 216 114
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                27                330 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                 8                114 
$`13Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3412 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5786 
        4.47        11.34        31.69         9.30       119.80        21.73 
TCGA-22-4599 TCGA-33-4533 TCGA-37-4130 TCGA-39-5024 TCGA-39-5034 TCGA-39-5035 
       38.17       114.05         8.09        70.03        36.39        15.58 
TCGA-43-2576 TCGA-43-7657 TCGA-51-4081 TCGA-52-7810 TCGA-56-5897 TCGA-56-7223 
       24.59         1.58        29.95        30.31         0.10         0.99 
TCGA-56-A4BX TCGA-60-2698 TCGA-66-2737 TCGA-66-2791 TCGA-85-7696 TCGA-85-7843 
        1.51        10.22         2.01         5.03         0.59         1.15 
TCGA-85-A50M TCGA-94-7943 TCGA-MF-A522 
        0.62         4.70         3.02 

$`13Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16        81.07        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       59.51        28.34        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       99.16        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI 
        8.78        31.63        88.08        29.85        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       14.10        27.02        48.82        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 
       47.80        74.07        44.71        68.58        55.17        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 
        1.71        24.33         1.94        27.35        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       17.88        17.06        22.49        13.12        27.02        11.74 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        12.46        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        3.78         6.97        66.51         6.64         6.35         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 
        9.96        10.65        13.87         0.39         0.39        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 
        5.42         8.75        27.45        28.93         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.99         0.43         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         0.99         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43         8.94 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N 
       44.09        16.47         0.66        34.36        36.59        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       21.07         3.58        12.23        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        0.92         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
        2.01         1.02         2.01         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
       46.78        15.75         6.51        86.76        53.95        82.92 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
      104.09        27.39         9.63        55.33        35.90         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 
       30.81        23.44         0.36         0.79         1.12         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        1.45         1.78         1.97         1.81         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66         0.89         0.13 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L 
        0.10         0.46         0.46         0.82         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
       24.89         1.55         2.93         0.59         3.29         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
       10.88         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76         1.18        56.61        50.86        37.32 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.10               0.03 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            119.80             173.79 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
             9.300             11.885 
[1] "0.1 - 119.8 (9.3)"  "0.0 - 173.8 (11.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
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  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D25V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q GAIN MUTATED         0        5        9        0         4         6
  13Q GAIN WILD-TYPE       1       62      122        1        41        59
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  13Q GAIN MUTATED            4          1        0
  13Q GAIN WILD-TYPE         49         19        5
D25V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED     7  17   5   0
  13Q GAIN WILD-TYPE  85 222  37  18
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1                7                 85
  T2               17                222
  T3                5                 37
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  13Q GAIN MUTATED    19   6   2   1
  13Q GAIN WILD-TYPE 226  97  31   4
D25V5, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0               19                226
  N1                6                 97
  N2                2                 31
  N3                1                  4
                    vv
clus                  M0  M1  MX
  13Q GAIN MUTATED    23   0   6
  13Q GAIN WILD-TYPE 310   5  41
D25V6, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  M0               23                310
  M1                0                  5
  MX                6                 41
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     8  21
  13Q GAIN WILD-TYPE  90 272
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      8   21
  13Q GAIN WILD-TYPE   90  272
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE                8                 90
  MALE                 21                272
D25V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                       0
  13Q GAIN WILD-TYPE                                    12
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q GAIN MUTATED                                        1
  13Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q GAIN MUTATED                                         0
  13Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q GAIN MUTATED                                                            28
  13Q GAIN WILD-TYPE                                                         345
D25V9, multiclass
                                                             clus
vv                                                            13Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               28
                                                             clus
vv                                                            13Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                345
D25V10, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     1  28
  13Q GAIN WILD-TYPE  11 351
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      1   28
  13Q GAIN WILD-TYPE   11  351
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 1                 11
  YES               28                351
D25V11, continuous
D25V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q GAIN MUTATED    22   1   0   2
  13Q GAIN WILD-TYPE 295   6   4  16
D25V13, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  R0               22                295
  R1                1                  6
  R2                0                  4
  RX                2                 16

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    59  25
  14Q GAIN WILD-TYPE 176  97
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                84                273 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                25                 97 
$`14Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3421 TCGA-18-5592 
       81.07        46.52        11.34        59.51        43.76         3.02 
TCGA-21-1076 TCGA-21-1079 TCGA-21-1082 TCGA-21-5786 TCGA-21-5787 TCGA-22-4591 
       60.89        31.69       119.80        21.73        10.82        20.45 
TCGA-22-4593 TCGA-22-4595 TCGA-22-5471 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 
       35.08        24.13        31.73         7.63       114.05       173.79 
TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 TCGA-37-3792 TCGA-37-5819 TCGA-39-5011 
      103.53        10.98        19.76         0.39         3.39        47.80 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-43-2578 TCGA-43-6143 TCGA-43-6771 
       24.33        27.35        35.70        22.49        12.36         5.42 
TCGA-43-8118 TCGA-46-6025 TCGA-51-4081 TCGA-52-7622 TCGA-52-7811 TCGA-56-1622 
        2.93        10.65        29.95        17.79         8.75        28.93 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7730 TCGA-56-8504 TCGA-56-8624 TCGA-56-8629 
        2.04         1.02         0.20         5.82         1.18         1.12 
TCGA-56-A49D TCGA-58-8393 TCGA-58-A46N TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 
        0.99         0.66        17.72        10.22        92.71        21.70 
TCGA-60-2708 TCGA-60-2719 TCGA-60-2722 TCGA-60-2724 TCGA-66-2744 TCGA-66-2756 
       80.42        42.61        29.85        23.57         0.99         0.99 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2771 TCGA-66-2782 TCGA-66-2788 TCGA-66-2792 
        0.99         2.01        19.00        12.00        22.98        30.02 
TCGA-66-2793 TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 
       10.06        49.05         2.73        23.28        11.18        42.25 
TCGA-77-7337 TCGA-77-7463 TCGA-77-8007 TCGA-77-8130 TCGA-77-8139 TCGA-77-8153 
      106.95        46.78         6.51        82.92       104.09        55.33 
TCGA-85-6561 TCGA-85-7698 TCGA-85-8276 TCGA-85-8353 TCGA-85-8355 TCGA-85-A50M 
        0.79         1.61         0.43         1.78         0.66         0.62 
TCGA-92-7340 TCGA-92-7341 TCGA-98-8020 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HI 
        2.70         3.48         2.73         1.15        14.76        37.32 

$`14Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3416 
       12.16         4.47        79.46         4.80        13.02        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 
       24.92         1.61         6.15         2.79        90.51        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        99.16        70.13        34.78        15.55 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30         8.78        31.63        88.08        29.85 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 TCGA-22-4596 
        1.74        14.10        27.02        48.82        48.33         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        64.90        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 
       62.86        56.32        16.60        97.94        43.10       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       14.07        54.44        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
        4.96         1.08         3.95         0.43         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
        7.46         7.82         6.81         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       68.58        55.17        70.03        60.76         1.71         1.94 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.64        17.88        17.06        24.59 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       13.12        27.02        11.74        11.47        18.05        12.46 
TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       10.19         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7809 
        6.35         9.96        13.87         0.39         0.39         5.42 
TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       30.31        27.45         0.10         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        1.45         1.32         0.85         0.03         1.35         1.78 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        2.07         0.56         0.53         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43         8.94 
TCGA-58-8391 TCGA-58-8392 TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 
       44.09        16.47        34.36        36.59        21.07         3.58 
TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       12.23        96.82        37.94        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
        9.01        56.91        50.33        35.34        48.49         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       32.28        35.90        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
        2.01        21.07         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
       20.98        25.02         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        25.97        40.01         4.04        22.98 
TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        5.03        54.08         4.01         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 
        3.12        29.56        73.08        75.09        89.95        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
        0.49        70.09         0.16        15.75        86.76        53.95 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH 
       27.39         9.63        35.90         0.33        30.81        23.44 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 
        0.36         1.12         0.59         0.33         0.03         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        0.46         1.18         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.81         2.20         2.01         0.72         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 
        0.13         0.10         0.46         0.46         0.82         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.89         1.55         2.93         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        8.02        10.88         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-LA-A446 
        8.42        13.58         7.33        10.13         7.30         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        3.02        56.61        50.86 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.20               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            173.79             141.34 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
            17.755             10.820 
[1] "0.2 - 173.8 (17.8)" "0.0 - 141.3 (10.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
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        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
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        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
[1] "hr=" "1.6"
D26V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q GAIN MUTATED         0       11       33        0        11        20
  14Q GAIN WILD-TYPE       1       56       98        1        34        45
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  14Q GAIN MUTATED           15          3        0
  14Q GAIN WILD-TYPE         38         17        5
D26V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q GAIN MUTATED    17  58  15   3
  14Q GAIN WILD-TYPE  75 181  27  15
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               17                 75
  T2               58                181
  T3               15                 27
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  14Q GAIN MUTATED    61  22  10   0
  14Q GAIN WILD-TYPE 184  81  23   5
D26V5, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0               61                184
  N1               22                 81
  N2               10                 23
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q GAIN MUTATED    84   0   8
  14Q GAIN WILD-TYPE 249   5  39
D26V6, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  M0               84                249
  M1                0                  5
  MX                8                 39
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    25  68
  14Q GAIN WILD-TYPE  73 225
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     25   68
  14Q GAIN WILD-TYPE   73  225
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               25                 73
  MALE                 68                225
D26V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                       2
  14Q GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q GAIN MUTATED                                        1
  14Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q GAIN MUTATED                                         0
  14Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q GAIN MUTATED                                                            90
  14Q GAIN WILD-TYPE                                                         283
D26V9, multiclass
                                                             clus
vv                                                            14Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               90
                                                             clus
vv                                                            14Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                283
D26V10, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED     3  90
  14Q GAIN WILD-TYPE   9 289
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      3   90
  14Q GAIN WILD-TYPE    9  289
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 3                  9
  YES               90                289
D26V11, continuous
D26V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q GAIN MUTATED    78   1   1   6
  14Q GAIN WILD-TYPE 239   6   3  12
D26V13, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  R0               78                239
  R1                1                  6
  R2                1                  3
  RX                6                 12

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    53  26
  15Q GAIN WILD-TYPE 182  96
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                79                278 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                26                 96 
$`15Q GAIN MUTATED`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-21-1077 
        4.80        13.02        24.92        43.76         6.15        34.78 
TCGA-21-1079 TCGA-22-4593 TCGA-22-4604 TCGA-22-4605 TCGA-22-5472 TCGA-22-5474 
       31.69        35.08        13.12        32.02        64.90        14.60 
TCGA-22-5482 TCGA-22-5483 TCGA-33-4538 TCGA-33-4566 TCGA-33-4583 TCGA-34-2596 
       11.74        18.84        97.94       173.79       141.34         2.63 
TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 TCGA-34-5240 TCGA-37-3792 TCGA-39-5019 
       28.96        31.23        50.24         7.73         0.39        44.71 
TCGA-39-5037 TCGA-43-3394 TCGA-43-6770 TCGA-52-7809 TCGA-56-7222 TCGA-56-7579 
       35.70        27.02        10.19         5.42         0.43         1.45 
TCGA-56-7582 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 TCGA-60-2696 
        0.85        44.09         0.66        34.36        21.07         3.58 
TCGA-60-2706 TCGA-60-2710 TCGA-60-2711 TCGA-60-2719 TCGA-60-2722 TCGA-60-2724 
       92.71        66.51        41.39        42.61        29.85        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2754 TCGA-66-2767 TCGA-66-2769 
       26.79        11.77        43.10         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-68-7755 TCGA-77-7140 TCGA-77-7141 
       23.01         3.02         2.01         2.73        20.78         0.49 
TCGA-77-7463 TCGA-77-7465 TCGA-85-6561 TCGA-85-6798 TCGA-85-7844 TCGA-85-7950 
       46.78        15.75         0.79         1.12         1.25         1.97 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8351 TCGA-85-8352 
        1.97         0.53         1.41         0.43         1.81         2.20 
TCGA-85-8354 TCGA-85-8481 TCGA-85-8664 TCGA-90-7769 TCGA-92-7341 TCGA-94-7943 
        2.01         0.66         0.10         0.59         3.48         4.70 
TCGA-96-7545 TCGA-98-8020 TCGA-98-8021 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE 
       44.15         2.73        13.58        14.76         1.18        56.61 
TCGA-NC-A5HG 
       50.86 

$`15Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51        28.34         1.61         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       27.16       119.54        46.88        99.16        70.13        60.89 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.55       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.08        29.85        21.73        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       38.17        34.75        19.30         9.53        11.77        31.73 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60         7.63       114.05 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       103.53        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-5232 TCGA-34-5234 
       26.99        61.61        31.50        32.84        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.43         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.82         6.81         0.39         3.39        47.80        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
        1.94        27.35        36.39        15.58        35.64        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.06        24.59        22.49        13.12        11.74        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.36        12.46         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        1.58        66.51         6.64         6.35         2.93         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
       10.65        13.87         0.39         0.39        29.95        17.79 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 
        1.02         0.99         0.99         1.32         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.53         1.12         0.99         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43         8.94 
TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       16.47        36.59        17.72        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2713 
       37.94        21.70        80.42        49.48         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       50.33        35.34        48.49         3.16        32.28        35.90 
TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       16.96         2.01        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
        1.02         2.01        19.00        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
        4.01        49.05         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 
       42.25        70.09       106.95         0.16         6.51        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 
       53.95        82.92       104.09        27.39         9.63        55.33 
TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 
       35.90         0.33        30.81        23.44         0.36         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8071 
        0.33         1.61         0.03         1.15         0.85         0.46 
TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8353 
        1.18         0.36         1.45         1.78         1.97         1.78 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL 
        0.66         0.72         0.89         0.13         0.46         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         1.55 
TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 
        2.93         3.29         8.02        10.88         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 
        5.26         2.27         2.86         0.16        39.88         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        6.90         8.42         7.33        10.13         7.30         1.15 
TCGA-MF-A522 TCGA-NC-A5HI 
        3.02        37.32 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.10               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            173.79             122.43 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            13.020             11.405 
[1] "0.1 - 173.8 (13.0)" "0.0 - 122.4 (11.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
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"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "15Q GAIN MUTATED"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D27V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q GAIN MUTATED         0        9       29        0        14        15
  15Q GAIN WILD-TYPE       1       58      102        1        31        50
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  15Q GAIN MUTATED           13          4        2
  15Q GAIN WILD-TYPE         40         16        3
D27V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED    16  58  10   3
  15Q GAIN WILD-TYPE  76 181  32  15
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1               16                 76
  T2               58                181
  T3               10                 32
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  15Q GAIN MUTATED    48  31   6   1
  15Q GAIN WILD-TYPE 197  72  27   4
D27V5, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0               48                197
  N1               31                 72
  N2                6                 27
  N3                1                  4
                    vv
clus                  M0  M1  MX
  15Q GAIN MUTATED    77   2   7
  15Q GAIN WILD-TYPE 256   3  40
D27V6, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  M0               77                256
  M1                2                  3
  MX                7                 40
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    18  69
  15Q GAIN WILD-TYPE  80 224
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     18   69
  15Q GAIN WILD-TYPE   80  224
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE               18                 80
  MALE                 69                224
D27V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                       5
  15Q GAIN WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q GAIN MUTATED                                        1
  15Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q GAIN MUTATED                                         0
  15Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q GAIN MUTATED                                                            81
  15Q GAIN WILD-TYPE                                                         292
D27V9, multiclass
                                                             clus
vv                                                            15Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               81
                                                             clus
vv                                                            15Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                292
D27V10, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED     1  86
  15Q GAIN WILD-TYPE  11 293
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      1   86
  15Q GAIN WILD-TYPE   11  293
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 1                 11
  YES               86                293
D27V11, continuous
D27V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q GAIN MUTATED    75   1   0   4
  15Q GAIN WILD-TYPE 242   6   4  14
D27V13, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  R0               75                242
  R1                1                  6
  R2                0                  4
  RX                4                 14

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    35  23
  16P GAIN WILD-TYPE 200  99
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                58                299 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                23                 99 
$`16P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3416 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1081 
       11.34        28.34        27.16        46.88        99.16         9.30 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5787 TCGA-22-1017 TCGA-22-4593 TCGA-33-4532 
        8.78        88.08        10.82        48.82        35.08         7.63 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2604 TCGA-34-5240 TCGA-34-5241 
      141.34        14.07        54.44        31.50         7.73        14.07 
TCGA-34-7107 TCGA-37-4135 TCGA-37-5819 TCGA-39-5034 TCGA-39-5036 TCGA-43-2576 
        1.08         6.81         3.39        36.39        35.64        24.59 
TCGA-43-2578 TCGA-43-5668 TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-7222 
       22.49        11.47         8.75        28.93         2.04         0.43 
TCGA-56-7223 TCGA-56-8504 TCGA-58-8386 TCGA-60-2706 TCGA-60-2722 TCGA-60-2725 
        0.99         5.82         0.03        92.71        29.85        26.79 
TCGA-60-2726 TCGA-66-2737 TCGA-66-2756 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       11.77         2.01         0.99         2.01         2.01        23.01 
TCGA-66-2791 TCGA-66-2793 TCGA-77-7465 TCGA-77-8009 TCGA-77-8139 TCGA-85-6560 
        5.03        10.06        15.75        53.95       104.09         0.36 
TCGA-85-7696 TCGA-85-7843 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 
        0.59         1.15         1.18         0.43         1.45         1.97 
TCGA-92-7341 TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH 
        3.48         2.73         7.33         7.30 

$`16P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 
        2.79        90.51         3.02       119.54        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-5782 
       34.78        15.55        31.69       122.43       119.80        31.63 
TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       29.85        21.73        32.19        19.99         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 
        4.31        64.21         1.74        14.10        27.02        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
       10.98        19.76        26.99         2.63        61.61        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
       10.82        22.95         5.52         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 
        0.39         6.54         8.09         7.46         7.82         0.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       60.76         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 
       35.70        17.88        17.06        13.12        27.02        11.74 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05        12.36        12.46        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         1.58        66.51         6.64         6.35         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96        10.65        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 
       17.79         5.42        30.31        27.45         0.10         1.02 
TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.12         0.99         1.51         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.26        13.25        12.43         8.94        44.09        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 
        0.66        34.36        36.59        17.72        21.07         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 
       12.23        10.22        96.82        37.94        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.51        41.39         9.01        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 
       35.34        48.49        42.61         3.16        32.28        35.90 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.57        16.96        43.10        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         1.02         7.07        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 
       25.97        40.01        22.98         4.04        22.98        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 
      106.95         0.16        46.78         6.51        86.76        82.92 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB 
       27.39         9.63        55.33        35.90         0.33        30.81 
TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       23.44         0.79         1.12         0.33         1.61         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.25         1.97         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8277 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        0.46         0.36         1.78         1.81         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66         0.89         0.13 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10         0.46         0.46         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.89         1.55         2.93         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        8.02        10.88         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        44.15         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        6.90         8.42        13.58        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.03               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            141.34             173.79 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              9.68              12.16 
[1] "0.0 - 141.3 (9.7)"  "0.0 - 173.8 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D28V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P GAIN MUTATED         0       10       18        1         9        11
  16P GAIN WILD-TYPE       1       57      113        0        36        54
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16P GAIN MUTATED            9          5        1
  16P GAIN WILD-TYPE         44         15        4
D28V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN MUTATED    13  42   8   2
  16P GAIN WILD-TYPE  79 197  34  16
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1               13                 79
  T2               42                197
  T3                8                 34
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  16P GAIN MUTATED    38  19   5   2
  16P GAIN WILD-TYPE 207  84  28   3
D28V5, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0               38                207
  N1               19                 84
  N2                5                 28
  N3                2                  3
                    vv
clus                  M0  M1  MX
  16P GAIN MUTATED    58   1   5
  16P GAIN WILD-TYPE 275   4  42
D28V6, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  M0               58                275
  M1                1                  4
  MX                5                 42
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    10  55
  16P GAIN WILD-TYPE  88 238
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     10   55
  16P GAIN WILD-TYPE   88  238
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               10                 88
  MALE                 55                238
D28V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                       1
  16P GAIN WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P GAIN MUTATED                                        1
  16P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P GAIN MUTATED                                         1
  16P GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P GAIN MUTATED                                                            62
  16P GAIN WILD-TYPE                                                         311
D28V9, multiclass
                                                             clus
vv                                                            16P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               62
                                                             clus
vv                                                            16P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                311
D28V10, binary
                    cls
clus                   0   1
  16P GAIN MUTATED     2  63
  16P GAIN WILD-TYPE  10 316
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      2   63
  16P GAIN WILD-TYPE   10  316
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 2                 10
  YES               63                316
D28V11, continuous
D28V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P GAIN MUTATED    55   1   0   2
  16P GAIN WILD-TYPE 262   6   4  16
D28V13, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  R0               55                262
  R1                1                  6
  R2                0                  4
  RX                2                 16

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    38  19
  16Q GAIN WILD-TYPE 197 103
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                57                300 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                19                103 
$`16Q GAIN MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 
       11.34        13.02        28.34        27.16        46.88        99.16 
TCGA-21-1079 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-22-1017 TCGA-22-4593 
       31.69        88.08        21.73        10.82        48.82        35.08 
TCGA-33-4532 TCGA-33-4587 TCGA-34-5241 TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 
        7.63        54.44        14.07         1.08         7.82         6.81 
TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-5668 TCGA-43-6143 TCGA-52-7811 
       35.64        35.70        24.59        11.47        12.36         8.75 
TCGA-56-1622 TCGA-56-6545 TCGA-56-7223 TCGA-56-8504 TCGA-58-8386 TCGA-58-A46K 
       28.93         2.04         0.99         5.82         0.03        34.36 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 
       92.71        80.42        29.85        26.79        11.77         2.01 
TCGA-66-2756 TCGA-66-2768 TCGA-66-2770 TCGA-66-2781 TCGA-66-2791 TCGA-77-7465 
        0.99         2.01        23.01         3.98         5.03        15.75 
TCGA-77-8009 TCGA-85-6560 TCGA-85-7696 TCGA-85-7843 TCGA-85-8072 TCGA-85-8276 
       53.95         0.36         0.59         1.15         1.18         0.43 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-A53L TCGA-92-7341 TCGA-98-8020 
        1.45         1.97         2.20         0.43         3.48         2.73 
TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
        7.33         7.30         1.18 

$`16Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       90.51         3.02       119.54        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.55       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       64.21         1.74        14.10        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
      114.05        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       14.07        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04        10.82         7.73        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.46         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 
        1.94        27.35        36.39        15.58        17.88        17.06 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 
       22.49        13.12        27.02        11.74        18.05        12.46 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.64         6.35         2.93         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39        29.95        17.79         5.42        30.31 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
       27.45         0.10         1.02         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        1.32         0.85         0.20         0.03         1.35         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 
        1.51         0.99         1.02         0.13         0.26        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L 
       12.43         8.94        44.09        16.47         0.66        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       37.94        21.70        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       32.28        35.90        23.57        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 
       25.02         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       19.00         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
        6.51        86.76        82.92       104.09        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
       55.33        35.90         0.33        30.81        23.44         0.79 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
        1.12         0.33         1.61         0.03         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 
        0.85         1.97         0.53         1.41         0.46         0.36 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.78         1.81         1.78         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66         0.89         0.13         0.10         0.46         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.82         0.62         0.79        24.89         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 
        0.59         3.29         8.02        10.88         2.70         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 
       44.15         6.18         6.90         8.42        13.58        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76         3.02        56.61        50.86        37.32 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.03               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             99.16             173.79 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            10.820             12.015 
[1] "0.0 - 99.2 (10.8)"  "0.0 - 173.8 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D29V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q GAIN MUTATED         0        8       20        1        11        10
  16Q GAIN WILD-TYPE       1       59      111        0        34        55
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16Q GAIN MUTATED            9          4        2
  16Q GAIN WILD-TYPE         44         16        3
D29V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN MUTATED    12  42   7   4
  16Q GAIN WILD-TYPE  80 197  35  14
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1               12                 80
  T2               42                197
  T3                7                 35
  T4                4                 14
                    vv
clus                  N0  N1  N2  N3
  16Q GAIN MUTATED    39  20   4   1
  16Q GAIN WILD-TYPE 206  83  29   4
D29V5, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0               39                206
  N1               20                 83
  N2                4                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  16Q GAIN MUTATED    57   2   6
  16Q GAIN WILD-TYPE 276   3  41
D29V6, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  M0               57                276
  M1                2                  3
  MX                6                 41
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     7  58
  16Q GAIN WILD-TYPE  91 235
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      7   58
  16Q GAIN WILD-TYPE   91  235
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE                7                 91
  MALE                 58                235
D29V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                       2
  16Q GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q GAIN MUTATED                                        1
  16Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q GAIN MUTATED                                         1
  16Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q GAIN MUTATED                                                            61
  16Q GAIN WILD-TYPE                                                         312
D29V9, multiclass
                                                             clus
vv                                                            16Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               61
                                                             clus
vv                                                            16Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                312
D29V10, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     2  63
  16Q GAIN WILD-TYPE  10 316
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      2   63
  16Q GAIN WILD-TYPE   10  316
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 2                 10
  YES               63                316
D29V11, continuous
D29V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q GAIN MUTATED    56   2   0   3
  16Q GAIN WILD-TYPE 261   5   4  15
D29V13, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  R0               56                261
  R1                2                  5
  R2                0                  4
  RX                3                 15

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    36  16
  17P GAIN WILD-TYPE 199 106
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                52                305 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                16                106 
$`17P GAIN MUTATED`
TCGA-18-3412 TCGA-18-3417 TCGA-21-1072 TCGA-21-A5DI TCGA-22-1017 TCGA-22-4593 
       11.34        24.92        99.16        32.19        48.82        35.08 
TCGA-22-4601 TCGA-22-4613 TCGA-22-5474 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 
       34.75        11.77        14.60         7.63        97.94       103.53 
TCGA-34-2596 TCGA-34-5240 TCGA-34-5241 TCGA-43-2578 TCGA-43-7657 TCGA-43-8118 
        2.63         7.73        14.07        22.49         1.58         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-56-7222 TCGA-56-7730 TCGA-56-8504 TCGA-58-8391 
        9.96        10.65         0.43         0.20         5.82        44.09 
TCGA-58-A46K TCGA-60-2726 TCGA-66-2756 TCGA-66-2770 TCGA-66-2787 TCGA-66-2792 
       34.36        11.77         0.99        23.01        40.01        30.02 
TCGA-68-8250 TCGA-68-8251 TCGA-77-7142 TCGA-77-7465 TCGA-77-8156 TCGA-85-7843 
        8.02         3.12        42.25        15.75         0.33         1.15 
TCGA-85-7950 TCGA-85-8049 TCGA-85-8277 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 
        1.97         1.97         0.36         1.97         2.20         1.78 
TCGA-85-8354 TCGA-85-8664 TCGA-90-7769 TCGA-92-7340 TCGA-94-7557 TCGA-94-7943 
        2.01         0.10         0.59         2.70         0.16         4.70 
TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
        2.73         7.30        14.76         3.02 

$`17P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        28.34         1.61        43.76         6.15 
TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        2.79        90.51         3.02        27.16       119.54        46.88 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.73        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
       64.21         1.74        14.10        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 
        9.53        31.73        64.90        63.52        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 
       62.86        56.32        16.60       114.05        43.10       173.79 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68         9.04        10.82        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        24.59 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        27.02        11.74        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       12.46        10.19         5.42         3.78         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        6.64         6.35        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.42        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 
        1.32         0.85         0.03         1.35         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N 
       12.43         8.94        16.47         0.66        36.59        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       21.07         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
        3.16        32.28        29.85        35.90        23.57        26.79 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.92         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
        2.01         1.02         2.01         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 
       24.95         1.94        25.97        22.98         4.04        22.98 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
        5.03        10.06        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        6.64         6.94        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 
       11.18        89.95        20.78         0.49        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
        0.16        46.78         6.51        86.76        53.95        82.92 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB 
      104.09        27.39         9.63        55.33        35.90        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 
        1.61         0.03         1.25         0.85         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 
        0.46         1.18         0.43         1.45         1.78         1.81 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 
        0.66         0.72         0.66         0.89         0.13         0.46 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 
        1.55         2.93         3.29         8.02        10.88         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 
        4.01         5.26         2.27         2.86        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.18         6.90         8.42        13.58         7.33        10.13 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15         1.18        56.61        50.86        37.32 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.10               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            103.53             173.79 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              7.68              12.36 
[1] "0.1 - 103.5 (7.7)"  "0.0 - 173.8 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D30V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P GAIN MUTATED         1       10       15        0         8         8
  17P GAIN WILD-TYPE       0       57      116        1        37        57
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17P GAIN MUTATED            9          1        1
  17P GAIN WILD-TYPE         44         19        4
D30V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED    11  35   6   2
  17P GAIN WILD-TYPE  81 204  36  16
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1               11                 81
  T2               35                204
  T3                6                 36
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  17P GAIN MUTATED    33  16   4   0
  17P GAIN WILD-TYPE 212  87  29   5
D30V5, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0               33                212
  N1               16                 87
  N2                4                 29
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17P GAIN MUTATED    44   1   8
  17P GAIN WILD-TYPE 289   4  39
D30V6, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  M0               44                289
  M1                1                  4
  MX                8                 39
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    12  42
  17P GAIN WILD-TYPE  86 251
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     12   42
  17P GAIN WILD-TYPE   86  251
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE               12                 86
  MALE                 42                251
D30V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                       2
  17P GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P GAIN MUTATED                                        1
  17P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P GAIN MUTATED                                         0
  17P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P GAIN MUTATED                                                            51
  17P GAIN WILD-TYPE                                                         322
D30V9, multiclass
                                                             clus
vv                                                            17P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               51
                                                             clus
vv                                                            17P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                322
D30V10, binary
                    cls
clus                   0   1
  17P GAIN MUTATED     0  54
  17P GAIN WILD-TYPE  12 325
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      0   54
  17P GAIN WILD-TYPE   12  325
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 0                 12
  YES               54                325
D30V11, continuous
D30V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P GAIN MUTATED    40   1   0   3
  17P GAIN WILD-TYPE 277   6   4  15
D30V13, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  R0               40                277
  R1                1                  6
  R2                0                  4
  RX                3                 15

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED    72  41
  17Q GAIN WILD-TYPE 163  81
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               113                244 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                41                 81 
$`17Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3417 TCGA-21-1071 
        4.47         4.80        46.52        11.34        24.92        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1082 TCGA-21-1083 TCGA-21-5787 
       99.16        70.13        34.78       119.80         8.78        10.82 
TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       14.10        48.82        35.08        38.17        34.75        13.12 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5483 
       11.77        31.73        63.52        14.60        44.22        18.84 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4586 TCGA-33-6738 TCGA-34-2596 
        7.63        97.94       103.53        14.07        26.99         2.63 
TCGA-34-2604 TCGA-34-5231 TCGA-34-5240 TCGA-37-3792 TCGA-37-4133 TCGA-39-5016 
       31.50        50.24         7.73         0.39         7.82        74.07 
TCGA-39-5019 TCGA-39-5027 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 TCGA-43-5668 
       44.71        60.76        35.70        24.59        22.49        11.47 
TCGA-43-7657 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7812 
        1.58         2.93         9.96        10.65        13.87        27.45 
TCGA-56-1622 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 
       28.93         0.43         0.99         0.85         0.20         5.82 
TCGA-56-8629 TCGA-56-A4BX TCGA-58-8386 TCGA-58-8391 TCGA-58-A46K TCGA-58-A46N 
        1.12         1.51         0.03        44.09        34.36        17.72 
TCGA-60-2703 TCGA-60-2707 TCGA-60-2715 TCGA-60-2726 TCGA-66-2742 TCGA-66-2756 
       96.82        21.70        35.34        11.77        21.07         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 
       20.98         0.99         2.01        23.01         3.02         2.01 
TCGA-66-2781 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-68-7755 
        3.98        40.01         5.03        30.02        10.06         2.73 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 TCGA-77-7138 TCGA-77-7141 
        8.02         3.12        29.56        23.28        11.18         0.49 
TCGA-77-7142 TCGA-77-7465 TCGA-77-8007 TCGA-77-8156 TCGA-85-6560 TCGA-85-7843 
       42.25        15.75         6.51         0.33         0.36         1.15 
TCGA-85-7844 TCGA-85-8049 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8350 
        1.25         1.97         1.41         0.43         0.36         1.97 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        2.20         1.78         2.01         0.10         0.46         0.46 
TCGA-85-A4QR TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 
        0.82         2.93         0.59         8.02         2.70         3.48 
TCGA-96-7545 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-MF-A522 
       44.15        10.13         7.30        14.76         3.02 

$`17Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       12.16        81.07        79.46        13.02        59.51        28.34 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.61        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       27.16       119.54        60.89        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI 
        9.30        31.63        88.08        29.85        21.73        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4605 
       27.02        20.45        48.33        24.13         0.56        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       19.30         9.53        64.90         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       79.20        11.74        30.08        62.86        56.32        16.60 
TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
      114.05        43.10       173.79       141.34        54.44        10.98 
TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       19.76        61.61        28.96        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       32.68         9.04        10.82        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
        4.96         1.08         3.95         0.43         6.54         8.09 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5021 
        7.46         6.81         0.39         3.39        47.80        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2581 
       36.39        15.58        35.64        17.88        17.06        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        11.74        18.05        12.36        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97        66.51         6.64         6.35 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
        0.39         0.39        29.95        17.79         5.42        30.31 
TCGA-52-7811 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 
        8.75         0.10         2.04         1.02         0.99         1.45 
TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        1.32         0.03         1.35         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.56         0.53         0.99         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 
        0.26        13.25        12.43         8.94        16.47         0.66 
TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
       36.59        21.07         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       92.71        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       56.91        50.33        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       29.85        35.90        23.57        26.79        16.96        43.10 
TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
        2.01         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
       25.02         2.01         1.02         2.01         7.07        19.00 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         4.04        22.98        54.08         4.01        49.05 
TCGA-68-7756 TCGA-68-7757 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 TCGA-77-7140 
        6.64         6.94        73.08        75.09        89.95        20.78 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 
       70.09       106.95         0.16        46.78        86.76        53.95 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       82.92       104.09        27.39         9.63        55.33        35.90 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       30.81        23.44         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 TCGA-85-8071 
        1.61         0.03         1.97         0.85         0.53         0.46 
TCGA-85-8072 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 
        1.18         1.45         1.78         1.81         0.66         0.72 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.66         0.89         0.13         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4EE TCGA-92-8063 TCGA-92-8064 
       24.89         1.55         3.29        10.88         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 
        2.27         2.86         0.16         4.70        39.88         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-L3-A4E7 
        6.90         8.42         2.73        13.58         7.33         1.15 
TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18        56.61        50.86        37.32 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.03               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            119.80             173.79 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            10.650             12.295 
[1] "0.0 - 119.8 (10.7)" "0.0 - 173.8 (12.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D31V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q GAIN MUTATED         0       15       39        0        19        19
  17Q GAIN WILD-TYPE       1       52       92        1        26        46
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17Q GAIN MUTATED           18          5        3
  17Q GAIN WILD-TYPE         35         15        2
D31V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN MUTATED    21  82  12   4
  17Q GAIN WILD-TYPE  71 157  30  14
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1               21                 71
  T2               82                157
  T3               12                 30
  T4                4                 14
                    vv
clus                  N0  N1  N2  N3
  17Q GAIN MUTATED    68  38  10   2
  17Q GAIN WILD-TYPE 177  65  23   3
D31V5, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0               68                177
  N1               38                 65
  N2               10                 23
  N3                2                  3
                    vv
clus                  M0  M1  MX
  17Q GAIN MUTATED   100   3  15
  17Q GAIN WILD-TYPE 233   2  32
D31V6, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  M0              100                233
  M1                3                  2
  MX               15                 32
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    19 100
  17Q GAIN WILD-TYPE  79 193
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     19  100
  17Q GAIN WILD-TYPE   79  193
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               19                 79
  MALE                100                193
D31V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                       4
  17Q GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q GAIN MUTATED                                        1
  17Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q GAIN MUTATED                                         0
  17Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q GAIN MUTATED                                                           114
  17Q GAIN WILD-TYPE                                                         259
D31V9, multiclass
                                                             clus
vv                                                            17Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              114
                                                             clus
vv                                                            17Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                259
D31V10, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED     4 115
  17Q GAIN WILD-TYPE   8 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      4  115
  17Q GAIN WILD-TYPE    8  264
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 4                  8
  YES              115                264
D31V11, continuous
D31V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q GAIN MUTATED    96   2   2   4
  17Q GAIN WILD-TYPE 221   5   2  14
D31V13, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  R0               96                221
  R1                2                  5
  R2                2                  2
  RX                4                 14

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    75  36
  18P GAIN WILD-TYPE 160  86
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
               111                246 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                36                 86 
$`18P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3416 TCGA-18-4083 TCGA-21-1075 
        4.47        46.52        11.34        28.34         6.15        70.13 
TCGA-21-1079 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-4591 
       31.69        88.08        29.85        21.73         7.33        20.45 
TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5480 TCGA-22-5483 
       24.13        13.12        11.77        31.73        71.34        18.84 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4566 TCGA-33-4586 TCGA-34-2596 
       62.86        56.32         7.63       173.79        14.07         2.63 
TCGA-34-2604 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-37-3792 
       31.50        50.24         9.04        10.82         7.73         0.39 
TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5029 
        0.39        74.07        44.71        68.58        60.76        24.33 
TCGA-39-5031 TCGA-39-5037 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-5670 
       27.35        35.70        17.06        24.59        22.49        18.05 
TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-8118 TCGA-46-6026 TCGA-51-4081 
       12.36         1.58        66.51         2.93        13.87        29.95 
TCGA-52-7811 TCGA-56-6546 TCGA-56-7223 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BX 
        8.75         1.02         0.99         0.20         0.99         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8386 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46N 
        0.99         0.26         0.03        44.09        16.47        17.72 
TCGA-60-2698 TCGA-60-2711 TCGA-60-2712 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       10.22        41.39         9.01        29.85        35.90        26.79 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2758 TCGA-66-2759 TCGA-66-2767 TCGA-66-2769 
       11.77        43.10        20.98        25.02         2.01         7.07 
TCGA-66-2770 TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 
       23.01         2.01        24.95        40.01        10.06        54.08 
TCGA-66-2800 TCGA-68-7755 TCGA-77-6845 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 
       49.05         2.73        23.28        70.09        46.78        15.75 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 
       53.95        82.92        55.33         0.33        30.81         0.79 
TCGA-85-6798 TCGA-85-7843 TCGA-85-7844 TCGA-85-8049 TCGA-85-8070 TCGA-85-8071 
        1.12         1.15         1.25         1.97         1.41         0.46 
TCGA-85-8276 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8664 TCGA-85-8666 
        0.43         2.20         1.78         2.01         0.10         0.46 
TCGA-85-A50M TCGA-90-7769 TCGA-92-8064 TCGA-96-7545 TCGA-98-8021 TCGA-J1-A4AH 
        0.62         0.59         5.26        44.15        13.58         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HI 
        1.15        14.76        37.32 

$`18P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       24.92         1.61        43.76         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 
       27.16       119.54        46.88        99.16        60.89        34.78 
TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.55       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       10.82        32.19        19.99        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
        1.74        14.10        27.02        48.82        35.08        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        38.17        34.75        32.02        19.30         9.53 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 
       79.20        11.74        30.08        16.60       114.05        97.94 
TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
       43.10       103.53       141.34        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 
       26.99        61.61        28.96        32.84        31.23        51.78 
TCGA-34-5234 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       32.68        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        6.81         3.39        47.80        55.17        70.03         1.71 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2581 
        1.94        36.39        15.58        35.64        17.88        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       27.02        11.74        11.47        12.46        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        3.78         6.97         6.64         6.35         9.96        10.65 
TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 
        0.39         0.39        17.79         5.42        30.31        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 
       28.93         0.10         2.04         0.99         0.43         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.32         0.85         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4ZJ 
        1.18         2.07         0.56         0.53         1.12         1.02 
TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8393 TCGA-58-A46K 
        0.13        13.25        12.43         8.94         0.66        34.36 
TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       36.59        21.07         3.58        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 
       92.71        21.70        80.42        49.48        66.51        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       23.57        16.96         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 
        1.02         2.01        19.00         3.02        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00         1.94        25.97        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7756 TCGA-68-7757 
       22.98         5.03        30.02         4.01         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 
        8.02         3.12        29.56        73.08        75.09        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 
       89.95        20.78         0.49        42.25       106.95         0.16 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8154 
        6.51        86.76       104.09        27.39         9.63        35.90 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       23.44         0.36         0.59         0.33         1.61         0.03 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 
        1.97         0.85         0.53         1.18         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.78         1.97         1.81         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L 
        0.89         0.13         0.46         0.82         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         1.55         2.93         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        2.70         3.48         4.01         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
        4.70        39.88         6.18         6.90         8.42         2.73 
TCGA-98-8022 TCGA-98-8023 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        7.33        10.13         1.18         3.02        56.61        50.86 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.03               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            173.79             141.34 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
             14.76              10.42 
[1] "0.0 - 173.8 (14.8)" "0.0 - 141.3 (10.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
[1] "hr=" "1.1"
D32V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P GAIN MUTATED         0       16       39        0        18        19
  18P GAIN WILD-TYPE       1       51       92        1        27        46
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18P GAIN MUTATED           17         10        1
  18P GAIN WILD-TYPE         36         10        4
D32V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P GAIN MUTATED    22  79  13   6
  18P GAIN WILD-TYPE  70 160  29  12
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1               22                 70
  T2               79                160
  T3               13                 29
  T4                6                 12
                    vv
clus                  N0  N1  N2  N3
  18P GAIN MUTATED    69  33  14   2
  18P GAIN WILD-TYPE 176  70  19   3
D32V5, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0               69                176
  N1               33                 70
  N2               14                 19
  N3                2                  3
                    vv
clus                  M0  M1  MX
  18P GAIN MUTATED   106   1  12
  18P GAIN WILD-TYPE 227   4  35
D32V6, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  M0              106                227
  M1                1                  4
  MX               12                 35
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    26  94
  18P GAIN WILD-TYPE  72 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     26   94
  18P GAIN WILD-TYPE   72  199
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               26                 72
  MALE                 94                199
D32V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                       4
  18P GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P GAIN MUTATED                                        1
  18P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P GAIN MUTATED                                         0
  18P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P GAIN MUTATED                                                           115
  18P GAIN WILD-TYPE                                                         258
D32V9, multiclass
                                                             clus
vv                                                            18P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              115
                                                             clus
vv                                                            18P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                258
D32V10, binary
                    cls
clus                   0   1
  18P GAIN MUTATED     6 114
  18P GAIN WILD-TYPE   6 265
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      6  114
  18P GAIN WILD-TYPE    6  265
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 6                  6
  YES              114                265
D32V11, continuous
D32V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P GAIN MUTATED    97   1   3   6
  18P GAIN WILD-TYPE 220   6   1  12
D32V13, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  R0               97                220
  R1                1                  6
  R2                3                  1
  RX                6                 12

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    55  32
  18Q GAIN WILD-TYPE 180  90
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                87                270 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                32                 90 
$`18Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-4083 TCGA-21-1075 TCGA-21-5783 TCGA-21-5784 
        4.47        46.52         6.15        70.13        88.08        29.85 
TCGA-22-1012 TCGA-22-4595 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 TCGA-22-5478 
       14.10        24.13        13.12        11.77        31.73         0.79 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 
       71.34        79.20        11.74        18.84        62.86        56.32 
TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-34-2596 TCGA-34-2604 
        7.63       173.79       103.53        14.07         2.63        31.50 
TCGA-34-2609 TCGA-34-5236 TCGA-34-5239 TCGA-37-4141 TCGA-39-5016 TCGA-39-5019 
       31.23         9.04        10.82         0.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5029 TCGA-39-5031 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 
       68.58        24.33        27.35        35.70        17.06        22.49 
TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-46-6026 
       11.74        12.36         1.58        66.51         6.64        13.87 
TCGA-51-4081 TCGA-52-7811 TCGA-56-6546 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BX 
       29.95         8.75         1.02         0.20         0.99         1.51 
TCGA-58-8392 TCGA-58-A46N TCGA-60-2695 TCGA-60-2711 TCGA-60-2712 TCGA-60-2722 
       16.47        17.72        21.07        41.39         9.01        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-66-2758 TCGA-66-2759 TCGA-66-2769 TCGA-66-2770 
       35.90        26.79        20.98        25.02         7.07        23.01 
TCGA-66-2777 TCGA-66-2787 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
        2.01        40.01        10.06        54.08        49.05         2.73 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8009 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB 
       46.78        15.75        53.95        55.33         0.33        30.81 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7843 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 
        0.79         1.12         1.15         1.41         0.46         0.43 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A50M TCGA-92-8064 TCGA-96-7545 TCGA-98-8021 
        0.10         0.46         0.62         5.26        44.15        13.58 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-MF-A522 
        7.30         1.15         3.02 

$`18Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 
       12.16        81.07        79.46         4.80        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       59.51        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       119.54        46.88        99.16 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
      119.80         8.78        31.63        21.73        10.82        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4596 
       27.02        48.82        20.45        35.08        48.33         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 
       38.17        34.75        32.02        19.30         9.53        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5485 TCGA-22-5492 
       63.52        14.60        44.22        54.28        30.08        16.60 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
      114.05        97.94        43.10       141.34        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 
       19.76        26.99        61.61        28.96        32.84        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
       51.78        32.68         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        4.96         1.08         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         7.82         6.81         3.39        47.80 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5034 
       55.17        70.03        60.76         1.71         1.94        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 
       15.58        35.64        17.88        24.59        13.12        27.02 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        18.05        12.46        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
        6.97         6.35         2.93         9.96        10.65         0.39 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 
        0.39        17.79         5.42        30.31        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        0.10         2.04         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.32         0.85         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.02         0.13         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-60-2696 
        8.94        44.09         0.66        34.36        36.59         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       12.23        10.22        96.82        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       80.42        49.48        66.51        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 
       48.49        42.61         3.16        32.28        23.57        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 TCGA-66-2765 
        2.01         0.92         0.99         0.99         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        1.02         2.01         2.01        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
       22.98         4.04        22.98         5.03        30.02         4.01 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        6.64         6.94         8.02         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8007 TCGA-77-8008 
       42.25        70.09       106.95         0.16         6.51        86.76 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8154 TCGA-77-A5GH 
       82.92       104.09        27.39         9.63        35.90        23.44 
TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 
        0.36         0.59         0.33         1.61         0.03         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-85-8277 
        1.97         0.85         1.97         0.53         1.18         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        1.45         1.78         1.97         1.81         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66         0.89         0.13 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.46         0.82         0.79         0.43        24.89         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93         0.59         3.29         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        3.48         4.01         2.27         2.86         0.16         4.70 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 
       39.88         6.18         6.90         8.42         2.73         7.33 
TCGA-98-8023 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       10.13        14.76         1.18        56.61        50.86        37.32 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.10               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            173.79             141.34 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            15.750             10.205 
[1] "0.1 - 173.8 (15.8)" "0.0 - 141.3 (10.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
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  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
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        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D33V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q GAIN MUTATED         0       14       34        0        16        12
  18Q GAIN WILD-TYPE       1       53       97        1        29        53
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18Q GAIN MUTATED            9          7        0
  18Q GAIN WILD-TYPE         44         13        5
D33V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED    20  64   3   5
  18Q GAIN WILD-TYPE  72 175  39  13
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1               20                 72
  T2               64                175
  T3                3                 39
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  18Q GAIN MUTATED    57  24  10   0
  18Q GAIN WILD-TYPE 188  79  23   5
D33V5, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0               57                188
  N1               24                 79
  N2               10                 23
  N3                0                  5
                    vv
clus                  M0  M1  MX
  18Q GAIN MUTATED    82   0   9
  18Q GAIN WILD-TYPE 251   5  38
D33V6, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  M0               82                251
  M1                0                  5
  MX                9                 38
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    20  72
  18Q GAIN WILD-TYPE  78 221
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     20   72
  18Q GAIN WILD-TYPE   78  221
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE               20                 78
  MALE                 72                221
D33V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                       4
  18Q GAIN WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q GAIN MUTATED                                        0
  18Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q GAIN MUTATED                                         0
  18Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q GAIN MUTATED                                                            88
  18Q GAIN WILD-TYPE                                                         285
D33V9, multiclass
                                                             clus
vv                                                            18Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               88
                                                             clus
vv                                                            18Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                285
D33V10, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     5  87
  18Q GAIN WILD-TYPE   7 292
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      5   87
  18Q GAIN WILD-TYPE    7  292
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 5                  7
  YES               87                292
D33V11, continuous
D33V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q GAIN MUTATED    77   1   2   2
  18Q GAIN WILD-TYPE 240   6   2  16
D33V13, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  R0               77                240
  R1                1                  6
  R2                2                  2
  RX                2                 16

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    52  26
  19P GAIN WILD-TYPE 183  96
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                78                279 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                26                 96 
$`19P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3421 TCGA-21-1076 TCGA-21-5787 
        4.47         4.80        46.52        43.76        60.89        10.82 
TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-4604 TCGA-22-5471 TCGA-22-5474 
       14.10        35.08        24.13        13.12        31.73        14.60 
TCGA-22-5477 TCGA-22-5481 TCGA-22-5483 TCGA-22-5489 TCGA-33-4533 TCGA-33-4538 
       44.22        79.20        18.84        62.86       114.05        97.94 
TCGA-33-4566 TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 
      173.79        14.07         2.63        61.61        28.96        50.24 
TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-39-5016 TCGA-39-5019 TCGA-39-5031 
       10.82         7.73         1.08        74.07        44.71        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-43-6143 TCGA-43-7657 TCGA-52-7809 TCGA-56-6546 
       36.39        15.58        12.36         1.58         5.42         1.02 
TCGA-56-7582 TCGA-56-A49D TCGA-58-8393 TCGA-58-A46N TCGA-60-2695 TCGA-60-2704 
        0.85         0.99         0.66        17.72        21.07        37.94 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2719 TCGA-60-2723 TCGA-66-2770 TCGA-66-2777 
       80.42         9.01        42.61        35.90        23.01         2.01 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2794 TCGA-66-2800 TCGA-68-8251 TCGA-77-6843 
        1.94        40.01        54.08        49.05         3.12        73.08 
TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 
       89.95         0.49        42.25        15.75        86.76        53.95 
TCGA-77-8148 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-7950 
        9.63         0.79         1.12         0.59         1.15         1.97 
TCGA-85-8277 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-A4QR TCGA-90-7769 
        0.36         1.78         2.01         0.72         0.82         0.59 
TCGA-92-7340 TCGA-92-8064 TCGA-96-7545 TCGA-98-8020 TCGA-J1-A4AH TCGA-LA-A446 
        2.70         5.26        44.15         2.73         7.30         1.18 

$`19P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       28.34        24.92         1.61         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       119.54        46.88        99.16        70.13 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       34.78        15.55        31.69       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI 
        8.78        31.63        88.08        29.85        21.73        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 
       19.99         7.33        14.93         4.31        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 
       27.02        48.82        20.45        48.33         0.56        38.17 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       34.75        32.02        19.30         9.53        11.77        64.90 
TCGA-22-5473 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 
       63.52         0.79        54.28        71.34        11.74        30.08 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       56.32        16.60         7.63        43.10       103.53       141.34 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 
       54.44        10.98        19.76        26.99        31.50        32.84 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 
       31.23        51.78        32.68         9.04        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
        5.52         4.96         3.95         0.43         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       47.80        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       24.33         1.94        35.64        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       24.59        22.49        13.12        27.02        11.74        11.47 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.46        10.19         5.42         3.78         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 
       66.51         6.64         6.35         2.93         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 
       13.87         0.39         0.39        29.95        17.79        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 
        8.75        27.45        28.93         0.10         2.04         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.45         1.32         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         1.12         1.51         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-A46K TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       16.47        34.36        36.59         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       96.82        92.71        21.70        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       56.91        50.33        35.34        48.49         3.16        32.28 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       29.85        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.99         0.99        20.98        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01         7.07        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       22.98         4.04        22.98         5.03        30.02        10.06 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 
        4.01         2.73         6.64         6.94         8.02        29.56 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 
       75.09        23.28        11.18        20.78        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
        0.16        46.78         6.51        82.92       104.09        27.39 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       55.33        35.90         0.33        30.81        23.44         0.36 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
        0.33         1.61         0.03         1.25         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.53         1.41         0.46         1.18         0.43         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 TCGA-85-8481 
        1.78         1.97         1.81         2.20         0.66         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M 
        0.89         0.13         0.10         0.46         0.46         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.79         0.43        24.89         1.55         2.93         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        8.02        10.88         3.48         4.01         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        0.16         4.70        39.88         6.18         6.90         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-MF-A522 
       13.58         7.33        10.13         1.15        14.76         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.36               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            173.79             141.34 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             14.35              11.18 
[1] "0.4 - 173.8 (14.3)" "0.0 - 141.3 (11.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED"   "19P GAIN MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D34V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P GAIN MUTATED         0       12       30        1        11        12
  19P GAIN WILD-TYPE       1       55      101        0        34        53
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19P GAIN MUTATED           12          5        0
  19P GAIN WILD-TYPE         41         15        5
D34V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED    16  54   9   4
  19P GAIN WILD-TYPE  76 185  33  14
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1               16                 76
  T2               54                185
  T3                9                 33
  T4                4                 14
                    vv
clus                  N0  N1  N2  N3
  19P GAIN MUTATED    52  23   8   0
  19P GAIN WILD-TYPE 193  80  25   5
D34V5, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0               52                193
  N1               23                 80
  N2                8                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P GAIN MUTATED    73   0   9
  19P GAIN WILD-TYPE 260   5  38
D34V6, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  M0               73                260
  M1                0                  5
  MX                9                 38
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED    22  61
  19P GAIN WILD-TYPE  76 232
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     22   61
  19P GAIN WILD-TYPE   76  232
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE               22                 76
  MALE                 61                232
D34V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                       6
  19P GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P GAIN MUTATED                                        1
  19P GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P GAIN MUTATED                                         0
  19P GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P GAIN MUTATED                                                            76
  19P GAIN WILD-TYPE                                                         297
D34V9, multiclass
                                                             clus
vv                                                            19P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               76
                                                             clus
vv                                                            19P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                297
D34V10, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     4  79
  19P GAIN WILD-TYPE   8 300
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      4   79
  19P GAIN WILD-TYPE    8  300
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 4                  8
  YES               79                300
D34V11, continuous
D34V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P GAIN MUTATED    67   1   1   5
  19P GAIN WILD-TYPE 250   6   3  13
D34V13, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  R0               67                250
  R1                1                  6
  R2                1                  3
  RX                5                 13

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    67  45
  19Q GAIN WILD-TYPE 168  77
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
               112                245 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                45                 77 
$`19Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 
        4.47         4.80        46.52        24.92        43.76       119.54 
TCGA-21-1071 TCGA-21-1076 TCGA-21-1081 TCGA-21-5786 TCGA-21-5787 TCGA-22-1012 
       46.88        60.89         9.30        21.73        10.82        14.10 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       35.08        24.13        38.17        34.75        13.12        32.02 
TCGA-22-5477 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-33-4533 
       44.22        79.20        18.84        30.08        62.86       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-33-6738 
       97.94       173.79       103.53        14.07        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3792 
       50.24        10.82         7.73         5.52         1.08         0.39 
TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 
        3.39        74.07        44.71        24.33        27.35        36.39 
TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       15.58        17.88        17.06        11.74        11.47        18.05 
TCGA-43-6143 TCGA-43-7657 TCGA-52-7809 TCGA-56-6545 TCGA-56-6546 TCGA-56-7582 
       12.36         1.58         5.42         2.04         1.02         0.85 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-58-8393 TCGA-58-A46K TCGA-58-A46N 
        1.12         0.99         0.99         0.66        34.36        17.72 
TCGA-60-2695 TCGA-60-2704 TCGA-60-2708 TCGA-60-2712 TCGA-60-2719 TCGA-60-2722 
       21.07        37.94        80.42         9.01        42.61        29.85 
TCGA-60-2723 TCGA-66-2742 TCGA-66-2758 TCGA-66-2763 TCGA-66-2770 TCGA-66-2777 
       35.90        21.07        20.98         0.99        23.01         2.01 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2793 TCGA-66-2800 TCGA-68-8251 
        1.94        40.01        22.98        10.06        49.05         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-7138 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       29.56        73.08        11.18         0.49        42.25        70.09 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8148 TCGA-85-7696 
       15.75        86.76        53.95        82.92         9.63         0.59 
TCGA-85-7699 TCGA-85-8350 TCGA-85-8353 TCGA-85-8354 TCGA-85-A4QR TCGA-85-A50M 
        0.03         1.97         1.78         2.01         0.82         0.62 
TCGA-85-A53L TCGA-90-7769 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-96-7545 
        0.43         0.59         2.70         3.48         5.26        44.15 
TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 
        2.73         7.33         7.30         1.18 

$`19Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        81.07        79.46        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34         1.61         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       27.16        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43       119.80         8.78        31.63        88.08        29.85 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 
        1.74        27.02        48.82        20.45        48.33         0.56 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5491 
       14.60         0.79        54.28        71.34        11.74        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4583 TCGA-33-4587 TCGA-33-4589 
       16.60         7.63        43.10       141.34        54.44        10.98 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
       51.78        32.68         9.04        14.07        22.95         4.96 
TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39        47.80        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 
       60.76         1.71         1.94        35.64        35.70        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       22.49        13.12        27.02        12.46        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        3.78         6.97        66.51         6.64         6.35         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        9.96        10.65        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
       17.79        30.31         8.75        27.45        28.93         0.10 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7730 
        0.99         0.43         0.99         1.45         1.32         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.03         1.35         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.56         0.53         1.51         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43         8.94        44.09        16.47 
TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
       36.59         3.58        12.23        10.22        96.82        92.71 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       21.70        49.48        66.51        41.39        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 
       35.34        48.49         3.16        32.28        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 TCGA-66-2753 
       11.77        16.96        43.10         2.01         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 
        2.01         0.92         0.99         0.99        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01         7.07        19.00         3.02 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
       19.00        12.03         3.98        12.00        24.95        25.97 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98         5.03        30.02        54.08         4.01 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-77-6844 TCGA-77-6845 
        2.73         6.64         6.94         8.02        75.09        23.28 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-8007 
       89.95        20.78       106.95         0.16        46.78         6.51 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB 
      104.09        27.39        55.33        35.90         0.33        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 
       23.44         0.36         0.79         1.12         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.78         1.81         2.20         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 
        0.89         0.13         0.10         0.46         0.46         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         1.55         2.93         3.29         8.02        10.88 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        4.01         2.27         2.86         0.16         4.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 
        6.18         6.90         8.42        13.58        10.13         1.15 
TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         3.02        56.61        50.86        37.32 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.03               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            173.79             141.34 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            17.965              9.530 
[1] "0.0 - 173.8 (18.0)" "0.0 - 141.3 (9.5)" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D35V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q GAIN MUTATED         0       17       43        1        15        18
  19Q GAIN WILD-TYPE       1       50       88        0        30        47
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19Q GAIN MUTATED           20          6        2
  19Q GAIN WILD-TYPE         33         14        3
D35V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED    24  82   8   8
  19Q GAIN WILD-TYPE  68 157  34  10
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1               24                 68
  T2               82                157
  T3                8                 34
  T4                8                 10
                    vv
clus                  N0  N1  N2  N3
  19Q GAIN MUTATED    77  31  14   0
  19Q GAIN WILD-TYPE 168  72  19   5
D35V5, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0               77                168
  N1               31                 72
  N2               14                 19
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q GAIN MUTATED   105   2  14
  19Q GAIN WILD-TYPE 228   3  33
D35V6, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  M0              105                228
  M1                2                  3
  MX               14                 33
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    33  89
  19Q GAIN WILD-TYPE  65 204
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     33   89
  19Q GAIN WILD-TYPE   65  204
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               33                 65
  MALE                 89                204
D35V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                       7
  19Q GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q GAIN MUTATED                                        0
  19Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q GAIN MUTATED                                         0
  19Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q GAIN MUTATED                                                           115
  19Q GAIN WILD-TYPE                                                         258
D35V9, multiclass
                                                             clus
vv                                                            19Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              115
                                                             clus
vv                                                            19Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                258
D35V10, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED     4 118
  19Q GAIN WILD-TYPE   8 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      4  118
  19Q GAIN WILD-TYPE    8  261
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 4                  8
  YES              118                261
D35V11, continuous
D35V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q GAIN MUTATED   101   2   0   5
  19Q GAIN WILD-TYPE 216   5   4  13
D35V13, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  R0              101                216
  R1                2                  5
  R2                0                  4
  RX                5                 13

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED   117  67
  20P GAIN WILD-TYPE 118  55
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               184                173 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                67                 55 
$`20P GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 
       24.92         3.02       119.54        46.88        60.89        34.78 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 
      122.43         9.30       119.80         8.78        88.08        29.85 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
       21.73        32.19        27.02        20.45        48.33        24.13 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5477 
       13.12        32.02         9.53        31.73        64.90        44.22 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 
       71.34        11.74        18.84        30.08        56.32         7.63 
TCGA-33-4538 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 
       97.94       103.53        54.44        10.98        26.99         2.63 
TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 
       61.61        28.96        32.84        50.24        10.82         7.73 
TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-4130 TCGA-37-4141 TCGA-37-5819 
        5.52         1.08         3.95         8.09         0.39         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 
       74.07        44.71        68.58         1.71        24.33        27.35 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 
       35.64        35.70        17.88        24.59        22.49        11.74 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       18.05        12.36         3.78         6.97         1.58        66.51 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 
        2.93         9.96        10.65        13.87         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-7222 
       17.79         5.42         8.75        28.93         2.04         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.99         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-A49D TCGA-56-A4ZJ TCGA-56-A4ZK 
        5.82         1.78         1.18         0.99         1.02         0.13 
TCGA-58-8386 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 TCGA-60-2698 
        0.03        44.09         0.66        34.36        21.07        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2715 
       96.82        37.94        21.70        80.42        41.39        35.34 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2726 TCGA-66-2737 
       42.61         3.16        29.85        35.90        11.77         2.01 
TCGA-66-2742 TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 TCGA-66-2770 
       21.07         0.99        25.02         0.99         7.07        23.01 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02         2.01        12.03         3.98        12.00        24.95 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 
       40.01        22.98        30.02        10.06        49.05         6.64 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        8.02         3.12        29.56        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-8007 
       89.95        20.78         0.49        42.25         0.16         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH 
       86.76        53.95        82.92         0.33        30.81        23.44 
TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-8049 
        0.79         0.59         1.61         1.15         1.25         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 
        0.53         1.41         0.43         0.36         1.45         1.97 
TCGA-85-8353 TCGA-85-8481 TCGA-85-8664 TCGA-85-8666 TCGA-85-A50M TCGA-85-A53L 
        1.78         0.66         0.10         0.46         0.62         0.43 
TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 
        2.93         0.59         8.02         3.48         5.26         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH 
        4.70        44.15         2.73        13.58         7.33         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HI 
        1.15        14.76         1.18        37.32 

$`20P GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       12.16        81.07        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 
        6.15         2.79        90.51        27.16        99.16        70.13 
TCGA-21-1078 TCGA-21-1079 TCGA-21-5782 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
       15.55        31.69        31.63        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 
       14.93         4.31        64.21         1.74        14.10        48.82 
TCGA-22-4593 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4613 
       35.08         0.56        38.17        34.75        19.30        11.77 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5489 
       63.52        14.60         0.79        54.28        79.20        62.86 
TCGA-22-5492 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 
       16.60       114.05        43.10       173.79       141.34        14.07 
TCGA-33-6737 TCGA-34-2604 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       19.76        31.50        31.23        51.78        32.68         9.04 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07        22.95         4.96         0.43         0.39         6.54 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 
        7.46         7.82         6.81        47.80        55.17        70.03 
TCGA-39-5027 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2581 
       60.76         1.94        36.39        15.58        17.06        13.12 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-8115 
       27.02        11.47        12.46        10.19         5.42         6.64 
TCGA-43-8116 TCGA-51-4080 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 
        6.35         0.39        30.31        27.45         0.10         1.02 
TCGA-56-7221 TCGA-56-8503 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        0.99         1.35         2.07         0.56         0.53         1.12 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.51         0.99         0.26        13.25        12.43         8.94 
TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2706 
       16.47        36.59        17.72         3.58        12.23        92.71 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 
       49.48        66.51         9.01        56.91        50.33        48.49 
TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2744 
       32.28        23.57        26.79        16.96        43.10         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2765 
        1.02         2.01         0.92         0.99        20.98         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2778 TCGA-66-2785 
        1.02         2.01         2.01        19.00        19.00         1.94 
TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 
       25.97         4.04        22.98         5.03        54.08         4.01 
TCGA-68-7755 TCGA-68-7757 TCGA-77-6843 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 
        2.73         6.94        73.08        70.09       106.95        46.78 
TCGA-77-7465 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       15.75       104.09        27.39         9.63        55.33        35.90 
TCGA-85-6560 TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 
        0.36         1.12         0.33         0.03         1.97         0.85 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 
        0.46         1.18         1.78         1.81         2.20         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A4QR 
        0.66         0.72         0.89         0.13         0.46         0.82 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
        0.79        24.89         1.55         3.29        10.88         2.70 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        4.01         2.27         2.86        39.88         6.18         6.90 
TCGA-98-7454 TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        8.42        10.13         3.02        56.61        50.86 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.03               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            122.43             173.79 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             11.54              12.16 
[1] "0.0 - 122.4 (11.5)" "0.0 - 173.8 (12.2)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
[1] "hr=" "1.2"
D36V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P GAIN MUTATED         1       32       68        1        17        37
  20P GAIN WILD-TYPE       0       35       63        0        28        28
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20P GAIN MUTATED           29          7        4
  20P GAIN WILD-TYPE         24         13        1
D36V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P GAIN MUTATED    44 121  24   9
  20P GAIN WILD-TYPE  48 118  18   9
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               44                 48
  T2              121                118
  T3               24                 18
  T4                9                  9
                    vv
clus                  N0  N1  N2  N3
  20P GAIN MUTATED   124  54  16   1
  20P GAIN WILD-TYPE 121  49  17   4
D36V5, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0              124                121
  N1               54                 49
  N2               16                 17
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20P GAIN MUTATED   170   4  21
  20P GAIN WILD-TYPE 163   1  26
D36V6, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  M0              170                163
  M1                4                  1
  MX               21                 26
D36V7, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    43 155
  20P GAIN WILD-TYPE  55 138
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     43  155
  20P GAIN WILD-TYPE   55  138
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               43                 55
  MALE                155                138
D36V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                       7
  20P GAIN WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P GAIN MUTATED                                        2
  20P GAIN WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P GAIN MUTATED                                         1
  20P GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P GAIN MUTATED                                                           188
  20P GAIN WILD-TYPE                                                         185
D36V9, multiclass
                                                             clus
vv                                                            20P GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              188
                                                             clus
vv                                                            20P GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                185
D36V10, binary
                    cls
clus                   0   1
  20P GAIN MUTATED     8 190
  20P GAIN WILD-TYPE   4 189
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      8  190
  20P GAIN WILD-TYPE    4  189
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 8                  4
  YES              190                189
D36V11, continuous
D36V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P GAIN MUTATED   163   3   3   8
  20P GAIN WILD-TYPE 154   4   1  10
D36V13, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  R0              163                154
  R1                3                  4
  R2                3                  1
  RX                8                 10

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED   116  62
  20Q GAIN WILD-TYPE 119  60
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               178                179 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                62                 60 
$`20Q GAIN MUTATED`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 TCGA-18-3414 TCGA-18-3417 
        4.47        79.46         4.80        11.34        13.02        24.92 
TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 
        3.02       119.54        46.88        60.89        34.78        31.69 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        9.30       119.80         8.78        29.85        21.73        10.82 
TCGA-21-A5DI TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       32.19        14.10        27.02        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4605 TCGA-22-5472 TCGA-22-5480 TCGA-22-5483 TCGA-22-5485 
       24.13        32.02        64.90        71.34        18.84        30.08 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 
       56.32         7.63        97.94       103.53        54.44        10.98 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-37-3783 
       31.23        50.24        10.82         7.73         5.52         3.95 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        0.39         8.09         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5028 TCGA-39-5029 TCGA-39-5031 TCGA-39-5036 
       74.07        44.71         1.71        24.33        27.35        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-5670 
       35.70        17.88        24.59        22.49        11.74        18.05 
TCGA-43-6143 TCGA-43-6771 TCGA-43-7656 TCGA-43-7658 TCGA-43-8118 TCGA-46-3768 
       12.36         5.42         6.97        66.51         2.93         9.96 
TCGA-46-6026 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 
       13.87         5.42        30.31         8.75        28.93         2.04 
TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7822 
        1.02         0.43         0.99         1.45         0.85         0.03 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8626 TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-58-8386 
        5.82         1.18         0.56         1.02         0.13         0.03 
TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 
        0.66        34.36        21.07        96.82        92.71        21.70 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2715 TCGA-60-2719 TCGA-60-2720 
       80.42        41.39        50.33        35.34        42.61         3.16 
TCGA-60-2722 TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 
       29.85        11.77         2.01        21.07         0.99         0.99 
TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2769 TCGA-66-2770 TCGA-66-2777 
        0.99        25.02         0.99         7.07        23.01         2.01 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
       12.03         3.98        12.00         1.94        40.01        22.98 
TCGA-66-2793 TCGA-66-2800 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6845 
       10.06        49.05         6.64         8.02         3.12        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7337 TCGA-77-7338 
       11.18        89.95        20.78         0.49       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8148 
       46.78        15.75         6.51        86.76        82.92         9.63 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7843 
       30.81        23.44         0.36         0.79         0.59         1.15 
TCGA-85-7844 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8277 
        1.25         1.97         0.53         1.41         0.43         0.36 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8481 
        1.45         1.97         1.81         1.78         2.01         0.66 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L 
        0.13         0.10         0.46         0.82         0.62         0.43 
TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 
        2.93         0.59         8.02         3.48         5.26         0.16 
TCGA-94-7943 TCGA-96-7545 TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 
        4.70        44.15         2.73         7.33         7.30         1.15 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        50.86        37.32 

$`20Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 
       12.16        81.07        46.52        59.51        28.34         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 
       43.76         6.15         2.79        90.51        27.16        99.16 
TCGA-21-1075 TCGA-21-1078 TCGA-21-1080 TCGA-21-5782 TCGA-21-5783 TCGA-22-0940 
       70.13        15.55       122.43        31.63        88.08        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 
        7.33        14.93         4.31        64.21         1.74        48.82 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 
        0.56        38.17        34.75        13.12        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.73        63.52        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 
       54.28        79.20        11.74        62.86        16.60       114.05 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 TCGA-34-5232 
       43.10       173.79       141.34        14.07        19.76        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 
       32.68         9.04        14.07        22.95         4.96         1.08 
TCGA-37-3789 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-39-5021 TCGA-39-5022 
        0.43         6.54         7.46         7.82        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 
       70.03        60.76         1.94        36.39        15.58        17.06 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 
       13.12        27.02        11.47        12.46        10.19         3.78 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
        1.58         6.64         6.35        10.65         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-5897 TCGA-56-7221 TCGA-56-7580 
       29.95        17.79        27.45         0.10         0.99         1.32 
TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-8629 
        0.20         1.35         1.78         2.07         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        0.99         1.51         0.99         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 
        8.94        44.09        16.47        36.59        17.72         3.58 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       12.23        10.22        37.94        49.48        66.51         9.01 
TCGA-60-2713 TCGA-60-2716 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       56.91        48.49        32.28        35.90        23.57        26.79 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2758 
       16.96        43.10         1.02         2.01         0.92        20.98 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         2.01         2.01        19.00         3.02 
TCGA-66-2778 TCGA-66-2783 TCGA-66-2786 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
       19.00        24.95        25.97         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 TCGA-77-6842 
       30.02        54.08         4.01         2.73         6.94        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7142 TCGA-77-7335 TCGA-77-8009 TCGA-77-8139 
       73.08        75.09        42.25        70.09        53.95       104.09 
TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-85-6798 TCGA-85-7697 
       27.39        55.33        35.90         0.33         1.12         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8048 TCGA-85-8071 TCGA-85-8072 
        1.61         0.03         1.97         0.85         0.46         1.18 
TCGA-85-8288 TCGA-85-8352 TCGA-85-8355 TCGA-85-8479 TCGA-85-8580 TCGA-85-A4CL 
        1.78         2.20         0.66         0.72         0.89         0.46 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
        0.79        24.89         1.55         3.29        10.88         2.70 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        4.01         2.27         2.86        39.88         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A524 TCGA-NC-A5HE 
        8.42        13.58        10.13        14.76        56.61 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.03               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            119.80             173.79 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             10.44              13.12 
[1] "0.0 - 119.8 (10.4)" "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
[1] "hr=" "1.2"
D37V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20Q GAIN MUTATED         1       32       63        0        19        33
  20Q GAIN WILD-TYPE       0       35       68        1        26        32
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20Q GAIN MUTATED           30          8        4
  20Q GAIN WILD-TYPE         23         12        1
D37V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q GAIN MUTATED    43 114  25  10
  20Q GAIN WILD-TYPE  49 125  17   8
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               43                 49
  T2              114                125
  T3               25                 17
  T4               10                  8
                    vv
clus                  N0  N1  N2  N3
  20Q GAIN MUTATED   121  53  15   0
  20Q GAIN WILD-TYPE 124  50  18   5
D37V5, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0              121                124
  N1               53                 50
  N2               15                 18
  N3                0                  5
                    vv
clus                  M0  M1  MX
  20Q GAIN MUTATED   164   4  22
  20Q GAIN WILD-TYPE 169   1  25
D37V6, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  M0              164                169
  M1                4                  1
  MX               22                 25
D37V7, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    40 152
  20Q GAIN WILD-TYPE  58 141
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     40  152
  20Q GAIN WILD-TYPE   58  141
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               40                 58
  MALE                152                141
D37V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                       8
  20Q GAIN WILD-TYPE                                     4
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q GAIN MUTATED                                        2
  20Q GAIN WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q GAIN MUTATED                                         1
  20Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q GAIN MUTATED                                                           181
  20Q GAIN WILD-TYPE                                                         192
D37V9, multiclass
                                                             clus
vv                                                            20Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              181
                                                             clus
vv                                                            20Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                192
D37V10, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED     7 185
  20Q GAIN WILD-TYPE   5 194
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      7  185
  20Q GAIN WILD-TYPE    5  194
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 7                  5
  YES              185                194
D37V11, continuous
D37V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q GAIN MUTATED   158   4   1   8
  20Q GAIN WILD-TYPE 159   3   3  10
D37V13, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  R0              158                159
  R1                4                  3
  R2                1                  3
  RX                8                 10

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    25  12
  21Q GAIN WILD-TYPE 210 110
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                37                320 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                12                110 
$`21Q GAIN MUTATED`
TCGA-18-3410 TCGA-21-1077 TCGA-21-1081 TCGA-21-A5DI TCGA-22-1011 TCGA-22-4595 
        4.80        34.78         9.30        32.19         1.74        24.13 
TCGA-33-4566 TCGA-33-4583 TCGA-33-4587 TCGA-34-2596 TCGA-34-2605 TCGA-34-5240 
      173.79       141.34        54.44         2.63        28.96         7.73 
TCGA-34-5928 TCGA-39-5028 TCGA-43-6143 TCGA-43-6647 TCGA-52-7811 TCGA-56-7221 
        5.52         1.71        12.36        12.46         8.75         0.99 
TCGA-56-8504 TCGA-56-A4BY TCGA-60-2706 TCGA-60-2714 TCGA-60-2724 TCGA-66-2756 
        5.82         0.99        92.71        50.33        23.57         0.99 
TCGA-66-2767 TCGA-66-2770 TCGA-66-2783 TCGA-77-6844 TCGA-77-7139 TCGA-77-8130 
        2.01        23.01        24.95        75.09        89.95        82.92 
TCGA-77-8139 TCGA-85-7844 TCGA-85-7950 TCGA-85-8353 TCGA-92-7340 TCGA-96-7545 
      104.09         1.25         1.97         1.78         2.70        44.15 
TCGA-NC-A5HI 
       37.32 

$`21Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        60.89        15.55        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
      122.43       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.73        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       48.33         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       14.60        44.22         0.79        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4586 
        7.63       114.05        97.94        43.10       103.53        14.07 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       10.98        19.76        26.99        61.61        31.50        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.39         6.54         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        0.39         3.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       36.39        15.58        35.64        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       24.59        22.49        13.12        27.02        11.74        11.47 
TCGA-43-5670 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       18.05        10.19         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 
       66.51         6.64         6.35         2.93         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.87         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       30.31        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        0.43         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        0.03         1.35         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK 
        0.53         1.12         0.99         1.51         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       16.47         0.66        34.36        36.59        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 
        3.58        12.23        10.22        96.82        37.94        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       35.90        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
       20.98        25.02         0.99         2.01         1.02         2.01 
TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        7.07        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
        3.98        12.00         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        3.12        29.56        73.08        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8144 TCGA-77-8148 
       15.75         6.51        86.76        53.95        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       55.33        35.90         0.33        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.15         0.85         1.97         0.53         1.41         0.46 
TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        1.18         0.43         0.36         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        1.81         2.20         2.01         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.89         0.13         0.10         0.46         0.46         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.62         0.79         0.43        24.89         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 
        0.59         3.29         8.02        10.88         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.18         6.90         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30         1.15        14.76         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG 
       56.61        50.86 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.99               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            173.79             122.43 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            12.460             11.605 
[1] "1.0 - 173.8 (12.5)" "0.0 - 122.4 (11.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
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        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
[1] "hr=" "1.6"
D38V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q GAIN MUTATED         1        3       11        0         1        11
  21Q GAIN WILD-TYPE       0       64      120        1        44        54
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  21Q GAIN MUTATED            8          4        0
  21Q GAIN WILD-TYPE         45         16        5
D38V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED     4  26   7   3
  21Q GAIN WILD-TYPE  88 213  35  15
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1                4                 88
  T2               26                213
  T3                7                 35
  T4                3                 15
                    vv
clus                  N0  N1  N2  N3
  21Q GAIN MUTATED    19  17   2   2
  21Q GAIN WILD-TYPE 226  86  31   3
D38V5, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0               19                226
  N1               17                 86
  N2                2                 31
  N3                2                  3
                    vv
clus                  M0  M1  MX
  21Q GAIN MUTATED    32   0   6
  21Q GAIN WILD-TYPE 301   5  41
D38V6, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  M0               32                301
  M1                0                  5
  MX                6                 41
D38V7, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     7  33
  21Q GAIN WILD-TYPE  91 260
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      7   33
  21Q GAIN WILD-TYPE   91  260
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE                7                 91
  MALE                 33                260
D38V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                       2
  21Q GAIN WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q GAIN MUTATED                                        0
  21Q GAIN WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q GAIN MUTATED                                         1
  21Q GAIN WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q GAIN MUTATED                                                            37
  21Q GAIN WILD-TYPE                                                         336
D38V9, multiclass
                                                             clus
vv                                                            21Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               37
                                                             clus
vv                                                            21Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                336
D38V10, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     3  37
  21Q GAIN WILD-TYPE   9 342
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      3   37
  21Q GAIN WILD-TYPE    9  342
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 3                  9
  YES               37                342
D38V11, continuous
D38V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q GAIN MUTATED    28   1   1   5
  21Q GAIN WILD-TYPE 289   6   3  13
D38V13, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  R0               28                289
  R1                1                  6
  R2                1                  3
  RX                5                 13

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED   106  51
  22Q GAIN WILD-TYPE 129  71
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
               157                200 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                51                 71 
$`22Q GAIN MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-21-1072 
       81.07        79.46        46.52        11.34        13.02        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 
       70.13        60.89        34.78        31.69       119.80         8.78 
TCGA-21-5784 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 
       29.85         4.31         1.74        14.10        20.45        35.08 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-5477 TCGA-22-5479 
       24.13        34.75        13.12        32.02        44.22        54.28 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4586 
       79.20        11.74        56.32        16.60         7.63        14.07 
TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       10.98        26.99         2.63        61.61        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       31.23        50.24         9.04        10.82         7.73        14.07 
TCGA-37-4130 TCGA-37-4133 TCGA-39-5019 TCGA-39-5021 TCGA-39-5031 TCGA-39-5034 
        8.09         7.82        44.71        68.58        27.35        36.39 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       35.64        35.70        17.88        27.02        11.74        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-7657 TCGA-43-8118 
       18.05        12.36        12.46        10.19         1.58         2.93 
TCGA-46-6025 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 
       10.65         5.42        30.31         8.75        28.93         0.10 
TCGA-56-6545 TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 
        2.04         0.99         1.45         1.32         0.85         0.20 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8626 TCGA-56-8629 
        0.03         1.35         5.82         1.78         0.56         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.51         1.02         0.26         0.03        13.25 
TCGA-58-8390 TCGA-58-A46N TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        8.94        17.72        96.82        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 
       80.42        41.39        50.33        42.61         3.16        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       35.90        26.79        11.77        43.10         2.01        21.07 
TCGA-66-2755 TCGA-66-2758 TCGA-66-2763 TCGA-66-2769 TCGA-66-2773 TCGA-66-2777 
        0.92        20.98         0.99         7.07         3.02         2.01 
TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2792 TCGA-66-2794 
        3.98        24.95         1.94        22.98        30.02        54.08 
TCGA-66-2800 TCGA-77-6842 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       49.05        29.56        23.28        89.95        20.78         0.49 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 
        0.16        46.78        15.75         6.51        86.76        82.92 
TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-7696 
       55.33         0.33        30.81        23.44         0.79         0.59 
TCGA-85-7698 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 TCGA-85-8350 TCGA-85-8354 
        1.61         0.53         1.41         0.43         1.97         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-A4QR TCGA-85-A50M TCGA-90-7767 
        0.66         0.66         0.89         0.82         0.62         2.93 
TCGA-90-7769 TCGA-92-7341 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 
        0.59         3.48         2.86         4.70        44.15         6.18 
TCGA-96-8170 TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 TCGA-NC-A5HG 
        6.90         2.73         7.33         7.30         1.18        50.86 
TCGA-NC-A5HI 
       37.32 

$`22Q GAIN WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
       12.16         4.47         4.80        59.51        28.34        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
        1.61        43.76         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       27.16       119.54        46.88        15.55       122.43         9.30 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        21.73        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 TCGA-22-4594 
        7.33        14.93        64.21        27.02        48.82        48.33 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
        0.56        38.17        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5480 TCGA-22-5483 
       64.90        63.52        14.60         0.79        71.34        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       30.08        62.86       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-34-2604 TCGA-34-5232 
      103.53       141.34        54.44        19.76        31.50        51.78 
TCGA-34-5234 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       32.68        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        0.43         0.39         6.54         7.46         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
        3.39        47.80        74.07        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 
        1.71        24.33         1.94        15.58        17.06        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 
       22.49        13.12         5.42         3.78         6.97        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.64         6.35         9.96        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7812 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 
       29.95        17.79        27.45         1.02         0.43         0.99 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8628 TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8388 
        1.18         2.07         0.53         0.99         0.13        12.43 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 
       44.09        16.47         0.66        34.36        36.59        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
        3.58        12.23        10.22        49.48        66.51         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2724 TCGA-66-2727 
       56.91        35.34        48.49        32.28        23.57        16.96 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 
        0.99         1.02         2.01         0.99         0.99        25.02 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 
        2.01         1.02         2.01         2.01        23.01        19.00 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 TCGA-66-2787 TCGA-66-2789 
       19.00        12.03        12.00        25.97        40.01         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 
       22.98         5.03        10.06         4.01         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-7138 
        6.94         8.02         3.12        73.08        75.09        11.18 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-8009 TCGA-77-8139 TCGA-77-8144 
       42.25        70.09       106.95        53.95       104.09        27.39 
TCGA-77-8148 TCGA-77-8154 TCGA-85-6560 TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 
        9.63        35.90         0.36         1.12         0.33         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 
        1.15         1.25         1.97         0.85         1.97         0.46 
TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 
        1.18         0.36         1.45         1.78         1.81         2.20 
TCGA-85-8353 TCGA-85-8479 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        1.78         0.72         0.13         0.10         0.46         0.46 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED 
        0.79         0.43        24.89         1.55         3.29         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
       10.88         2.70         4.01         5.26         2.27         0.16 
TCGA-96-7544 TCGA-98-7454 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
       39.88         8.42        13.58        10.13         1.15        14.76 
TCGA-MF-A522 TCGA-NC-A5HE 
        3.02        56.61 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.03               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            119.80             173.79 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
             12.36              10.85 
[1] "0.0 - 119.8 (12.4)" "0.0 - 173.8 (10.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
[1] "hr=" "1.1"
D39V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q GAIN MUTATED         0       24       67        0        21        34
  22Q GAIN WILD-TYPE       1       43       64        1        24        31
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  22Q GAIN MUTATED           15          8        3
  22Q GAIN WILD-TYPE         38         12        2
D39V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q GAIN MUTATED    36 116  13   9
  22Q GAIN WILD-TYPE  56 123  29   9
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1               36                 56
  T2              116                123
  T3               13                 29
  T4                9                  9
                    vv
clus                  N0  N1  N2  N3
  22Q GAIN MUTATED   115  42  12   1
  22Q GAIN WILD-TYPE 130  61  21   4
D39V5, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0              115                130
  N1               42                 61
  N2               12                 21
  N3                1                  4
                    vv
clus                  M0  M1  MX
  22Q GAIN MUTATED   148   3  21
  22Q GAIN WILD-TYPE 185   2  26
D39V6, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  M0              148                185
  M1                3                  2
  MX               21                 26
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    42 132
  22Q GAIN WILD-TYPE  56 161
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     42  132
  22Q GAIN WILD-TYPE   56  161
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               42                 56
  MALE                132                161
D39V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                       6
  22Q GAIN WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q GAIN MUTATED                                        1
  22Q GAIN WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q GAIN MUTATED                                         0
  22Q GAIN WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q GAIN MUTATED                                                           167
  22Q GAIN WILD-TYPE                                                         206
D39V9, multiclass
                                                             clus
vv                                                            22Q GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              167
                                                             clus
vv                                                            22Q GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                206
D39V10, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED     4 170
  22Q GAIN WILD-TYPE   8 209
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      4  170
  22Q GAIN WILD-TYPE    8  209
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 4                  8
  YES              170                209
D39V11, continuous
D39V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q GAIN MUTATED   145   3   1   4
  22Q GAIN WILD-TYPE 172   4   3  14
D39V13, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  R0              145                172
  R1                3                  4
  R2                1                  3
  RX                4                 14

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    39  20
  XQ GAIN WILD-TYPE 196 102
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               59               298 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               20               102 
$`XQ GAIN MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3417 TCGA-18-3421 TCGA-18-4083 TCGA-21-1081 
       12.16         4.47        24.92        43.76         6.15         9.30 
TCGA-21-5786 TCGA-22-1012 TCGA-22-4593 TCGA-22-4595 TCGA-22-5483 TCGA-33-4566 
       21.73        14.10        35.08        24.13        18.84       173.79 
TCGA-34-2596 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-37-5819 TCGA-39-5019 
        2.63         7.73        22.95         5.52         3.39        44.71 
TCGA-43-3920 TCGA-43-5670 TCGA-43-7657 TCGA-51-4079 TCGA-56-7223 TCGA-56-7730 
       11.74        18.05         1.58         0.39         0.99         0.20 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8629 TCGA-58-8386 TCGA-58-A46N TCGA-60-2695 
        5.82         1.18         1.12         0.03        17.72        21.07 
TCGA-60-2703 TCGA-60-2711 TCGA-60-2719 TCGA-60-2723 TCGA-60-2724 TCGA-66-2756 
       96.82        41.39        42.61        35.90        23.57         0.99 
TCGA-66-2758 TCGA-66-2766 TCGA-66-2769 TCGA-66-2781 TCGA-66-2792 TCGA-66-2793 
       20.98         1.02         7.07         3.98        30.02        10.06 
TCGA-77-6842 TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7465 TCGA-77-8009 
       29.56        11.18        20.78        70.09        15.75        53.95 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6561 TCGA-85-8070 TCGA-85-8072 TCGA-85-8350 
        0.33         0.36         0.79         1.41         1.18         1.97 
TCGA-85-8354 TCGA-85-A50M TCGA-92-7341 TCGA-94-7557 TCGA-J1-A4AH 
        2.01         0.62         3.48         0.16         7.30 

$`XQ GAIN WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       81.07        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51        28.34         1.61         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       27.16       119.54        46.88        99.16        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       34.78        15.55        31.69       122.43       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        29.85        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 
        7.33        14.93         4.31        64.21         1.74        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       48.82        20.45        48.33         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       71.34        79.20        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       16.60         7.63       114.05        97.94        43.10       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5241 TCGA-34-5929 
       51.78        32.68         9.04        10.82        14.07         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         0.39        47.80        74.07 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       17.88        17.06        24.59        22.49        13.12        27.02 
TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.47        12.36        12.46        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        6.97        66.51         6.64         6.35         2.93         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65        13.87         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        1.02         0.99         0.43         1.45         1.32         0.85 
TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        0.03         1.35         1.78         2.07         0.56         0.53 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43         8.94        44.09        16.47         0.66 
TCGA-58-A46K TCGA-58-A46L TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
       34.36        36.59         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       92.71        21.70        80.42        49.48        66.51         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 
       56.91        50.33        35.34        48.49         3.16        32.28 
TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       29.85        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 
       25.02         0.99         2.01         2.01         2.01        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 
       19.00         3.02         2.01        19.00        12.03        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 
       22.98         5.03        54.08         4.01        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 
        6.64         6.94         8.02         3.12        73.08        75.09 
TCGA-77-6845 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7337 TCGA-77-7338 
       23.28        89.95         0.49        42.25       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
       46.78         6.51        86.76        82.92       104.09        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6798 
        9.63        55.33        35.90        30.81        23.44         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.59         0.33         1.61         0.03         1.15         1.25 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 
        1.97         0.85         1.97         0.53         0.46         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        0.36         1.45         1.78         1.81         2.20         1.78 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.46         0.82         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        1.55         2.93         0.59         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 
        2.70         4.01         5.26         2.27         2.86         4.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
       39.88        44.15         6.18         6.90         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
       13.58         7.33        10.13         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.03              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           173.79            141.34 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
            9.300            12.015 
[1] "0.0 - 173.8 (9.3)"  "0.0 - 141.3 (12.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-NC-A5HI 
"XQ GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ GAIN MUTATED         0        6       22        0        11        11
  XQ GAIN WILD-TYPE       1       61      109        1        34        54
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  XQ GAIN MUTATED            6          4        2
  XQ GAIN WILD-TYPE         47         16        3
D40V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN MUTATED     8  44   6   4
  XQ GAIN WILD-TYPE  84 195  36  14
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1               8                84
  T2              44               195
  T3               6                36
  T4               4                14
                   vv
clus                 N0  N1  N2  N3
  XQ GAIN MUTATED    39  18   4   0
  XQ GAIN WILD-TYPE 206  85  29   5
D40V5, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0              39               206
  N1              18                85
  N2               4                29
  N3               0                 5
                   vv
clus                 M0  M1  MX
  XQ GAIN MUTATED    51   2   7
  XQ GAIN WILD-TYPE 282   3  40
D40V6, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  M0              51               282
  M1               2                 3
  MX               7                40
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    13  49
  XQ GAIN WILD-TYPE  85 244
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     13   49
  XQ GAIN WILD-TYPE   85  244
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE              13                85
  MALE                49               244
D40V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                       3
  XQ GAIN WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ GAIN MUTATED                                        1
  XQ GAIN WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ GAIN MUTATED                                         0
  XQ GAIN WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ GAIN MUTATED                                                            58
  XQ GAIN WILD-TYPE                                                         315
D40V9, multiclass
                                                             clus
vv                                                            XQ GAIN MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              58
                                                             clus
vv                                                            XQ GAIN WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               315
D40V10, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     1  61
  XQ GAIN WILD-TYPE  11 318
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      1   61
  XQ GAIN WILD-TYPE   11  318
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                1                11
  YES              61               318
D40V11, continuous
D40V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ GAIN MUTATED    52   1   0   1
  XQ GAIN WILD-TYPE 265   6   4  17
D40V13, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  R0              52               265
  R1               1                 6
  R2               0                 4
  RX               1                17

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    67  33
  1P LOSS WILD-TYPE 168  89
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
              100               257 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               33                89 
$`1P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3415 TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 
       12.16        81.07        59.51         3.02        46.88        99.16 
TCGA-21-1075 TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 TCGA-22-1017 TCGA-22-4593 
       70.13        19.99         7.33        14.10        48.82        35.08 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4609 TCGA-22-5471 TCGA-22-5473 
        0.56        38.17        13.12         9.53        31.73        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5491 TCGA-33-4538 TCGA-33-4583 
       14.60        44.22        54.28        56.32        97.94       141.34 
TCGA-33-4586 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-37-4129 TCGA-37-5819 
       14.07         2.63        61.61        28.96         6.54         3.39 
TCGA-39-5016 TCGA-39-5027 TCGA-39-5029 TCGA-39-5034 TCGA-43-2581 TCGA-43-3394 
       74.07        60.76        24.33        36.39        13.12        27.02 
TCGA-43-7657 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        1.58         9.96        13.87         0.39         0.39        29.95 
TCGA-52-7622 TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 TCGA-56-7580 TCGA-56-7730 
       17.79         8.75        28.93         2.04         1.32         0.20 
TCGA-56-7822 TCGA-56-A49D TCGA-56-A4BX TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L 
        0.03         0.99         1.51        16.47         0.66        36.59 
TCGA-60-2698 TCGA-60-2706 TCGA-60-2707 TCGA-60-2714 TCGA-60-2719 TCGA-66-2737 
       10.22        92.71        21.70        50.33        42.61         2.01 
TCGA-66-2758 TCGA-66-2767 TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2781 
       20.98         2.01        23.01         3.02         2.01         3.98 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       40.01         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7757 TCGA-77-7139 TCGA-77-7337 TCGA-77-8009 
       49.05         2.73         6.94        89.95       106.95        53.95 
TCGA-77-8148 TCGA-85-6561 TCGA-85-7696 TCGA-85-7698 TCGA-85-7843 TCGA-85-8277 
        9.63         0.79         0.59         1.61         1.15         0.36 
TCGA-85-8287 TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 TCGA-85-A53L TCGA-90-A4EE 
        1.45         2.20         1.78         0.89         0.43        10.88 
TCGA-92-7341 TCGA-96-7544 TCGA-96-7545 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A524 
        3.48        39.88        44.15        13.58        10.13        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.18         3.02        56.61        50.86 

$`1P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
        4.47        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       90.51        27.16       119.54        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1000 
       88.08        29.85        21.73        10.82        32.19        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 
        4.31        64.21         1.74        27.02        20.45        48.33 
TCGA-22-4595 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5472 
       24.13        34.75        32.02        19.30        11.77        64.90 
TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
        0.79        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 
       62.86        16.60         7.63       114.05        43.10       173.79 
TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 
      103.53        54.44        10.98        19.76        26.99        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.43         0.39         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 
        7.82         6.81         0.39        47.80        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       55.17        70.03         1.71         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       35.64        35.70        17.88        17.06        24.59        22.49 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.74        11.47        18.05        12.36        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        5.42         3.78         6.97        66.51         6.64         6.35 
TCGA-43-8118 TCGA-46-6025 TCGA-52-7809 TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 
        2.93        10.65         5.42        30.31        27.45         0.10 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 
        1.02         0.99         0.43         0.99         1.45         0.85 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.53         1.12         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-A46K 
        0.03        13.25        12.43         8.94        44.09        34.36 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       17.72        21.07         3.58        12.23        96.82        37.94 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 
       80.42        49.48        66.51        41.39         9.01        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       35.34        48.49         3.16        32.28        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2742 
       23.57        26.79        11.77        16.96        43.10        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
       25.02         0.99         2.01         1.02         2.01         7.07 
TCGA-66-2771 TCGA-66-2778 TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        19.00        12.03        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-68-7756 TCGA-68-8250 
       25.97        22.98         4.04        22.98         6.64         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        3.12        29.56        73.08        75.09        23.28        11.18 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 
       20.78         0.49        42.25        70.09         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
       15.75         6.51        86.76        82.92       104.09        27.39 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       55.33        35.90         0.33        30.81        23.44         0.36 
TCGA-85-6798 TCGA-85-7697 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        1.12         0.33         0.03         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 
        1.78         1.97         1.81         2.01         0.66         0.72 
TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.66         0.13         0.10         0.46         0.46         0.82 
TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.62         0.79        24.89         1.55         2.93         0.59 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29         8.02         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        2.86         0.16         4.70         6.18         6.90         8.42 
TCGA-98-8020 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-NC-A5HI 
        2.73         7.33         7.30         1.15        37.32 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.03              0.03 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           141.34            173.79 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           13.725            11.180 
[1] "0.0 - 141.3 (13.7)" "0.0 - 173.8 (11.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-NC-A5HI 
"1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-NC-A5HI 
"1P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-NC-A5HI 
"1P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D41V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1P LOSS MUTATED         0       17       35        0        14        18
  1P LOSS WILD-TYPE       1       50       96        1        31        47
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1P LOSS MUTATED           17          8        0
  1P LOSS WILD-TYPE         36         12        5
D41V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED    27  61  15   6
  1P LOSS WILD-TYPE  65 178  27  12
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1              27                65
  T2              61               178
  T3              15                27
  T4               6                12
                   vv
clus                 N0  N1  N2  N3
  1P LOSS MUTATED    63  35   9   2
  1P LOSS WILD-TYPE 182  68  24   3
D41V5, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0              63               182
  N1              35                68
  N2               9                24
  N3               2                 3
                   vv
clus                 M0  M1  MX
  1P LOSS MUTATED    97   0  10
  1P LOSS WILD-TYPE 236   5  37
D41V6, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  M0              97               236
  M1               0                 5
  MX              10                37
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    20  89
  1P LOSS WILD-TYPE  78 204
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     20   89
  1P LOSS WILD-TYPE   78  204
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE              20                78
  MALE                89               204
D41V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                       4
  1P LOSS WILD-TYPE                                     8
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1P LOSS MUTATED                                        1
  1P LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1P LOSS MUTATED                                         0
  1P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P LOSS MUTATED                                                           104
  1P LOSS WILD-TYPE                                                         269
D41V9, multiclass
                                                             clus
vv                                                            1P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             104
                                                             clus
vv                                                            1P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               269
D41V10, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     4 105
  1P LOSS WILD-TYPE   8 274
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      4  105
  1P LOSS WILD-TYPE    8  274
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                4                 8
  YES             105               274
D41V11, continuous
D41V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P LOSS MUTATED    92   1   2   4
  1P LOSS WILD-TYPE 225   6   2  14
D41V13, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  R0              92               225
  R1               1                 6
  R2               2                 2
  RX               4                14

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED    19  12
  1Q LOSS WILD-TYPE 216 110
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               31               326 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               12               110 
$`1Q LOSS MUTATED`
TCGA-21-1075 TCGA-22-4593 TCGA-22-4604 TCGA-22-5471 TCGA-22-5477 TCGA-22-5491 
       70.13        35.08        13.12        31.73        44.22        56.32 
TCGA-34-2605 TCGA-37-4129 TCGA-39-5029 TCGA-39-5034 TCGA-43-3394 TCGA-46-3768 
       28.96         6.54        24.33        36.39        27.02         9.96 
TCGA-46-6026 TCGA-51-4079 TCGA-56-7730 TCGA-56-7822 TCGA-56-A49D TCGA-58-8392 
       13.87         0.39         0.20         0.03         0.99        16.47 
TCGA-60-2714 TCGA-60-2719 TCGA-66-2791 TCGA-66-2793 TCGA-68-7755 TCGA-77-7139 
       50.33        42.61         5.03        10.06         2.73        89.95 
TCGA-85-7843 TCGA-85-8287 TCGA-85-A53L TCGA-96-7544 TCGA-96-7545 TCGA-98-8021 
        1.15         1.45         0.43        39.88        44.15        13.58 
TCGA-98-8023 
       10.13 

$`1Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        99.16        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.08        29.85        21.73        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        48.33        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        34.75        32.02        19.30         9.53        11.77 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 
       79.20        11.74        18.84        30.08        62.86        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      141.34        14.07        54.44        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        61.61        31.50        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.39         8.09         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        3.39        47.80        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       70.03        60.76         1.71         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       35.64        35.70        17.88        17.06        24.59        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       13.12        11.74        11.47        18.05        12.36        12.46 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       10.19         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-6025 TCGA-51-4080 TCGA-51-4081 
        6.64         6.35         2.93        10.65         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       17.79         5.42        30.31         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.45         1.32         0.85         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        1.18         2.07         0.56         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
       12.43         8.94        44.09         0.66        34.36        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 
       37.94        92.71        21.70        80.42        49.48        66.51 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2720 
       41.39         9.01        56.91        35.34        48.49         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04        22.98        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
       49.05         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 
       73.08        75.09        23.28        11.18        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       42.25        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
        6.51        86.76        53.95        82.92       104.09        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH 
        9.63        55.33        35.90         0.33        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
        0.36         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        0.03         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 
        1.41         0.46         1.18         0.43         0.36         1.78 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66         0.89         0.13         0.10         0.46 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.46         0.82         0.62         0.79        24.89         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        2.93         0.59         3.29         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 
        4.70         6.18         6.90         8.42         2.73         7.33 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15        14.76         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.03              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            89.95            173.79 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           13.870            11.405 
[1] "0.0 - 90.0 (13.9)"  "0.0 - 173.8 (11.4)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"1Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D42V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  1Q LOSS MUTATED         0        6        7        0         8         8
  1Q LOSS WILD-TYPE       1       61      124        1        37        57
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  1Q LOSS MUTATED            7          3        0
  1Q LOSS WILD-TYPE         46         17        5
D42V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED    11  20   6   2
  1Q LOSS WILD-TYPE  81 219  36  16
D42V4, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1              11                81
  T2              20               219
  T3               6                36
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  1Q LOSS MUTATED    19  16   3   1
  1Q LOSS WILD-TYPE 226  87  30   4
D42V5, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0              19               226
  N1              16                87
  N2               3                30
  N3               1                 4
                   vv
clus                 M0  M1  MX
  1Q LOSS MUTATED    35   0   3
  1Q LOSS WILD-TYPE 298   5  44
D42V6, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  M0              35               298
  M1               0                 5
  MX               3                44
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     8  31
  1Q LOSS WILD-TYPE  90 262
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      8   31
  1Q LOSS WILD-TYPE   90  262
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE               8                90
  MALE                31               262
D42V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                       0
  1Q LOSS WILD-TYPE                                    12
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  1Q LOSS MUTATED                                        0
  1Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  1Q LOSS MUTATED                                         0
  1Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q LOSS MUTATED                                                            39
  1Q LOSS WILD-TYPE                                                         334
D42V9, multiclass
                                                             clus
vv                                                            1Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              39
                                                             clus
vv                                                            1Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               334
D42V10, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     3  36
  1Q LOSS WILD-TYPE   9 343
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      3   36
  1Q LOSS WILD-TYPE    9  343
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                3                 9
  YES              36               343
D42V11, continuous
D42V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q LOSS MUTATED    32   1   2   0
  1Q LOSS WILD-TYPE 285   6   2  18
D42V13, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  R0              32               285
  R1               1                 6
  R2               2                 2
  RX               0                18

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED     7   7
  2P LOSS WILD-TYPE 228 115
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               14               343 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                7               115 
$`2P LOSS MUTATED`
TCGA-21-5787 TCGA-22-4594 TCGA-22-5481 TCGA-33-4533 TCGA-37-4129 TCGA-37-5819 
       10.82        48.33        79.20       114.05         6.54         3.39 
TCGA-39-5028 TCGA-39-5029 TCGA-43-2578 TCGA-51-4081 TCGA-56-1622 TCGA-66-2756 
        1.71        24.33        22.49        29.95        28.93         0.99 
TCGA-66-2763 TCGA-85-8352 
        0.99         2.20 

$`2P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
      119.54        46.88        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       15.55        31.69       122.43         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        29.85        21.73        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        35.08        24.13         0.56 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       38.17        34.75        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.73        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
        0.79        54.28        71.34        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60         7.63        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
      173.79       103.53       141.34        14.07        54.44        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.43         0.39         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        7.82         6.81         0.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17        70.03        60.76         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 
       36.39        15.58        35.64        35.70        17.88        17.06 
TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       24.59        13.12        27.02        11.74        11.47        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       12.36        12.46        10.19         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        1.58        66.51         6.64         6.35         2.93         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
       10.65        13.87         0.39         0.39        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       30.31         8.75        27.45         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.20         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K 
       12.43         8.94        44.09        16.47         0.66        34.36 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.51        41.39         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       48.49        42.61         3.16        32.28        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 
       40.01        22.98         4.04        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       10.06        54.08         4.01        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.09       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
       86.76        53.95        82.92       104.09        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
       55.33        35.90         0.33        30.81        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.79         1.12         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66         0.89         0.13         0.10         0.46 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
        1.55         2.93         0.59         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             0.99              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           114.05            173.79 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
           16.655            11.740 
[1] "1.0 - 114.0 (16.7)" "0.0 - 173.8 (11.7)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED"   "2P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D43V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2P LOSS MUTATED         0        1        4        0         0         3
  2P LOSS WILD-TYPE       1       66      127        1        45        62
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2P LOSS MUTATED            6          1        0
  2P LOSS WILD-TYPE         47         19        5
D43V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     3   8   2   2
  2P LOSS WILD-TYPE  89 231  40  16
D43V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               3                89
  T2               8               231
  T3               2                40
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  2P LOSS MUTATED     6   5   4   0
  2P LOSS WILD-TYPE 239  98  29   5
D43V5, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0               6               239
  N1               5                98
  N2               4                29
  N3               0                 5
                   vv
clus                 M0  M1  MX
  2P LOSS MUTATED    15   0   0
  2P LOSS WILD-TYPE 318   5  47
D43V6, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  M0              15               318
  M1               0                 5
  MX               0                47
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     6   9
  2P LOSS WILD-TYPE  92 284
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      6    9
  2P LOSS WILD-TYPE   92  284
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE               6                92
  MALE                 9               284
D43V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                       0
  2P LOSS WILD-TYPE                                    12
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2P LOSS MUTATED                                        0
  2P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2P LOSS MUTATED                                         0
  2P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P LOSS MUTATED                                                            15
  2P LOSS WILD-TYPE                                                         358
D43V9, multiclass
                                                             clus
vv                                                            2P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              15
                                                             clus
vv                                                            2P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               358
D43V10, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     1  14
  2P LOSS WILD-TYPE  11 365
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1   14
  2P LOSS WILD-TYPE   11  365
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                1                11
  YES              14               365
D43V11, continuous
D43V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P LOSS MUTATED    15   0   0   0
  2P LOSS WILD-TYPE 302   7   4  18
D43V13, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  R0              15               302
  R1               0                 7
  R2               0                 4
  RX               0                18

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    19   9
  2Q LOSS WILD-TYPE 216 113
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               28               329 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                9               113 
$`2Q LOSS MUTATED`
TCGA-18-3417 TCGA-21-1082 TCGA-21-5786 TCGA-21-5787 TCGA-22-4604 TCGA-22-5481 
       24.92       119.80        21.73        10.82        13.12        79.20 
TCGA-33-4533 TCGA-37-4129 TCGA-37-4141 TCGA-39-5028 TCGA-43-2578 TCGA-43-7657 
      114.05         6.54         0.39         1.71        22.49         1.58 
TCGA-43-8115 TCGA-51-4081 TCGA-56-1622 TCGA-58-8392 TCGA-58-A46K TCGA-60-2713 
        6.64        29.95        28.93        16.47        34.36        56.91 
TCGA-60-2724 TCGA-66-2763 TCGA-66-2767 TCGA-66-2800 TCGA-77-8007 TCGA-85-7699 
       23.57         0.99         2.01        49.05         6.51         0.03 
TCGA-85-8288 TCGA-85-8352 TCGA-85-8664 TCGA-90-A4EE 
        1.78         2.20         0.10        10.88 

$`2Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43         9.30         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
        7.63        97.94        43.10       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       14.07        54.44        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
       61.61        31.50        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 
        0.39         8.09         7.46         7.82         6.81         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
       60.76        24.33         1.94        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 
       35.64        35.70        17.88        17.06        24.59        13.12 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       27.02        11.74        11.47        18.05        12.36        12.46 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7658 TCGA-43-8116 
       10.19         5.42         3.78         6.97        66.51         6.35 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.93         9.96        10.65        13.87         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 
       17.79         5.42        30.31         8.75        27.45         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.32         0.85         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 
        0.03        13.25        12.43         8.94        44.09         0.66 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       66.51        41.39         9.01        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 
       42.61         3.16        32.28        29.85        35.90        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 
       25.02         2.01         1.02         2.01         7.07        23.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       19.00         3.02         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
        4.01         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 
       46.78        15.75        86.76        53.95        82.92       104.09 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB 
       27.39         9.63        55.33        35.90         0.33        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       23.44         0.36         0.79         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         1.15         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.45         1.97         1.81         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL 
        0.72         0.66         0.89         0.13         0.46         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 
        0.82         0.62         0.79         0.43        24.89         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 
        2.93         0.59         3.29         8.02         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        4.01         5.26         2.27         2.86         0.16         4.70 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
       39.88        44.15         6.18         6.90         8.42         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
       13.58         7.33        10.13         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.03              0.03 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           119.80            173.79 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            12.00             11.74 
[1] "0.0 - 119.8 (12.0)" "0.0 - 173.8 (11.7)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"2Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D44V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  2Q LOSS MUTATED         0        3        8        0         4         6
  2Q LOSS WILD-TYPE       1       64      123        1        41        59
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  2Q LOSS MUTATED            6          2        1
  2Q LOSS WILD-TYPE         47         18        4
D44V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     5  20   2   3
  2Q LOSS WILD-TYPE  87 219  40  15
D44V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               5                87
  T2              20               219
  T3               2                40
  T4               3                15
                   vv
clus                 N0  N1  N2  N3
  2Q LOSS MUTATED    13  14   2   1
  2Q LOSS WILD-TYPE 232  89  31   4
D44V5, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0              13               232
  N1              14                89
  N2               2                31
  N3               1                 4
                   vv
clus                 M0  M1  MX
  2Q LOSS MUTATED    26   1   3
  2Q LOSS WILD-TYPE 307   4  44
D44V6, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  M0              26               307
  M1               1                 4
  MX               3                44
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     9  21
  2Q LOSS WILD-TYPE  89 272
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      9   21
  2Q LOSS WILD-TYPE   89  272
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE               9                89
  MALE                21               272
D44V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                       1
  2Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  2Q LOSS MUTATED                                        0
  2Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  2Q LOSS MUTATED                                         0
  2Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q LOSS MUTATED                                                            29
  2Q LOSS WILD-TYPE                                                         344
D44V9, multiclass
                                                             clus
vv                                                            2Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              29
                                                             clus
vv                                                            2Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               344
D44V10, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     1  29
  2Q LOSS WILD-TYPE  11 350
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      1   29
  2Q LOSS WILD-TYPE   11  350
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                1                11
  YES              29               350
D44V11, continuous
D44V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q LOSS MUTATED    28   0   0   0
  2Q LOSS WILD-TYPE 289   7   4  18
D44V13, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  R0              28               289
  R1               0                 7
  R2               0                 4
  RX               0                18

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED   152  70
  3P LOSS WILD-TYPE  83  52
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              222               135 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               70                52 
$`3P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3416 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       28.34        24.92         6.15         2.79        90.51         3.02 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1079 TCGA-21-1082 TCGA-21-1083 
      119.54        46.88        70.13        31.69       119.80         8.78 
TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       31.63        88.08        21.73        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4599 
        7.33        14.10        27.02        20.45        48.33        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60         0.79        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5492 TCGA-33-4532 TCGA-33-4583 
       79.20        11.74        18.84        16.60         7.63       141.34 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-5231 TCGA-34-5239 TCGA-34-5929 TCGA-37-4129 
       28.96        32.84        50.24        10.82         4.96         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 
        8.09         7.46         7.82         0.39        47.80        74.07 
TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       70.03        60.76         1.71         1.94        27.35        15.58 
TCGA-39-5036 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 
       35.64        24.59        13.12        11.74        12.36        10.19 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        6.97         1.58        66.51         6.64         6.35         2.93 
TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
        0.39         0.39        29.95        17.79         5.42         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 
       27.45        28.93         0.10         2.04         0.99         0.43 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.45         1.32         0.85         0.03         1.35         5.82 
TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY 
        1.18         0.56         0.53         1.12         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 
        1.02         0.13         0.26         0.03        12.43         8.94 
TCGA-58-8391 TCGA-58-A46K TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2704 
       44.09        34.36        21.07         3.58        10.22        37.94 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2719 
       21.70        80.42        66.51        41.39         9.01        42.61 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       32.28        29.85        23.57        26.79        11.77        43.10 
TCGA-66-2742 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 
       21.07         2.01         0.92         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2778 
        2.01         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 TCGA-66-2787 
       12.03         3.98        12.00        24.95        25.97        40.01 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 
       22.98        22.98         5.03        30.02        10.06         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8130 
        0.49        42.25        70.09       106.95         0.16        82.92 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
      104.09        27.39         9.63        55.33        35.90         0.33 
TCGA-77-A5GH TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
       23.44         0.33         1.61         0.03         1.25         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8288 
        0.53         1.41         0.46         1.18         0.36         1.78 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8666 
        1.81         1.78         0.66         0.72         0.66         0.46 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.46         0.82         0.43         1.55         2.93         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        8.02        10.88         3.48         4.01         5.26         2.27 
TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-8021 TCGA-98-8023 
        0.16        39.88         6.18         6.90        13.58        10.13 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15         1.18         3.02        56.61        50.86        37.32 

$`3P LOSS WILD-TYPE`
TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 TCGA-18-3419 TCGA-18-3421 TCGA-18-5595 
        4.80        13.02        59.51         1.61        43.76        27.16 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 
       99.16        60.89        34.78        15.55       122.43         9.30 
TCGA-21-5784 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 
       29.85        14.93         4.31        64.21         1.74        48.82 
TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-5477 TCGA-22-5485 
       35.08        24.13         0.56        34.75        44.22        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       62.86        56.32       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4586 TCGA-33-6737 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 
      103.53        14.07        19.76        31.23        51.78        32.68 
TCGA-34-5236 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 
        9.04         7.73        14.07        22.95         5.52         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4135 TCGA-37-5819 TCGA-39-5019 
        3.95         0.43         0.39         6.81         3.39        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5029 TCGA-39-5034 TCGA-39-5037 TCGA-39-5039 
       68.58        55.17        24.33        36.39        35.70        17.88 
TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 
       17.06        22.49        27.02        11.47        18.05        12.46 
TCGA-43-6771 TCGA-43-6773 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7810 
        5.42         3.78         9.96        10.65        13.87        30.31 
TCGA-56-6546 TCGA-56-7223 TCGA-56-7730 TCGA-56-8622 TCGA-56-8625 TCGA-56-A49D 
        1.02         0.99         0.20         1.78         2.07         0.99 
TCGA-58-8387 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N TCGA-60-2697 
       13.25        16.47         0.66        36.59        17.72        12.23 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2709 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       96.82        92.71        49.48        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2723 TCGA-66-2727 TCGA-66-2737 TCGA-66-2744 
       48.49         3.16        35.90        16.96         2.01         0.99 
TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 TCGA-66-2773 
        1.02         0.99        25.02         1.02        19.00         3.02 
TCGA-66-2777 TCGA-66-2785 TCGA-66-2789 TCGA-66-2794 TCGA-77-7140 TCGA-77-7463 
        2.01         1.94         4.04        54.08        20.78        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-A5GB TCGA-85-6560 
       15.75         6.51        86.76        53.95        30.81         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 
        0.79         1.12         0.59         1.15         0.85         1.97 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-8354 TCGA-85-8580 
        0.43         1.45         1.97         2.20         2.01         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 
        0.13         0.10         0.62         0.79        24.89         0.59 
TCGA-92-7340 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-98-7454 TCGA-98-8020 
        2.70         2.86         4.70        44.15         8.42         2.73 
TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A524 
        7.33         7.30        14.76 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.10 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           141.34            173.79 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            10.93             13.87 
[1] "0.0 - 141.3 (10.9)" "0.1 - 173.8 (13.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "3P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
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"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
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  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "3P LOSS MUTATED" 
[1] "hr=" "1.1"
D45V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3P LOSS MUTATED         1       41       86        0        25        37
  3P LOSS WILD-TYPE       0       26       45        1        20        28
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3P LOSS MUTATED           31         14        4
  3P LOSS WILD-TYPE         22          6        1
D45V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P LOSS MUTATED    58 145  27  12
  3P LOSS WILD-TYPE  34  94  15   6
D45V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              58                34
  T2             145                94
  T3              27                15
  T4              12                 6
                   vv
clus                 N0  N1  N2  N3
  3P LOSS MUTATED   157  62  18   4
  3P LOSS WILD-TYPE  88  41  15   1
D45V5, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0             157                88
  N1              62                41
  N2              18                15
  N3               4                 1
                   vv
clus                 M0  M1  MX
  3P LOSS MUTATED   203   4  31
  3P LOSS WILD-TYPE 130   1  16
D45V6, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  M0             203               130
  M1               4                 1
  MX              31                16
D45V7, binary
                   cls
clus                  0   1
  3P LOSS MUTATED    67 175
  3P LOSS WILD-TYPE  31 118
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED     67  175
  3P LOSS WILD-TYPE   31  118
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE              67                31
  MALE               175               118
D45V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                       9
  3P LOSS WILD-TYPE                                     3
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3P LOSS MUTATED                                        3
  3P LOSS WILD-TYPE                                      2
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3P LOSS MUTATED                                         1
  3P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P LOSS MUTATED                                                           229
  3P LOSS WILD-TYPE                                                         144
D45V9, multiclass
                                                             clus
vv                                                            3P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             229
                                                             clus
vv                                                            3P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               144
D45V10, binary
                   cls
clus                  0   1
  3P LOSS MUTATED     9 233
  3P LOSS WILD-TYPE   3 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      9  233
  3P LOSS WILD-TYPE    3  146
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                9                 3
  YES             233               146
D45V11, continuous
D45V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P LOSS MUTATED   196   4   3  11
  3P LOSS WILD-TYPE 121   3   1   7
D45V13, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  R0             196               121
  R1               4                 3
  R2               3                 1
  RX              11                 7

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    36  22
  3Q LOSS WILD-TYPE 199 100
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               58               299 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               22               100 
$`3Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1075 TCGA-21-1079 
       81.07        11.34        28.34         3.02        70.13        31.69 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5787 TCGA-22-0944 TCGA-22-1016 TCGA-22-4594 
      119.80        31.63        10.82         7.33        27.02        48.33 
TCGA-22-4604 TCGA-22-5482 TCGA-22-5483 TCGA-33-4583 TCGA-33-6738 TCGA-34-5929 
       13.12        11.74        18.84       141.34        26.99         4.96 
TCGA-37-4129 TCGA-39-5011 TCGA-39-5027 TCGA-43-2581 TCGA-52-7811 TCGA-56-1622 
        6.54        47.80        60.76        13.12         8.75        28.93 
TCGA-56-7221 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-8503 TCGA-58-8388 
        0.99         1.45         1.32         0.85         1.35        12.43 
TCGA-60-2696 TCGA-60-2698 TCGA-60-2722 TCGA-66-2754 TCGA-66-2757 TCGA-66-2769 
        3.58        10.22        29.85         2.01         0.99         7.07 
TCGA-66-2782 TCGA-66-2788 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-77-6843 
       12.00        22.98         5.03        10.06         4.01        73.08 
TCGA-77-6844 TCGA-77-7142 TCGA-77-8130 TCGA-77-8154 TCGA-85-7698 TCGA-85-8070 
       75.09        42.25        82.92        35.90         1.61         1.41 
TCGA-85-8071 TCGA-85-8355 TCGA-85-8481 TCGA-85-A53L TCGA-90-A4ED TCGA-92-7341 
        0.46         0.66         0.66         0.43         8.02         3.48 
TCGA-94-7557 TCGA-96-8169 TCGA-98-8023 TCGA-NC-A5HE 
        0.16         6.18        10.13        56.61 

$`3Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 
       90.51        27.16       119.54        46.88        99.16        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 TCGA-21-5783 
       34.78        15.55       122.43         9.30         8.78        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       29.85        21.73        32.19        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        48.82        20.45        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 
       24.13         0.56        38.17        34.75        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5485 
       44.22         0.79        54.28        71.34        79.20        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 
       43.10       173.79       103.53        14.07        54.44        10.98 
TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       19.76         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07        22.95         5.52         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 
        0.43         0.39         8.09         7.46         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 
        0.39         3.39        74.07        44.71        68.58        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       70.03         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        24.59 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       22.49        27.02        11.74        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 
       12.46        10.19         5.42         3.78         6.97         1.58 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 
       66.51         6.64         6.35         2.93         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.87         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 
       30.31        27.45         0.10         2.04         1.02         0.43 
TCGA-56-7223 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        0.99         0.20         0.03         5.82         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
        8.94        44.09        16.47         0.66        34.36        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
       17.72        21.07        12.23        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       32.28        35.90        23.57        26.79        11.77        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 
       43.10         2.01        21.07         0.99         1.02         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 
       40.01         4.04        22.98        30.02        54.08        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 
       23.28        11.18        89.95        20.78         0.49        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8156 
       53.95       104.09        27.39         9.63        55.33         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.97         0.53         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.72         0.89         0.13         0.10         0.46         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.82         0.62         0.79        24.89         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 
        0.59         3.29        10.88         2.70         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 
        2.27         2.86         4.70        39.88        44.15         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 
        8.42         2.73        13.58         7.33         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         3.02        50.86        37.32 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.16              0.03 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
           141.34            173.79 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            10.52             12.03 
[1] "0.2 - 141.3 (10.5)" "0.0 - 173.8 (12.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"3Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"3Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D46V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  3Q LOSS MUTATED         0        7       22        0         7        11
  3Q LOSS WILD-TYPE       1       60      109        1        38        54
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  3Q LOSS MUTATED           10          5        0
  3Q LOSS WILD-TYPE         43         15        5
D46V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED    12  35  13   3
  3Q LOSS WILD-TYPE  80 204  29  15
D46V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1              12                80
  T2              35               204
  T3              13                29
  T4               3                15
                   vv
clus                 N0  N1  N2  N3
  3Q LOSS MUTATED    41  17   4   1
  3Q LOSS WILD-TYPE 204  86  29   4
D46V5, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0              41               204
  N1              17                86
  N2               4                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  3Q LOSS MUTATED    59   0   3
  3Q LOSS WILD-TYPE 274   5  44
D46V6, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  M0              59               274
  M1               0                 5
  MX               3                44
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    13  50
  3Q LOSS WILD-TYPE  85 243
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     13   50
  3Q LOSS WILD-TYPE   85  243
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              13                85
  MALE                50               243
D46V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                       1
  3Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  3Q LOSS MUTATED                                        2
  3Q LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  3Q LOSS MUTATED                                         0
  3Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q LOSS MUTATED                                                            60
  3Q LOSS WILD-TYPE                                                         313
D46V9, multiclass
                                                             clus
vv                                                            3Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              60
                                                             clus
vv                                                            3Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               313
D46V10, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     2  61
  3Q LOSS WILD-TYPE  10 318
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      2   61
  3Q LOSS WILD-TYPE   10  318
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                2                10
  YES              61               318
D46V11, continuous
D46V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q LOSS MUTATED    52   2   0   3
  3Q LOSS WILD-TYPE 265   5   4  15
D46V13, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  R0              52               265
  R1               2                 5
  R2               0                 4
  RX               3                15

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED   148  71
  4P LOSS WILD-TYPE  87  51
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              219               138 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               71                51 
$`4P LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 
        4.47        46.52        11.34        59.51        28.34        24.92 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       43.76         6.15         2.79         3.02       119.54        46.88 
TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 
       99.16        60.89        34.78        31.69       122.43       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 
        8.78        31.63        21.73        10.82        19.99         7.33 
TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 
       14.93         1.74        14.10        35.08        48.33        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 
       13.12        32.02        19.30         9.53        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5483 TCGA-22-5485 
       63.52        14.60        44.22        54.28        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32         7.63       114.05        97.94        43.10 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 
       26.99        61.61        28.96        50.24        51.78         9.04 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
       14.07        22.95         5.52         4.96         1.08         3.95 
TCGA-37-3789 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.43         7.82         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 
       44.71        68.58        60.76        27.35        36.39        15.58 
TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 TCGA-43-6143 
       35.64        35.70        17.06        22.49        27.02        12.36 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8118 
        5.42         3.78         6.97         1.58         6.64         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 
        9.96        10.65        13.87        29.95         5.42        30.31 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 
        8.75        27.45        28.93         2.04         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-A49D TCGA-56-A4BX 
        0.99         1.45         0.85         0.20         0.99         1.51 
TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
        0.13        13.25        16.47         0.66        34.36        36.59 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2707 TCGA-60-2708 
       21.07         3.58        10.22        96.82        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.51        41.39         9.01        56.91        50.33 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2724 TCGA-60-2726 
       42.61         3.16        32.28        29.85        23.57        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 
       16.96        43.10         2.01        21.07         1.02         2.01 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2767 TCGA-66-2771 TCGA-66-2773 
       20.98        25.02         2.01         2.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 
        2.01        19.00        12.03         3.98        24.95         1.94 
TCGA-66-2786 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       25.97         5.03        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 
       49.05         2.73         6.64        73.08        89.95         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
       42.25        70.09        53.95        82.92       104.09        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
        9.63        55.33        35.90        30.81        23.44         0.79 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 
        0.59         0.33         1.61         0.03         1.15         0.85 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.45         1.78         1.97         2.20         1.78         2.01 
TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A53L 
        0.89         0.10         0.46         0.46         0.82         0.43 
TCGA-90-7766 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 
        1.55         3.29         8.02        10.88         2.70         3.48 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-98-7454 
        4.01         5.26         2.27         0.16         4.70         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
        2.73        13.58         1.15        14.76         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       56.61        50.86        37.32 

$`4P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3419 
       12.16        81.07        79.46         4.80        13.02         1.61 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1075 TCGA-21-1078 TCGA-21-1081 TCGA-21-5783 
       90.51        27.16        70.13        15.55         9.30        88.08 
TCGA-21-5784 TCGA-21-A5DI TCGA-22-1002 TCGA-22-1005 TCGA-22-1016 TCGA-22-1017 
       29.85        32.19         4.31        64.21        27.02        48.82 
TCGA-22-4591 TCGA-22-4595 TCGA-22-4596 TCGA-22-4601 TCGA-22-4613 TCGA-22-5478 
       20.45        24.13         0.56        34.75        11.77         0.79 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5492 TCGA-33-4566 TCGA-34-2596 
       71.34        79.20        11.74        16.60       173.79         2.63 
TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       31.50        32.84        31.23        32.68        10.82         7.73 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-39-5011 TCGA-39-5022 
        0.39         6.54         8.09         7.46        47.80        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5039 TCGA-43-2576 
       70.03         1.71        24.33         1.94        17.88        24.59 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       13.12        11.74        11.47        18.05        12.46        10.19 
TCGA-43-7658 TCGA-43-8116 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-56-5897 
       66.51         6.35         0.39         0.39        17.79         0.10 
TCGA-56-6546 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        1.02         1.32         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BY 
        1.18         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        1.02         0.26         0.03        12.43         8.94        44.09 
TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 TCGA-60-2715 TCGA-60-2716 
       17.72        12.23        37.94        92.71        35.34        48.49 
TCGA-60-2723 TCGA-60-2725 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
       35.90        26.79         0.99         0.92         0.99         0.99 
TCGA-66-2763 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2782 
        0.99         1.02         2.01         7.07        23.01        12.00 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-68-7757 TCGA-68-8250 
       40.01        22.98         4.04        22.98         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        3.12        29.56        75.09        23.28        11.18        20.78 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8156 TCGA-85-6560 TCGA-85-6798 TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 
        0.33         0.36         1.12         1.25         1.97         1.97 
TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-A50M 
        1.81         0.66         0.72         0.66         0.13         0.62 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-94-7033 TCGA-96-7544 
        0.79        24.89         2.93         0.59         2.86        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
       44.15         6.18         6.90         7.33        10.13         7.30 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.03              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           141.34            173.79 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
            13.58             10.16 
[1] "0.0 - 141.3 (13.6)" "0.0 - 173.8 (10.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4P LOSS MUTATED" 
[1] "hr=" "1.3"
D47V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4P LOSS MUTATED         0       34       88        1        30        32
  4P LOSS WILD-TYPE       1       33       43        0        15        33
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4P LOSS MUTATED           34         14        2
  4P LOSS WILD-TYPE         19          6        3
D47V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P LOSS MUTATED    50 152  25  10
  4P LOSS WILD-TYPE  42  87  17   8
D47V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              50                42
  T2             152                87
  T3              25                17
  T4              10                 8
                   vv
clus                 N0  N1  N2  N3
  4P LOSS MUTATED   146  63  22   4
  4P LOSS WILD-TYPE  99  40  11   1
D47V5, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0             146                99
  N1              63                40
  N2              22                11
  N3               4                 1
                   vv
clus                 M0  M1  MX
  4P LOSS MUTATED   207   2  25
  4P LOSS WILD-TYPE 126   3  22
D47V6, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  M0             207               126
  M1               2                 3
  MX              25                22
D47V7, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    56 181
  4P LOSS WILD-TYPE  42 112
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     56  181
  4P LOSS WILD-TYPE   42  112
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              56                42
  MALE               181               112
D47V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                       7
  4P LOSS WILD-TYPE                                     5
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4P LOSS MUTATED                                        1
  4P LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4P LOSS MUTATED                                         1
  4P LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P LOSS MUTATED                                                           228
  4P LOSS WILD-TYPE                                                         145
D47V9, multiclass
                                                             clus
vv                                                            4P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             228
                                                             clus
vv                                                            4P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               145
D47V10, binary
                   cls
clus                  0   1
  4P LOSS MUTATED     9 228
  4P LOSS WILD-TYPE   3 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      9  228
  4P LOSS WILD-TYPE    3  151
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                9                 3
  YES             228               151
D47V11, continuous
D47V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P LOSS MUTATED   192   4   4  10
  4P LOSS WILD-TYPE 125   3   0   8
D47V13, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  R0             192               125
  R1               4                 3
  R2               4                 0
  RX              10                 8

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED   134  66
  4Q LOSS WILD-TYPE 101  56
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              200               157 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               66                56 
$`4Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-4083 TCGA-18-4086 
        4.47        46.52        11.34        59.51         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       60.89        34.78        31.69       122.43       119.80         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1011 
       31.63        21.73        10.82         7.33        14.93         1.74 
TCGA-22-1012 TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       14.10        48.33        38.17        13.12        32.02        19.30 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5479 
       11.77        31.73        64.90        63.52        14.60        54.28 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 
       18.84        30.08        62.86        56.32         7.63       114.05 
TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       97.94       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-5236 TCGA-34-5241 
       10.98        19.76        61.61        28.96         9.04        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-4133 TCGA-37-4135 
       22.95         5.52         4.96         1.08         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5031 
        0.39         3.39        44.71        68.58        60.76        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5040 TCGA-43-2578 
       36.39        15.58        35.64        35.70        17.06        22.49 
TCGA-43-3394 TCGA-43-6143 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 
       27.02        12.36         5.42         3.78         1.58        66.51 
TCGA-43-8115 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         2.93         9.96        10.65        13.87         0.39 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-6545 
       29.95         5.42        30.31         8.75        28.93         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7582 TCGA-56-7730 TCGA-56-8625 
        0.99         0.43         0.99         0.85         0.20         2.07 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-58-8390 TCGA-58-8392 
        1.12         0.99         1.51         1.02         8.94        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2698 
        0.66        34.36        36.59        21.07         3.58        10.22 
TCGA-60-2703 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 
       96.82        21.70        80.42        49.48        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       56.91        50.33        42.61         3.16        32.28        29.85 
TCGA-60-2724 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.57        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 
        1.02         2.01         0.99        20.98         0.99         2.01 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2785 
       19.00         3.02         2.01        19.00        12.03         1.94 
TCGA-66-2786 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       25.97         5.03        30.02        10.06         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 
        2.73         6.64         6.94        73.08        89.95         0.49 
TCGA-77-7142 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
       42.25        53.95        82.92       104.09        27.39         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 
       55.33        35.90        30.81        23.44         0.79         1.12 
TCGA-85-7696 TCGA-85-7699 TCGA-85-8048 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        0.59         0.03         0.85         0.53         1.41         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 
        0.43         0.36         1.45         1.97         2.20         1.78 
TCGA-85-8479 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        0.72         0.89         0.10         0.46         0.46         0.82 
TCGA-85-A53L TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        0.43         0.59         3.29         8.02        10.88         2.70 
TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-94-7943 TCGA-98-7454 
        4.01         5.26         2.27         0.16         4.70         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       13.58         7.33        14.76         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

$`4Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3416 
       12.16        81.07        79.46         4.80        13.02        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-5595 TCGA-21-1078 TCGA-21-1081 
       24.92         1.61        43.76        27.16        15.55         9.30 
TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 
       88.08        29.85        32.19        19.99         4.31        64.21 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        35.08        24.13         0.56 
TCGA-22-4601 TCGA-22-4609 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       34.75         9.53        44.22         0.79        71.34        79.20 
TCGA-22-5482 TCGA-22-5492 TCGA-33-4547 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       11.74        16.60        43.10        26.99         2.63        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       32.84        31.23        50.24        51.78        32.68        10.82 
TCGA-34-5240 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        7.73         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        7.46        47.80        74.07        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-3920 
       24.33         1.94        17.88        24.59        13.12        11.74 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-7656 TCGA-43-8116 
       11.47        18.05        12.46        10.19         6.97         6.35 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7812 TCGA-56-5897 TCGA-56-6546 TCGA-56-7579 
        0.39        17.79        27.45         0.10         1.02         1.45 
TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 
        1.32         0.03         1.35         5.82         1.78         1.18 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.56         0.53         0.99         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 
       13.25        12.43        44.09        17.72        12.23        37.94 
TCGA-60-2706 TCGA-60-2710 TCGA-60-2715 TCGA-60-2716 TCGA-60-2723 TCGA-60-2725 
       92.71        66.51        35.34        48.49        35.90        26.79 
TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2759 TCGA-66-2766 TCGA-66-2767 
        0.99         0.92         0.99        25.02         1.02         2.01 
TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        2.01         7.07        23.01         3.98        12.00        24.95 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2794 TCGA-68-8250 
       40.01        22.98         4.04        22.98        54.08         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        3.12        29.56        75.09        23.28        11.18        20.78 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.09       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8156 TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
       86.76         0.33         0.36         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8071 TCGA-85-8288 TCGA-85-8351 
        1.25         1.97         1.97         0.46         1.78         1.81 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-85-A50M TCGA-85-A513 
        2.01         0.66         0.66         0.13         0.62         0.79 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-92-7341 TCGA-94-7033 TCGA-96-7544 
       24.89         1.55         2.93         3.48         2.86        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-98-8023 TCGA-J1-A4AH 
       44.15         6.18         6.90         2.73        10.13         7.30 
TCGA-L3-A4E7 
        1.15 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.03              0.03 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           173.79            106.95 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            11.90             11.47 
[1] "0.0 - 173.8 (11.9)" "0.0 - 107.0 (11.5)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
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  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
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"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "4Q LOSS MUTATED" 
[1] "hr=" "1.3"
D48V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  4Q LOSS MUTATED         0       37       82        1        21        33
  4Q LOSS WILD-TYPE       1       30       49        0        24        32
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  4Q LOSS MUTATED           30         10        1
  4Q LOSS WILD-TYPE         23         10        4
D48V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q LOSS MUTATED    47 138  24   8
  4Q LOSS WILD-TYPE  45 101  18  10
D48V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              47                45
  T2             138               101
  T3              24                18
  T4               8                10
                   vv
clus                 N0  N1  N2  N3
  4Q LOSS MUTATED   142  56  15   2
  4Q LOSS WILD-TYPE 103  47  18   3
D48V5, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0             142               103
  N1              56                47
  N2              15                18
  N3               2                 3
                   vv
clus                 M0  M1  MX
  4Q LOSS MUTATED   188   1  25
  4Q LOSS WILD-TYPE 145   4  22
D48V6, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  M0             188               145
  M1               1                 4
  MX              25                22
D48V7, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    58 159
  4Q LOSS WILD-TYPE  40 134
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     58  159
  4Q LOSS WILD-TYPE   40  134
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              58                40
  MALE               159               134
D48V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                       6
  4Q LOSS WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  4Q LOSS MUTATED                                        2
  4Q LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  4Q LOSS MUTATED                                         1
  4Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q LOSS MUTATED                                                           208
  4Q LOSS WILD-TYPE                                                         165
D48V9, multiclass
                                                             clus
vv                                                            4Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             208
                                                             clus
vv                                                            4Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               165
D48V10, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED     9 208
  4Q LOSS WILD-TYPE   3 171
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      9  208
  4Q LOSS WILD-TYPE    3  171
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                9                 3
  YES             208               171
D48V11, continuous
D48V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q LOSS MUTATED   175   3   3  12
  4Q LOSS WILD-TYPE 142   4   1   6
D48V13, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  R0             175               142
  R1               3                 4
  R2               3                 1
  RX              12                 6

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    42  18
  5P LOSS WILD-TYPE 193 104
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               60               297 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               18               104 
$`5P LOSS MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-4083 TCGA-21-1070 TCGA-21-1079 TCGA-22-4607 
       79.46         4.80         6.15       119.54        31.69        19.30 
TCGA-22-5472 TCGA-22-5479 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 
       64.90        54.28        30.08        56.32         7.63        97.94 
TCGA-33-4547 TCGA-33-6737 TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-37-4130 
       43.10        19.76        61.61        28.96        50.24         8.09 
TCGA-39-5037 TCGA-43-2578 TCGA-43-8118 TCGA-51-4079 TCGA-52-7810 TCGA-56-5897 
       35.70        22.49         2.93         0.39        30.31         0.10 
TCGA-56-7730 TCGA-56-8622 TCGA-56-A49D TCGA-58-A46L TCGA-60-2706 TCGA-60-2707 
        0.20         1.78         0.99        36.59        92.71        21.70 
TCGA-60-2708 TCGA-60-2710 TCGA-60-2713 TCGA-66-2734 TCGA-66-2755 TCGA-66-2780 
       80.42        66.51        56.91        43.10         0.92        12.03 
TCGA-66-2785 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-68-8250 TCGA-68-8251 
        1.94         4.04         5.03        10.06         8.02         3.12 
TCGA-77-7139 TCGA-77-7142 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-85-6561 
       89.95        42.25         9.63        55.33        35.90         0.79 
TCGA-85-7698 TCGA-85-7950 TCGA-85-8276 TCGA-85-8288 TCGA-85-8352 TCGA-85-8355 
        1.61         1.97         0.43         1.78         2.20         0.66 
TCGA-90-7964 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7943 TCGA-NC-A5HI 
        3.29         4.01         5.26         2.86         4.70        37.32 

$`5P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       59.51        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02        27.16        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        15.55       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        29.85        21.73        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 
       32.02         9.53        11.77        31.73        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
       44.22         0.79        71.34        79.20        11.74        18.84 
TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       62.86        16.60       114.05       173.79       103.53       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       14.07        54.44        10.98        26.99         2.63        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       32.84        31.23        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 
        3.95         0.43         0.39         6.54         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        6.81         0.39         3.39        47.80        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       68.58        55.17        70.03        60.76         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 
        1.94        27.35        36.39        15.58        35.64        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 
       17.06        24.59        13.12        27.02        11.74        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       18.05        12.36        12.46        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65        13.87         0.39        29.95        17.79         5.42 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45        28.93         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 
        0.43         0.99         1.45         1.32         0.85         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         5.82         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43         8.94        44.09        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
        0.66        34.36        17.72        21.07         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2711 TCGA-60-2712 
       10.22        96.82        37.94        49.48        41.39         9.01 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       50.33        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
       29.85        35.90        23.57        26.79        11.77        16.96 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 
        2.01        21.07         0.99         1.02         2.01         0.99 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2786 
        2.01        19.00         3.98        12.00        24.95        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
       40.01        22.98        22.98        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-77-6842 TCGA-77-6843 
       49.05         2.73         6.64         6.94        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 
       75.09        23.28        11.18        20.78         0.49        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8156 TCGA-77-A5GB 
       53.95        82.92       104.09        27.39         0.33        30.81 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 
       23.44         0.36         1.12         0.59         0.33         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        1.15         1.25         0.85         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 
        0.46         1.18         0.36         1.45         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        1.78         2.01         0.72         0.66         0.89         0.13 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10         0.46         0.46         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED 
        0.43        24.89         1.55         2.93         0.59         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8065 TCGA-94-7557 TCGA-96-7544 
       10.88         2.70         3.48         2.27         0.16        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.15         6.18         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.33        10.13         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        3.02        56.61        50.86 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.10              0.03 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           119.54            173.79 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
           11.045            11.740 
[1] "0.1 - 119.5 (11.0)" "0.0 - 173.8 (11.7)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "5P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "5P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "5P LOSS MUTATED" 
[1] "hr=" "1.4"
D49V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5P LOSS MUTATED         0       14       23        0         8         5
  5P LOSS WILD-TYPE       1       53      108        1        37        60
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5P LOSS MUTATED           10          4        0
  5P LOSS WILD-TYPE         43         16        5
D49V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED    23  33   7   2
  5P LOSS WILD-TYPE  69 206  35  16
D49V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1              23                69
  T2              33               206
  T3               7                35
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  5P LOSS MUTATED    44  13   5   2
  5P LOSS WILD-TYPE 201  90  28   3
D49V5, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0              44               201
  N1              13                90
  N2               5                28
  N3               2                 3
                   vv
clus                 M0  M1  MX
  5P LOSS MUTATED    56   0   8
  5P LOSS WILD-TYPE 277   5  39
D49V6, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  M0              56               277
  M1               0                 5
  MX               8                39
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    15  50
  5P LOSS WILD-TYPE  83 243
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     15   50
  5P LOSS WILD-TYPE   83  243
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              15                83
  MALE                50               243
D49V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                       2
  5P LOSS WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5P LOSS MUTATED                                        1
  5P LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5P LOSS MUTATED                                         0
  5P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P LOSS MUTATED                                                            62
  5P LOSS WILD-TYPE                                                         311
D49V9, multiclass
                                                             clus
vv                                                            5P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              62
                                                             clus
vv                                                            5P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               311
D49V10, binary
                   cls
clus                  0   1
  5P LOSS MUTATED     3  62
  5P LOSS WILD-TYPE   9 317
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      3   62
  5P LOSS WILD-TYPE    9  317
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                3                 9
  YES              62               317
D49V11, continuous
D49V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P LOSS MUTATED    48   1   0   6
  5P LOSS WILD-TYPE 269   6   4  12
D49V13, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  R0              48               269
  R1               1                 6
  R2               0                 4
  RX               6                12

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED   146  62
  5Q LOSS WILD-TYPE  89  60
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              208               149 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               62                60 
$`5Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       81.07        79.46         4.80        46.52        11.34        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       59.51        28.34        24.92         6.15         2.79        90.51 
TCGA-21-1070 TCGA-21-1072 TCGA-21-1079 TCGA-21-1082 TCGA-21-5784 TCGA-21-5786 
      119.54        99.16        31.69       119.80        29.85        21.73 
TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 TCGA-22-1016 TCGA-22-4591 
       10.82        19.99         7.33         4.31        27.02        20.45 
TCGA-22-4593 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       35.08        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
        9.53        31.73        64.90        63.52        14.60        44.22 
TCGA-22-5479 TCGA-22-5485 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       54.28        30.08        56.32         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4586 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 
       43.10        14.07        54.44        19.76        26.99        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5239 
       31.50        28.96        32.84        31.23        50.24        10.82 
TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
       22.95         4.96         1.08         8.09         7.46         7.82 
TCGA-37-4135 TCGA-39-5011 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 
        6.81        47.80        74.07        70.03        60.76        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-43-2576 TCGA-43-2578 
        1.94        27.35        35.64        35.70        24.59        22.49 
TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 
       13.12        27.02        11.47        12.46        10.19         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 
        6.97         1.58         6.35         2.93         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
       13.87         0.39        29.95        17.79         5.42        30.31 
TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6546 TCGA-56-7221 TCGA-56-7579 
        8.75        28.93         0.10         1.02         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 
        0.85         0.20         0.03         1.78         2.07         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.12         0.99         1.51         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-A46K 
        0.26        13.25        12.43        44.09        16.47        34.36 
TCGA-58-A46L TCGA-60-2695 TCGA-60-2696 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       36.59        21.07         3.58        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2720 
       49.48        66.51        41.39        56.91        50.33         3.16 
TCGA-60-2721 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 
       32.28        16.96        43.10         2.01        21.07         1.02 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2766 
        0.92         0.99         0.99        25.02         0.99         1.02 
TCGA-66-2769 TCGA-66-2773 TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        7.07         3.02         2.01        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 
        1.94        40.01        22.98         4.04         5.03        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
       54.08        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-7139 TCGA-77-7141 TCGA-77-7142 TCGA-77-7338 TCGA-77-8007 
        3.12        89.95         0.49        42.25         0.16         6.51 
TCGA-77-8139 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 
      104.09         9.63        55.33        35.90        23.44         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7950 
        0.79         1.12         0.33         1.61         1.15         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.45         1.78         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8666 TCGA-85-A4QR TCGA-90-7766 
        0.66         0.66         0.89         0.46         0.82         1.55 
TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 
        2.93         3.29        10.88         4.01         5.26         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-98-8021 TCGA-98-8022 
        0.16         4.70        39.88        44.15        13.58         7.33 
TCGA-98-8023 TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
       10.13        14.76        50.86        37.32 

$`5Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3419 TCGA-18-3421 TCGA-18-5592 TCGA-18-5595 
       12.16         4.47         1.61        43.76         3.02        27.16 
TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
       46.88        70.13        60.89        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-A5DI TCGA-22-1000 
        9.30         8.78        31.63        88.08        32.19        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 
       64.21         1.74        14.10        48.82        48.33        24.13 
TCGA-22-4596 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
        0.56        11.77         0.79        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 
       18.84        62.86        16.60       173.79       103.53       141.34 
TCGA-33-4589 TCGA-34-2596 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5240 
       10.98         2.63        51.78        32.68         9.04         7.73 
TCGA-34-5241 TCGA-34-5928 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 
       14.07         5.52         3.95         0.43         0.39         6.54 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 
        0.39         3.39        44.71        68.58        55.17         1.71 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5039 TCGA-39-5040 TCGA-43-3920 TCGA-43-5670 
       36.39        15.58        17.88        17.06        11.74        18.05 
TCGA-43-6143 TCGA-43-6771 TCGA-43-7658 TCGA-43-8115 TCGA-51-4080 TCGA-52-7812 
       12.36         5.42        66.51         6.64         0.39        27.45 
TCGA-56-6545 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-8503 TCGA-56-8504 
        2.04         0.43         0.99         1.32         1.35         5.82 
TCGA-56-8624 TCGA-56-8626 TCGA-58-8386 TCGA-58-8390 TCGA-58-8393 TCGA-58-A46N 
        1.18         0.56         0.03         8.94         0.66        17.72 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2712 TCGA-60-2715 
       12.23        10.22        96.82        37.94         9.01        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       48.49        42.61        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2744 TCGA-66-2754 TCGA-66-2758 TCGA-66-2765 TCGA-66-2767 
       11.77         0.99         2.01        20.98         2.01         2.01 
TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2778 TCGA-66-2783 TCGA-66-2786 
        2.01        23.01        19.00        19.00        24.95        25.97 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2795 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       22.98        30.02         4.01        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 
       23.28        11.18        20.78        70.09       106.95        46.78 
TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8144 TCGA-77-8156 
       15.75        86.76        53.95        82.92        27.39         0.33 
TCGA-77-A5GB TCGA-85-7696 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 
       30.81         0.59         0.03         1.25         0.85         1.97 
TCGA-85-8350 TCGA-85-8479 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A50M 
        1.97         0.72         0.13         0.10         0.46         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-7340 
        0.79         0.43        24.89         0.59         8.02         2.70 
TCGA-92-7341 TCGA-92-8065 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
        3.48         2.27         6.18         6.90         8.42         2.73 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30         1.15         1.18         3.02        56.61 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.03              0.03 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           119.80            173.79 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            10.85             12.16 
[1] "0.0 - 119.8 (10.9)" "0.0 - 173.8 (12.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "5Q LOSS MUTATED" 
[1] "hr=" "1.2"
D50V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  5Q LOSS MUTATED         0       41       80        1        24        25
  5Q LOSS WILD-TYPE       1       26       51        0        21        40
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  5Q LOSS MUTATED           38         14        4
  5Q LOSS WILD-TYPE         15          6        1
D50V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q LOSS MUTATED    56 136  24  13
  5Q LOSS WILD-TYPE  36 103  18   5
D50V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              56                36
  T2             136               103
  T3              24                18
  T4              13                 5
                   vv
clus                 N0  N1  N2  N3
  5Q LOSS MUTATED   151  53  22   2
  5Q LOSS WILD-TYPE  94  50  11   3
D50V5, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0             151                94
  N1              53                50
  N2              22                11
  N3               2                 3
                   vv
clus                 M0  M1  MX
  5Q LOSS MUTATED   191   4  32
  5Q LOSS WILD-TYPE 142   1  15
D50V6, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  M0             191               142
  M1               4                 1
  MX              32                15
D50V7, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    60 169
  5Q LOSS WILD-TYPE  38 124
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     60  169
  5Q LOSS WILD-TYPE   38  124
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              60                38
  MALE               169               124
D50V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                       8
  5Q LOSS WILD-TYPE                                     4
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  5Q LOSS MUTATED                                        2
  5Q LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  5Q LOSS MUTATED                                         1
  5Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q LOSS MUTATED                                                           218
  5Q LOSS WILD-TYPE                                                         155
D50V9, multiclass
                                                             clus
vv                                                            5Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             218
                                                             clus
vv                                                            5Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               155
D50V10, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED     9 220
  5Q LOSS WILD-TYPE   3 159
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      9  220
  5Q LOSS WILD-TYPE    3  159
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                9                 3
  YES             220               159
D50V11, continuous
D50V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q LOSS MUTATED   178   6   2  11
  5Q LOSS WILD-TYPE 139   1   2   7
D50V13, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  R0             178               139
  R1               6                 1
  R2               2                 2
  RX              11                 7

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    42  26
  6P LOSS WILD-TYPE 193  96
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               68               289 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               26                96 
$`6P LOSS MUTATED`
TCGA-18-3408 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 TCGA-18-4721 
       81.07        11.34        59.51        28.34         6.15        90.51 
TCGA-18-5592 TCGA-21-1076 TCGA-22-0940 TCGA-22-1012 TCGA-22-4596 TCGA-22-4599 
        3.02        60.89        19.99        14.10         0.56        38.17 
TCGA-22-4609 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5483 
        9.53        63.52        44.22         0.79        54.28        18.84 
TCGA-22-5492 TCGA-33-4547 TCGA-33-4583 TCGA-34-2596 TCGA-34-2604 TCGA-37-5819 
       16.60        43.10       141.34         2.63        31.50         3.39 
TCGA-39-5016 TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 TCGA-39-5037 TCGA-39-5039 
       74.07        68.58        60.76        36.39        35.70        17.88 
TCGA-43-6143 TCGA-43-8115 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-51-4081 
       12.36         6.64         2.93         9.96        10.65        29.95 
TCGA-56-7579 TCGA-56-7582 TCGA-56-7822 TCGA-56-8624 TCGA-56-A4ZK TCGA-58-8386 
        1.45         0.85         0.03         1.18         0.13         0.03 
TCGA-60-2698 TCGA-60-2707 TCGA-60-2722 TCGA-60-2726 TCGA-66-2758 TCGA-66-2780 
       10.22        21.70        29.85        11.77        20.98        12.03 
TCGA-66-2782 TCGA-66-2786 TCGA-66-2789 TCGA-66-2792 TCGA-66-2794 TCGA-68-7755 
       12.00        25.97         4.04        30.02        54.08         2.73 
TCGA-68-7756 TCGA-77-8007 TCGA-77-8009 TCGA-85-7698 TCGA-85-7950 TCGA-85-8070 
        6.64         6.51        53.95         1.61         1.97         1.41 
TCGA-85-8277 TCGA-85-8666 TCGA-90-7767 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 
        0.36         0.46         2.93         3.48         5.26         2.27 
TCGA-96-7544 TCGA-J1-A4AH 
       39.88         7.30 

$`6P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        79.46         4.80        46.52        13.02 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 
       24.92         1.61        43.76         2.79        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 
       29.85        21.73        10.82        32.19         7.33        14.93 
TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
        4.31        64.21         1.74        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       35.08        48.33        24.13        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5480 
       19.30        11.77        31.73        64.90        14.60        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 
       79.20        11.74        30.08        62.86        56.32         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4587 
      114.05        97.94       173.79       103.53        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
       10.98        19.76        26.99        61.61        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       31.23        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
        7.73        14.07        22.95         5.52         4.96         1.08 
TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        3.95         0.43         0.39         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 
        7.82         6.81         0.39        47.80        44.71        55.17 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 
       70.03         1.71        24.33         1.94        27.35        15.58 
TCGA-39-5036 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       35.64        17.06        24.59        22.49        13.12        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.74        11.47        18.05        12.46        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-6026 
        3.78         6.97         1.58        66.51         6.35        13.87 
TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39         0.39        17.79         5.42        30.31         8.75 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
       27.45        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7730 TCGA-56-8503 TCGA-56-8504 
        0.43         0.99         1.32         0.20         1.35         5.82 
TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        1.78         2.07         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        1.51         0.99         1.02         0.26        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
        8.94        44.09        16.47         0.66        34.36        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       17.72        21.07         3.58        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       92.71        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
       32.28        35.90        23.57        26.79        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         2.01         7.07        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
        2.01        19.00         3.98        24.95         1.94        40.01 
TCGA-66-2788 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 TCGA-66-2800 
       22.98        22.98         5.03        10.06         4.01        49.05 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       23.28        11.18        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 
       70.09       106.95         0.16        46.78        15.75        86.76 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       82.92       104.09        27.39         9.63        55.33        35.90 
TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        0.33        30.81        23.44         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.59         0.33         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        1.97         0.53         0.46         1.18         0.43         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 
        1.78         1.97         1.81         2.20         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66         0.89         0.13         0.10 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.82         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        1.55         0.59         3.29         8.02        10.88         2.70 
TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 
        4.01         2.86         0.16         4.70        44.15         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         8.42         2.73        13.58         7.33        10.13 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        1.15        14.76         1.18         3.02        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.03              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           141.34            173.79 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           11.885            11.740 
[1] "0.0 - 141.3 (11.9)" "0.0 - 173.8 (11.7)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
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"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"6P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D51V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6P LOSS MUTATED         0        9       27        0        11        20
  6P LOSS WILD-TYPE       1       58      104        1        34        45
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6P LOSS MUTATED            9          2        1
  6P LOSS WILD-TYPE         44         18        4
D51V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS MUTATED    17  47  13   2
  6P LOSS WILD-TYPE  75 192  29  16
D51V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1              17                75
  T2              47               192
  T3              13                29
  T4               2                16
                   vv
clus                 N0  N1  N2  N3
  6P LOSS MUTATED    43  29   4   1
  6P LOSS WILD-TYPE 202  74  29   4
D51V5, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0              43               202
  N1              29                74
  N2               4                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6P LOSS MUTATED    69   1   9
  6P LOSS WILD-TYPE 264   4  38
D51V6, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  M0              69               264
  M1               1                 4
  MX               9                38
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    17  62
  6P LOSS WILD-TYPE  81 231
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     17   62
  6P LOSS WILD-TYPE   81  231
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              17                81
  MALE                62               231
D51V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                       2
  6P LOSS WILD-TYPE                                    10
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6P LOSS MUTATED                                        1
  6P LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6P LOSS MUTATED                                         0
  6P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P LOSS MUTATED                                                            76
  6P LOSS WILD-TYPE                                                         297
D51V9, multiclass
                                                             clus
vv                                                            6P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              76
                                                             clus
vv                                                            6P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               297
D51V10, binary
                   cls
clus                  0   1
  6P LOSS MUTATED     1  78
  6P LOSS WILD-TYPE  11 301
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      1   78
  6P LOSS WILD-TYPE   11  301
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                1                11
  YES              78               301
D51V11, continuous
D51V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P LOSS MUTATED    67   1   0   7
  6P LOSS WILD-TYPE 250   6   4  11
D51V13, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  R0              67               250
  R1               1                 6
  R2               0                 4
  RX               7                11

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED    51  22
  6Q LOSS WILD-TYPE 184 100
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               73               284 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               22               100 
$`6Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-4083 
       81.07        46.52        11.34        59.51        28.34         6.15 
TCGA-18-5592 TCGA-21-1076 TCGA-21-5786 TCGA-22-0940 TCGA-22-4596 TCGA-22-4599 
        3.02        60.89        21.73        19.99         0.56        38.17 
TCGA-22-4601 TCGA-22-4607 TCGA-22-5478 TCGA-22-5479 TCGA-22-5492 TCGA-33-4582 
       34.75        19.30         0.79        54.28        16.60       103.53 
TCGA-33-4583 TCGA-34-2596 TCGA-34-2604 TCGA-34-5928 TCGA-37-5819 TCGA-39-5016 
      141.34         2.63        31.50         5.52         3.39        74.07 
TCGA-39-5021 TCGA-39-5027 TCGA-39-5034 TCGA-39-5037 TCGA-39-5039 TCGA-43-2581 
       68.58        60.76        36.39        35.70        17.88        13.12 
TCGA-43-6143 TCGA-43-8115 TCGA-43-8118 TCGA-46-6025 TCGA-51-4081 TCGA-52-7812 
       12.36         6.64         2.93        10.65        29.95        27.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8624 TCGA-56-8625 TCGA-56-A4BY TCGA-56-A4ZK 
        0.85         0.20         1.18         2.07         0.99         0.13 
TCGA-60-2707 TCGA-60-2722 TCGA-60-2726 TCGA-66-2758 TCGA-66-2763 TCGA-66-2773 
       21.70        29.85        11.77        20.98         0.99         3.02 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2783 TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 
       12.03        12.00        24.95        30.02         4.01         2.73 
TCGA-68-7756 TCGA-77-7141 TCGA-77-8007 TCGA-77-8009 TCGA-85-7698 TCGA-85-8052 
        6.64         0.49         6.51        53.95         1.61         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 TCGA-85-8354 TCGA-85-8479 TCGA-85-A4QR 
        1.41         1.18         0.36         2.01         0.72         0.82 
TCGA-85-A50M TCGA-90-7767 TCGA-92-7341 TCGA-92-8065 TCGA-96-7544 TCGA-J1-A4AH 
        0.62         2.93         3.48         2.27        39.88         7.30 
TCGA-NC-A5HG 
       50.86 

$`6Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3417 
       12.16         4.47        79.46         4.80        13.02        24.92 
TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 
        1.61        43.76         2.79        90.51        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        32.19         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4604 TCGA-22-4605 TCGA-22-4609 
       35.08        48.33        24.13        13.12        32.02         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.73        64.90        63.52        14.60        44.22 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32         7.63       114.05        97.94        43.10       173.79 
TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 
       14.07        54.44        10.98        19.76        26.99        61.61 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 
        9.04        10.82         7.73        14.07        22.95         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 
        7.46         7.82         6.81         0.39        47.80        44.71 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03         1.71        24.33         1.94        27.35 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       15.58        35.64        17.06        24.59        22.49        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.74        11.47        18.05        12.46        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-3768 
        3.78         6.97         1.58        66.51         6.35         9.96 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 
       13.87         0.39         0.39        17.79         5.42        30.31 
TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        28.93         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
        0.43         0.99         1.45         1.32         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D 
        5.82         1.78         0.56         0.53         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 
        1.51         1.02         0.26         0.03        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
        8.94        44.09        16.47         0.66        34.36        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       17.72        21.07         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        92.71        80.42        49.48        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
        9.01        56.91        50.33        35.34        48.49        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 
        3.16        32.28        35.90        23.57        26.79        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99         0.99        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         7.07        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       19.00         3.98         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
        4.04        22.98         5.03        10.06        54.08        49.05 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 
       23.28        11.18        89.95        20.78        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8130 
      106.95         0.16        46.78        15.75        86.76        82.92 
TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 
      104.09        27.39         9.63        55.33        35.90         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 
        1.97         0.46         0.43         1.45         1.78         1.97 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 
        1.81         2.20         1.78         0.66         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 TCGA-85-A53L 
        0.13         0.10         0.46         0.46         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         1.55         0.59         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        2.70         4.01         5.26         2.86         0.16         4.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.15         6.18         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
        7.33        10.13         1.15        14.76         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HI 
       56.61        37.32 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.13              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           141.34            173.79 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           11.340            11.755 
[1] "0.1 - 141.3 (11.3)" "0.0 - 173.8 (11.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-NC-A5HI 
"6Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-NC-A5HI 
"6Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D52V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  6Q LOSS MUTATED         0        8       30        0        14        19
  6Q LOSS WILD-TYPE       1       59      101        1        31        46
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  6Q LOSS MUTATED           11          2        0
  6Q LOSS WILD-TYPE         42         18        5
D52V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS MUTATED    14  56  11   3
  6Q LOSS WILD-TYPE  78 183  31  15
D52V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1              14                78
  T2              56               183
  T3              11                31
  T4               3                15
                   vv
clus                 N0  N1  N2  N3
  6Q LOSS MUTATED    50  27   5   1
  6Q LOSS WILD-TYPE 195  76  28   4
D52V5, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0              50               195
  N1              27                76
  N2               5                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  6Q LOSS MUTATED    74   0  10
  6Q LOSS WILD-TYPE 259   5  37
D52V6, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  M0              74               259
  M1               0                 5
  MX              10                37
D52V7, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    22  62
  6Q LOSS WILD-TYPE  76 231
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     22   62
  6Q LOSS WILD-TYPE   76  231
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              22                76
  MALE                62               231
D52V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                       3
  6Q LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  6Q LOSS MUTATED                                        2
  6Q LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  6Q LOSS MUTATED                                         0
  6Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q LOSS MUTATED                                                            79
  6Q LOSS WILD-TYPE                                                         294
D52V9, multiclass
                                                             clus
vv                                                            6Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              79
                                                             clus
vv                                                            6Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               294
D52V10, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED     1  83
  6Q LOSS WILD-TYPE  11 296
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED      1   83
  6Q LOSS WILD-TYPE   11  296
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO                1                11
  YES              83               296
D52V11, continuous
D52V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q LOSS MUTATED    69   1   1   6
  6Q LOSS WILD-TYPE 248   6   3  12
D52V13, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  R0              69               248
  R1               1                 6
  R2               1                 3
  RX               6                12

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    30  15
  7P LOSS WILD-TYPE 205 107
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               45               312 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               15               107 
$`7P LOSS MUTATED`
TCGA-18-3419 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1016 
        1.61         8.78        21.73        10.82        32.19        27.02 
TCGA-22-1017 TCGA-22-4601 TCGA-22-5492 TCGA-33-6738 TCGA-37-3789 TCGA-37-4133 
       48.82        34.75        16.60        26.99         0.43         7.82 
TCGA-37-5819 TCGA-39-5029 TCGA-39-5036 TCGA-43-2578 TCGA-43-6770 TCGA-46-6026 
        3.39        24.33        35.64        22.49        10.19        13.87 
TCGA-56-1622 TCGA-56-6546 TCGA-56-7580 TCGA-56-8629 TCGA-56-A49D TCGA-58-8386 
       28.93         1.02         1.32         1.12         0.99         0.03 
TCGA-58-8390 TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 TCGA-66-2757 TCGA-66-2773 
        8.94        21.07        96.82         9.01         0.99         3.02 
TCGA-66-2783 TCGA-66-2788 TCGA-66-2792 TCGA-66-2793 TCGA-77-7142 TCGA-77-7337 
       24.95        22.98        30.02        10.06        42.25       106.95 
TCGA-77-8144 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 TCGA-85-8070 TCGA-85-8277 
       27.39        23.44         0.36         0.03         1.41         0.36 
TCGA-85-8353 TCGA-90-7767 TCGA-J1-A4AH 
        1.78         2.93         7.30 

$`7P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 
       31.69       122.43         9.30       119.80        31.63        88.08 
TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       29.85        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
        1.74        14.10        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        38.17        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 
       11.77        31.73        64.90        63.52        14.60        44.22 
TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 
        0.79        54.28        71.34        79.20        11.74        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       30.08        62.86        56.32         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 
       43.10       173.79       103.53       141.34        14.07        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.39         6.54         8.09         7.46 
TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        6.81         0.39        47.80        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76         1.71         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        24.59 
TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       13.12        27.02        11.74        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       12.46         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
        6.64         6.35         2.93         9.96        10.65         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 
        0.39        29.95        17.79         5.42        30.31         8.75 
TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       27.45         0.10         2.04         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.45         0.85         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BX 
        1.78         1.18         2.07         0.56         0.53         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 
        0.99         1.02         0.13         0.26        13.25        12.43 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N 
       44.09        16.47         0.66        34.36        36.59        17.72 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        10.22        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       80.42        49.48        66.51        41.39        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
        2.01        21.07         0.99         1.02         2.01         0.92 
TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99        20.98        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 
        2.01         2.01         7.07        23.01        19.00         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
       19.00        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 
       40.01         4.04        22.98         5.03        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
       20.78         0.49        70.09         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 
        6.51        86.76        53.95        82.92       104.09         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 
       55.33        35.90         0.33        30.81         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         1.61         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53         0.46         1.18         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 
        1.45         1.78         1.97         1.81         2.20         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.46         0.46         0.82         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         1.55         0.59         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-L3-A4E7 
        8.42         2.73        13.58         7.33        10.13         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         1.18         3.02        56.61        50.86        37.32 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.03              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
           106.95            173.79 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            10.19             11.77 
[1] "0.0 - 107.0 (10.2)" "0.0 - 173.8 (11.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "7P LOSS MUTATED"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
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"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D53V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7P LOSS MUTATED         1        5       14        0         5         8
  7P LOSS WILD-TYPE       0       62      117        1        40        57
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7P LOSS MUTATED           12          3        1
  7P LOSS WILD-TYPE         41         17        4
D53V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     9  33   3   4
  7P LOSS WILD-TYPE  83 206  39  14
D53V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               9                83
  T2              33               206
  T3               3                39
  T4               4                14
                   vv
clus                 N0  N1  N2  N3
  7P LOSS MUTATED    27  13   7   1
  7P LOSS WILD-TYPE 218  90  26   4
D53V5, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0              27               218
  N1              13                90
  N2               7                26
  N3               1                 4
                   vv
clus                 M0  M1  MX
  7P LOSS MUTATED    40   1   7
  7P LOSS WILD-TYPE 293   4  40
D53V6, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  M0              40               293
  M1               1                 4
  MX               7                40
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     9  40
  7P LOSS WILD-TYPE  89 253
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      9   40
  7P LOSS WILD-TYPE   89  253
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE               9                89
  MALE                40               253
D53V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                       1
  7P LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7P LOSS MUTATED                                        0
  7P LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7P LOSS MUTATED                                         0
  7P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P LOSS MUTATED                                                            48
  7P LOSS WILD-TYPE                                                         325
D53V9, multiclass
                                                             clus
vv                                                            7P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              48
                                                             clus
vv                                                            7P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               325
D53V10, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     2  47
  7P LOSS WILD-TYPE  10 332
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      2   47
  7P LOSS WILD-TYPE   10  332
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                2                10
  YES              47               332
D53V11, continuous
D53V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P LOSS MUTATED    44   0   2   1
  7P LOSS WILD-TYPE 273   7   2  17
D53V13, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  R0              44               273
  R1               0                 7
  R2               2                 2
  RX               1                17

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    26  14
  7Q LOSS WILD-TYPE 209 108
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               40               317 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               14               108 
$`7Q LOSS MUTATED`
TCGA-18-3419 TCGA-21-1082 TCGA-21-1083 TCGA-21-5786 TCGA-22-1016 TCGA-22-1017 
        1.61       119.80         8.78        21.73        27.02        48.82 
TCGA-22-5481 TCGA-22-5482 TCGA-37-3789 TCGA-37-5819 TCGA-39-5029 TCGA-43-2578 
       79.20        11.74         0.43         3.39        24.33        22.49 
TCGA-43-2581 TCGA-43-6770 TCGA-43-6771 TCGA-46-6026 TCGA-56-1622 TCGA-56-6546 
       13.12        10.19         5.42        13.87        28.93         1.02 
TCGA-56-7580 TCGA-56-8629 TCGA-56-A49D TCGA-60-2695 TCGA-60-2703 TCGA-60-2712 
        1.32         1.12         0.99        21.07        96.82         9.01 
TCGA-66-2754 TCGA-66-2773 TCGA-66-2788 TCGA-77-7138 TCGA-77-8139 TCGA-77-8144 
        2.01         3.02        22.98        11.18       104.09        27.39 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-7699 TCGA-85-8048 TCGA-85-8353 
       30.81        23.44         0.36         0.03         0.85         1.78 
TCGA-85-A513 TCGA-90-7767 TCGA-98-8022 TCGA-J1-A4AH 
        0.79         2.93         7.33         7.30 

$`7Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 
       11.34        13.02        59.51        28.34        24.92        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.69       122.43         9.30        31.63        88.08        29.85 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       10.82        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       64.21         1.74        14.10        20.45        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5483 
       14.60        44.22         0.79        54.28        71.34        18.84 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 TCGA-37-4129 
        5.52         4.96         1.08         3.95         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        8.09         7.46         7.82         6.81         0.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-3394 TCGA-43-3920 
       35.70        17.88        17.06        24.59        27.02        11.74 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6773 TCGA-43-7656 
       11.47        18.05        12.36        12.46         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        1.58        66.51         6.64         6.35         2.93         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       10.65         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 
       30.31         8.75        27.45         0.10         2.04         0.99 
TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        0.43         0.99         1.45         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        1.35         5.82         1.78         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.53         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43         8.94        44.09        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
        0.66        34.36        36.59        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       10.22        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 
       66.51        41.39        56.91        50.33        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       42.61         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        7.07        23.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 
        3.12        29.56        73.08        75.09        23.28        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
       46.78        15.75         6.51        86.76        53.95        82.92 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 
        9.63        55.33        35.90         0.33         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         0.33         1.61         1.15         1.25         1.97 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66         0.89         0.13 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L 
        0.10         0.46         0.46         0.82         0.62         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-90-A4EE 
       24.89         1.55         0.59         3.29         8.02        10.88 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-L3-A4E7 TCGA-L3-A524 
        8.42         2.73        13.58        10.13         1.15        14.76 
TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.18         3.02        56.61        50.86        37.32 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.03              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           119.80            173.79 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
              9.6              12.0 
[1] "0.0 - 119.8 (9.6)"  "0.0 - 173.8 (12.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7Q LOSS WILD-TYPE" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
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"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
"7Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D54V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  7Q LOSS MUTATED         0        7       16        0         4         9
  7Q LOSS WILD-TYPE       1       60      115        1        41        56
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  7Q LOSS MUTATED            8          0        0
  7Q LOSS WILD-TYPE         45         20        5
D54V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED     8  32   3   1
  7Q LOSS WILD-TYPE  84 207  39  17
D54V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1               8                84
  T2              32               207
  T3               3                39
  T4               1                17
                   vv
clus                 N0  N1  N2  N3
  7Q LOSS MUTATED    26  12   4   0
  7Q LOSS WILD-TYPE 219  91  29   5
D54V5, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0              26               219
  N1              12                91
  N2               4                29
  N3               0                 5
                   vv
clus                 M0  M1  MX
  7Q LOSS MUTATED    36   0   7
  7Q LOSS WILD-TYPE 297   5  40
D54V6, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  M0              36               297
  M1               0                 5
  MX               7                40
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    10  34
  7Q LOSS WILD-TYPE  88 259
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     10   34
  7Q LOSS WILD-TYPE   88  259
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE              10                88
  MALE                34               259
D54V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                       1
  7Q LOSS WILD-TYPE                                    11
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  7Q LOSS MUTATED                                        0
  7Q LOSS WILD-TYPE                                      5
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  7Q LOSS MUTATED                                         0
  7Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q LOSS MUTATED                                                            43
  7Q LOSS WILD-TYPE                                                         330
D54V9, multiclass
                                                             clus
vv                                                            7Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              43
                                                             clus
vv                                                            7Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               330
D54V10, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     1  43
  7Q LOSS WILD-TYPE  11 336
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   43
  7Q LOSS WILD-TYPE   11  336
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                11
  YES              43               336
D54V11, continuous
D54V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q LOSS MUTATED    40   0   1   2
  7Q LOSS WILD-TYPE 277   7   3  16
D54V13, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  R0              40               277
  R1               0                 7
  R2               1                 3
  RX               2                16

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED   110  60
  8P LOSS WILD-TYPE 125  62
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              170               187 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               60                62 
$`8P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3412 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-4721 
       12.16        11.34        59.51         1.61         6.15        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 
        3.02        27.16        99.16        60.89       122.43         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-22-1000 TCGA-22-1002 TCGA-22-1017 TCGA-22-4591 
       31.63        21.73        14.93         4.31        48.82        20.45 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4609 TCGA-22-4613 
       48.33        38.17        34.75        13.12         9.53        11.77 
TCGA-22-5471 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 
       31.73        44.22         0.79        71.34        79.20        18.84 
TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       30.08        56.32        16.60        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2609 
       14.07        10.98        26.99         2.63        61.61        31.23 
TCGA-34-5236 TCGA-34-5241 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4135 
        9.04        14.07         3.95         0.43         0.39         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5031 
        0.39        47.80        44.71        68.58        60.76        27.35 
TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 
       35.70        17.88        24.59        13.12        11.47        12.36 
TCGA-43-6770 TCGA-43-6771 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
       10.19         5.42         1.58         6.64         6.35         2.93 
TCGA-46-3768 TCGA-46-6025 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
        9.96        10.65         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7812 TCGA-56-5897 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
       30.31        27.45         0.10         0.43         0.99         1.45 
TCGA-56-7580 TCGA-56-8504 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        1.32         5.82         0.56         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K 
        0.99         0.26         8.94        16.47         0.66        34.36 
TCGA-58-A46L TCGA-60-2698 TCGA-60-2703 TCGA-60-2711 TCGA-60-2713 TCGA-60-2721 
       36.59        10.22        96.82        41.39        56.91        32.28 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 
       11.77        16.96        43.10         2.01         1.02         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 
        0.92         0.99        25.02         1.02         2.01         7.07 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 
       12.03         3.98        12.00        24.95         1.94        40.01 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7755 TCGA-68-8250 
       22.98         5.03        30.02         4.01         2.73         8.02 
TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7337 TCGA-77-7338 
       29.56        75.09        23.28        11.18       106.95         0.16 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
       86.76        53.95        82.92       104.09        27.39         9.63 
TCGA-77-8154 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 
       35.90         0.79         1.12         0.59         0.33         1.61 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8070 TCGA-85-8276 
        1.15         1.25         1.97         0.85         1.41         0.43 
TCGA-85-8277 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-A4QR 
        0.36         1.97         2.20         1.78         2.01         0.82 
TCGA-85-A50M TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-A4ED TCGA-92-7341 
        0.62         0.43         1.55         2.93         8.02         3.48 
TCGA-92-8063 TCGA-94-7557 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-8020 
        4.01         0.16        39.88        44.15         6.90         2.73 
TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       13.58         7.33         7.30         1.18         3.02        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

$`8P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
        4.47        81.07        79.46         4.80        46.52        13.02 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-21-1070 TCGA-21-1071 
       28.34        24.92        43.76         2.79       119.54        46.88 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 
       70.13        34.78        15.55        31.69         9.30       119.80 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 
       88.08        29.85        10.82        32.19        19.99         7.33 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4595 
       64.21         1.74        14.10        27.02        35.08        24.13 
TCGA-22-4596 TCGA-22-4605 TCGA-22-4607 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        0.56        32.02        19.30        64.90        63.52        14.60 
TCGA-22-5479 TCGA-22-5482 TCGA-22-5489 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       54.28        11.74        62.86         7.63       114.05        97.94 
TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
      141.34        54.44        19.76        31.50        28.96        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 
       50.24        51.78        32.68        10.82         7.73        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        5.52         4.96         1.08         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 
        7.82         3.39        74.07        55.17        70.03         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5040 
       24.33         1.94        36.39        15.58        35.64        17.06 
TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6773 
       22.49        27.02        11.74        18.05        12.46         3.78 
TCGA-43-7656 TCGA-43-7658 TCGA-46-6026 TCGA-51-4079 TCGA-52-7811 TCGA-56-1622 
        6.97        66.51        13.87         0.39         8.75        28.93 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        2.04         1.02         0.99         0.85         0.20         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-A49D TCGA-56-A4ZJ 
        1.35         1.78         1.18         2.07         0.99         1.02 
TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 TCGA-58-A46N 
        0.13         0.03        13.25        12.43        44.09        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
       21.07         3.58        12.23        37.94        92.71        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2714 TCGA-60-2715 
       80.42        49.48        66.51         9.01        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       48.49        42.61         3.16        29.85        35.90        23.57 
TCGA-60-2725 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 
       26.79        21.07         0.99         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 TCGA-66-2794 
       19.00        25.97        22.98         4.04        10.06        54.08 
TCGA-66-2800 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-7139 
       49.05         6.64         6.94         3.12        73.08        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7463 TCGA-77-7465 
       20.78         0.49        42.25        70.09        46.78        15.75 
TCGA-77-8007 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
        6.51        55.33         0.33        30.81        23.44         0.36 
TCGA-85-7699 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 
        0.03         1.97         0.53         0.46         1.18         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         1.81         0.66         0.72         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A513 TCGA-90-6837 
        0.13         0.10         0.46         0.46         0.79        24.89 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-92-8065 
        0.59         3.29        10.88         2.70         5.26         2.27 
TCGA-94-7033 TCGA-94-7943 TCGA-96-8169 TCGA-98-7454 TCGA-98-8023 TCGA-L3-A4E7 
        2.86         4.70         6.18         8.42        10.13         1.15 
TCGA-L3-A524 
       14.76 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.10              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           173.79            141.34 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           10.435            13.250 
[1] "0.1 - 173.8 (10.4)" "0.0 - 141.3 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "8P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "8P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "8P LOSS MUTATED" 
[1] "hr=" "1.1"
D55V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8P LOSS MUTATED         0       39       55        0        24        31
  8P LOSS WILD-TYPE       1       28       76        1        21        34
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8P LOSS MUTATED           28          8        0
  8P LOSS WILD-TYPE         25         12        5
D55V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P LOSS MUTATED    48 108  24   6
  8P LOSS WILD-TYPE  44 131  18  12
D55V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              48                44
  T2             108               131
  T3              24                18
  T4               6                12
                   vv
clus                 N0  N1  N2  N3
  8P LOSS MUTATED   117  50  17   2
  8P LOSS WILD-TYPE 128  53  16   3
D55V5, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0             117               128
  N1              50                53
  N2              17                16
  N3               2                 3
                   vv
clus                 M0  M1  MX
  8P LOSS MUTATED   157   0  26
  8P LOSS WILD-TYPE 176   5  21
D55V6, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  M0             157               176
  M1               0                 5
  MX              26                21
D55V7, binary
                   cls
clus                  0   1
  8P LOSS MUTATED    39 147
  8P LOSS WILD-TYPE  59 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED     39  147
  8P LOSS WILD-TYPE   59  146
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE              39                59
  MALE               147               146
D55V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                       6
  8P LOSS WILD-TYPE                                     6
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8P LOSS MUTATED                                        2
  8P LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8P LOSS MUTATED                                         0
  8P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P LOSS MUTATED                                                           178
  8P LOSS WILD-TYPE                                                         195
D55V9, multiclass
                                                             clus
vv                                                            8P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             178
                                                             clus
vv                                                            8P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               195
D55V10, binary
                   cls
clus                  0   1
  8P LOSS MUTATED     4 182
  8P LOSS WILD-TYPE   8 197
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      4  182
  8P LOSS WILD-TYPE    8  197
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                4                 8
  YES             182               197
D55V11, continuous
D55V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P LOSS MUTATED   149   5   2   9
  8P LOSS WILD-TYPE 168   2   2   9
D55V13, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  R0             149               168
  R1               5                 2
  R2               2                 2
  RX               9                 9

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    26   7
  8Q LOSS WILD-TYPE 209 115
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               33               324 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                7               115 
$`8Q LOSS MUTATED`
TCGA-21-1072 TCGA-22-5483 TCGA-33-4586 TCGA-33-6738 TCGA-37-3792 TCGA-37-4135 
       99.16        18.84        14.07        26.99         0.39         6.81 
TCGA-37-4141 TCGA-39-5011 TCGA-39-5019 TCGA-43-6143 TCGA-43-6771 TCGA-46-6025 
        0.39        47.80        44.71        12.36         5.42        10.65 
TCGA-52-7809 TCGA-56-7580 TCGA-56-7730 TCGA-56-8629 TCGA-58-A46K TCGA-66-2727 
        5.42         1.32         0.20         1.12        34.36        16.96 
TCGA-66-2766 TCGA-66-2791 TCGA-77-8144 TCGA-77-8154 TCGA-85-6561 TCGA-85-7844 
        1.02         5.03        27.39        35.90         0.79         1.25 
TCGA-85-8276 TCGA-85-8352 TCGA-85-A50M TCGA-85-A53L TCGA-90-7766 TCGA-90-A4ED 
        0.43         2.20         0.62         0.43         1.55         8.02 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        3.02        56.61        37.32 

$`8Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 
       11.34        13.02        59.51        28.34        24.92         1.61 
TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       43.76         6.15         2.79        90.51         3.02        27.16 
TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
      119.54        46.88        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.08        29.85        21.73        10.82        32.19        19.99 
TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
        7.33        14.93         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 
       27.02        48.82        20.45        35.08        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
        0.56        38.17        34.75        13.12        32.02        19.30 
TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 
        9.53        11.77        31.73        64.90        63.52        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       44.22         0.79        54.28        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       30.08        62.86        56.32        16.60         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4587 
       97.94        43.10       173.79       103.53       141.34        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       10.98        19.76         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 
       32.84        31.23        50.24        51.78        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       10.82         7.73        14.07        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 
        1.08         3.95         0.43         6.54         8.09         7.46 
TCGA-37-4133 TCGA-37-5819 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        7.82         3.39        74.07        68.58        55.17        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       60.76         1.71        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       15.58        35.64        35.70        17.88        17.06        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 
       22.49        13.12        27.02        11.74        11.47        18.05 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       12.46        10.19         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         2.93         9.96        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95        17.79        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.99         1.45         0.85         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A49D 
        1.78         1.18         2.07         0.56         0.53         0.99 
TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        1.51         0.99         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43         8.94        44.09        16.47         0.66 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 
       36.59        17.72        21.07         3.58        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.51        41.39         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       48.49        42.61         3.16        32.28        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       23.57        26.79        11.77        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 
        0.99         1.02         2.01         0.92         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         0.99         2.01         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04        22.98        30.02        10.06 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 TCGA-77-8153 TCGA-77-8156 
       53.95        82.92       104.09         9.63        55.33         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 
       30.81        23.44         0.36         1.12         0.59         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.15         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 
        0.53         1.41         0.46         1.18         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66         0.89         0.13         0.10         0.46 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 
        0.46         0.82         0.79        24.89         2.93         0.59 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        3.29        10.88         2.70         3.48         4.01         5.26 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        2.27         2.86         0.16         4.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.18         6.90         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HG 
       10.13         7.30         1.15        14.76         1.18        50.86 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.20              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            99.16            173.79 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            5.420            12.015 
[1] "0.2 - 99.2 (5.4)"   "0.0 - 173.8 (12.0)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "8Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "8Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-NC-A5HI 
  "8Q LOSS MUTATED" 
[1] "hr=" "1.2"
D56V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  8Q LOSS MUTATED         0        4       12        0         9         4
  8Q LOSS WILD-TYPE       1       63      119        1        36        61
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  8Q LOSS MUTATED            5          2        0
  8Q LOSS WILD-TYPE         48         18        5
D56V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED     7  27   2   0
  8Q LOSS WILD-TYPE  85 212  40  18
D56V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1               7                85
  T2              27               212
  T3               2                40
  T4               0                18
                   vv
clus                 N0  N1  N2  N3
  8Q LOSS MUTATED    23   8   4   1
  8Q LOSS WILD-TYPE 222  95  29   4
D56V5, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0              23               222
  N1               8                95
  N2               4                29
  N3               1                 4
                   vv
clus                 M0  M1  MX
  8Q LOSS MUTATED    30   0   6
  8Q LOSS WILD-TYPE 303   5  41
D56V6, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  M0              30               303
  M1               0                 5
  MX               6                41
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     5  31
  8Q LOSS WILD-TYPE  93 262
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      5   31
  8Q LOSS WILD-TYPE   93  262
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE               5                93
  MALE                31               262
D56V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                       3
  8Q LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  8Q LOSS MUTATED                                        1
  8Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  8Q LOSS MUTATED                                         0
  8Q LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q LOSS MUTATED                                                            32
  8Q LOSS WILD-TYPE                                                         341
D56V9, multiclass
                                                             clus
vv                                                            8Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              32
                                                             clus
vv                                                            8Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               341
D56V10, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     0  36
  8Q LOSS WILD-TYPE  12 343
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      0   36
  8Q LOSS WILD-TYPE   12  343
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                0                12
  YES              36               343
D56V11, continuous
D56V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q LOSS MUTATED    27   1   0   3
  8Q LOSS WILD-TYPE 290   6   4  15
D56V13, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  R0              27               290
  R1               1                 6
  R2               0                 4
  RX               3                15

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED   146  75
  9P LOSS WILD-TYPE  89  47
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              221               136 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               75                47 
$`9P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16        79.46        46.52        11.34        13.02        59.51 
TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-21-1070 
       24.92         1.61         6.15         2.79         3.02       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 TCGA-21-1082 
       46.88        99.16        70.13        34.78       122.43       119.80 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1002 
        8.78        88.08        21.73        10.82        32.19         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        27.02        20.45        35.08 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4601 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       48.33        38.17        34.75        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5482 
       31.73        64.90        14.60        44.22         0.79        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 
       18.84        30.08        56.32        97.94        43.10       103.53 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       19.76        26.99         2.63        61.61        31.50        28.96 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5241 TCGA-34-5927 
       32.84        31.23        50.24        51.78        14.07        22.95 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 
        4.96         0.43         8.09         6.81         0.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       74.07        44.71        60.76         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 TCGA-43-3394 
       27.35        36.39        15.58        17.06        24.59        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-7656 
       11.74        11.47        12.46        10.19         5.42         6.97 
TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6026 
        1.58         6.64         6.35         2.93         9.96        13.87 
TCGA-51-4081 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       29.95         5.42        30.31        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        1.02         0.99         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 
        0.85         0.20         0.03         1.35         1.78         1.18 
TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        2.07         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        1.02         0.26        13.25         8.94        44.09        16.47 
TCGA-58-8393 TCGA-58-A46L TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 
        0.66        36.59         3.58        10.22        96.82        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2711 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       21.70        80.42        41.39        42.61         3.16        32.28 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
       21.07         1.02         0.92        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 
        1.02         2.01         7.07        19.00         3.02        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2788 
       12.03         3.98        12.00         1.94        25.97        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 
        4.04        22.98        10.06         6.94         3.12        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       75.09        23.28         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8144 
        0.16        46.78        86.76        53.95        82.92        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 
        9.63        55.33        35.90        23.44         0.36         0.59 
TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         0.03         1.15         1.25         1.97         0.85 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8479 
        1.45         1.78         1.97         1.81         2.20         0.72 
TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
        0.89         0.10         0.46         0.46         0.82         0.62 
TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 
        0.43         1.55         2.93         3.29        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        3.48         4.01         2.27         2.86         0.16         4.70 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
       44.15         6.18         6.90         2.73        13.58         7.33 
TCGA-98-8023 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
       10.13        14.76         3.02        50.86        37.32 

$`9P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3416 TCGA-18-3421 TCGA-18-4721 
        4.47        81.07         4.80        28.34        43.76        90.51 
TCGA-18-5595 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 
       27.16        60.89        15.55        31.69         9.30        31.63 
TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1017 TCGA-22-4595 
       29.85        19.99         7.33        14.93        48.82        24.13 
TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-5473 TCGA-22-5479 TCGA-22-5480 
        0.56        13.12        32.02        63.52        54.28        71.34 
TCGA-22-5481 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4566 
       79.20        62.86        16.60         7.63       114.05       173.79 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-34-5234 TCGA-34-5236 
      141.34        14.07        54.44        10.98        32.68         9.04 
TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
       10.82         7.73         5.52         1.08         3.95         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 
        6.54         7.46         7.82         3.39        68.58        55.17 
TCGA-39-5024 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-2581 
       70.03        35.64        35.70        17.88        22.49        13.12 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6773 TCGA-43-7658 TCGA-46-6025 TCGA-51-4079 
       18.05        12.36         3.78        66.51        10.65         0.39 
TCGA-51-4080 TCGA-52-7622 TCGA-52-7811 TCGA-52-7812 TCGA-56-8504 TCGA-56-A4BY 
        0.39        17.79         8.75        27.45         5.82         0.99 
TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8388 TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 
        0.13         0.03        12.43        34.36        17.72        21.07 
TCGA-60-2697 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       12.23        37.94        49.48        66.51         9.01        56.91 
TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2722 TCGA-60-2723 TCGA-66-2744 
       50.33        35.34        48.49        29.85        35.90         0.99 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2767 TCGA-66-2770 
        2.01         0.99         0.99        20.98         2.01        23.01 
TCGA-66-2777 TCGA-66-2783 TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 
        2.01        24.95        40.01         5.03        30.02        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-77-6842 
        4.01        49.05         2.73         6.64         8.02        29.56 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7465 TCGA-77-8007 TCGA-77-8139 
       11.18        89.95        20.78        15.75         6.51       104.09 
TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 TCGA-85-8049 
        0.33        30.81         0.79         1.12         1.61         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        0.53         1.41         0.46         1.18         0.43         0.36 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 TCGA-85-A513 
        1.78         2.01         0.66         0.66         0.13         0.79 
TCGA-90-6837 TCGA-90-7769 TCGA-90-A4ED TCGA-92-8064 TCGA-96-7544 TCGA-98-7454 
       24.89         0.59         8.02         5.26        39.88         8.42 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-NC-A5HE 
        7.30         1.15         1.18        56.61 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.03 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           122.43            173.79 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           11.340            12.775 
[1] "0.0 - 122.4 (11.3)" "0.0 - 173.8 (12.8)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9P LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
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  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
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"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
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"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9P LOSS MUTATED" 
[1] "hr=" "1.1"
D57V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9P LOSS MUTATED         1       47       81        0        28        37
  9P LOSS WILD-TYPE       0       20       50        1        17        28
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9P LOSS MUTATED           37          8        3
  9P LOSS WILD-TYPE         16         12        2
D57V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P LOSS MUTATED    62 148  25  10
  9P LOSS WILD-TYPE  30  91  17   8
D57V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              62                30
  T2             148                91
  T3              25                17
  T4              10                 8
                   vv
clus                 N0  N1  N2  N3
  9P LOSS MUTATED   159  61  22   2
  9P LOSS WILD-TYPE  86  42  11   3
D57V5, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0             159                86
  N1              61                42
  N2              22                11
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9P LOSS MUTATED   207   3  32
  9P LOSS WILD-TYPE 126   2  15
D57V6, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  M0             207               126
  M1               3                 2
  MX              32                15
D57V7, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    63 182
  9P LOSS WILD-TYPE  35 111
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     63  182
  9P LOSS WILD-TYPE   35  111
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE              63                35
  MALE               182               111
D57V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                       5
  9P LOSS WILD-TYPE                                     7
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9P LOSS MUTATED                                        2
  9P LOSS WILD-TYPE                                      3
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9P LOSS MUTATED                                         0
  9P LOSS WILD-TYPE                                       1
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P LOSS MUTATED                                                           238
  9P LOSS WILD-TYPE                                                         135
D57V9, multiclass
                                                             clus
vv                                                            9P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             238
                                                             clus
vv                                                            9P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               135
D57V10, binary
                   cls
clus                  0   1
  9P LOSS MUTATED     8 237
  9P LOSS WILD-TYPE   4 142
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED      8  237
  9P LOSS WILD-TYPE    4  142
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO                8                 4
  YES             237               142
D57V11, continuous
D57V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P LOSS MUTATED   195   5   3  13
  9P LOSS WILD-TYPE 122   2   1   5
D57V13, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  R0             195               122
  R1               5                 2
  R2               3                 1
  RX              13                 5

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED   115  51
  9Q LOSS WILD-TYPE 120  71
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              166               191 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               51                71 
$`9Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-4083 
       12.16        79.46        13.02        24.92         1.61         6.15 
TCGA-21-1070 TCGA-21-1075 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5786 
      119.54        70.13       119.80         8.78        31.63        21.73 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 
       10.82        32.19         4.31        64.21         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4607 
       27.02        48.82        20.45        35.08        48.33        19.30 
TCGA-22-5474 TCGA-22-5478 TCGA-22-5482 TCGA-33-4532 TCGA-33-4547 TCGA-33-4582 
       14.60         0.79        11.74         7.63        43.10       103.53 
TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       54.44        19.76        26.99        31.50        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       50.24        51.78        14.07        22.95         5.52         4.96 
TCGA-37-4130 TCGA-37-4135 TCGA-37-4141 TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 
        8.09         6.81         0.39        47.80        74.07        44.71 
TCGA-39-5024 TCGA-39-5028 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 
       70.03         1.71        27.35        36.39        15.58        35.70 
TCGA-43-2576 TCGA-43-3920 TCGA-43-6647 TCGA-43-6771 TCGA-43-7656 TCGA-43-7657 
       24.59        11.74        12.46         5.42         6.97         1.58 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-6026 TCGA-51-4081 TCGA-52-7810 
        6.64         6.35         2.93        13.87        29.95        30.31 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 
       28.93         0.10         2.04         1.02         0.99         0.43 
TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 TCGA-56-8622 
        0.99         1.45         1.32         0.03         1.35         1.78 
TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4ZJ 
        1.18         0.56         0.53         1.12         0.99         1.02 
TCGA-56-A5DS TCGA-58-8390 TCGA-58-8392 TCGA-58-8393 TCGA-60-2696 TCGA-60-2698 
        0.26         8.94        16.47         0.66         3.58        10.22 
TCGA-60-2703 TCGA-60-2706 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2719 
       96.82        92.71        80.42         9.01        50.33        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
        3.16        32.28        23.57        26.79        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2753 TCGA-66-2755 TCGA-66-2763 TCGA-66-2769 
        2.01        21.07         1.02         0.92         0.99         7.07 
TCGA-66-2771 TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
       19.00         3.02        19.00        12.03         3.98        12.00 
TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-68-7757 
        1.94        22.98         4.04        22.98        10.06         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 
        8.02         3.12        29.56        73.08        75.09        23.28 
TCGA-77-7463 TCGA-77-8008 TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 TCGA-77-8154 
       46.78        86.76        82.92       104.09         9.63        35.90 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7843 TCGA-85-8048 TCGA-85-8287 
       23.44         0.36         0.33         1.15         0.85         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8664 TCGA-85-8666 
        1.78         1.97         1.81         2.20         0.10         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 
        0.82         0.62         0.43         1.55         2.93         3.29 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
       10.88         2.70         3.48         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-98-8022 
        4.70        39.88         6.18         6.90         2.73         7.33 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-NC-A5HG TCGA-NC-A5HI 
       10.13         1.15        50.86        37.32 

$`9Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3415 
        4.47        81.07         4.80        46.52        11.34        59.51 
TCGA-18-3416 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 
       28.34        43.76         2.79        90.51         3.02        27.16 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 TCGA-22-0944 
      122.43         9.30        88.08        29.85        19.99         7.33 
TCGA-22-1000 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       14.93        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       32.02         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5483 TCGA-22-5485 
       44.22        54.28        71.34        79.20        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       62.86        56.32        16.60       114.05        97.94       173.79 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
      141.34        14.07        10.98         2.63        61.61        28.96 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-7107 TCGA-37-3783 
       32.68         9.04        10.82         7.73         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 
        0.43         0.39         6.54         7.46         7.82         3.39 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5036 
       68.58        55.17        60.76        24.33         1.94        35.64 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 
       17.88        17.06        22.49        13.12        27.02        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 TCGA-43-6773 TCGA-43-7658 TCGA-46-3768 
       18.05        12.36        10.19         3.78        66.51         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
       10.65         0.39         0.39        17.79         5.42         8.75 
TCGA-52-7812 TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8625 TCGA-56-A4BX 
       27.45         0.85         0.20         5.82         2.07         1.51 
TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8391 
        0.99         0.13         0.03        13.25        12.43        44.09 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2704 
       34.36        36.59        17.72        21.07        12.23        37.94 
TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 
       21.70        49.48        66.51        41.39        56.91        35.34 
TCGA-60-2716 TCGA-60-2722 TCGA-60-2723 TCGA-66-2727 TCGA-66-2744 TCGA-66-2754 
       48.49        29.85        35.90        16.96         0.99         2.01 
TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        20.98        25.02         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2777 TCGA-66-2783 TCGA-66-2786 
        2.01         2.01        23.01         2.01        24.95        25.97 
TCGA-66-2787 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       40.01         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
        2.73         6.64        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09       106.95         0.16        15.75         6.51 
TCGA-77-8009 TCGA-77-8144 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 
       53.95        27.39        55.33         0.33        30.81         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
        1.12         0.59         1.61         0.03         1.25         1.97 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.97         0.53         1.41         0.46         1.18         0.43 
TCGA-85-8277 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        0.36         1.78         2.01         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 
        0.89         0.13         0.46         0.79        24.89         0.59 
TCGA-90-A4ED TCGA-92-8063 TCGA-92-8064 TCGA-96-7545 TCGA-98-7454 TCGA-98-8021 
        8.02         4.01         5.26        44.15         8.42        13.58 
TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
        7.30        14.76         1.18         3.02        56.61 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.03              0.03 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           119.80            173.79 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            9.845            13.250 
[1] "0.0 - 119.8 (9.8)"  "0.0 - 173.8 (13.2)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9Q LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-NC-A5HI 
  "9Q LOSS MUTATED" 
[1] "hr=" "1"  
D58V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  9Q LOSS MUTATED         1       36       56        0        22        34
  9Q LOSS WILD-TYPE       0       31       75        1        23        31
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  9Q LOSS MUTATED           23          6        3
  9Q LOSS WILD-TYPE         30         14        2
D58V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED    47 111  21   5
  9Q LOSS WILD-TYPE  45 128  21  13
D58V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              47                45
  T2             111               128
  T3              21                21
  T4               5                13
                   vv
clus                 N0  N1  N2  N3
  9Q LOSS MUTATED   116  53  12   2
  9Q LOSS WILD-TYPE 129  50  21   3
D58V5, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0             116               129
  N1              53                50
  N2              12                21
  N3               2                 3
                   vv
clus                 M0  M1  MX
  9Q LOSS MUTATED   150   3  29
  9Q LOSS WILD-TYPE 183   2  18
D58V6, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  M0             150               183
  M1               3                 2
  MX              29                18
D58V7, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED    48 136
  9Q LOSS WILD-TYPE  50 157
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED     48  136
  9Q LOSS WILD-TYPE   50  157
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE              48                50
  MALE               136               157
D58V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                       3
  9Q LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  9Q LOSS MUTATED                                        1
  9Q LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  9Q LOSS MUTATED                                         1
  9Q LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q LOSS MUTATED                                                           179
  9Q LOSS WILD-TYPE                                                         194
D58V9, multiclass
                                                             clus
vv                                                            9Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)             179
                                                             clus
vv                                                            9Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               194
D58V10, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED     4 180
  9Q LOSS WILD-TYPE   8 199
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      4  180
  9Q LOSS WILD-TYPE    8  199
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                4                 8
  YES             180               199
D58V11, continuous
D58V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q LOSS MUTATED   145   3   2   7
  9Q LOSS WILD-TYPE 172   4   2  11
D58V13, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  R0             145               172
  R1               3                 4
  R2               2                 2
  RX               7                11

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    97  52
  10P LOSS WILD-TYPE 138  70
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               149                208 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                52                 70 
$`10P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3411 TCGA-18-3412 TCGA-18-3421 TCGA-18-4083 TCGA-18-5592 
       12.16        46.52        11.34        43.76         6.15         3.02 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 
       27.16        46.88        99.16        70.13        60.89        31.69 
TCGA-21-1080 TCGA-21-1082 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 
      122.43       119.80        21.73        32.19        19.99        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
       64.21         1.74        27.02        20.45        35.08        24.13 
TCGA-22-4599 TCGA-22-4609 TCGA-22-4613 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       38.17         9.53        11.77        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5483 TCGA-22-5491 TCGA-33-4533 TCGA-33-4538 TCGA-33-4582 
       54.28        18.84        56.32       114.05        97.94       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-34-2596 TCGA-34-2605 TCGA-34-5236 TCGA-34-5927 
      141.34        14.07         2.63        28.96         9.04        22.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4135 TCGA-37-5819 TCGA-39-5019 TCGA-39-5021 
        0.43         0.39         6.81         3.39        44.71        68.58 
TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-39-5039 
       60.76        24.33         1.94        27.35        35.64        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-6143 TCGA-43-6770 TCGA-43-8118 
       24.59        22.49        11.74        12.36        10.19         2.93 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 
        0.39        29.95        17.79         5.42        30.31        28.93 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 
        0.99         1.32         0.85         0.20         1.35         1.78 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZK 
        0.56         0.53         1.12         0.99         0.99         0.13 
TCGA-58-8386 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 
        0.03        44.09        16.47         0.66        34.36        21.07 
TCGA-60-2703 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2715 TCGA-60-2719 
       96.82        80.42        49.48        66.51        35.34        42.61 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       26.79        16.96         2.01         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 TCGA-66-2777 TCGA-66-2786 
        0.99        20.98        25.02        23.01         2.01        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2800 
       40.01        22.98         4.04         5.03        10.06        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6845 
        2.73         6.64         8.02         3.12        29.56        23.28 
TCGA-77-7138 TCGA-77-7139 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
       11.18        89.95        53.95        82.92       104.09        27.39 
TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 
       55.33         0.33        30.81         1.12         0.59         0.03 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 
        1.25         1.97         0.53         1.41         0.46         0.36 
TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-90-A4EE 
        1.81         1.78         2.01         0.72         0.89        10.88 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 
        5.26         2.86         0.16         6.90         2.73        13.58 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30        14.76         1.18         3.02 

$`10P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 
        4.47        81.07        79.46         4.80        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 
       28.34        24.92         1.61         2.79        90.51       119.54 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1081 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       34.78        15.55         9.30         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1002 TCGA-22-1012 TCGA-22-1017 
       29.85        10.82         7.33         4.31        14.10        48.82 
TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 
       48.33         0.56        34.75        13.12        32.02        19.30 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       31.73        64.90        63.52        71.34        79.20        11.74 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 
       30.08        62.86        16.60         7.63        43.10       173.79 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 
       54.44        10.98        19.76        26.99        61.61        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 
       32.84        31.23        50.24        51.78        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 
        7.73        14.07         5.52         4.96         1.08         3.95 
TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 
        6.54         8.09         7.46         7.82         0.39        47.80 
TCGA-39-5016 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5034 TCGA-39-5035 
       74.07        55.17        70.03         1.71        36.39        15.58 
TCGA-39-5037 TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 
       35.70        17.06        13.12        27.02        11.47        18.05 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 
       12.46         5.42         3.78         6.97         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
        6.64         6.35         9.96        10.65        13.87         0.39 
TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 
        8.75        27.45         0.10         2.04         1.02         0.99 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 
        0.43         1.45         0.03         5.82         1.18         2.07 
TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.51         1.02         0.26        13.25        12.43         8.94 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 
       36.59        17.72         3.58        12.23        10.22        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       92.71        21.70        41.39         9.01        56.91        50.33 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       48.49         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 
       11.77        43.10        21.07         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 
        2.01         1.02         2.01         2.01         7.07        19.00 
TCGA-66-2773 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 
        3.02        19.00        12.03         3.98        12.00        24.95 
TCGA-66-2785 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-68-7757 
        1.94        22.98        30.02        54.08         4.01         6.94 
TCGA-77-6843 TCGA-77-6844 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       73.08        75.09        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
      106.95         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8148 TCGA-77-8154 TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 
        9.63        35.90        23.44         0.36         0.79         0.33 
TCGA-85-7698 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8072 TCGA-85-8276 
        1.61         1.15         0.85         1.97         1.18         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8355 TCGA-85-8481 
        1.45         1.78         1.97         2.20         0.66         0.66 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
        0.13         0.10         0.46         0.46         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         1.55         2.93         0.59 
TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
        3.29         8.02         2.70         3.48         4.01         2.27 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-98-7454 TCGA-98-8022 
        4.70        39.88        44.15         6.18         8.42         7.33 
TCGA-L3-A4E7 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        56.61        50.86        37.32 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.03               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            141.34             173.79 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
             13.58              10.82 
[1] "0.0 - 141.3 (13.6)" "0.0 - 173.8 (10.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
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        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10P LOSS MUTATED         1       27       63        0        14        22
  10P LOSS WILD-TYPE       0       40       68        1        31        43
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10P LOSS MUTATED           24          9        1
  10P LOSS WILD-TYPE         29         11        4
D59V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P LOSS MUTATED    38  97  19   7
  10P LOSS WILD-TYPE  54 142  23  11
D59V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1               38                 54
  T2               97                142
  T3               19                 23
  T4                7                 11
                    vv
clus                  N0  N1  N2  N3
  10P LOSS MUTATED   109  33  15   2
  10P LOSS WILD-TYPE 136  70  18   3
D59V5, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0              109                136
  N1               33                 70
  N2               15                 18
  N3                2                  3
                    vv
clus                  M0  M1  MX
  10P LOSS MUTATED   141   1  16
  10P LOSS WILD-TYPE 192   4  31
D59V6, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  M0              141                192
  M1                1                  4
  MX               16                 31
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    35 126
  10P LOSS WILD-TYPE  63 167
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     35  126
  10P LOSS WILD-TYPE   63  167
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               35                 63
  MALE                126                167
D59V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                       5
  10P LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10P LOSS MUTATED                                        2
  10P LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10P LOSS MUTATED                                         0
  10P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P LOSS MUTATED                                                           154
  10P LOSS WILD-TYPE                                                         219
D59V9, multiclass
                                                             clus
vv                                                            10P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              154
                                                             clus
vv                                                            10P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                219
D59V10, binary
                    cls
clus                   0   1
  10P LOSS MUTATED     4 157
  10P LOSS WILD-TYPE   8 222
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      4  157
  10P LOSS WILD-TYPE    8  222
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 4                  8
  YES              157                222
D59V11, continuous
D59V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P LOSS MUTATED   135   3   0   8
  10P LOSS WILD-TYPE 182   4   4  10
D59V13, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  R0              135                182
  R1                3                  4
  R2                0                  4
  RX                8                 10

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED   100  51
  10Q LOSS WILD-TYPE 135  71
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               151                206 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                51                 71 
$`10Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3411 TCGA-18-3412 TCGA-18-4083 TCGA-18-4721 
       12.16         4.47        46.52        11.34         6.15        90.51 
TCGA-18-5592 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1082 
        3.02        46.88        99.16        70.13        60.89       119.80 
TCGA-21-5783 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 
       88.08        32.19        19.99         7.33        14.93        64.21 
TCGA-22-1011 TCGA-22-4593 TCGA-22-4595 TCGA-22-4599 TCGA-22-4609 TCGA-22-5474 
        1.74        35.08        24.13        38.17         9.53        14.60 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5483 TCGA-22-5491 TCGA-33-4533 
       44.22         0.79        54.28        18.84        56.32       114.05 
TCGA-33-4538 TCGA-33-4583 TCGA-33-4586 TCGA-33-6738 TCGA-34-2596 TCGA-34-2605 
       97.94       141.34        14.07        26.99         2.63        28.96 
TCGA-34-5236 TCGA-34-5927 TCGA-34-5929 TCGA-37-3792 TCGA-37-4135 TCGA-37-5819 
        9.04        22.95         4.96         0.39         6.81         3.39 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5027 TCGA-39-5029 TCGA-39-5030 
       74.07        44.71        68.58        60.76        24.33         1.94 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       27.35        35.64        17.88        24.59        22.49        27.02 
TCGA-43-3920 TCGA-43-6770 TCGA-43-7658 TCGA-46-6025 TCGA-51-4079 TCGA-51-4080 
       11.74        10.19        66.51        10.65         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-7221 
       29.95        17.79         5.42        30.31        28.93         0.99 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 
        0.99         1.32         0.85         0.20         1.35         1.78 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK TCGA-58-8386 
        0.53         1.12         1.51         0.99         0.13         0.03 
TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-60-2695 
       12.43        44.09        16.47         0.66        34.36        21.07 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 
       80.42        49.48        66.51         9.01        35.34        42.61 
TCGA-60-2725 TCGA-66-2727 TCGA-66-2737 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 
       26.79        16.96         2.01         1.02         2.01         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2770 TCGA-66-2773 TCGA-66-2782 TCGA-66-2785 
       20.98        25.02        23.01         3.02        12.00         1.94 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 
       40.01        22.98         4.04         5.03        30.02        10.06 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 
       49.05         2.73         6.64         6.94         3.12        29.56 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7463 TCGA-77-8009 TCGA-77-8139 TCGA-77-8144 
       11.18        89.95        46.78        53.95       104.09        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6560 TCGA-85-6798 
        9.63        55.33         0.33        30.81         0.36         1.12 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 
        1.61         0.03         1.25         1.97         0.53         1.41 
TCGA-85-8277 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 
        0.36         1.81         1.78         2.01         0.72         0.89 
TCGA-92-8064 TCGA-94-7033 TCGA-94-7557 TCGA-96-7545 TCGA-96-8170 TCGA-98-8021 
        5.26         2.86         0.16        44.15         6.90        13.58 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30         1.15        14.76         1.18         3.02 
TCGA-NC-A5HI 
       37.32 

$`10Q LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       81.07        79.46         4.80        13.02        59.51        28.34 
TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 TCGA-18-5595 TCGA-21-1070 
       24.92         1.61        43.76         2.79        27.16       119.54 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1083 
       34.78        15.55        31.69       122.43         9.30         8.78 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1012 
       31.63        29.85        21.73        10.82         4.31        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4594 TCGA-22-4596 TCGA-22-4601 
       27.02        48.82        20.45        48.33         0.56        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       13.12        32.02        19.30        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 
       63.52        71.34        79.20        11.74        30.08        62.86 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4587 
       16.60         7.63        43.10       173.79       103.53        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       10.98        19.76        61.61        31.50        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       50.24        51.78        32.68        10.82         7.73        14.07 
TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 TCGA-37-4130 
        5.52         1.08         3.95         0.43         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-39-5011 TCGA-39-5022 TCGA-39-5024 
        7.46         7.82         0.39        47.80        55.17        70.03 
TCGA-39-5028 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5040 TCGA-43-2581 
        1.71        36.39        15.58        35.70        17.06        13.12 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 
       11.47        18.05        12.36        12.46         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        6.97         1.58         6.64         6.35         2.93         9.96 
TCGA-46-6026 TCGA-52-7811 TCGA-52-7812 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
       13.87         8.75        27.45         0.10         2.04         1.02 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7822 TCGA-56-8504 TCGA-56-8624 TCGA-56-8625 
        0.43         1.45         0.03         5.82         1.18         2.07 
TCGA-56-8626 TCGA-56-A49D TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8390 
        0.56         0.99         1.02         0.26        13.25         8.94 
TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       36.59        17.72         3.58        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 
       37.94        92.71        21.70        41.39        56.91        50.33 
TCGA-60-2716 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       48.49         3.16        32.28        29.85        35.90        23.57 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 
       11.77        43.10        21.07         0.99         0.92         0.99 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 
       19.00         2.01        19.00        12.03         3.98        24.95 
TCGA-66-2786 TCGA-66-2790 TCGA-66-2794 TCGA-66-2795 TCGA-68-8250 TCGA-77-6843 
       25.97        22.98        54.08         4.01         8.02        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       75.09        23.28        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8130 
      106.95         0.16        15.75         6.51        86.76        82.92 
TCGA-77-8154 TCGA-77-A5GH TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 
       35.90        23.44         0.79         0.59         0.33         1.15 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 
        0.85         1.97         0.46         1.18         0.43         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8355 TCGA-85-8481 TCGA-85-8582 
        1.78         1.97         2.20         0.66         0.66         0.13 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 
        0.10         0.46         0.46         0.82         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.89         1.55         2.93         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8065 
        8.02        10.88         2.70         3.48         4.01         2.27 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-98-7454 TCGA-98-8020 TCGA-98-8022 
        4.70        39.88         6.18         8.42         2.73         7.33 
TCGA-NC-A5HE TCGA-NC-A5HG 
       56.61        50.86 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.03               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            141.34             173.79 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            12.000             11.605 
[1] "0.0 - 141.3 (12.0)" "0.0 - 173.8 (11.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
[1] "hr=" "1.1"
D60V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  10Q LOSS MUTATED         1       26       66        0        15        22
  10Q LOSS WILD-TYPE       0       41       65        1        30        43
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  10Q LOSS MUTATED           24          8        1
  10Q LOSS WILD-TYPE         29         12        4
D60V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS MUTATED    38 102  18   6
  10Q LOSS WILD-TYPE  54 137  24  12
D60V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1               38                 54
  T2              102                137
  T3               18                 24
  T4                6                 12
                    vv
clus                  N0  N1  N2  N3
  10Q LOSS MUTATED   111  35  14   2
  10Q LOSS WILD-TYPE 134  68  19   3
D60V5, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0              111                134
  N1               35                 68
  N2               14                 19
  N3                2                  3
                    vv
clus                  M0  M1  MX
  10Q LOSS MUTATED   143   1  16
  10Q LOSS WILD-TYPE 190   4  31
D60V6, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  M0              143                190
  M1                1                  4
  MX               16                 31
D60V7, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    37 127
  10Q LOSS WILD-TYPE  61 166
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     37  127
  10Q LOSS WILD-TYPE   61  166
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               37                 61
  MALE                127                166
D60V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                       6
  10Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  10Q LOSS MUTATED                                        2
  10Q LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  10Q LOSS MUTATED                                         0
  10Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q LOSS MUTATED                                                           156
  10Q LOSS WILD-TYPE                                                         217
D60V9, multiclass
                                                             clus
vv                                                            10Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              156
                                                             clus
vv                                                            10Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                217
D60V10, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED     4 160
  10Q LOSS WILD-TYPE   8 219
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      4  160
  10Q LOSS WILD-TYPE    8  219
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 4                  8
  YES              160                219
D60V11, continuous
D60V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q LOSS MUTATED   137   2   0   7
  10Q LOSS WILD-TYPE 180   5   4  11
D60V13, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  R0              137                180
  R1                2                  5
  R2                0                  4
  RX                7                 11

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    81  42
  11P LOSS WILD-TYPE 154  80
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               123                234 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                42                 80 
$`11P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 
       12.16        79.46        11.34        13.02        28.34        24.92 
TCGA-18-3421 TCGA-21-1071 TCGA-21-1076 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 
       43.76        46.88        60.89       122.43       119.80         8.78 
TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 
       31.63        21.73        10.82         4.31        14.10        27.02 
TCGA-22-1017 TCGA-22-4593 TCGA-22-4596 TCGA-22-4601 TCGA-22-5471 TCGA-22-5473 
       48.82        35.08         0.56        34.75        31.73        63.52 
TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5483 TCGA-33-4533 
       44.22         0.79        54.28        79.20        18.84       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
       97.94        43.10        54.44        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 TCGA-34-5236 TCGA-34-5928 
       61.61        28.96        50.24        51.78         9.04         5.52 
TCGA-34-5929 TCGA-37-3789 TCGA-37-4130 TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 
        4.96         0.43         8.09         7.46         6.81         0.39 
TCGA-39-5011 TCGA-39-5021 TCGA-39-5022 TCGA-39-5031 TCGA-39-5035 TCGA-39-5037 
       47.80        68.58        55.17        27.35        15.58        35.70 
TCGA-43-2581 TCGA-43-3920 TCGA-43-6143 TCGA-43-7657 TCGA-43-7658 TCGA-46-3768 
       13.12        11.74        12.36         1.58        66.51         9.96 
TCGA-46-6025 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 
       10.65         0.99         0.43         1.45         1.32         0.03 
TCGA-56-8503 TCGA-56-8504 TCGA-56-8624 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4ZJ 
        1.35         5.82         1.18         0.53         1.12         1.02 
TCGA-56-A4ZK TCGA-58-8387 TCGA-58-8390 TCGA-60-2695 TCGA-60-2698 TCGA-60-2708 
        0.13        13.25         8.94        21.07        10.22        80.42 
TCGA-60-2712 TCGA-60-2714 TCGA-60-2720 TCGA-60-2721 TCGA-60-2724 TCGA-60-2726 
        9.01        50.33         3.16        32.28        23.57        11.77 
TCGA-66-2742 TCGA-66-2758 TCGA-66-2759 TCGA-66-2768 TCGA-66-2771 TCGA-66-2773 
       21.07        20.98        25.02         2.01        19.00         3.02 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2793 TCGA-68-7757 TCGA-68-8250 
       12.03         3.98        12.00        10.06         6.94         8.02 
TCGA-68-8251 TCGA-77-6844 TCGA-77-7139 TCGA-77-7141 TCGA-77-7338 TCGA-77-8008 
        3.12        75.09        89.95         0.49         0.16        86.76 
TCGA-77-8009 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-85-7699 TCGA-85-7843 
       53.95        27.39         9.63        55.33         0.03         1.15 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8277 TCGA-85-8288 TCGA-85-8352 TCGA-85-8353 
        1.97         0.85         0.36         1.78         2.20         1.78 
TCGA-85-8479 TCGA-85-A4QR TCGA-90-7964 TCGA-96-7545 TCGA-98-8020 TCGA-98-8023 
        0.72         0.82         3.29        44.15         2.73        10.13 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        3.02        56.61        50.86 

$`11P LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3415 TCGA-18-3419 
        4.47        81.07         4.80        46.52        59.51         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 
       99.16        70.13        34.78        15.55        31.69         9.30 
TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 
       88.08        29.85        32.19        19.99         7.33        14.93 
TCGA-22-1005 TCGA-22-1011 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 
       64.21         1.74        20.45        48.33        24.13        38.17 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 
       13.12        32.02        19.30         9.53        11.77        64.90 
TCGA-22-5474 TCGA-22-5480 TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       14.60        71.34        11.74        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       16.60         7.63       173.79       103.53       141.34        14.07 
TCGA-33-4589 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 TCGA-34-5234 TCGA-34-5239 
       10.98        31.50        32.84        31.23        32.68        10.82 
TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
        7.73        14.07        22.95         1.08         3.95         0.39 
TCGA-37-4129 TCGA-37-4133 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 TCGA-39-5024 
        6.54         7.82         3.39        74.07        44.71        70.03 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5034 TCGA-39-5036 
       60.76         1.71        24.33         1.94        36.39        35.64 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 
       17.88        17.06        24.59        22.49        27.02        11.47 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.46        10.19         5.42         3.78         6.97 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        6.64         6.35         2.93        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
       29.95        17.79         5.42        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 TCGA-56-7582 
       28.93         0.10         2.04         1.02         0.99         0.85 
TCGA-56-7730 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4BX 
        0.20         1.78         2.07         0.56         0.99         1.51 
TCGA-56-A4BY TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 TCGA-58-8391 TCGA-58-8392 
        0.99         0.26         0.03        12.43        44.09        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
        0.66        34.36        36.59        17.72         3.58        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 
       96.82        37.94        92.71        21.70        49.48        66.51 
TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2722 
       41.39        56.91        35.34        48.49        42.61        29.85 
TCGA-60-2723 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2744 
       35.90        26.79        16.96        43.10         2.01         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2763 
        1.02         2.01         0.92         0.99         0.99         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2777 
        2.01         1.02         2.01         7.07        23.01         2.01 
TCGA-66-2778 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       19.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 
        4.04        22.98         5.03        30.02        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-77-6842 TCGA-77-6843 TCGA-77-6845 
       49.05         2.73         6.64        29.56        73.08        23.28 
TCGA-77-7138 TCGA-77-7140 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 
       11.18        20.78        42.25        70.09       106.95        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8130 TCGA-77-8139 TCGA-77-8154 TCGA-77-8156 
       15.75         6.51        82.92       104.09        35.90         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 
        0.33         1.61         1.25         1.97         0.53         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 
        0.46         1.18         0.43         1.45         1.97         1.81 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        2.01         0.66         0.66         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 
        0.46         0.46         0.62         0.79         0.43        24.89 
TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 
        1.55         2.93         0.59         8.02        10.88         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 
        3.48         4.01         5.26         2.27         2.86         0.16 
TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8021 
        4.70        39.88         6.18         6.90         8.42        13.58 
TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HI 
        7.33         7.30         1.15        14.76         1.18        37.32 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.03               0.03 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            122.43             173.79 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             12.03              11.08 
[1] "0.0 - 122.4 (12.0)" "0.0 - 173.8 (11.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D61V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11P LOSS MUTATED         0       22       46        0        13        21
  11P LOSS WILD-TYPE       1       45       85        1        32        44
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11P LOSS MUTATED           21          3        4
  11P LOSS WILD-TYPE         32         17        1
D61V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P LOSS MUTATED    31  81  16   5
  11P LOSS WILD-TYPE  61 158  26  13
D61V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1               31                 61
  T2               81                158
  T3               16                 26
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  11P LOSS MUTATED    84  41   8   0
  11P LOSS WILD-TYPE 161  62  25   5
D61V5, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0               84                161
  N1               41                 62
  N2                8                 25
  N3                0                  5
                    vv
clus                  M0  M1  MX
  11P LOSS MUTATED   113   4  13
  11P LOSS WILD-TYPE 220   1  34
D61V6, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  M0              113                220
  M1                4                  1
  MX               13                 34
D61V7, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    32 101
  11P LOSS WILD-TYPE  66 192
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     32  101
  11P LOSS WILD-TYPE   66  192
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               32                 66
  MALE                101                192
D61V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                       4
  11P LOSS WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11P LOSS MUTATED                                        1
  11P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11P LOSS MUTATED                                         1
  11P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P LOSS MUTATED                                                           127
  11P LOSS WILD-TYPE                                                         246
D61V9, multiclass
                                                             clus
vv                                                            11P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              127
                                                             clus
vv                                                            11P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                246
D61V10, binary
                    cls
clus                   0   1
  11P LOSS MUTATED     4 129
  11P LOSS WILD-TYPE   8 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      4  129
  11P LOSS WILD-TYPE    8  250
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 4                  8
  YES              129                250
D61V11, continuous
D61V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P LOSS MUTATED   110   2   1   4
  11P LOSS WILD-TYPE 207   5   3  14
D61V13, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  R0              110                207
  R1                2                  5
  R2                1                  3
  RX                4                 14

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    69  34
  11Q LOSS WILD-TYPE 166  88
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
               103                254 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                34                 88 
$`11Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3409 TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 
       12.16        79.46        11.34        13.02        28.34        24.92 
TCGA-18-3421 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-21-5783 TCGA-21-5787 
       43.76        60.89       122.43         8.78        88.08        10.82 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4593 TCGA-22-4601 
        4.31         1.74        14.10        27.02        35.08        34.75 
TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-33-4533 TCGA-33-4589 TCGA-33-6737 
       63.52        44.22         0.79       114.05        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-5232 TCGA-34-5236 
       26.99         2.63        61.61        28.96        51.78         9.04 
TCGA-34-5928 TCGA-37-3789 TCGA-37-4130 TCGA-39-5016 TCGA-39-5021 TCGA-39-5022 
        5.52         0.43         8.09        74.07        68.58        55.17 
TCGA-39-5027 TCGA-39-5031 TCGA-39-5037 TCGA-43-2581 TCGA-43-3920 TCGA-43-7657 
       60.76        27.35        35.70        13.12        11.74         1.58 
TCGA-43-7658 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 
       66.51         6.35         9.96        10.65        13.87         0.39 
TCGA-52-7809 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7822 
        5.42         0.99         0.43         0.99         1.32         0.03 
TCGA-56-8504 TCGA-56-8624 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4ZK TCGA-58-8387 
        5.82         1.18         1.12         1.51         0.13        13.25 
TCGA-58-8390 TCGA-60-2695 TCGA-60-2698 TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 
        8.94        21.07        10.22        80.42         9.01        50.33 
TCGA-60-2722 TCGA-60-2725 TCGA-60-2726 TCGA-66-2758 TCGA-66-2767 TCGA-66-2768 
       29.85        26.79        11.77        20.98         2.01         2.01 
TCGA-66-2790 TCGA-66-2793 TCGA-68-8250 TCGA-68-8251 TCGA-77-7139 TCGA-77-7338 
       22.98        10.06         8.02         3.12        89.95         0.16 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 
       86.76        53.95        82.92        27.39         9.63        55.33 
TCGA-85-6798 TCGA-85-7699 TCGA-85-8048 TCGA-85-8072 TCGA-85-8277 TCGA-85-8352 
        1.12         0.03         0.85         1.18         0.36         2.20 
TCGA-85-8479 TCGA-85-8664 TCGA-85-A4QR TCGA-90-7766 TCGA-90-7964 TCGA-90-A4EE 
        0.72         0.10         0.82         1.55         3.29        10.88 
TCGA-92-7341 TCGA-96-7545 TCGA-98-8020 TCGA-98-8023 TCGA-MF-A522 TCGA-NC-A5HE 
        3.48        44.15         2.73        10.13         3.02        56.61 
TCGA-NC-A5HG 
       50.86 

$`11Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3415 TCGA-18-3419 
        4.47        81.07         4.80        46.52        59.51         1.61 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       46.88        99.16        70.13        34.78        15.55        31.69 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI 
        9.30       119.80        31.63        29.85        21.73        32.19 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1017 TCGA-22-4591 
       19.99         7.33        14.93        64.21        48.82        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 
       48.33        24.13         0.56        38.17        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 
       19.30         9.53        11.77        31.73        64.90        14.60 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       62.86        56.32        16.60         7.63        97.94        43.10 
TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2604 
      173.79       103.53       141.34        14.07        54.44        31.50 
TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 
       32.84        31.23        50.24        32.68        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3792 
       14.07        22.95         4.96         1.08         3.95         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        6.54         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5024 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       47.80        44.71        70.03         1.71        24.33         1.94 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.64        17.88        17.06        24.59 
TCGA-43-2578 TCGA-43-3394 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       22.49        27.02        11.47        18.05        12.36        12.46 
TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 TCGA-43-8118 
       10.19         5.42         3.78         6.97         6.64         2.93 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95        17.79        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7579 TCGA-56-7582 
       28.93         0.10         2.04         1.02         1.45         0.85 
TCGA-56-7730 TCGA-56-8503 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        0.20         1.35         1.78         2.07         0.56         0.53 
TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8388 
        0.99         0.99         1.02         0.26         0.03        12.43 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N 
       44.09        16.47         0.66        34.36        36.59        17.72 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 
        3.58        12.23        96.82        37.94        92.71        21.70 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        66.51        41.39        56.91        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-66-2727 
       42.61         3.16        32.28        35.90        23.57        16.96 
TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 
       43.10         2.01        21.07         0.99         1.02         2.01 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 
        0.92         0.99         0.99        25.02         0.99         2.01 
TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        1.02         7.07        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
       19.00        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2792 
       25.97        40.01        22.98         4.04         5.03        30.02 
TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 
       54.08         4.01        49.05         2.73         6.64         6.94 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
       29.56        73.08        75.09        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 
        0.49        42.25        70.09       106.95        46.78        15.75 
TCGA-77-8007 TCGA-77-8139 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH 
        6.51       104.09        35.90         0.33        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 
        0.36         0.79         0.59         0.33         1.61         1.15 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 
        1.25         1.97         1.97         0.53         1.41         0.46 
TCGA-85-8276 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 
        0.43         1.45         1.78         1.97         1.81         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8666 
        2.01         0.66         0.66         0.89         0.13         0.46 
TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7767 
        0.46         0.62         0.79         0.43        24.89         2.93 
TCGA-90-7769 TCGA-90-A4ED TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        0.59         8.02         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 
        2.86         0.16         4.70        39.88         6.18         6.90 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        8.42        13.58         7.33         7.30         1.15        14.76 
TCGA-LA-A446 TCGA-NC-A5HI 
        1.18        37.32 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.03               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            122.43             173.79 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             10.88              12.13 
[1] "0.0 - 122.4 (10.9)" "0.0 - 173.8 (12.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
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        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D62V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  11Q LOSS MUTATED         0       16       35        0        12        22
  11Q LOSS WILD-TYPE       1       51       96        1        33        43
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  11Q LOSS MUTATED           16          4        2
  11Q LOSS WILD-TYPE         37         16        3
D62V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q LOSS MUTATED    22  71  12   5
  11Q LOSS WILD-TYPE  70 168  30  13
D62V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1               22                 70
  T2               71                168
  T3               12                 30
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  11Q LOSS MUTATED    63  40   6   1
  11Q LOSS WILD-TYPE 182  63  27   4
D62V5, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0               63                182
  N1               40                 63
  N2                6                 27
  N3                1                  4
                    vv
clus                  M0  M1  MX
  11Q LOSS MUTATED    90   2  14
  11Q LOSS WILD-TYPE 243   3  33
D62V6, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  M0               90                243
  M1                2                  3
  MX               14                 33
D62V7, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    22  88
  11Q LOSS WILD-TYPE  76 205
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     22   88
  11Q LOSS WILD-TYPE   76  205
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               22                 76
  MALE                 88                205
D62V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                       5
  11Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  11Q LOSS MUTATED                                        1
  11Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  11Q LOSS MUTATED                                         0
  11Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q LOSS MUTATED                                                           104
  11Q LOSS WILD-TYPE                                                         269
D62V9, multiclass
                                                             clus
vv                                                            11Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              104
                                                             clus
vv                                                            11Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                269
D62V10, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED     3 107
  11Q LOSS WILD-TYPE   9 272
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      3  107
  11Q LOSS WILD-TYPE    9  272
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 3                  9
  YES              107                272
D62V11, continuous
D62V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q LOSS MUTATED    90   2   1   1
  11Q LOSS WILD-TYPE 227   5   3  17
D62V13, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  R0               90                227
  R1                2                  5
  R2                1                  3
  RX                1                 17

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    17  12
  12P LOSS WILD-TYPE 218 110
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                29                328 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                12                110 
$`12P LOSS MUTATED`
TCGA-18-3407 TCGA-22-0944 TCGA-22-1016 TCGA-22-5478 TCGA-33-4533 TCGA-33-4587 
        4.47         7.33        27.02         0.79       114.05        54.44 
TCGA-34-2604 TCGA-37-4129 TCGA-37-4130 TCGA-37-4141 TCGA-39-5011 TCGA-39-5029 
       31.50         6.54         8.09         0.39        47.80        24.33 
TCGA-43-2581 TCGA-43-5668 TCGA-43-6143 TCGA-43-8118 TCGA-56-7579 TCGA-56-8624 
       13.12        11.47        12.36         2.93         1.45         1.18 
TCGA-56-A49D TCGA-56-A4ZK TCGA-66-2773 TCGA-77-7138 TCGA-77-8008 TCGA-77-8153 
        0.99         0.13         3.02        11.18        86.76        55.33 
TCGA-85-6798 TCGA-85-8353 TCGA-85-8479 TCGA-85-A50M TCGA-90-A4ED 
        1.12         1.78         0.72         0.62         8.02 

$`12P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 
        6.15         2.79        90.51         3.02        27.16       119.54 
TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       46.88        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       31.69       122.43         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       88.08        29.85        21.73        10.82        32.19        19.99 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 
       14.93         4.31        64.21         1.74        14.10        48.82 
TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       20.45        35.08        48.33        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       34.75        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
       31.73        64.90        63.52        14.60        44.22        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60         7.63        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        14.07        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 
        2.63        61.61        28.96        32.84        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       22.95         5.52         4.96         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 
        0.39         7.46         7.82         6.81         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
        1.94        27.35        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 
       17.88        17.06        24.59        22.49        27.02        11.74 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 
       18.05        12.46        10.19         5.42         3.78         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        1.58        66.51         6.64         6.35         9.96        10.65 
TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 
       13.87         0.39         0.39        29.95        17.79         5.42 
TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       30.31         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 
        1.02         0.99         0.43         0.99         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 
        0.20         0.03         1.35         5.82         1.78         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         1.51         0.99         1.02 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       16.47         0.66        34.36        36.59        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 
        3.58        12.23        10.22        96.82        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 
        4.01        49.05         2.73         6.64         6.94         8.02 
TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 
        3.12        29.56        73.08        75.09        23.28        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       20.78         0.49        42.25        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 
       46.78        15.75         6.51        53.95        82.92       104.09 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH 
       27.39         9.63        35.90         0.33        30.81        23.44 
TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
        0.36         0.79         0.59         0.33         1.61         0.03 
TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 
        1.15         1.25         1.97         0.85         1.97         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        1.41         0.46         1.18         0.43         0.36         1.45 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         1.81         2.20         2.01         0.66 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        0.66         0.89         0.13         0.10         0.46         0.46 
TCGA-85-A4QR TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.82         0.79         0.43        24.89         1.55         2.93 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        0.59         3.29        10.88         2.70         3.48         4.01 
TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 
        5.26         2.27         2.86         0.16         4.70        39.88 
TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       44.15         6.18         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 
        7.33        10.13         7.30         1.15        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.13               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
            114.05             173.79 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             7.330             12.095 
[1] "0.1 - 114.0 (7.3)"  "0.0 - 173.8 (12.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D63V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12P LOSS MUTATED         0        5       16        0         2         1
  12P LOSS WILD-TYPE       1       62      115        1        43        64
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12P LOSS MUTATED            6          1        0
  12P LOSS WILD-TYPE         47         19        5
D63V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED     9  16   6   0
  12P LOSS WILD-TYPE  83 223  36  18
D63V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1                9                 83
  T2               16                223
  T3                6                 36
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  12P LOSS MUTATED    23   6   2   0
  12P LOSS WILD-TYPE 222  97  31   5
D63V5, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0               23                222
  N1                6                 97
  N2                2                 31
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12P LOSS MUTATED    27   0   4
  12P LOSS WILD-TYPE 306   5  43
D63V6, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  M0               27                306
  M1                0                  5
  MX                4                 43
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    10  21
  12P LOSS WILD-TYPE  88 272
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     10   21
  12P LOSS WILD-TYPE   88  272
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               10                 88
  MALE                 21                272
D63V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                       1
  12P LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12P LOSS MUTATED                                        1
  12P LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12P LOSS MUTATED                                         1
  12P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P LOSS MUTATED                                                            28
  12P LOSS WILD-TYPE                                                         345
D63V9, multiclass
                                                             clus
vv                                                            12P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               28
                                                             clus
vv                                                            12P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                345
D63V10, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     0  31
  12P LOSS WILD-TYPE  12 348
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      0   31
  12P LOSS WILD-TYPE   12  348
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 0                 12
  YES               31                348
D63V11, continuous
D63V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P LOSS MUTATED    26   1   0   1
  12P LOSS WILD-TYPE 291   6   4  17
D63V13, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  R0               26                291
  R1                1                  6
  R2                0                  4
  RX                1                 17

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    20  12
  12Q LOSS WILD-TYPE 215 110
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                32                325 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                12                110 
$`12Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-22-0944 TCGA-22-5478 TCGA-33-4533 
        4.47        81.07        79.46         7.33         0.79       114.05 
TCGA-33-4587 TCGA-34-2604 TCGA-37-4129 TCGA-37-4141 TCGA-39-5029 TCGA-43-2581 
       54.44        31.50         6.54         0.39        24.33        13.12 
TCGA-43-5668 TCGA-43-6143 TCGA-43-8118 TCGA-51-4081 TCGA-52-7810 TCGA-56-8624 
       11.47        12.36         2.93        29.95        30.31         1.18 
TCGA-56-A49D TCGA-60-2703 TCGA-66-2773 TCGA-68-8250 TCGA-77-7138 TCGA-77-8008 
        0.99        96.82         3.02         8.02        11.18        86.76 
TCGA-77-8153 TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 TCGA-85-8479 TCGA-85-A50M 
       55.33         0.36         1.12         0.59         0.72         0.62 
TCGA-90-A4ED TCGA-MF-A522 
        8.02         3.02 

$`12Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 
       12.16         4.80        46.52        11.34        13.02        59.51 
TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       28.34        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 
       90.51         3.02        27.16       119.54        46.88        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 
       70.13        60.89        34.78        15.55        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1000 TCGA-22-1002 
       21.73        10.82        32.19        19.99        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 
       35.08        48.33        24.13         0.56        38.17        34.75 
TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       13.12        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       64.90        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
       16.60         7.63        97.94        43.10       173.79       103.53 
TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 
      141.34        14.07        10.98        19.76        26.99         2.63 
TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       61.61        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 
        5.52         4.96         1.08         3.95         0.43         0.39 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         7.82         6.81         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
        1.71         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-3394 
       35.70        17.88        17.06        24.59        22.49        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 
       11.74        18.05        12.46        10.19         5.42         3.78 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 
        6.97         1.58        66.51         6.64         6.35         9.96 
TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 
       10.65        13.87         0.39         0.39        17.79         5.42 
TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 
        8.75        27.45        28.93         0.10         2.04         1.02 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 
        0.99         0.43         0.99         1.45         1.32         0.85 
TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 
        0.20         0.03         1.35         5.82         1.78         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ 
        0.56         0.53         1.12         1.51         0.99         1.02 
TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        0.13         0.26         0.03        13.25        12.43         8.94 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N 
       44.09        16.47         0.66        34.36        36.59        17.72 
TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2704 TCGA-60-2706 
       21.07         3.58        12.23        10.22        37.94        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       21.70        80.42        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 
        0.99         2.01         1.02         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 
       23.01        19.00         2.01        19.00        12.03         3.98 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 
       12.00        24.95         1.94        25.97        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 
        4.04        22.98         5.03        30.02        10.06        54.08 
TCGA-66-2795 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 
        4.01        49.05         2.73         6.64         6.94         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 
       29.56        73.08        75.09        23.28        89.95        20.78 
TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 
        0.49        42.25        70.09       106.95         0.16        46.78 
TCGA-77-7465 TCGA-77-8007 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
       15.75         6.51        53.95        82.92       104.09        27.39 
TCGA-77-8148 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
        9.63        35.90         0.33        30.81        23.44         0.79 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.33         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.43         0.36         1.45         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 
        2.20         1.78         2.01         0.66         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A513 
        0.13         0.10         0.46         0.46         0.82         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.89         1.55         2.93         0.59         3.29 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
       10.88         2.70         3.48         4.01         5.26         2.27 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        44.15         6.18 
TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 
        6.90         8.42         2.73        13.58         7.33        10.13 
TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE TCGA-NC-A5HG 
        7.30         1.15        14.76         1.18        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.36               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            114.05             173.79 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              8.02              12.00 
[1] "0.4 - 114.0 (8.0)"  "0.0 - 173.8 (12.0)"
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
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"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D64V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  12Q LOSS MUTATED         0        5       17        0         2         4
  12Q LOSS WILD-TYPE       1       62      114        1        43        61
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  12Q LOSS MUTATED            5          1        0
  12Q LOSS WILD-TYPE         48         19        5
D64V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED    10  20   5   0
  12Q LOSS WILD-TYPE  82 219  37  18
D64V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1               10                 82
  T2               20                219
  T3                5                 37
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  12Q LOSS MUTATED    25   7   2   0
  12Q LOSS WILD-TYPE 220  96  31   5
D64V5, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0               25                220
  N1                7                 96
  N2                2                 31
  N3                0                  5
                    vv
clus                  M0  M1  MX
  12Q LOSS MUTATED    29   0   6
  12Q LOSS WILD-TYPE 304   5  41
D64V6, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  M0               29                304
  M1                0                  5
  MX                6                 41
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    10  25
  12Q LOSS WILD-TYPE  88 268
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     10   25
  12Q LOSS WILD-TYPE   88  268
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE               10                 88
  MALE                 25                268
D64V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                       2
  12Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  12Q LOSS MUTATED                                        1
  12Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  12Q LOSS MUTATED                                         1
  12Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q LOSS MUTATED                                                            31
  12Q LOSS WILD-TYPE                                                         342
D64V9, multiclass
                                                             clus
vv                                                            12Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               31
                                                             clus
vv                                                            12Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                342
D64V10, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     0  35
  12Q LOSS WILD-TYPE  12 344
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      0   35
  12Q LOSS WILD-TYPE   12  344
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 0                 12
  YES               35                344
D64V11, continuous
D64V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q LOSS MUTATED    28   0   0   1
  12Q LOSS WILD-TYPE 289   7   4  17
D64V13, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  R0               28                289
  R1                0                  7
  R2                0                  4
  RX                1                 17

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED   143  74
  13Q LOSS WILD-TYPE  92  48
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               217                140 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                74                 48 
$`13Q LOSS MUTATED`
TCGA-18-3409 TCGA-18-3410 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 
       79.46         4.80        59.51        28.34         1.61        43.76 
TCGA-18-4083 TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        6.15        90.51       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 
       60.89       122.43         8.78        10.82        32.19        19.99 
TCGA-22-1002 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        4.31         1.74        27.02        48.82        20.45        35.08 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4613 
        0.56        34.75        13.12        32.02        19.30        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5481 
       31.73        64.90        63.52        44.22         0.79        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5491 TCGA-22-5492 TCGA-33-4538 
       11.74        18.84        30.08        56.32        16.60        97.94 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 
      103.53       141.34        14.07        54.44        10.98        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       26.99         2.63        61.61        31.50        28.96        32.84 
TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 
       31.23        50.24        51.78         5.52         4.96         1.08 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 
        0.39         6.54         7.46         7.82         6.81         0.39 
TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 TCGA-39-5022 TCGA-39-5028 TCGA-39-5029 
        3.39        47.80        74.07        55.17         1.71        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5036 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
        1.94        27.35        35.64        22.49        13.12        27.02 
TCGA-43-3920 TCGA-43-5668 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-7656 
       11.74        11.47        12.36        12.46        10.19         6.97 
TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 
       66.51         6.64         6.35         9.96        10.65         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-6546 
       17.79         5.42         8.75        27.45        28.93         1.02 
TCGA-56-7222 TCGA-56-7579 TCGA-56-7730 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 
        0.43         1.45         0.20         1.18         2.07         0.56 
TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-58-8386 TCGA-58-8387 
        0.53         1.12         0.99         0.99         0.03        13.25 
TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-60-2696 TCGA-60-2703 
        8.94        44.09         0.66        34.36         3.58        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2710 TCGA-60-2711 
       37.94        92.71        21.70        80.42        66.51        41.39 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
        9.01        56.91        50.33        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       29.85        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2759 
        1.02         2.01         0.92         0.99        20.98        25.02 
TCGA-66-2763 TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        0.99         2.01         2.01        19.00         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2790 TCGA-66-2792 TCGA-66-2800 TCGA-68-7755 
       40.01        22.98        22.98        30.02        49.05         2.73 
TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6844 
        6.64         6.94         8.02         3.12        29.56        75.09 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 
       89.95        20.78         0.49        70.09       106.95         0.16 
TCGA-77-7463 TCGA-77-8007 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 
       46.78         6.51        53.95        82.92       104.09        27.39 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-85-6561 TCGA-85-7697 TCGA-85-7698 
        9.63        55.33        35.90         0.79         0.33         1.61 
TCGA-85-7844 TCGA-85-7950 TCGA-85-8070 TCGA-85-8071 TCGA-85-8277 TCGA-85-8287 
        1.25         1.97         1.41         0.46         0.36         1.45 
TCGA-85-8288 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8580 TCGA-85-8664 
        1.78         1.81         2.20         1.78         0.89         0.10 
TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.82         0.43         1.55         2.93         0.59         3.29 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-94-7557 
       10.88         2.70         3.48         4.01         5.26         0.16 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 
       39.88        44.15         6.18         8.42        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HE TCGA-NC-A5HG 
       10.13         7.30         1.15        14.76        56.61        50.86 
TCGA-NC-A5HI 
       37.32 

$`13Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 
       12.16         4.47        81.07        46.52        11.34        13.02 
TCGA-18-3417 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1077 TCGA-21-1078 
       24.92         2.79         3.02        27.16        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       31.69         9.30       119.80        31.63        88.08        29.85 
TCGA-21-5786 TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1012 TCGA-22-4594 
       21.73         7.33        14.93        64.21        14.10        48.33 
TCGA-22-4595 TCGA-22-4599 TCGA-22-4609 TCGA-22-5474 TCGA-22-5479 TCGA-22-5480 
       24.13        38.17         9.53        14.60        54.28        71.34 
TCGA-22-5489 TCGA-33-4532 TCGA-33-4533 TCGA-33-4547 TCGA-33-4566 TCGA-34-5234 
       62.86         7.63       114.05        43.10       173.79        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-37-3783 
        9.04        10.82         7.73        14.07        22.95         3.95 
TCGA-37-3789 TCGA-37-4130 TCGA-39-5019 TCGA-39-5021 TCGA-39-5024 TCGA-39-5027 
        0.43         8.09        44.71        68.58        70.03        60.76 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 
       36.39        15.58        35.70        17.88        17.06        24.59 
TCGA-43-5670 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-8118 TCGA-46-6026 
       18.05         5.42         3.78         1.58         2.93        13.87 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7810 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 
        0.39        29.95        30.31         0.10         2.04         0.99 
TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        0.99         1.32         0.85         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8388 
        1.78         1.51         1.02         0.13         0.26        12.43 
TCGA-58-8392 TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 
       16.47        36.59        17.72        21.07        12.23        10.22 
TCGA-60-2709 TCGA-60-2715 TCGA-60-2716 TCGA-60-2723 TCGA-66-2737 TCGA-66-2742 
       49.48        35.34        48.49        35.90         2.01        21.07 
TCGA-66-2744 TCGA-66-2757 TCGA-66-2765 TCGA-66-2766 TCGA-66-2769 TCGA-66-2770 
        0.99         0.99         2.01         1.02         7.07        23.01 
TCGA-66-2773 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
        3.02         4.04         5.03        10.06        54.08         4.01 
TCGA-77-6843 TCGA-77-6845 TCGA-77-7138 TCGA-77-7142 TCGA-77-7465 TCGA-77-8008 
       73.08        23.28        11.18        42.25        15.75        86.76 
TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6798 TCGA-85-7696 
        0.33        30.81        23.44         0.36         1.12         0.59 
TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 
        0.03         1.15         0.85         1.97         0.53         1.18 
TCGA-85-8276 TCGA-85-8350 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        0.43         1.97         2.01         0.66         0.72         0.66 
TCGA-85-8582 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
        0.13         0.46         0.46         0.62         0.79        24.89 
TCGA-90-A4ED TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-8170 TCGA-98-8020 
        8.02         2.27         2.86         4.70         6.90         2.73 
TCGA-LA-A446 TCGA-MF-A522 
        1.18         3.02 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.03               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            141.34             173.79 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            12.360              9.795 
[1] "0.0 - 141.3 (12.4)" "0.0 - 173.8 (9.8)" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
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        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
[1] "hr=" "1.2"
D65V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  13Q LOSS MUTATED         1       39       73        1        30        41
  13Q LOSS WILD-TYPE       0       28       58        0        15        24
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  13Q LOSS MUTATED           35         10        2
  13Q LOSS WILD-TYPE         18         10        3
D65V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q LOSS MUTATED    56 146  23   9
  13Q LOSS WILD-TYPE  36  93  19   9
D65V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               56                 36
  T2              146                 93
  T3               23                 19
  T4                9                  9
                    vv
clus                  N0  N1  N2  N3
  13Q LOSS MUTATED   142  67  20   3
  13Q LOSS WILD-TYPE 103  36  13   2
D65V5, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0              142                103
  N1               67                 36
  N2               20                 13
  N3                3                  2
                    vv
clus                  M0  M1  MX
  13Q LOSS MUTATED   201   2  29
  13Q LOSS WILD-TYPE 132   3  18
D65V6, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  M0              201                132
  M1                2                  3
  MX               29                 18
D65V7, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED    62 172
  13Q LOSS WILD-TYPE  36 121
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED     62  172
  13Q LOSS WILD-TYPE   36  121
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE               62                 36
  MALE                172                121
D65V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                       6
  13Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  13Q LOSS MUTATED                                        0
  13Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  13Q LOSS MUTATED                                         1
  13Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q LOSS MUTATED                                                           227
  13Q LOSS WILD-TYPE                                                         146
D65V9, multiclass
                                                             clus
vv                                                            13Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              227
                                                             clus
vv                                                            13Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                146
D65V10, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED     7 227
  13Q LOSS WILD-TYPE   5 152
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      7  227
  13Q LOSS WILD-TYPE    5  152
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 7                  5
  YES              227                152
D65V11, continuous
D65V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q LOSS MUTATED   189   3   3  11
  13Q LOSS WILD-TYPE 128   4   1   7
D65V13, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  R0              189                128
  R1                3                  4
  R2                3                  1
  RX               11                  7

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    75  44
  14Q LOSS WILD-TYPE 160  78
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               119                238 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                44                 78 
$`14Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-4083 TCGA-18-4086 TCGA-21-1071 TCGA-21-1083 TCGA-21-5784 
        4.80         6.15         2.79        46.88         8.78        29.85 
TCGA-22-0940 TCGA-22-0944 TCGA-22-1012 TCGA-22-1016 TCGA-22-4596 TCGA-22-4601 
       19.99         7.33        14.10        27.02         0.56        34.75 
TCGA-22-4613 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5480 TCGA-22-5481 
       11.77        63.52        14.60        44.22        71.34        79.20 
TCGA-22-5483 TCGA-22-5491 TCGA-33-4583 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 
       18.84        56.32       141.34        14.07        54.44         2.63 
TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       61.61        31.50        28.96        22.95         5.52         4.96 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-39-5016 TCGA-39-5021 TCGA-39-5024 
        8.09         7.82         6.81        74.07        68.58        70.03 
TCGA-39-5030 TCGA-39-5035 TCGA-39-5040 TCGA-43-3394 TCGA-43-6770 TCGA-43-7656 
        1.94        15.58        17.06        27.02        10.19         6.97 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 
        1.58        66.51         6.35         9.96        13.87         0.39 
TCGA-52-7809 TCGA-56-5897 TCGA-56-8503 TCGA-56-A4BY TCGA-58-8387 TCGA-58-8388 
        5.42         0.10         1.35         0.99        13.25        12.43 
TCGA-58-8390 TCGA-58-8391 TCGA-58-A46K TCGA-60-2695 TCGA-60-2709 TCGA-60-2710 
        8.94        44.09        34.36        21.07        49.48        66.51 
TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 
        9.01        56.91        50.33        26.79        11.77        16.96 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2769 
        1.02         2.01         0.92         0.99        20.98         7.07 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2786 TCGA-66-2787 TCGA-66-2795 TCGA-68-7757 
       23.01         3.02        25.97        40.01         4.01         6.94 
TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-7139 TCGA-77-7141 
        8.02         3.12        29.56        73.08        89.95         0.49 
TCGA-77-7338 TCGA-77-8008 TCGA-77-8009 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6560 
        0.16        86.76        53.95         0.33        23.44         0.36 
TCGA-85-6798 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8052 
        1.12         1.15         1.25         1.97         0.85         0.53 
TCGA-85-8070 TCGA-85-8072 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8352 
        1.41         1.18         0.36         1.45         1.78         2.20 
TCGA-85-8580 TCGA-85-8664 TCGA-85-A4CL TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.89         0.10         0.46         1.55         2.93         0.59 
TCGA-90-A4ED TCGA-90-A4EE TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-98-7454 
        8.02        10.88         0.16         4.70        44.15         8.42 
TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-LA-A446 TCGA-NC-A5HE 
       13.58         7.33        10.13         1.18        56.61 

$`14Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       13.02        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1072 TCGA-21-1075 
       90.51         3.02        27.16       119.54        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI 
      119.80        31.63        88.08        21.73        10.82        32.19 
TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 TCGA-22-1011 TCGA-22-1017 TCGA-22-4591 
       14.93         4.31        64.21         1.74        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4595 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 
       35.08        48.33        24.13        38.17        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5478 TCGA-22-5479 
       19.30         9.53        31.73        64.90         0.79        54.28 
TCGA-22-5482 TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 
       11.74        30.08        62.86        16.60         7.63       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 
       97.94        43.10       173.79       103.53        10.98        19.76 
TCGA-33-6738 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       26.99        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 
        9.04        10.82         7.73        14.07         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-4141 TCGA-37-5819 
        0.43         0.39         6.54         7.46         0.39         3.39 
TCGA-39-5011 TCGA-39-5019 TCGA-39-5022 TCGA-39-5027 TCGA-39-5028 TCGA-39-5029 
       47.80        44.71        55.17        60.76         1.71        24.33 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       27.35        36.39        35.64        35.70        17.88        24.59 
TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       22.49        13.12        11.74        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-43-8118 TCGA-46-6025 
       12.46         5.42         3.78         6.64         2.93        10.65 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95        17.79        30.31         8.75        27.45 
TCGA-56-1622 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
       28.93         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        1.45         1.32         0.85         0.20         0.03         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.99         1.51         1.02         0.13         0.26         0.03 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       16.47         0.66        36.59        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.70        80.42 
TCGA-60-2711 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       41.39        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       29.85        35.90        23.57        43.10         2.01        21.07 
TCGA-66-2744 TCGA-66-2756 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.99         0.99        25.02         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
        2.01         2.01        19.00         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2788 TCGA-66-2789 
        3.98        12.00        24.95         1.94        22.98         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 
       22.98         5.03        30.02        10.06        54.08        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        2.73         6.64        75.09        23.28        11.18        20.78 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       42.25        70.09       106.95        46.78        15.75         6.51 
TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       82.92       104.09        27.39         9.63        55.33        35.90 
TCGA-77-A5GB TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 
       30.81         0.79         0.59         0.33         1.61         0.03 
TCGA-85-8049 TCGA-85-8071 TCGA-85-8276 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 
        1.97         0.46         0.43         1.97         1.81         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-8666 
        2.01         0.66         0.72         0.66         0.13         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7964 
        0.82         0.62         0.79         0.43        24.89         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        2.70         3.48         4.01         5.26         2.27         2.86 
TCGA-96-7544 TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-J1-A4AH TCGA-L3-A4E7 
       39.88         6.18         6.90         2.73         7.30         1.15 
TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG TCGA-NC-A5HI 
       14.76         3.02        50.86        37.32 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.10               0.03 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            141.34             173.79 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              8.94              12.41 
[1] "0.1 - 141.3 (8.9)"  "0.0 - 173.8 (12.4)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D66V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  14Q LOSS MUTATED         0       29       43        0        14        20
  14Q LOSS WILD-TYPE       1       38       88        1        31        45
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  14Q LOSS MUTATED           15          6        0
  14Q LOSS WILD-TYPE         38         14        5
D66V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED    38  75   9   5
  14Q LOSS WILD-TYPE  54 164  33  13
D66V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1               38                 54
  T2               75                164
  T3                9                 33
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  14Q LOSS MUTATED    81  38   7   0
  14Q LOSS WILD-TYPE 164  65  26   5
D66V5, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0               81                164
  N1               38                 65
  N2                7                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  14Q LOSS MUTATED   109   0  17
  14Q LOSS WILD-TYPE 224   5  30
D66V6, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  M0              109                224
  M1                0                  5
  MX               17                 30
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED    34  93
  14Q LOSS WILD-TYPE  64 200
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     34   93
  14Q LOSS WILD-TYPE   64  200
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               34                 64
  MALE                 93                200
D66V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                       5
  14Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  14Q LOSS MUTATED                                        0
  14Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  14Q LOSS MUTATED                                         1
  14Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q LOSS MUTATED                                                           121
  14Q LOSS WILD-TYPE                                                         252
D66V9, multiclass
                                                             clus
vv                                                            14Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              121
                                                             clus
vv                                                            14Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                252
D66V10, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     4 123
  14Q LOSS WILD-TYPE   8 256
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      4  123
  14Q LOSS WILD-TYPE    8  256
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 4                  8
  YES              123                256
D66V11, continuous
D66V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q LOSS MUTATED   104   2   1   3
  14Q LOSS WILD-TYPE 213   5   3  15
D66V13, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  R0              104                213
  R1                2                  5
  R2                1                  3
  RX                3                 15

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED    55  37
  15Q LOSS WILD-TYPE 180  85
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                92                265 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                37                 85 
$`15Q LOSS MUTATED`
TCGA-18-3406 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       12.16        11.34        28.34         3.02       119.54        46.88 
TCGA-21-1072 TCGA-21-1080 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1012 
       99.16       122.43        10.82         7.33        14.93        14.10 
TCGA-22-1017 TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-5471 
       48.82        48.33        24.13         0.56        38.17        31.73 
TCGA-22-5480 TCGA-33-4533 TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 
       71.34       114.05       103.53        54.44        10.98        61.61 
TCGA-34-5929 TCGA-37-3783 TCGA-37-4130 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 
        4.96         3.95         8.09         7.82         0.39         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5021 TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 
       47.80        74.07        68.58         1.71        24.33         1.94 
TCGA-39-5031 TCGA-39-5034 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-5668 
       27.35        36.39        17.06        22.49        13.12        11.47 
TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7810 TCGA-56-7223 TCGA-56-7580 
        9.96        10.65        13.87        30.31         0.99         1.32 
TCGA-56-7822 TCGA-56-8503 TCGA-56-A49D TCGA-58-8386 TCGA-60-2698 TCGA-60-2703 
        0.03         1.35         0.99         0.03        10.22        96.82 
TCGA-60-2708 TCGA-60-2712 TCGA-60-2714 TCGA-60-2720 TCGA-66-2737 TCGA-66-2742 
       80.42         9.01        50.33         3.16         2.01        21.07 
TCGA-66-2756 TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-8250 
        0.99         5.03        10.06        54.08        49.05         8.02 
TCGA-77-6842 TCGA-77-7139 TCGA-77-7337 TCGA-77-8007 TCGA-77-8009 TCGA-77-8130 
       29.56        89.95       106.95         6.51        53.95        82.92 
TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6560 TCGA-85-7696 TCGA-85-7843 
       55.33         0.33        23.44         0.36         0.59         1.15 
TCGA-85-8072 TCGA-85-8288 TCGA-85-8479 TCGA-85-8666 TCGA-85-A50M TCGA-85-A53L 
        1.18         1.78         0.72         0.46         0.62         0.43 
TCGA-90-7767 TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 
        2.93         8.02        10.88         5.26         2.27         0.16 
TCGA-MF-A522 TCGA-NC-A5HI 
        3.02        37.32 

$`15Q LOSS WILD-TYPE`
TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
        4.47        81.07        79.46         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       90.51        27.16        70.13        60.89        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1002 TCGA-22-1005 
       29.85        21.73        32.19        19.99         4.31        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-4591 TCGA-22-4593 TCGA-22-4601 TCGA-22-4604 
        1.74        27.02        20.45        35.08        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5472 TCGA-22-5473 
       32.02        19.30         9.53        11.77        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22         0.79        54.28        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-6737 
       97.94        43.10       173.79       141.34        14.07        19.76 
TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
       26.99         2.63        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 
       14.07        22.95         5.52         1.08         0.43         0.39 
TCGA-37-4129 TCGA-37-4132 TCGA-37-4135 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 
        6.54         7.46         6.81        44.71        55.17        70.03 
TCGA-39-5027 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       60.76        15.58        35.64        35.70        17.88        24.59 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       27.02        11.74        18.05        12.36        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
        5.42         3.78         6.97         1.58        66.51         6.64 
TCGA-43-8116 TCGA-43-8118 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 
        6.35         2.93         0.39         0.39        29.95        17.79 
TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
        5.42         8.75        27.45        28.93         0.10         2.04 
TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7579 TCGA-56-7582 TCGA-56-7730 
        1.02         0.99         0.43         1.45         0.85         0.20 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43         8.94        44.09        16.47         0.66 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 
       34.36        36.59        17.72        21.07         3.58        12.23 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       37.94        92.71        21.70        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
       56.91        35.34        48.49        42.61        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 
       35.90        23.57        26.79        11.77        16.96        43.10 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 
        0.99         1.02         2.01         0.92         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
       12.03         3.98        12.00        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2795 
       40.01        22.98         4.04        22.98        30.02         4.01 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 
        2.73         6.64         6.94         3.12        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        11.18        20.78         0.49        42.25        70.09 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8139 TCGA-77-8144 
        0.16        46.78        15.75        86.76       104.09        27.39 
TCGA-77-8148 TCGA-77-8154 TCGA-77-A5GB TCGA-85-6561 TCGA-85-6798 TCGA-85-7697 
        9.63        35.90        30.81         0.79         1.12         0.33 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 
        1.61         0.03         1.25         1.97         0.85         1.97 
TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 
        0.53         1.41         0.46         0.43         0.36         1.45 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A4CL TCGA-85-A4QR 
        0.66         0.89         0.13         0.10         0.46         0.82 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 
        0.79        24.89         1.55         0.59         3.29         2.70 
TCGA-92-7341 TCGA-92-8063 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 
        3.48         4.01         2.86         4.70        39.88        44.15 
TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
        6.18         6.90         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HE 
       10.13         7.30         1.15        14.76         1.18        56.61 
TCGA-NC-A5HG 
       50.86 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.03               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            122.43             173.79 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             10.93              12.00 
[1] "0.0 - 122.4 (10.9)" "0.0 - 173.8 (12.0)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
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  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
[1] "hr=" "1"  
D67V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  15Q LOSS MUTATED         0       13       27        0         8        26
  15Q LOSS WILD-TYPE       1       54      104        1        37        39
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  15Q LOSS MUTATED           17          7        2
  15Q LOSS WILD-TYPE         36         13        3
D67V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED    19  59  15   7
  15Q LOSS WILD-TYPE  73 180  27  11
D67V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1               19                 73
  T2               59                180
  T3               15                 27
  T4                7                 11
                    vv
clus                  N0  N1  N2  N3
  15Q LOSS MUTATED    52  35  11   1
  15Q LOSS WILD-TYPE 193  68  22   4
D67V5, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0               52                193
  N1               35                 68
  N2               11                 22
  N3                1                  4
                    vv
clus                  M0  M1  MX
  15Q LOSS MUTATED    87   2  10
  15Q LOSS WILD-TYPE 246   3  37
D67V6, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  M0               87                246
  M1                2                  3
  MX               10                 37
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    29  71
  15Q LOSS WILD-TYPE  69 222
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     29   71
  15Q LOSS WILD-TYPE   69  222
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE               29                 69
  MALE                 71                222
D67V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                       1
  15Q LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  15Q LOSS MUTATED                                        1
  15Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  15Q LOSS MUTATED                                         1
  15Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q LOSS MUTATED                                                            97
  15Q LOSS WILD-TYPE                                                         276
D67V9, multiclass
                                                             clus
vv                                                            15Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               97
                                                             clus
vv                                                            15Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                276
D67V10, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED     6  94
  15Q LOSS WILD-TYPE   6 285
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED      6   94
  15Q LOSS WILD-TYPE    6  285
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                 6                  6
  YES               94                285
D67V11, continuous
D67V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q LOSS MUTATED    83   2   2   4
  15Q LOSS WILD-TYPE 234   5   2  14
D67V13, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  R0               83                234
  R1                2                  5
  R2                2                  2
  RX                4                 14

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    85  29
  16P LOSS WILD-TYPE 150  93
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               114                243 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                29                 93 
$`16P LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 TCGA-21-1075 
        4.80        59.51         6.15         3.02       119.54        70.13 
TCGA-21-1076 TCGA-21-1080 TCGA-21-5786 TCGA-22-0940 TCGA-22-1002 TCGA-22-1012 
       60.89       122.43        21.73        19.99         4.31        14.10 
TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5478 TCGA-22-5480 
       48.33        38.17        13.12        11.77         0.79        71.34 
TCGA-22-5482 TCGA-33-4533 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2609 
       11.74       114.05        19.76        26.99         2.63        31.23 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-39-5011 TCGA-39-5016 
        9.04        10.82        22.95         5.52        47.80        74.07 
TCGA-39-5021 TCGA-39-5027 TCGA-39-5028 TCGA-39-5040 TCGA-43-3394 TCGA-43-6143 
       68.58        60.76         1.71        17.06        27.02        12.36 
TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 
        6.97         1.58        66.51         6.35         9.96        10.65 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
       17.79         5.42        30.31         1.32         0.03         1.35 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-58-8391 TCGA-58-8392 
        1.12         0.99         1.51         0.99        44.09        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-60-2695 TCGA-60-2708 TCGA-60-2714 
        0.66        34.36        36.59        21.07        80.42        50.33 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2724 TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 
       42.61         3.16        23.57        16.96        43.10         1.02 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2769 TCGA-66-2781 
        0.92         0.99        20.98         0.99         7.07         3.98 
TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2790 TCGA-66-2792 
       12.00         1.94        25.97        40.01        22.98        30.02 
TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-6842 TCGA-77-7139 TCGA-77-7142 
       49.05         6.64         3.12        29.56        89.95        42.25 
TCGA-77-7463 TCGA-77-8130 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6798 
       46.78        82.92        35.90         0.33        23.44         1.12 
TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8052 TCGA-85-8070 TCGA-85-8277 
        1.61         0.03         1.97         0.53         1.41         0.36 
TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 TCGA-85-8580 TCGA-85-8664 
        1.81         2.20         1.78         0.66         0.89         0.10 
TCGA-85-8666 TCGA-85-A4QR TCGA-85-A53L TCGA-90-7767 TCGA-90-A4EE TCGA-92-8064 
        0.46         0.82         0.43         2.93        10.88         5.26 
TCGA-94-7557 TCGA-96-7544 TCGA-96-8169 TCGA-L3-A4E7 TCGA-L3-A524 TCGA-NC-A5HG 
        0.16        39.88         6.18         1.15        14.76        50.86 

$`16P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        28.34        24.92         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1078 
       90.51        27.16        46.88        99.16        34.78        15.55 
TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
       31.69         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 
       29.85        10.82        32.19         7.33        14.93        64.21 
TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 
        1.74        27.02        48.82        20.45        35.08        24.13 
TCGA-22-4596 TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
        0.56        34.75        32.02        19.30         9.53        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5481 
       64.90        63.52        14.60        44.22        54.28        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 
       97.94        43.10       173.79       103.53       141.34        14.07 
TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 
       54.44        10.98        61.61        31.50        28.96        32.84 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 TCGA-34-5241 TCGA-34-5929 
       50.24        51.78        32.68         7.73        14.07         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5019 
        7.46         7.82         6.81         0.39         3.39        44.71 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 
       55.17        70.03        24.33         1.94        27.35        36.39 
TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 TCGA-43-2578 
       15.58        35.64        35.70        17.88        24.59        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 
       13.12        11.74        11.47        18.05        12.46        10.19 
TCGA-43-6771 TCGA-43-6773 TCGA-43-8115 TCGA-43-8118 TCGA-46-6026 TCGA-51-4079 
        5.42         3.78         6.64         2.93        13.87         0.39 
TCGA-51-4080 TCGA-51-4081 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        0.39        29.95         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 
        0.85         0.20         5.82         1.78         1.18         2.07 
TCGA-56-8626 TCGA-56-8628 TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 
        0.56         0.53         1.02         0.13         0.26         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
       13.25        12.43         8.94        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2709 
       10.22        96.82        37.94        92.71        21.70        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       66.51        41.39         9.01        56.91        35.34        48.49 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2725 TCGA-60-2726 TCGA-66-2737 
       32.28        29.85        35.90        26.79        11.77         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 TCGA-66-2759 TCGA-66-2765 
       21.07         0.99         2.01         0.99        25.02         2.01 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2783 TCGA-66-2788 TCGA-66-2789 
        2.01        19.00        12.03        24.95        22.98         4.04 
TCGA-66-2791 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 
        5.03        10.06        54.08         4.01         2.73         6.94 
TCGA-68-8250 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        8.02        73.08        75.09        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 
        0.49        70.09       106.95         0.16        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 
       86.76        53.95       104.09        27.39         9.63        55.33 
TCGA-77-A5GB TCGA-85-6560 TCGA-85-6561 TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 
       30.81         0.36         0.79         0.59         0.33         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8276 
        1.25         0.85         1.97         0.46         1.18         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 
        1.45         1.78         1.97         2.01         0.72         0.66 
TCGA-85-8582 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.13         0.46         0.62         0.79        24.89         1.55 
TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 
        0.59         3.29         8.02         2.70         3.48         4.01 
TCGA-92-8065 TCGA-94-7033 TCGA-94-7943 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 
        2.27         2.86         4.70        44.15         6.90         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-LA-A446 
        2.73        13.58         7.33        10.13         7.30         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
        3.02        56.61        37.32 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.03               0.03 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            122.43             173.79 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
             11.31              11.77 
[1] "0.0 - 122.4 (11.3)" "0.0 - 173.8 (11.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D68V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16P LOSS MUTATED         0       17       44        0         9        26
  16P LOSS WILD-TYPE       1       50       87        1        36        39
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16P LOSS MUTATED           21          4        0
  16P LOSS WILD-TYPE         32         16        5
D68V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED    21  78  16   6
  16P LOSS WILD-TYPE  71 161  26  12
D68V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1               21                 71
  T2               78                161
  T3               16                 26
  T4                6                 12
                    vv
clus                  N0  N1  N2  N3
  16P LOSS MUTATED    78  33  10   0
  16P LOSS WILD-TYPE 167  70  23   5
D68V5, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0               78                167
  N1               33                 70
  N2               10                 23
  N3                0                  5
                    vv
clus                  M0  M1  MX
  16P LOSS MUTATED   109   0  12
  16P LOSS WILD-TYPE 224   5  35
D68V6, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  M0              109                224
  M1                0                  5
  MX               12                 35
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    35  86
  16P LOSS WILD-TYPE  63 207
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     35   86
  16P LOSS WILD-TYPE   63  207
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               35                 63
  MALE                 86                207
D68V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                       7
  16P LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16P LOSS MUTATED                                        0
  16P LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16P LOSS MUTATED                                         0
  16P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P LOSS MUTATED                                                           114
  16P LOSS WILD-TYPE                                                         259
D68V9, multiclass
                                                             clus
vv                                                            16P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              114
                                                             clus
vv                                                            16P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                259
D68V10, binary
                    cls
clus                   0   1
  16P LOSS MUTATED     3 118
  16P LOSS WILD-TYPE   9 261
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      3  118
  16P LOSS WILD-TYPE    9  261
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 3                  9
  YES              118                261
D68V11, continuous
D68V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P LOSS MUTATED    99   1   0   4
  16P LOSS WILD-TYPE 218   6   4  14
D68V13, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  R0               99                218
  R1                1                  6
  R2                0                  4
  RX                4                 14

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    89  38
  16Q LOSS WILD-TYPE 146  84
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               127                230 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                38                 84 
$`16Q LOSS MUTATED`
TCGA-18-3410 TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-5592 TCGA-21-1070 
        4.80        59.51         1.61         6.15         3.02       119.54 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1080 TCGA-21-1083 TCGA-22-0940 TCGA-22-1002 
       70.13        60.89       122.43         8.78        19.99         4.31 
TCGA-22-1012 TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-5473 TCGA-22-5478 
       14.10        48.33        38.17        13.12        63.52         0.79 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5489 TCGA-33-4533 TCGA-33-4583 
       71.34        79.20        11.74        62.86       114.05       141.34 
TCGA-33-4586 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2609 
       14.07        19.76        26.99         2.63        31.50        31.23 
TCGA-34-5231 TCGA-34-5236 TCGA-34-5239 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
       50.24         9.04        10.82        22.95         5.52         4.96 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 
       47.80        74.07        44.71        60.76         1.71         1.94 
TCGA-39-5040 TCGA-43-2578 TCGA-43-3394 TCGA-43-3920 TCGA-43-7657 TCGA-43-7658 
       17.06        22.49        27.02        11.74         1.58        66.51 
TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-52-7622 TCGA-52-7809 
        6.35         9.96        10.65        13.87        17.79         5.42 
TCGA-52-7810 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-56-7730 TCGA-56-7822 
       30.31         0.99         0.43         1.32         0.20         0.03 
TCGA-56-8503 TCGA-56-8626 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-58-8387 
        1.35         0.56         0.99         1.51         0.99        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L 
       12.43         8.94        44.09        16.47         0.66        36.59 
TCGA-60-2695 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 
       21.07        66.51        41.39        56.91        50.33        42.61 
TCGA-60-2720 TCGA-66-2727 TCGA-66-2734 TCGA-66-2753 TCGA-66-2755 TCGA-66-2757 
        3.16        16.96        43.10         1.02         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2767 TCGA-66-2769 TCGA-66-2778 
       20.98        25.02         0.99         2.01         7.07        19.00 
TCGA-66-2782 TCGA-66-2787 TCGA-66-2789 TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 
       12.00        40.01         4.04        22.98        30.02        10.06 
TCGA-66-2800 TCGA-68-7756 TCGA-68-8251 TCGA-77-6842 TCGA-77-7139 TCGA-77-7142 
       49.05         6.64         3.12        29.56        89.95        42.25 
TCGA-77-7463 TCGA-77-8139 TCGA-77-8153 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6561 
       46.78       104.09        55.33         0.33        23.44         0.79 
TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 TCGA-85-7950 TCGA-85-8071 TCGA-85-8353 
        1.12         1.61         0.03         1.97         0.46         1.78 
TCGA-85-8355 TCGA-85-8580 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-90-7767 
        0.66         0.89         0.10         0.46         0.82         2.93 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8064 TCGA-92-8065 TCGA-94-7557 TCGA-96-8169 
        8.02        10.88         5.26         2.27         0.16         6.18 
TCGA-NC-A5HG 
       50.86 

$`16Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        81.07        79.46        46.52        11.34 
TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-18-4086 TCGA-18-4721 
       13.02        28.34        24.92        43.76         2.79        90.51 
TCGA-18-5595 TCGA-21-1071 TCGA-21-1072 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       27.16        46.88        99.16        34.78        15.55        31.69 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
        9.30       119.80        31.63        88.08        29.85        21.73 
TCGA-21-5787 TCGA-21-A5DI TCGA-22-0944 TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 
       10.82        32.19         7.33        14.93        64.21         1.74 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        35.08        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 
       34.75        32.02        19.30         9.53        11.77        31.73 
TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5483 TCGA-22-5485 
       64.90        14.60        44.22        54.28        18.84        30.08 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60         7.63        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4587 TCGA-33-4589 TCGA-34-2600 TCGA-34-2605 TCGA-34-2608 
      103.53        54.44        10.98        61.61        28.96        32.84 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5240 TCGA-34-5241 TCGA-34-7107 TCGA-37-3783 
       51.78        32.68         7.73        14.07         1.08         3.95 
TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 
        0.43         0.39         6.54         8.09         7.46         7.82 
TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
        6.81         0.39         3.39        68.58        55.17        70.03 
TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33        27.35        36.39        15.58        35.64        35.70 
TCGA-39-5039 TCGA-43-2576 TCGA-43-2581 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       17.88        24.59        13.12        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7656 TCGA-43-8115 
       12.46        10.19         5.42         3.78         6.97         6.64 
TCGA-43-8118 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 TCGA-52-7811 TCGA-52-7812 
        2.93         0.39         0.39        29.95         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 TCGA-56-7579 
       28.93         0.10         2.04         1.02         0.99         1.45 
TCGA-56-7582 TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8628 
        0.85         5.82         1.78         1.18         2.07         0.53 
TCGA-56-8629 TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-A46K 
        1.12         1.02         0.13         0.26         0.03        34.36 
TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 
       17.72         3.58        12.23        10.22        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2712 TCGA-60-2715 
       92.71        21.70        80.42        49.48         9.01        35.34 
TCGA-60-2716 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       48.49        32.28        29.85        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2756 
       11.77         2.01        21.07         0.99         2.01         0.99 
TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 
        2.01         1.02         2.01        23.01        19.00         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
        2.01        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2788 TCGA-66-2791 TCGA-66-2794 TCGA-66-2795 TCGA-68-7755 TCGA-68-7757 
       22.98         5.03        54.08         4.01         2.73         6.94 
TCGA-68-8250 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 
        8.02        73.08        75.09        23.28        11.18        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 
        0.49        70.09       106.95         0.16        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8144 TCGA-77-8148 TCGA-77-8154 
       86.76        53.95        82.92        27.39         9.63        35.90 
TCGA-77-A5GB TCGA-85-6560 TCGA-85-7696 TCGA-85-7697 TCGA-85-7843 TCGA-85-7844 
       30.81         0.36         0.59         0.33         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 
        0.85         1.97         0.53         1.41         1.18         0.43 
TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.36         1.45         1.78         1.97         1.81         2.20 
TCGA-85-8354 TCGA-85-8479 TCGA-85-8481 TCGA-85-8582 TCGA-85-A4CL TCGA-85-A50M 
        2.01         0.72         0.66         0.13         0.46         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7769 TCGA-90-7964 
        0.79         0.43        24.89         1.55         0.59         3.29 
TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-94-7033 TCGA-94-7943 TCGA-96-7544 
        2.70         3.48         4.01         2.86         4.70        39.88 
TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 
       44.15         6.90         8.42         2.73        13.58         7.33 
TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 
       10.13         7.30         1.15        14.76         1.18         3.02 
TCGA-NC-A5HE TCGA-NC-A5HI 
       56.61        37.32 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.03               0.03 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            141.34             173.79 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
             11.74              11.62 
[1] "0.0 - 141.3 (11.7)" "0.0 - 173.8 (11.6)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
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"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D69V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  16Q LOSS MUTATED         0       19       47        0        13        26
  16Q LOSS WILD-TYPE       1       48       84        1        32        39
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  16Q LOSS MUTATED           21          9        0
  16Q LOSS WILD-TYPE         32         11        5
D69V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED    27  87  16   7
  16Q LOSS WILD-TYPE  65 152  26  11
D69V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               27                 65
  T2               87                152
  T3               16                 26
  T4                7                 11
                    vv
clus                  N0  N1  N2  N3
  16Q LOSS MUTATED    87  35  12   3
  16Q LOSS WILD-TYPE 158  68  21   2
D69V5, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0               87                158
  N1               35                 68
  N2               12                 21
  N3                3                  2
                    vv
clus                  M0  M1  MX
  16Q LOSS MUTATED   123   0  12
  16Q LOSS WILD-TYPE 210   5  35
D69V6, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  M0              123                210
  M1                0                  5
  MX               12                 35
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    41  96
  16Q LOSS WILD-TYPE  57 197
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     41   96
  16Q LOSS WILD-TYPE   57  197
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               41                 57
  MALE                 96                197
D69V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                       6
  16Q LOSS WILD-TYPE                                     6
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  16Q LOSS MUTATED                                        0
  16Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  16Q LOSS MUTATED                                         0
  16Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q LOSS MUTATED                                                           131
  16Q LOSS WILD-TYPE                                                         242
D69V9, multiclass
                                                             clus
vv                                                            16Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              131
                                                             clus
vv                                                            16Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        6
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                242
D69V10, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     5 132
  16Q LOSS WILD-TYPE   7 247
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      5  132
  16Q LOSS WILD-TYPE    7  247
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 5                  7
  YES              132                247
D69V11, continuous
D69V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q LOSS MUTATED   107   1   2   4
  16Q LOSS WILD-TYPE 210   6   2  14
D69V13, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  R0              107                210
  R1                1                  6
  R2                2                  2
  RX                4                 14

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED   127  70
  17P LOSS WILD-TYPE 108  52
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               197                160 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                70                 52 
$`17P LOSS MUTATED`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 TCGA-18-3415 
       12.16         4.47         4.80        46.52        13.02        59.51 
TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 
       28.34         1.61        43.76        90.51       119.54        46.88 
TCGA-21-1075 TCGA-21-1077 TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       70.13        34.78       122.43       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5786 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       88.08        21.73        10.82         7.33        14.93         4.31 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-4591 TCGA-22-4594 TCGA-22-4595 
        1.74        14.10        27.02        20.45        48.33        24.13 
TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
        0.56        38.17        13.12        32.02        19.30         9.53 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5477 TCGA-22-5478 TCGA-22-5480 TCGA-22-5481 
       64.90        63.52        44.22         0.79        71.34        79.20 
TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4547 TCGA-33-4583 
       18.84        62.86        56.32        16.60        43.10       141.34 
TCGA-33-4586 TCGA-33-4587 TCGA-33-6738 TCGA-34-2600 TCGA-34-2604 TCGA-34-2608 
       14.07        54.44        26.99        61.61        31.50        32.84 
TCGA-34-5231 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4133 TCGA-37-4135 
       50.24         3.95         0.43         0.39         7.82         6.81 
TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 
        0.39         3.39        74.07        70.03        60.76        24.33 
TCGA-39-5030 TCGA-39-5034 TCGA-39-5035 TCGA-39-5040 TCGA-43-2576 TCGA-43-2581 
        1.94        36.39        15.58        17.06        24.59        13.12 
TCGA-43-3394 TCGA-43-5668 TCGA-43-6143 TCGA-43-7656 TCGA-43-7658 TCGA-43-8115 
       27.02        11.47        12.36         6.97        66.51         6.64 
TCGA-43-8116 TCGA-46-6026 TCGA-51-4080 TCGA-52-7622 TCGA-52-7810 TCGA-52-7812 
        6.35        13.87         0.39        17.79        30.31        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 TCGA-56-7822 
       28.93         0.10         0.99         1.45         1.32         0.03 
TCGA-56-8503 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        1.35         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-58-8386 
        1.12         0.99         1.51         0.99         1.02         0.03 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8393 TCGA-58-A46L TCGA-60-2695 
       13.25        12.43         8.94         0.66        36.59        21.07 
TCGA-60-2696 TCGA-60-2698 TCGA-60-2703 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
        3.58        10.22        96.82        92.71        21.70        80.42 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2719 
       66.51        41.39         9.01        56.91        50.33        42.61 
TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2725 TCGA-66-2727 TCGA-66-2734 
        3.16        32.28        29.85        26.79        16.96        43.10 
TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2763 
       21.07         1.02         2.01         0.99        25.02         0.99 
TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2771 TCGA-66-2773 
        1.02         2.01         2.01         7.07        19.00         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 
        2.01        12.03         3.98        12.00        24.95         1.94 
TCGA-66-2786 TCGA-66-2788 TCGA-66-2789 TCGA-66-2791 TCGA-66-2793 TCGA-66-2795 
       25.97        22.98         4.04         5.03        10.06         4.01 
TCGA-68-7757 TCGA-77-6842 TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7141 
        6.94        29.56        75.09        23.28        89.95         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
       70.09       106.95         0.16        86.76        53.95        82.92 
TCGA-77-8139 TCGA-77-8148 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 
      104.09         9.63        35.90        30.81        23.44         0.36 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7844 TCGA-85-8052 TCGA-85-8070 TCGA-85-8276 
        0.59         0.33         1.25         0.53         1.41         0.43 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8479 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR 
        1.45         1.78         0.72         0.46         0.46         0.82 
TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7964 TCGA-90-A4ED TCGA-92-7341 
        0.43         1.55         2.93         3.29         8.02         3.48 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 
        4.01         2.27         2.86        39.88        44.15         6.90 
TCGA-98-8021 TCGA-98-8022 TCGA-L3-A4E7 TCGA-NC-A5HG TCGA-NC-A5HI 
       13.58         7.33         1.15        50.86        37.32 

$`17P LOSS WILD-TYPE`
TCGA-18-3408 TCGA-18-3409 TCGA-18-3412 TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 
       81.07        79.46        11.34        24.92         6.15         2.79 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1076 TCGA-21-1078 TCGA-21-1079 
        3.02        27.16        99.16        60.89        15.55        31.69 
TCGA-21-1081 TCGA-21-5784 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1005 TCGA-22-1017 
        9.30        29.85        32.19        19.99        64.21        48.82 
TCGA-22-4593 TCGA-22-4601 TCGA-22-4613 TCGA-22-5471 TCGA-22-5474 TCGA-22-5479 
       35.08        34.75        11.77        31.73        14.60        54.28 
TCGA-22-5482 TCGA-22-5485 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4566 
       11.74        30.08         7.63       114.05        97.94       173.79 
TCGA-33-4582 TCGA-33-4589 TCGA-33-6737 TCGA-34-2596 TCGA-34-2605 TCGA-34-2609 
      103.53        10.98        19.76         2.63        28.96        31.23 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 
       51.78        32.68         9.04        10.82         7.73        14.07 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-4129 TCGA-37-4130 
       22.95         5.52         4.96         1.08         6.54         8.09 
TCGA-37-4132 TCGA-39-5011 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5028 
        7.46        47.80        44.71        68.58        55.17         1.71 
TCGA-39-5031 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2578 TCGA-43-3920 
       27.35        35.64        35.70        17.88        22.49        11.74 
TCGA-43-5670 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 
       18.05        12.46        10.19         5.42         3.78         1.58 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 
        2.93         9.96        10.65         0.39        29.95         5.42 
TCGA-52-7811 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7582 
        8.75         2.04         1.02         0.99         0.43         0.85 
TCGA-56-7730 TCGA-56-8504 TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8391 TCGA-58-8392 
        0.20         5.82         0.13         0.26        44.09        16.47 
TCGA-58-A46K TCGA-58-A46N TCGA-60-2697 TCGA-60-2704 TCGA-60-2709 TCGA-60-2715 
       34.36        17.72        12.23        37.94        49.48        35.34 
TCGA-60-2716 TCGA-60-2723 TCGA-60-2724 TCGA-60-2726 TCGA-66-2737 TCGA-66-2744 
       48.49        35.90        23.57        11.77         2.01         0.99 
TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2765 TCGA-66-2770 TCGA-66-2778 
        0.92         0.99        20.98         2.01        23.01        19.00 
TCGA-66-2787 TCGA-66-2790 TCGA-66-2792 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
       40.01        22.98        30.02        54.08        49.05         2.73 
TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6843 TCGA-77-7138 TCGA-77-7140 
        6.64         8.02         3.12        73.08        11.18        20.78 
TCGA-77-7142 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8144 TCGA-77-8153 
       42.25        46.78        15.75         6.51        27.39        55.33 
TCGA-77-8156 TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        0.33         0.79         1.12         1.61         0.03         1.15 
TCGA-85-7950 TCGA-85-8048 TCGA-85-8049 TCGA-85-8071 TCGA-85-8072 TCGA-85-8277 
        1.97         0.85         1.97         0.46         1.18         0.36 
TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.97         1.81         2.20         1.78         2.01         0.66 
TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-A50M TCGA-85-A513 
        0.66         0.89         0.13         0.10         0.62         0.79 
TCGA-90-6837 TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-94-7557 
       24.89         0.59        10.88         2.70         5.26         0.16 
TCGA-94-7943 TCGA-96-8169 TCGA-98-7454 TCGA-98-8020 TCGA-98-8023 TCGA-J1-A4AH 
        4.70         6.18         8.42         2.73        10.13         7.30 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       14.76         1.18         3.02        56.61 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.03               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            141.34             173.79 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            13.120             10.735 
[1] "0.0 - 141.3 (13.1)" "0.0 - 173.8 (10.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
[1] "hr=" "1.1"
D70V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17P LOSS MUTATED         0       40       71        0        23        34
  17P LOSS WILD-TYPE       1       27       60        1        22        31
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17P LOSS MUTATED           34         12        3
  17P LOSS WILD-TYPE         19          8        2
D70V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS MUTATED    55 129  25   8
  17P LOSS WILD-TYPE  37 110  17  10
D70V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               55                 37
  T2              129                110
  T3               25                 17
  T4                8                 10
                    vv
clus                  N0  N1  N2  N3
  17P LOSS MUTATED   132  53  25   4
  17P LOSS WILD-TYPE 113  50   8   1
D70V5, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0              132                113
  N1               53                 50
  N2               25                  8
  N3                4                  1
                    vv
clus                  M0  M1  MX
  17P LOSS MUTATED   185   3  26
  17P LOSS WILD-TYPE 148   2  21
D70V6, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  M0              185                148
  M1                3                  2
  MX               26                 21
D70V7, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    53 164
  17P LOSS WILD-TYPE  45 129
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     53  164
  17P LOSS WILD-TYPE   45  129
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE               53                 45
  MALE                164                129
D70V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                       7
  17P LOSS WILD-TYPE                                     5
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17P LOSS MUTATED                                        2
  17P LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17P LOSS MUTATED                                         1
  17P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P LOSS MUTATED                                                           207
  17P LOSS WILD-TYPE                                                         166
D70V9, multiclass
                                                             clus
vv                                                            17P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              207
                                                             clus
vv                                                            17P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                166
D70V10, binary
                    cls
clus                   0   1
  17P LOSS MUTATED    10 207
  17P LOSS WILD-TYPE   2 172
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED     10  207
  17P LOSS WILD-TYPE    2  172
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                10                  2
  YES              207                172
D70V11, continuous
D70V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P LOSS MUTATED   186   4   2   8
  17P LOSS WILD-TYPE 131   3   2  10
D70V13, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  R0              186                131
  R1                4                  3
  R2                2                  2
  RX                8                 10

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    44  21
  17Q LOSS WILD-TYPE 191 101
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                65                292 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                21                101 
$`17Q LOSS MUTATED`
TCGA-18-3414 TCGA-21-1070 TCGA-21-5786 TCGA-21-A5DI TCGA-22-1011 TCGA-22-1016 
       13.02       119.54        21.73        32.19         1.74        27.02 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4605 TCGA-22-5472 TCGA-22-5478 TCGA-22-5492 
       24.13         0.56        32.02        64.90         0.79        16.60 
TCGA-33-4583 TCGA-33-4587 TCGA-34-2600 TCGA-34-5241 TCGA-37-4141 TCGA-39-5029 
      141.34        54.44        61.61        14.07         0.39        24.33 
TCGA-39-5035 TCGA-39-5040 TCGA-43-2581 TCGA-43-3394 TCGA-43-7656 TCGA-51-4080 
       15.58        17.06        13.12        27.02         6.97         0.39 
TCGA-52-7622 TCGA-52-7810 TCGA-56-5897 TCGA-56-7580 TCGA-56-7822 TCGA-56-8503 
       17.79        30.31         0.10         1.32         0.03         1.35 
TCGA-56-8624 TCGA-56-8628 TCGA-56-A4ZJ TCGA-58-8393 TCGA-60-2695 TCGA-60-2696 
        1.18         0.53         1.02         0.66        21.07         3.58 
TCGA-60-2706 TCGA-60-2708 TCGA-60-2711 TCGA-60-2714 TCGA-60-2719 TCGA-60-2720 
       92.71        80.42        41.39        50.33        42.61         3.16 
TCGA-60-2722 TCGA-66-2769 TCGA-66-2771 TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 
       29.85         7.07        19.00        12.03        12.00        25.97 
TCGA-66-2795 TCGA-77-7139 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-A5GB 
        4.01        89.95        86.76        53.95        82.92        30.81 
TCGA-77-A5GH TCGA-85-7696 TCGA-85-7697 TCGA-85-7950 TCGA-85-8479 TCGA-85-A53L 
       23.44         0.59         0.33         1.97         0.72         0.43 
TCGA-92-8063 TCGA-92-8065 TCGA-94-7557 TCGA-98-8021 TCGA-L3-A4E7 
        4.01         2.27         0.16        13.58         1.15 

$`17Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3415 TCGA-18-3416 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        59.51        28.34        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 
        6.15         2.79        90.51         3.02        27.16        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 
       99.16        70.13        60.89        34.78        15.55        31.69 
TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 
      122.43         9.30       119.80         8.78        31.63        88.08 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       29.85        10.82        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4594 
       64.21        14.10        48.82        20.45        35.08        48.33 
TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        34.75        13.12        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 
       31.73        63.52        14.60        44.22        54.28        71.34 
TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 
       79.20        11.74        18.84        30.08        62.86        56.32 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 
       14.07        10.98        19.76        26.99         2.63        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 
        9.04        10.82         7.73        22.95         5.52         4.96 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        1.08         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        7.46         7.82         6.81         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        36.39        35.64        35.70        17.88 
TCGA-43-2576 TCGA-43-2578 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 
       24.59        22.49        11.74        11.47        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 
       12.46        10.19         5.42         3.78         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 
        6.64         6.35         2.93         9.96        10.65        13.87 
TCGA-51-4079 TCGA-51-4081 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
        0.39        29.95         5.42         8.75        27.45        28.93 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 
        0.85         0.20         5.82         1.78         2.07         0.56 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         0.99         1.51         0.99         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43         8.94        44.09        16.47 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       34.36        36.59        17.72        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2707 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 
       37.94        21.70        49.48        66.51         9.01        56.91 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       35.34        48.49        32.28        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 
       11.77        16.96        43.10         2.01        21.07         0.99 
TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 
        1.02         2.01         0.92         0.99         0.99        20.98 
TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       25.02         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2770 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 
       23.01         3.02         2.01        19.00         3.98        24.95 
TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 
        1.94        40.01        22.98         4.04        22.98         5.03 
TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 
       30.02        10.06        54.08        49.05         2.73         6.64 
TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
        6.94         8.02         3.12        29.56        73.08        75.09 
TCGA-77-6845 TCGA-77-7138 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       23.28        11.18        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8139 
      106.95         0.16        46.78        15.75         6.51       104.09 
TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-85-6560 
       27.39         9.63        55.33        35.90         0.33         0.36 
TCGA-85-6561 TCGA-85-6798 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        0.79         1.12         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.43         0.36         1.45         1.78         1.97         1.81 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8580 
        2.20         1.78         2.01         0.66         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M 
        0.13         0.10         0.46         0.46         0.82         0.62 
TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.79        24.89         1.55         2.93         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-94-7033 
        8.02        10.88         2.70         3.48         5.26         2.86 
TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        4.70        39.88        44.15         6.18         6.90         8.42 
TCGA-98-8020 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A524 TCGA-LA-A446 
        2.73         7.33        10.13         7.30        14.76         1.18 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        3.02        56.61        50.86        37.32 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.03               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            141.34             173.79 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             14.07              10.93 
[1] "0.0 - 141.3 (14.1)" "0.0 - 173.8 (10.9)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
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"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D71V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  17Q LOSS MUTATED         1       15       26        0         5        13
  17Q LOSS WILD-TYPE       0       52      105        1        40        52
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  17Q LOSS MUTATED            8          3        1
  17Q LOSS WILD-TYPE         45         17        4
D71V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED    21  37  10   4
  17Q LOSS WILD-TYPE  71 202  32  14
D71V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1               21                 71
  T2               37                202
  T3               10                 32
  T4                4                 14
                    vv
clus                  N0  N1  N2  N3
  17Q LOSS MUTATED    51  14   5   0
  17Q LOSS WILD-TYPE 194  89  28   5
D71V5, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0               51                194
  N1               14                 89
  N2                5                 28
  N3                0                  5
                    vv
clus                  M0  M1  MX
  17Q LOSS MUTATED    62   1   7
  17Q LOSS WILD-TYPE 271   4  40
D71V6, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  M0               62                271
  M1                1                  4
  MX                7                 40
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    24  48
  17Q LOSS WILD-TYPE  74 245
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     24   48
  17Q LOSS WILD-TYPE   74  245
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE               24                 74
  MALE                 48                245
D71V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                       2
  17Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  17Q LOSS MUTATED                                        1
  17Q LOSS WILD-TYPE                                      4
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  17Q LOSS MUTATED                                         1
  17Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q LOSS MUTATED                                                            68
  17Q LOSS WILD-TYPE                                                         305
D71V9, multiclass
                                                             clus
vv                                                            17Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               68
                                                             clus
vv                                                            17Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                305
D71V10, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     5  67
  17Q LOSS WILD-TYPE   7 312
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      5   67
  17Q LOSS WILD-TYPE    7  312
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 5                  7
  YES               67                312
D71V11, continuous
D71V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q LOSS MUTATED    61   1   0   4
  17Q LOSS WILD-TYPE 256   6   4  14
D71V13, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  R0               61                256
  R1                1                  6
  R2                0                  4
  RX                4                 14

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    67  32
  18P LOSS WILD-TYPE 168  90
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                99                258 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                32                 90 
$`18P LOSS MUTATED`
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 TCGA-21-1071 
       13.02        59.51        24.92        43.76       119.54        46.88 
TCGA-21-1080 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 
      122.43        10.82        32.19        14.93         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 TCGA-22-4601 TCGA-22-5478 
       27.02        48.82        35.08        48.33        34.75         0.79 
TCGA-22-5482 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4582 TCGA-33-4583 
       11.74       114.05        97.94        43.10       103.53       141.34 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-2609 TCGA-34-5241 
       10.98        19.76        26.99        32.84        31.23        14.07 
TCGA-34-7107 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-39-5011 TCGA-39-5028 
        1.08         8.09         7.46         7.82        47.80         1.71 
TCGA-39-5036 TCGA-43-3394 TCGA-43-6647 TCGA-43-7656 TCGA-43-8115 TCGA-46-3768 
       35.64        27.02        12.46         6.97         6.64         9.96 
TCGA-46-6025 TCGA-51-4079 TCGA-52-7810 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 
       10.65         0.39        30.31        28.93         0.10         2.04 
TCGA-56-7221 TCGA-56-7222 TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 TCGA-56-8629 
        0.99         0.43         1.35         1.18         0.56         1.12 
TCGA-56-A4ZK TCGA-58-A46K TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2720 
        0.13        34.36        92.71        21.70        80.42         3.16 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2766 TCGA-66-2773 TCGA-66-2780 
        0.99         1.02         0.92         1.02         3.02        12.03 
TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 
        3.98         1.94        25.97         5.03        30.02         4.01 
TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 TCGA-77-8007 TCGA-77-8139 TCGA-77-8144 
        6.94         8.02        29.56         6.51       104.09        27.39 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7950 TCGA-85-8287 TCGA-85-8355 
       23.44         0.36         0.33         1.97         1.45         0.66 
TCGA-85-8481 TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-A4ED 
        0.66         0.82         0.43         1.55         2.93         8.02 
TCGA-92-7341 TCGA-94-7557 TCGA-94-7943 TCGA-96-8170 TCGA-98-8020 TCGA-98-8023 
        3.48         0.16         4.70         6.90         2.73        10.13 
TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG 
        3.02        56.61        50.86 

$`18P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3416 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 
       11.34        28.34         1.61         6.15         2.79        90.51 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
        3.02        27.16        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 
       15.55        31.69         9.30       119.80         8.78        31.63 
TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-22-0940 TCGA-22-0944 TCGA-22-1002 
       88.08        29.85        21.73        19.99         7.33         4.31 
TCGA-22-1005 TCGA-22-4591 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4604 
       64.21        20.45        24.13         0.56        38.17        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60        44.22        54.28        71.34        79.20 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4566 TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
      173.79        14.07        54.44         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 
       28.96        50.24        51.78        32.68         9.04        10.82 
TCGA-34-5240 TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 
        7.73        22.95         5.52         4.96         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 
        0.39         6.54         6.81         0.39         3.39        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5029 
       44.71        68.58        55.17        70.03        60.76        24.33 
TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 
        1.94        27.35        36.39        15.58        35.70        17.88 
TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 TCGA-43-5668 
       17.06        24.59        22.49        13.12        11.74        11.47 
TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 TCGA-43-6773 TCGA-43-7657 
       18.05        12.36        10.19         5.42         3.78         1.58 
TCGA-43-7658 TCGA-43-8116 TCGA-43-8118 TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 
       66.51         6.35         2.93        13.87         0.39        29.95 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-6546 TCGA-56-7223 
       17.79         5.42         8.75        27.45         1.02         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8504 
        1.45         1.32         0.85         0.20         0.03         5.82 
TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY 
        1.78         2.07         0.53         0.99         1.51         0.99 
TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.02         0.26         0.03        13.25        12.43         8.94 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       44.09        16.47         0.66        36.59        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 
        3.58        12.23        10.22        96.82        37.94        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 
       66.51        41.39         9.01        56.91        50.33        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 
       48.49        42.61        32.28        29.85        35.90        23.57 
TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 
       26.79        11.77        16.96        43.10         2.01        21.07 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2777 TCGA-66-2778 TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 
        2.01        19.00        12.00        24.95        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 
        4.04        22.98        10.06        54.08        49.05         2.73 
TCGA-68-7756 TCGA-68-8251 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 
        6.64         3.12        73.08        75.09        23.28        11.18 
TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 
       89.95        20.78         0.49        42.25        70.09       106.95 
TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
        0.16        46.78        15.75        86.76        53.95        82.92 
TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 
        9.63        55.33        35.90         0.33        30.81         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 
        1.12         0.59         1.61         0.03         1.15         1.25 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8072 
        0.85         1.97         0.53         1.41         0.46         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.43         0.36         1.78         1.97         1.81         2.20 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        1.78         2.01         0.72         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7769 
        0.46         0.46         0.62         0.79        24.89         0.59 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8063 TCGA-92-8064 TCGA-92-8065 
        3.29        10.88         2.70         4.01         5.26         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-98-7454 TCGA-98-8021 
        2.86        39.88        44.15         6.18         8.42        13.58 
TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HI 
        7.33         7.30         1.15        14.76         1.18        37.32 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.10               0.03 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            141.34             173.79 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             9.960             12.295 
[1] "0.1 - 141.3 (10.0)" "0.0 - 173.8 (12.3)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D72V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18P LOSS MUTATED         1       15       38        1         8        20
  18P LOSS WILD-TYPE       0       52       93        0        37        45
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18P LOSS MUTATED           15          3        3
  18P LOSS WILD-TYPE         38         17        2
D72V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS MUTATED    19  71  11   5
  18P LOSS WILD-TYPE  73 168  31  13
D72V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1               19                 73
  T2               71                168
  T3               11                 31
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  18P LOSS MUTATED    69  25   9   1
  18P LOSS WILD-TYPE 176  78  24   4
D72V5, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0               69                176
  N1               25                 78
  N2                9                 24
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18P LOSS MUTATED    84   3  16
  18P LOSS WILD-TYPE 249   2  31
D72V6, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  M0               84                249
  M1                3                  2
  MX               16                 31
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    24  82
  18P LOSS WILD-TYPE  74 211
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     24   82
  18P LOSS WILD-TYPE   74  211
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               24                 74
  MALE                 82                211
D72V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                       2
  18P LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18P LOSS MUTATED                                        2
  18P LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18P LOSS MUTATED                                         0
  18P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P LOSS MUTATED                                                           102
  18P LOSS WILD-TYPE                                                         271
D72V9, multiclass
                                                             clus
vv                                                            18P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              102
                                                             clus
vv                                                            18P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                271
D72V10, binary
                    cls
clus                   0   1
  18P LOSS MUTATED     1 105
  18P LOSS WILD-TYPE  11 274
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      1  105
  18P LOSS WILD-TYPE   11  274
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 1                 11
  YES              105                274
D72V11, continuous
D72V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P LOSS MUTATED    83   2   0   4
  18P LOSS WILD-TYPE 234   5   4  14
D72V13, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  R0               83                234
  R1                2                  5
  R2                0                  4
  RX                4                 14

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED    91  37
  18Q LOSS WILD-TYPE 144  85
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               128                229 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                37                 85 
$`18Q LOSS MUTATED`
TCGA-18-3412 TCGA-18-3414 TCGA-18-3416 TCGA-18-3417 TCGA-18-3421 TCGA-21-1070 
       11.34        13.02        28.34        24.92        43.76       119.54 
TCGA-21-1071 TCGA-21-1079 TCGA-21-1080 TCGA-21-5782 TCGA-21-5786 TCGA-21-5787 
       46.88        31.69       122.43        31.63        21.73        10.82 
TCGA-21-A5DI TCGA-22-1000 TCGA-22-1011 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 
       32.19        14.93         1.74        27.02        48.82        35.08 
TCGA-22-4599 TCGA-22-4601 TCGA-22-5473 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 
       38.17        34.75        63.52       114.05        97.94        43.10 
TCGA-33-4583 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2608 TCGA-34-5231 
      141.34        10.98        19.76        26.99        32.84        50.24 
TCGA-34-5241 TCGA-37-3789 TCGA-37-3792 TCGA-37-4130 TCGA-37-4133 TCGA-39-5011 
       14.07         0.43         0.39         8.09         7.82        47.80 
TCGA-39-5027 TCGA-39-5028 TCGA-39-5036 TCGA-43-2576 TCGA-43-3394 TCGA-43-5668 
       60.76         1.71        35.64        24.59        27.02        11.47 
TCGA-43-6647 TCGA-43-7656 TCGA-46-3768 TCGA-46-6025 TCGA-51-4079 TCGA-52-7810 
       12.46         6.97         9.96        10.65         0.39        30.31 
TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-7221 TCGA-56-7222 
       27.45        28.93         0.10         2.04         0.99         0.43 
TCGA-56-7223 TCGA-56-8503 TCGA-56-8624 TCGA-56-8626 TCGA-56-8629 TCGA-56-A4BY 
        0.99         1.35         1.18         0.56         1.12         0.99 
TCGA-56-A4ZK TCGA-58-8386 TCGA-58-A46K TCGA-60-2696 TCGA-60-2698 TCGA-60-2706 
        0.13         0.03        34.36         3.58        10.22        92.71 
TCGA-60-2707 TCGA-60-2708 TCGA-60-2714 TCGA-60-2720 TCGA-60-2726 TCGA-66-2734 
       21.70        80.42        50.33         3.16        11.77        43.10 
TCGA-66-2744 TCGA-66-2753 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2768 
        0.99         1.02         0.99         2.01         1.02         2.01 
TCGA-66-2773 TCGA-66-2780 TCGA-66-2781 TCGA-66-2785 TCGA-66-2786 TCGA-66-2790 
        3.02        12.03         3.98         1.94        25.97        22.98 
TCGA-66-2791 TCGA-66-2792 TCGA-66-2795 TCGA-68-7757 TCGA-68-8250 TCGA-77-6842 
        5.03        30.02         4.01         6.94         8.02        29.56 
TCGA-77-7337 TCGA-77-8007 TCGA-77-8130 TCGA-77-8139 TCGA-77-8144 TCGA-77-8148 
      106.95         6.51        82.92       104.09        27.39         9.63 
TCGA-77-A5GH TCGA-85-6560 TCGA-85-7697 TCGA-85-7698 TCGA-85-7844 TCGA-85-7950 
       23.44         0.36         0.33         1.61         1.25         1.97 
TCGA-85-8049 TCGA-85-8072 TCGA-85-8287 TCGA-85-8352 TCGA-85-8353 TCGA-85-8355 
        1.97         1.18         1.45         2.20         1.78         0.66 
TCGA-85-8481 TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.66         0.82         0.43         1.55         2.93         0.59 
TCGA-90-A4ED TCGA-92-7341 TCGA-92-8063 TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 
        8.02         3.48         4.01         2.86         0.16         4.70 
TCGA-96-8169 TCGA-96-8170 TCGA-98-8020 TCGA-98-8023 TCGA-L3-A524 TCGA-NC-A5HE 
        6.18         6.90         2.73        10.13        14.76        56.61 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

$`18Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3415 TCGA-18-3419 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-18-5592 
       59.51         1.61         6.15         2.79        90.51         3.02 
TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 
       27.16        99.16        70.13        60.89        34.78        15.55 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5783 TCGA-21-5784 TCGA-22-0940 
        9.30       119.80         8.78        88.08        29.85        19.99 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1005 TCGA-22-1012 TCGA-22-4591 TCGA-22-4594 
        7.33         4.31        64.21        14.10        20.45        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 
       24.13         0.56        13.12        32.02        19.30         9.53 
TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 
       11.77        31.73        64.90        14.60        44.22         0.79 
TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 
       54.28        71.34        79.20        11.74        18.84        30.08 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4566 TCGA-33-4582 
       62.86        56.32        16.60         7.63       173.79       103.53 
TCGA-33-4586 TCGA-33-4587 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 
       14.07        54.44         2.63        61.61        31.50        28.96 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       31.23        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5927 TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-4129 
       22.95         5.52         4.96         1.08         3.95         6.54 
TCGA-37-4132 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        7.46         6.81         0.39         3.39        74.07        44.71 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 
       68.58        55.17        70.03        24.33         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2578 
       36.39        15.58        35.70        17.88        17.06        22.49 
TCGA-43-2581 TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6770 TCGA-43-6771 
       13.12        11.74        18.05        12.36        10.19         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 
        3.78         1.58        66.51         6.64         6.35         2.93 
TCGA-46-6026 TCGA-51-4080 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 
       13.87         0.39        29.95        17.79         5.42         8.75 
TCGA-56-6546 TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 
        1.02         1.45         1.32         0.85         0.20         0.03 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BX 
        5.82         1.78         2.07         0.53         0.99         1.51 
TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        1.02         0.26        13.25        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 
       16.47         0.66        36.59        17.72        21.07        12.23 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 
       96.82        37.94        49.48        66.51        41.39         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2721 TCGA-60-2722 
       56.91        35.34        48.49        42.61        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2727 TCGA-66-2737 TCGA-66-2742 
       35.90        23.57        26.79        16.96         2.01        21.07 
TCGA-66-2754 TCGA-66-2755 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 
        2.01         0.92         0.99         0.99        20.98        25.02 
TCGA-66-2767 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 
        2.01         7.07        23.01        19.00         2.01        19.00 
TCGA-66-2782 TCGA-66-2783 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 TCGA-66-2793 
       12.00        24.95        40.01        22.98         4.04        10.06 
TCGA-66-2794 TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8251 TCGA-77-6843 
       54.08        49.05         2.73         6.64         3.12        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       75.09        23.28        11.18        89.95        20.78         0.49 
TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8008 
       42.25        70.09         0.16        46.78        15.75        86.76 
TCGA-77-8009 TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-85-6561 
       53.95        55.33        35.90         0.33        30.81         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7699 TCGA-85-7843 TCGA-85-8048 TCGA-85-8052 
        1.12         0.59         0.03         1.15         0.85         0.53 
TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 
        1.41         0.46         0.43         0.36         1.78         1.97 
TCGA-85-8351 TCGA-85-8354 TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        1.81         2.01         0.72         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7964 
        0.46         0.46         0.62         0.79        24.89         3.29 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-92-8065 TCGA-96-7544 TCGA-96-7545 
       10.88         2.70         5.26         2.27        39.88        44.15 
TCGA-98-7454 TCGA-98-8021 TCGA-98-8022 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 
        8.42        13.58         7.33         7.30         1.15         1.18 
TCGA-MF-A522 
        3.02 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.03               0.03 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            141.34             173.79 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            10.045             13.120 
[1] "0.0 - 141.3 (10.0)" "0.0 - 173.8 (13.1)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
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        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
[1] "hr=" "1.2"
D73V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  18Q LOSS MUTATED         1       18       49        0        14        30
  18Q LOSS WILD-TYPE       0       49       82        1        31        35
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  18Q LOSS MUTATED           21          3        3
  18Q LOSS WILD-TYPE         32         17        2
D73V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q LOSS MUTATED    25  92  19   5
  18Q LOSS WILD-TYPE  67 147  23  13
D73V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               25                 67
  T2               92                147
  T3               19                 23
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  18Q LOSS MUTATED    86  40  11   1
  18Q LOSS WILD-TYPE 159  63  22   4
D73V5, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0               86                159
  N1               40                 63
  N2               11                 22
  N3                1                  4
                    vv
clus                  M0  M1  MX
  18Q LOSS MUTATED   114   3  20
  18Q LOSS WILD-TYPE 219   2  27
D73V6, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  M0              114                219
  M1                3                  2
  MX               20                 27
D73V7, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED    31 110
  18Q LOSS WILD-TYPE  67 183
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED     31  110
  18Q LOSS WILD-TYPE   67  183
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE               31                 67
  MALE                110                183
D73V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                       2
  18Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  18Q LOSS MUTATED                                        3
  18Q LOSS WILD-TYPE                                      2
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  18Q LOSS MUTATED                                         0
  18Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q LOSS MUTATED                                                           136
  18Q LOSS WILD-TYPE                                                         237
D73V9, multiclass
                                                             clus
vv                                                            18Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              136
                                                             clus
vv                                                            18Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                237
D73V10, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED     3 138
  18Q LOSS WILD-TYPE   9 241
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      3  138
  18Q LOSS WILD-TYPE    9  241
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 3                  9
  YES              138                241
D73V11, continuous
D73V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q LOSS MUTATED   112   2   0   9
  18Q LOSS WILD-TYPE 205   5   4   9
D73V13, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  R0              112                205
  R1                2                  5
  R2                0                  4
  RX                9                  9

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED    73  37
  19P LOSS WILD-TYPE 162  85
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               110                247 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                37                 85 
$`19P LOSS MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-18-3417 TCGA-18-5592 TCGA-21-1070 TCGA-21-1071 
       79.46        11.34        24.92         3.02       119.54        46.88 
TCGA-21-1083 TCGA-21-5783 TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1002 
        8.78        88.08        21.73        32.19        19.99         4.31 
TCGA-22-1005 TCGA-22-4594 TCGA-22-4601 TCGA-22-5478 TCGA-22-5485 TCGA-22-5492 
       64.21        48.33        34.75         0.79        30.08        16.60 
TCGA-33-4532 TCGA-33-4582 TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2604 
        7.63       103.53        54.44        19.76        26.99        31.50 
TCGA-34-2608 TCGA-34-5241 TCGA-34-5928 TCGA-34-5929 TCGA-37-3792 TCGA-37-4129 
       32.84        14.07         5.52         4.96         0.39         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 
        8.09         7.46         7.82         6.81         0.39         3.39 
TCGA-39-5011 TCGA-39-5029 TCGA-39-5036 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 
       47.80        24.33        35.64        17.06        24.59        22.49 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-6771 TCGA-43-7656 TCGA-46-6025 
       27.02        11.74        11.47         5.42         6.97        10.65 
TCGA-46-6026 TCGA-51-4081 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 
       13.87        29.95        30.31         8.75        28.93         0.10 
TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7730 TCGA-56-7822 
        0.99         0.43         0.99         1.45         0.20         0.03 
TCGA-56-8624 TCGA-56-8629 TCGA-56-A4BX TCGA-56-A4ZJ TCGA-58-8386 TCGA-58-8388 
        1.18         1.12         1.51         1.02         0.03        12.43 
TCGA-58-8390 TCGA-58-A46L TCGA-60-2696 TCGA-60-2707 TCGA-60-2711 TCGA-60-2714 
        8.94        36.59         3.58        21.70        41.39        50.33 
TCGA-60-2722 TCGA-66-2727 TCGA-66-2753 TCGA-66-2756 TCGA-66-2759 TCGA-66-2769 
       29.85        16.96         1.02         0.99        25.02         7.07 
TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 TCGA-66-2788 TCGA-66-2793 TCGA-68-7755 
       12.03        12.00        25.97        22.98        10.06         2.73 
TCGA-68-7756 TCGA-68-8250 TCGA-77-6845 TCGA-77-7138 TCGA-77-7338 TCGA-77-7463 
        6.64         8.02        23.28        11.18         0.16        46.78 
TCGA-77-8144 TCGA-77-8156 TCGA-85-6560 TCGA-85-7697 TCGA-85-8070 TCGA-85-8072 
       27.39         0.33         0.36         0.33         1.41         1.18 
TCGA-85-8287 TCGA-85-8351 TCGA-85-A4CL TCGA-85-A53L TCGA-90-7964 TCGA-90-A4ED 
        1.45         1.81         0.46         0.43         3.29         8.02 
TCGA-92-7341 TCGA-92-8063 TCGA-94-7557 TCGA-94-7943 TCGA-96-8169 TCGA-L3-A524 
        3.48         4.01         0.16         4.70         6.18        14.76 
TCGA-NC-A5HG TCGA-NC-A5HI 
       50.86        37.32 

$`19P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        28.34         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       90.51        27.16        99.16        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 
       15.55        31.69       122.43         9.30       119.80        31.63 
TCGA-21-5784 TCGA-21-5787 TCGA-22-0944 TCGA-22-1000 TCGA-22-1011 TCGA-22-1012 
       29.85        10.82         7.33        14.93         1.74        14.10 
TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 
       27.02        48.82        20.45        35.08        24.13         0.56 
TCGA-22-4599 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 
       38.17        13.12        32.02        19.30         9.53        11.77 
TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 
       31.73        64.90        63.52        14.60        44.22        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5491 
       71.34        79.20        11.74        18.84        62.86        56.32 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 
      114.05        97.94        43.10       173.79       141.34        14.07 
TCGA-33-4589 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 TCGA-34-2609 TCGA-34-5231 
       10.98         2.63        61.61        28.96        31.23        50.24 
TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5927 
       51.78        32.68         9.04        10.82         7.73        22.95 
TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 
        1.08         3.95         0.43        74.07        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76         1.71         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 TCGA-39-5039 TCGA-43-2581 TCGA-43-5670 
       36.39        15.58        35.70        17.88        13.12        18.05 
TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 
       12.36        12.46        10.19         3.78         1.58        66.51 
TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-51-4079 TCGA-51-4080 
        6.64         6.35         2.93         9.96         0.39         0.39 
TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-6545 TCGA-56-6546 TCGA-56-7580 
       17.79         5.42        27.45         2.04         1.02         1.32 
TCGA-56-7582 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 TCGA-56-8625 TCGA-56-8626 
        0.85         1.35         5.82         1.78         2.07         0.56 
TCGA-56-8628 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8387 
        0.53         0.99         0.99         0.13         0.26        13.25 
TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 
       44.09        16.47         0.66        34.36        17.72        21.07 
TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 
       12.23        10.22        96.82        37.94        92.71        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 
       49.48        66.51         9.01        56.91        35.34        48.49 
TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 
       42.61         3.16        32.28        35.90        23.57        26.79 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 
       11.77        43.10         2.01        21.07         0.99         2.01 
TCGA-66-2755 TCGA-66-2757 TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 
        0.92         0.99        20.98         0.99         2.01         1.02 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 
        2.01         2.01        23.01        19.00         3.02         2.01 
TCGA-66-2778 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2789 
       19.00         3.98        24.95         1.94        40.01         4.04 
TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98         5.03        30.02        54.08         4.01        49.05 
TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-7139 
        6.94         3.12        29.56        73.08        75.09        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7337 TCGA-77-7465 
       20.78         0.49        42.25        70.09       106.95        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 
        6.51        86.76        53.95        82.92       104.09         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 TCGA-85-6798 
       55.33        35.90        30.81        23.44         0.79         1.12 
TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 
        0.85         1.97         0.53         0.46         0.43         0.36 
TCGA-85-8288 TCGA-85-8350 TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.78         1.97         2.20         1.78         2.01         0.66 
TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 
        0.72         0.66         0.89         0.13         0.10         0.46 
TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 
        0.82         0.62         0.79        24.89         1.55         2.93 
TCGA-90-7769 TCGA-90-A4EE TCGA-92-7340 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        0.59        10.88         2.70         5.26         2.27         2.86 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 
       39.88        44.15         6.90         8.42         2.73        13.58 
TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 
        7.33        10.13         7.30         1.15         1.18         3.02 
TCGA-NC-A5HE 
       56.61 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.03               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            119.54             173.79 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              9.50              12.46 
[1] "0.0 - 119.5 (9.5)"  "0.0 - 173.8 (12.5)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
[1] "hr=" "1.3"
D74V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19P LOSS MUTATED         1       21       39        0        14        16
  19P LOSS WILD-TYPE       0       46       92        1        31        49
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19P LOSS MUTATED           19          6        3
  19P LOSS WILD-TYPE         34         14        2
D74V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS MUTATED    31  70  13   8
  19P LOSS WILD-TYPE  61 169  29  10
D74V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               31                 61
  T2               70                169
  T3               13                 29
  T4                8                 10
                    vv
clus                  N0  N1  N2  N3
  19P LOSS MUTATED    85  22  13   0
  19P LOSS WILD-TYPE 160  81  20   5
D74V5, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0               85                160
  N1               22                 81
  N2               13                 20
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19P LOSS MUTATED   100   3  17
  19P LOSS WILD-TYPE 233   2  30
D74V6, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  M0              100                233
  M1                3                  2
  MX               17                 30
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED    28  94
  19P LOSS WILD-TYPE  70 199
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED     28   94
  19P LOSS WILD-TYPE   70  199
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE               28                 70
  MALE                 94                199
D74V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                       4
  19P LOSS WILD-TYPE                                     8
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19P LOSS MUTATED                                        2
  19P LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19P LOSS MUTATED                                         1
  19P LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P LOSS MUTATED                                                           115
  19P LOSS WILD-TYPE                                                         258
D74V9, multiclass
                                                             clus
vv                                                            19P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      4
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              115
                                                             clus
vv                                                            19P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        8
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                258
D74V10, binary
                    cls
clus                   0   1
  19P LOSS MUTATED     6 116
  19P LOSS WILD-TYPE   6 263
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      6  116
  19P LOSS WILD-TYPE    6  263
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 6                  6
  YES              116                263
D74V11, continuous
D74V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P LOSS MUTATED    94   4   1   5
  19P LOSS WILD-TYPE 223   3   3  13
D74V13, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  R0               94                223
  R1                4                  3
  R2                1                  3
  RX                5                 13

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    54  19
  19Q LOSS WILD-TYPE 181 103
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                73                284 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                19                103 
$`19Q LOSS MUTATED`
TCGA-18-3409 TCGA-18-3412 TCGA-18-3416 TCGA-18-5592 TCGA-21-A5DI TCGA-22-0940 
       79.46        11.34        28.34         3.02        32.19        19.99 
TCGA-22-0944 TCGA-22-1005 TCGA-22-4594 TCGA-22-4613 TCGA-33-4532 TCGA-33-4587 
        7.33        64.21        48.33        11.77         7.63        54.44 
TCGA-34-5929 TCGA-37-4129 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5036 
        4.96         6.54         7.82         6.81         0.39        35.64 
TCGA-43-3394 TCGA-43-6771 TCGA-43-7656 TCGA-46-6025 TCGA-46-6026 TCGA-51-4081 
       27.02         5.42         6.97        10.65        13.87        29.95 
TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 TCGA-56-5897 TCGA-56-7221 TCGA-56-7222 
       30.31         8.75        28.93         0.10         0.99         0.43 
TCGA-56-7579 TCGA-56-7822 TCGA-56-A4BX TCGA-58-8386 TCGA-58-A46L TCGA-60-2696 
        1.45         0.03         1.51         0.03        36.59         3.58 
TCGA-60-2707 TCGA-60-2711 TCGA-60-2714 TCGA-66-2727 TCGA-66-2753 TCGA-66-2756 
       21.70        41.39        50.33        16.96         1.02         0.99 
TCGA-66-2759 TCGA-66-2782 TCGA-66-2786 TCGA-66-2794 TCGA-68-7755 TCGA-68-7756 
       25.02        12.00        25.97        54.08         2.73         6.64 
TCGA-68-8250 TCGA-77-6845 TCGA-77-7338 TCGA-77-7463 TCGA-77-8144 TCGA-77-8156 
        8.02        23.28         0.16        46.78        27.39         0.33 
TCGA-85-6560 TCGA-85-6561 TCGA-85-7697 TCGA-85-7843 TCGA-85-7950 TCGA-85-8070 
        0.36         0.79         0.33         1.15         1.97         1.41 
TCGA-85-8071 TCGA-85-8072 TCGA-85-8287 TCGA-85-8351 TCGA-85-A4CL TCGA-90-A4ED 
        0.46         1.18         1.45         1.81         0.46         8.02 
TCGA-92-8063 TCGA-94-7557 TCGA-94-7943 TCGA-L3-A524 TCGA-MF-A522 TCGA-NC-A5HG 
        4.01         0.16         4.70        14.76         3.02        50.86 
TCGA-NC-A5HI 
       37.32 

$`19Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3410 TCGA-18-3411 TCGA-18-3414 
       12.16         4.47        81.07         4.80        46.52        13.02 
TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       59.51        24.92         1.61        43.76         6.15         2.79 
TCGA-18-4721 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
       90.51        27.16       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 
       60.89        34.78        15.55        31.69       122.43         9.30 
TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 
      119.80         8.78        31.63        88.08        29.85        21.73 
TCGA-21-5787 TCGA-22-1000 TCGA-22-1002 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 
       10.82        14.93         4.31         1.74        14.10        27.02 
TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 
       48.82        20.45        35.08        24.13         0.56        38.17 
TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5471 
       34.75        13.12        32.02        19.30         9.53        31.73 
TCGA-22-5472 TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 
       64.90        63.52        14.60        44.22         0.79        54.28 
TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 
       71.34        79.20        11.74        18.84        30.08        62.86 
TCGA-22-5491 TCGA-22-5492 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 
       56.32        16.60       114.05        97.94        43.10       173.79 
TCGA-33-4582 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 
      103.53       141.34        14.07        10.98        19.76        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4130 TCGA-37-4132 TCGA-37-5819 TCGA-39-5011 TCGA-39-5016 
        0.39         8.09         7.46         3.39        47.80        74.07 
TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       44.71        68.58        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5037 
       24.33         1.94        27.35        36.39        15.58        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
       17.88        17.06        24.59        22.49        13.12        11.74 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 
       11.47        18.05        12.36        12.46        10.19         3.78 
TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 
        1.58        66.51         6.64         6.35         2.93         9.96 
TCGA-51-4079 TCGA-51-4080 TCGA-52-7622 TCGA-52-7809 TCGA-52-7812 TCGA-56-6545 
        0.39         0.39        17.79         5.42        27.45         2.04 
TCGA-56-6546 TCGA-56-7223 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-8503 
        1.02         0.99         1.32         0.85         0.20         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        1.12         0.99         0.99         1.02         0.13         0.26 
TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-58-8393 
       13.25        12.43         8.94        44.09        16.47         0.66 
TCGA-58-A46K TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 
       34.36        17.72        21.07        12.23        10.22        96.82 
TCGA-60-2704 TCGA-60-2706 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2712 
       37.94        92.71        80.42        49.48        66.51         9.01 
TCGA-60-2713 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 
       56.91        35.34        48.49        42.61         3.16        32.28 
TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 
       29.85        35.90        23.57        26.79        11.77        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2754 TCGA-66-2755 TCGA-66-2757 
        2.01        21.07         0.99         2.01         0.92         0.99 
TCGA-66-2758 TCGA-66-2763 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98         0.99         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 
        7.07        23.01        19.00         3.02         2.01        19.00 
TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 
       12.03         3.98        24.95         1.94        40.01        22.98 
TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 
        4.04        22.98         5.03        30.02        10.06         4.01 
TCGA-66-2800 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 
       49.05         6.94         3.12        29.56        73.08        75.09 
TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 
       11.18        89.95        20.78         0.49        42.25        70.09 
TCGA-77-7337 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 
      106.95        15.75         6.51        86.76        53.95        82.92 
TCGA-77-8139 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH 
      104.09         9.63        55.33        35.90        30.81        23.44 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7844 TCGA-85-8048 
        1.12         0.59         1.61         0.03         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8276 TCGA-85-8277 TCGA-85-8288 TCGA-85-8350 
        1.97         0.53         0.43         0.36         1.78         1.97 
TCGA-85-8352 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 
        2.20         1.78         2.01         0.66         0.72         0.66 
TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4QR TCGA-85-A50M 
        0.89         0.13         0.10         0.46         0.82         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 
        0.79         0.43        24.89         1.55         2.93         0.59 
TCGA-90-7964 TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 
        3.29        10.88         2.70         3.48         5.26         2.27 
TCGA-94-7033 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        2.86        39.88        44.15         6.18         6.90         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.73        13.58         7.33        10.13         7.30         1.15 
TCGA-LA-A446 TCGA-NC-A5HE 
        1.18        56.61 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.03               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             79.46             173.79 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              7.33              12.74 
[1] "0.0 - 79.5 (7.3)"   "0.0 - 173.8 (12.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
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  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
[1] "hr=" "1.1"
D75V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  19Q LOSS MUTATED         1       12       25        0        12        13
  19Q LOSS WILD-TYPE       0       55      106        1        33        52
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  19Q LOSS MUTATED            9          5        1
  19Q LOSS WILD-TYPE         44         15        4
D75V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED    19  47  10   5
  19Q LOSS WILD-TYPE  73 192  32  13
D75V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1               19                 73
  T2               47                192
  T3               10                 32
  T4                5                 13
                    vv
clus                  N0  N1  N2  N3
  19Q LOSS MUTATED    54  18   7   0
  19Q LOSS WILD-TYPE 191  85  26   5
D75V5, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0               54                191
  N1               18                 85
  N2                7                 26
  N3                0                  5
                    vv
clus                  M0  M1  MX
  19Q LOSS MUTATED    67   1  11
  19Q LOSS WILD-TYPE 266   4  36
D75V6, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  M0               67                266
  M1                1                  4
  MX               11                 36
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    16  65
  19Q LOSS WILD-TYPE  82 228
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     16   65
  19Q LOSS WILD-TYPE   82  228
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               16                 82
  MALE                 65                228
D75V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                       3
  19Q LOSS WILD-TYPE                                     9
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  19Q LOSS MUTATED                                        2
  19Q LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  19Q LOSS MUTATED                                         1
  19Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q LOSS MUTATED                                                            75
  19Q LOSS WILD-TYPE                                                         298
D75V9, multiclass
                                                             clus
vv                                                            19Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               75
                                                             clus
vv                                                            19Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                298
D75V10, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED     4  77
  19Q LOSS WILD-TYPE   8 302
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4   77
  19Q LOSS WILD-TYPE    8  302
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                  8
  YES               77                302
D75V11, continuous
D75V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q LOSS MUTATED    60   2   1   6
  19Q LOSS WILD-TYPE 257   5   3  12
D75V13, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  R0               60                257
  R1                2                  5
  R2                1                  3
  RX                6                 12

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    23  11
  20P LOSS WILD-TYPE 212 111
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                34                323 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                11                111 
$`20P LOSS MUTATED`
TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-21-5787 TCGA-22-4593 TCGA-22-5478 
       28.34        90.51        15.55        10.82        35.08         0.79 
TCGA-33-4583 TCGA-33-4586 TCGA-37-3792 TCGA-37-4135 TCGA-39-5034 TCGA-43-3394 
      141.34        14.07         0.39         6.81        36.39        27.02 
TCGA-43-6771 TCGA-52-7810 TCGA-60-2706 TCGA-60-2712 TCGA-60-2714 TCGA-66-2755 
        5.42        30.31        92.71         9.01        50.33         0.92 
TCGA-66-2766 TCGA-66-2768 TCGA-66-2790 TCGA-66-2791 TCGA-77-7337 TCGA-77-7463 
        1.02         2.01        22.98         5.03       106.95        46.78 
TCGA-77-8144 TCGA-85-6560 TCGA-85-7950 TCGA-85-8071 TCGA-85-8352 TCGA-85-A4QR 
       27.39         0.36         1.97         0.46         2.20         0.82 
TCGA-92-8065 TCGA-96-7544 TCGA-96-8169 TCGA-NC-A5HG 
        2.27        39.88         6.18        50.86 

$`20P LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 
       12.16         4.47        81.07        79.46         4.80        46.52 
TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 
       11.34        13.02        59.51        24.92         1.61        43.76 
TCGA-18-4083 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 
        6.15         2.79         3.02        27.16       119.54        46.88 
TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 
       99.16        70.13        60.89        34.78        31.69       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
        9.30       119.80         8.78        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       21.73        32.19        19.99         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
       64.21         1.74        14.10        27.02        48.82        20.45 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 
       48.33        24.13         0.56        38.17        34.75        13.12 
TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 
       32.02        19.30         9.53        11.77        31.73        64.90 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 
       63.52        14.60        44.22        54.28        71.34        79.20 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 
       11.74        18.84        30.08        62.86        56.32        16.60 
TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 
        7.63       114.05        97.94        43.10       173.79       103.53 
TCGA-33-4587 TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 
       54.44        10.98        19.76        26.99         2.63        61.61 
TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 
       31.50        28.96        32.84        31.23        50.24        51.78 
TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 
       32.68         9.04        10.82         7.73        14.07        22.95 
TCGA-34-5928 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 TCGA-37-4129 
        5.52         4.96         1.08         3.95         0.43         6.54 
TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        8.09         7.46         7.82         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 
       74.07        44.71        68.58        55.17        70.03        60.76 
TCGA-39-5028 TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 
        1.71        24.33         1.94        27.35        15.58        35.64 
TCGA-39-5037 TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 
       35.70        17.88        17.06        24.59        22.49        13.12 
TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 
       11.74        11.47        18.05        12.36        12.46        10.19 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.93         9.96        10.65        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 
       29.95        17.79         5.42         8.75        27.45        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 
        0.10         2.04         1.02         0.99         0.43         0.99 
TCGA-56-7579 TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 
        1.45         1.32         0.85         0.20         0.03         1.35 
TCGA-56-8504 TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 
        5.82         1.78         1.18         2.07         0.56         0.53 
TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK 
        1.12         0.99         1.51         0.99         1.02         0.13 
TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 
        0.26         0.03        13.25        12.43         8.94        44.09 
TCGA-58-8392 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
       16.47         0.66        34.36        36.59        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2707 
        3.58        12.23        10.22        96.82        37.94        21.70 
TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2713 TCGA-60-2715 
       80.42        49.48        66.51        41.39        56.91        35.34 
TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 
       48.49        42.61         3.16        32.28        29.85        35.90 
TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 
       23.57        26.79        11.77        16.96        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 
       21.07         0.99         1.02         2.01         0.99         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 TCGA-66-2765 TCGA-66-2767 TCGA-66-2769 
       20.98        25.02         0.99         2.01         2.01         7.07 
TCGA-66-2770 TCGA-66-2771 TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 
       23.01        19.00         3.02         2.01        19.00        12.03 
TCGA-66-2781 TCGA-66-2782 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 
        3.98        12.00        24.95         1.94        25.97        40.01 
TCGA-66-2788 TCGA-66-2789 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 
       22.98         4.04        30.02        10.06        54.08         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       49.05         2.73         6.64         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 
       29.56        73.08        75.09        23.28        11.18        89.95 
TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 TCGA-77-7335 TCGA-77-7338 TCGA-77-7465 
       20.78         0.49        42.25        70.09         0.16        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 
        6.51        86.76        53.95        82.92       104.09         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6561 
       55.33        35.90         0.33        30.81        23.44         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7697 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 
        1.12         0.59         0.33         1.61         0.03         1.15 
TCGA-85-7844 TCGA-85-8048 TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 
        1.25         0.85         1.97         0.53         1.41         1.18 
TCGA-85-8276 TCGA-85-8277 TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 
        0.43         0.36         1.45         1.78         1.97         1.81 
TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 
        1.78         2.01         0.66         0.72         0.66         0.89 
TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M TCGA-85-A513 
        0.13         0.10         0.46         0.46         0.62         0.79 
TCGA-85-A53L TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.43        24.89         1.55         2.93         0.59         3.29 
TCGA-90-A4ED TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 
        8.02        10.88         2.70         3.48         4.01         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8170 TCGA-98-7454 
        2.86         0.16         4.70        44.15         6.90         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 
        2.73        13.58         7.33        10.13         7.30         1.15 
TCGA-L3-A524 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HI 
       14.76         1.18         3.02        56.61        37.32 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.36               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            141.34             173.79 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            12.445             11.740 
[1] "0.4 - 141.3 (12.4)" "0.0 - 173.8 (11.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
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        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D76V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20P LOSS MUTATED         0        4       10        0         2        10
  20P LOSS WILD-TYPE       1       63      121        1        43        55
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20P LOSS MUTATED            6          3        0
  20P LOSS WILD-TYPE         47         17        5
D76V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED     4  27   4   0
  20P LOSS WILD-TYPE  88 212  38  18
D76V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1                4                 88
  T2               27                212
  T3                4                 38
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  20P LOSS MUTATED    20  10   4   1
  20P LOSS WILD-TYPE 225  93  29   4
D76V5, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0               20                225
  N1               10                 93
  N2                4                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20P LOSS MUTATED    32   0   3
  20P LOSS WILD-TYPE 301   5  44
D76V6, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  M0               32                301
  M1                0                  5
  MX                3                 44
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     6  29
  20P LOSS WILD-TYPE  92 264
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      6   29
  20P LOSS WILD-TYPE   92  264
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE                6                 92
  MALE                 29                264
D76V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                       1
  20P LOSS WILD-TYPE                                    11
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20P LOSS MUTATED                                        0
  20P LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20P LOSS MUTATED                                         0
  20P LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P LOSS MUTATED                                                            34
  20P LOSS WILD-TYPE                                                         339
D76V9, multiclass
                                                             clus
vv                                                            20P LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      1
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               34
                                                             clus
vv                                                            20P LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       11
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                339
D76V10, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     1  34
  20P LOSS WILD-TYPE  11 345
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      1   34
  20P LOSS WILD-TYPE   11  345
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 1                 11
  YES               34                345
D76V11, continuous
D76V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P LOSS MUTATED    26   1   0   3
  20P LOSS WILD-TYPE 291   6   4  15
D76V13, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  R0               26                291
  R1                1                  6
  R2                0                  4
  RX                3                 15

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    22  11
  20Q LOSS WILD-TYPE 213 111
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                33                324 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                11                111 
$`20Q LOSS MUTATED`
TCGA-18-3411 TCGA-18-3415 TCGA-18-3416 TCGA-18-4721 TCGA-21-1078 TCGA-22-4604 
       46.52        59.51        28.34        90.51        15.55        13.12 
TCGA-22-5478 TCGA-33-4583 TCGA-33-4586 TCGA-34-7107 TCGA-39-5021 TCGA-39-5034 
        0.79       141.34        14.07         1.08        68.58        36.39 
TCGA-43-3394 TCGA-46-6025 TCGA-52-7622 TCGA-56-7580 TCGA-56-A49D TCGA-58-8392 
       27.02        10.65        17.79         1.32         0.99        16.47 
TCGA-60-2698 TCGA-60-2712 TCGA-66-2755 TCGA-66-2766 TCGA-66-2791 TCGA-77-7142 
       10.22         9.01         0.92         1.02         5.03        42.25 
TCGA-77-8144 TCGA-77-8153 TCGA-77-8156 TCGA-85-7698 TCGA-85-7950 TCGA-85-8071 
       27.39        55.33         0.33         1.61         1.97         0.46 
TCGA-85-8352 TCGA-92-8065 TCGA-L3-A524 
        2.20         2.27        14.76 

$`20Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3412 
       12.16         4.47        81.07        79.46         4.80        11.34 
TCGA-18-3414 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 TCGA-18-4086 
       13.02        24.92         1.61        43.76         6.15         2.79 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1070 TCGA-21-1071 TCGA-21-1072 TCGA-21-1075 
        3.02        27.16       119.54        46.88        99.16        70.13 
TCGA-21-1076 TCGA-21-1077 TCGA-21-1079 TCGA-21-1080 TCGA-21-1081 TCGA-21-1082 
       60.89        34.78        31.69       122.43         9.30       119.80 
TCGA-21-1083 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-5786 TCGA-21-5787 
        8.78        31.63        88.08        29.85        21.73        10.82 
TCGA-21-A5DI TCGA-22-0940 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       32.19        19.99         7.33        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
        1.74        14.10        27.02        48.82        20.45        35.08 
TCGA-22-4594 TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4605 
       48.33        24.13         0.56        38.17        34.75        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5479 TCGA-22-5480 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22        54.28        71.34        79.20        11.74 
TCGA-22-5483 TCGA-22-5485 TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 
       18.84        30.08        62.86        56.32        16.60         7.63 
TCGA-33-4533 TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4587 
      114.05        97.94        43.10       173.79       103.53        54.44 
TCGA-33-4589 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 
       10.98        19.76        26.99         2.63        61.61        31.50 
TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 
       28.96        32.84        31.23        50.24        51.78        32.68 
TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 
        9.04        10.82         7.73        14.07        22.95         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-3789 TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 
        4.96         3.95         0.43         0.39         6.54         8.09 
TCGA-37-4132 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-37-5819 TCGA-39-5011 
        7.46         7.82         6.81         0.39         3.39        47.80 
TCGA-39-5016 TCGA-39-5019 TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 
       74.07        44.71        55.17        70.03        60.76         1.71 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 
       24.33         1.94        27.35        15.58        35.64        35.70 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3920 
       17.88        17.06        24.59        22.49        13.12        11.74 
TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.47        18.05        12.36        12.46        10.19         5.42 
TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8116 
        3.78         6.97         1.58        66.51         6.64         6.35 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 TCGA-51-4081 
        2.93         9.96        13.87         0.39         0.39        29.95 
TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-52-7812 TCGA-56-1622 TCGA-56-5897 
        5.42        30.31         8.75        27.45        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 
        2.04         1.02         0.99         0.43         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.85         0.20         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A4BX 
        1.18         2.07         0.56         0.53         1.12         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 
        0.99         1.02         0.13         0.26         0.03        13.25 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L 
       12.43         8.94        44.09         0.66        34.36        36.59 
TCGA-58-A46N TCGA-60-2695 TCGA-60-2696 TCGA-60-2697 TCGA-60-2703 TCGA-60-2704 
       17.72        21.07         3.58        12.23        96.82        37.94 
TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 
       92.71        21.70        80.42        49.48        66.51        41.39 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 
       56.91        50.33        35.34        48.49        42.61         3.16 
TCGA-60-2721 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 
       32.28        29.85        35.90        23.57        26.79        11.77 
TCGA-66-2727 TCGA-66-2734 TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 
       16.96        43.10         2.01        21.07         0.99         1.02 
TCGA-66-2754 TCGA-66-2756 TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2763 
        2.01         0.99         0.99        20.98        25.02         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 
        2.01         2.01         2.01         7.07        23.01        19.00 
TCGA-66-2773 TCGA-66-2777 TCGA-66-2778 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 
        3.02         2.01        19.00        12.03         3.98        12.00 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 TCGA-66-2787 TCGA-66-2788 TCGA-66-2789 
       24.95         1.94        25.97        40.01        22.98         4.04 
TCGA-66-2790 TCGA-66-2792 TCGA-66-2793 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       22.98        30.02        10.06        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
        2.73         6.64         6.94         8.02         3.12        29.56 
TCGA-77-6843 TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 
       73.08        75.09        23.28        11.18        89.95        20.78 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 
        0.49        70.09       106.95         0.16        46.78        15.75 
TCGA-77-8007 TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 
        6.51        86.76        53.95        82.92       104.09         9.63 
TCGA-77-8154 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
       35.90        30.81        23.44         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7697 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-8048 
        0.59         0.33         0.03         1.15         1.25         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53         1.41         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 
        1.45         1.78         1.97         1.81         1.78         2.01 
TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 TCGA-85-8664 
        0.66         0.72         0.66         0.89         0.13         0.10 
TCGA-85-8666 TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-85-A53L 
        0.46         0.46         0.82         0.62         0.79         0.43 
TCGA-90-6837 TCGA-90-7766 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-90-A4ED 
       24.89         1.55         2.93         0.59         3.29         8.02 
TCGA-90-A4EE TCGA-92-7340 TCGA-92-7341 TCGA-92-8063 TCGA-92-8064 TCGA-94-7033 
       10.88         2.70         3.48         4.01         5.26         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 
        0.16         4.70        39.88        44.15         6.18         6.90 
TCGA-98-7454 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        8.42         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15         1.18         3.02        56.61        50.86        37.32 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.33               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            141.34             173.79 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             13.12              11.74 
[1] "0.3 - 141.3 (13.1)" "0.0 - 173.8 (11.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D77V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  20Q LOSS MUTATED         0        3       15        1         2         7
  20Q LOSS WILD-TYPE       1       64      116        0        43        58
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  20Q LOSS MUTATED            5          2        0
  20Q LOSS WILD-TYPE         48         18        5
D77V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED     4  27   4   0
  20Q LOSS WILD-TYPE  88 212  38  18
D77V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1                4                 88
  T2               27                212
  T3                4                 38
  T4                0                 18
                    vv
clus                  N0  N1  N2  N3
  20Q LOSS MUTATED    23   7   4   1
  20Q LOSS WILD-TYPE 222  96  29   4
D77V5, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0               23                222
  N1                7                 96
  N2                4                 29
  N3                1                  4
                    vv
clus                  M0  M1  MX
  20Q LOSS MUTATED    33   0   2
  20Q LOSS WILD-TYPE 300   5  45
D77V6, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  M0               33                300
  M1                0                  5
  MX                2                 45
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     8  27
  20Q LOSS WILD-TYPE  90 266
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      8   27
  20Q LOSS WILD-TYPE   90  266
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE                8                 90
  MALE                 27                266
D77V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                       0
  20Q LOSS WILD-TYPE                                    12
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  20Q LOSS MUTATED                                        0
  20Q LOSS WILD-TYPE                                      5
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  20Q LOSS MUTATED                                         0
  20Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q LOSS MUTATED                                                            35
  20Q LOSS WILD-TYPE                                                         338
D77V9, multiclass
                                                             clus
vv                                                            20Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      0
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     0
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               35
                                                             clus
vv                                                            20Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       12
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       5
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                338
D77V10, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     0  35
  20Q LOSS WILD-TYPE  12 344
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      0   35
  20Q LOSS WILD-TYPE   12  344
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 0                 12
  YES               35                344
D77V11, continuous
D77V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q LOSS MUTATED    29   1   0   3
  20Q LOSS WILD-TYPE 288   6   4  15
D77V13, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  R0               29                288
  R1                1                  6
  R2                0                  4
  RX                3                 15

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED   129  62
  21Q LOSS WILD-TYPE 106  60
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               191                166 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                62                 60 
$`21Q LOSS MUTATED`
TCGA-18-3408 TCGA-18-3411 TCGA-18-3412 TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 
       81.07        46.52        11.34        13.02        59.51        28.34 
TCGA-18-3417 TCGA-18-4083 TCGA-18-4086 TCGA-18-4721 TCGA-21-1070 TCGA-21-1072 
       24.92         6.15         2.79        90.51       119.54        99.16 
TCGA-21-1075 TCGA-21-1076 TCGA-21-1079 TCGA-21-1083 TCGA-21-5786 TCGA-21-5787 
       70.13        60.89        31.69         8.78        21.73        10.82 
TCGA-22-0944 TCGA-22-1002 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4591 
        7.33         4.31        14.10        27.02        48.82        20.45 
TCGA-22-4593 TCGA-22-4594 TCGA-22-4599 TCGA-22-4604 TCGA-22-4613 TCGA-22-5471 
       35.08        48.33        38.17        13.12        11.77        31.73 
TCGA-22-5473 TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5480 
       63.52        14.60        44.22         0.79        54.28        71.34 
TCGA-22-5482 TCGA-22-5483 TCGA-22-5491 TCGA-33-4532 TCGA-33-4538 TCGA-33-4547 
       11.74        18.84        56.32         7.63        97.94        43.10 
TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-34-2604 TCGA-34-2608 TCGA-34-5231 
      103.53        14.07        10.98        31.50        32.84        50.24 
TCGA-34-5236 TCGA-34-5241 TCGA-34-5927 TCGA-34-7107 TCGA-37-3789 TCGA-37-3792 
        9.04        14.07        22.95         1.08         0.43         0.39 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-5819 TCGA-39-5016 TCGA-39-5019 
        8.09         7.82         6.81         3.39        74.07        44.71 
TCGA-39-5027 TCGA-39-5029 TCGA-39-5031 TCGA-39-5034 TCGA-39-5036 TCGA-39-5037 
       60.76        24.33        27.35        36.39        35.64        35.70 
TCGA-39-5039 TCGA-43-2576 TCGA-43-3920 TCGA-43-5668 TCGA-43-6771 TCGA-43-7656 
       17.88        24.59        11.74        11.47         5.42         6.97 
TCGA-43-8116 TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4080 
        6.35         2.93         9.96        10.65        13.87         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-56-1622 TCGA-56-5897 
       29.95        17.79         5.42        30.31        28.93         0.10 
TCGA-56-6545 TCGA-56-6546 TCGA-56-7222 TCGA-56-7223 TCGA-56-7579 TCGA-56-7580 
        2.04         1.02         0.43         0.99         1.45         1.32 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8629 TCGA-56-A49D 
        0.85         0.20         0.03         1.35         1.12         0.99 
TCGA-56-A4BX TCGA-56-A4ZJ TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 
        1.51         1.02         0.03        13.25        12.43         8.94 
TCGA-58-8392 TCGA-58-A46K TCGA-60-2698 TCGA-60-2703 TCGA-60-2707 TCGA-60-2708 
       16.47        34.36        10.22        96.82        21.70        80.42 
TCGA-60-2711 TCGA-60-2712 TCGA-60-2715 TCGA-60-2719 TCGA-60-2721 TCGA-60-2725 
       41.39         9.01        35.34        42.61        32.28        26.79 
TCGA-60-2726 TCGA-66-2734 TCGA-66-2742 TCGA-66-2753 TCGA-66-2754 TCGA-66-2755 
       11.77        43.10        21.07         1.02         2.01         0.92 
TCGA-66-2757 TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2771 
        0.99        20.98        25.02         2.01         1.02        19.00 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2782 TCGA-66-2785 TCGA-66-2786 
        2.01        12.03         3.98        12.00         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 TCGA-66-2793 TCGA-66-2795 
       40.01        22.98         5.03        30.02        10.06         4.01 
TCGA-66-2800 TCGA-68-7755 TCGA-68-7756 TCGA-68-8250 TCGA-68-8251 TCGA-77-6842 
       49.05         2.73         6.64         8.02         3.12        29.56 
TCGA-77-7141 TCGA-77-7335 TCGA-77-7463 TCGA-77-8008 TCGA-77-8009 TCGA-77-8148 
        0.49        70.09        46.78        86.76        53.95         9.63 
TCGA-77-8153 TCGA-77-8154 TCGA-77-8156 TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 
       55.33        35.90         0.33        23.44         0.36         0.79 
TCGA-85-6798 TCGA-85-7696 TCGA-85-7698 TCGA-85-7843 TCGA-85-8048 TCGA-85-8070 
        1.12         0.59         1.61         1.15         0.85         1.41 
TCGA-85-8071 TCGA-85-8276 TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 
        0.46         0.43         1.45         1.97         1.81         2.20 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8481 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL 
        2.01         0.66         0.66         0.10         0.46         0.46 
TCGA-85-A4QR TCGA-85-A53L TCGA-90-7766 TCGA-90-7769 TCGA-90-A4ED TCGA-90-A4EE 
        0.82         0.43         1.55         0.59         8.02        10.88 
TCGA-92-7341 TCGA-92-8064 TCGA-94-7557 TCGA-94-7943 TCGA-98-8021 TCGA-98-8022 
        3.48         5.26         0.16         4.70        13.58         7.33 
TCGA-98-8023 TCGA-L3-A4E7 TCGA-LA-A446 TCGA-MF-A522 TCGA-NC-A5HE 
       10.13         1.15         1.18         3.02        56.61 

$`21Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3419 TCGA-18-3421 
       12.16         4.47        79.46         4.80         1.61        43.76 
TCGA-18-5592 TCGA-18-5595 TCGA-21-1071 TCGA-21-1077 TCGA-21-1078 TCGA-21-1080 
        3.02        27.16        46.88        34.78        15.55       122.43 
TCGA-21-1081 TCGA-21-1082 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 TCGA-21-A5DI 
        9.30       119.80        31.63        88.08        29.85        32.19 
TCGA-22-0940 TCGA-22-1000 TCGA-22-1005 TCGA-22-1011 TCGA-22-4595 TCGA-22-4596 
       19.99        14.93        64.21         1.74        24.13         0.56 
TCGA-22-4601 TCGA-22-4605 TCGA-22-4607 TCGA-22-4609 TCGA-22-5472 TCGA-22-5481 
       34.75        32.02        19.30         9.53        64.90        79.20 
TCGA-22-5485 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 TCGA-33-4566 TCGA-33-4583 
       30.08        62.86        16.60       114.05       173.79       141.34 
TCGA-33-4587 TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2600 TCGA-34-2605 
       54.44        19.76        26.99         2.63        61.61        28.96 
TCGA-34-2609 TCGA-34-5232 TCGA-34-5234 TCGA-34-5239 TCGA-34-5240 TCGA-34-5928 
       31.23        51.78        32.68        10.82         7.73         5.52 
TCGA-34-5929 TCGA-37-3783 TCGA-37-4129 TCGA-37-4132 TCGA-37-4141 TCGA-39-5011 
        4.96         3.95         6.54         7.46         0.39        47.80 
TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 TCGA-39-5028 TCGA-39-5030 TCGA-39-5035 
       68.58        55.17        70.03         1.71         1.94        15.58 
TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 TCGA-43-5670 TCGA-43-6143 
       17.06        22.49        13.12        27.02        18.05        12.36 
TCGA-43-6647 TCGA-43-6770 TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 
       12.46        10.19         3.78         1.58        66.51         6.64 
TCGA-51-4079 TCGA-52-7811 TCGA-52-7812 TCGA-56-7221 TCGA-56-8504 TCGA-56-8622 
        0.39         8.75        27.45         0.99         5.82         1.78 
TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-A4BY TCGA-56-A4ZK 
        1.18         2.07         0.56         0.53         0.99         0.13 
TCGA-56-A5DS TCGA-58-8391 TCGA-58-8393 TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 
        0.26        44.09         0.66        36.59        17.72        21.07 
TCGA-60-2696 TCGA-60-2697 TCGA-60-2704 TCGA-60-2706 TCGA-60-2709 TCGA-60-2710 
        3.58        12.23        37.94        92.71        49.48        66.51 
TCGA-60-2713 TCGA-60-2714 TCGA-60-2716 TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 
       56.91        50.33        48.49         3.16        29.85        35.90 
TCGA-60-2724 TCGA-66-2727 TCGA-66-2737 TCGA-66-2744 TCGA-66-2756 TCGA-66-2763 
       23.57        16.96         2.01         0.99         0.99         0.99 
TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 TCGA-66-2778 
        2.01         2.01         7.07        23.01         3.02        19.00 
TCGA-66-2783 TCGA-66-2789 TCGA-66-2790 TCGA-66-2794 TCGA-68-7757 TCGA-77-6843 
       24.95         4.04        22.98        54.08         6.94        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7142 
       75.09        23.28        11.18        89.95        20.78        42.25 
TCGA-77-7337 TCGA-77-7338 TCGA-77-7465 TCGA-77-8007 TCGA-77-8130 TCGA-77-8139 
      106.95         0.16        15.75         6.51        82.92       104.09 
TCGA-77-8144 TCGA-77-A5GB TCGA-85-7697 TCGA-85-7699 TCGA-85-7844 TCGA-85-7950 
       27.39        30.81         0.33         0.03         1.25         1.97 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8072 TCGA-85-8277 TCGA-85-8288 TCGA-85-8353 
        1.97         0.53         1.18         0.36         1.78         1.78 
TCGA-85-8479 TCGA-85-8580 TCGA-85-8582 TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 
        0.72         0.89         0.13         0.62         0.79        24.89 
TCGA-90-7767 TCGA-90-7964 TCGA-92-7340 TCGA-92-8063 TCGA-92-8065 TCGA-94-7033 
        2.93         3.29         2.70         4.01         2.27         2.86 
TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 TCGA-98-8020 
       39.88        44.15         6.18         6.90         8.42         2.73 
TCGA-J1-A4AH TCGA-L3-A524 TCGA-NC-A5HG TCGA-NC-A5HI 
        7.30        14.76        50.86        37.32 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.03               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            119.54             173.79 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            10.820             14.845 
[1] "0.0 - 119.5 (10.8)" "0.0 - 173.8 (14.8)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
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  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  21Q LOSS MUTATED         0       38       71        1        25        30
  21Q LOSS WILD-TYPE       1       29       60        0        20        35
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  21Q LOSS MUTATED           26         11        4
  21Q LOSS WILD-TYPE         27          9        1
D78V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q LOSS MUTATED    49 126  22  10
  21Q LOSS WILD-TYPE  43 113  20   8
D78V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               49                 43
  T2              126                113
  T3               22                 20
  T4               10                  8
                    vv
clus                  N0  N1  N2  N3
  21Q LOSS MUTATED   134  55  15   1
  21Q LOSS WILD-TYPE 111  48  18   4
D78V5, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0              134                111
  N1               55                 48
  N2               15                 18
  N3                1                  4
                    vv
clus                  M0  M1  MX
  21Q LOSS MUTATED   181   4  19
  21Q LOSS WILD-TYPE 152   1  28
D78V6, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  M0              181                152
  M1                4                  1
  MX               19                 28
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    36 171
  21Q LOSS WILD-TYPE  62 122
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     36  171
  21Q LOSS WILD-TYPE   62  122
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               36                 62
  MALE                171                122
D78V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                       5
  21Q LOSS WILD-TYPE                                     7
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  21Q LOSS MUTATED                                        2
  21Q LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  21Q LOSS MUTATED                                         0
  21Q LOSS WILD-TYPE                                       1
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q LOSS MUTATED                                                           200
  21Q LOSS WILD-TYPE                                                         173
D78V9, multiclass
                                                             clus
vv                                                            21Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      5
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              200
                                                             clus
vv                                                            21Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                        7
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                173
D78V10, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED     6 201
  21Q LOSS WILD-TYPE   6 178
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED      6  201
  21Q LOSS WILD-TYPE    6  178
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                 6                  6
  YES              201                178
D78V11, continuous
D78V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q LOSS MUTATED   171   3   2   7
  21Q LOSS WILD-TYPE 146   4   2  11
D78V13, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  R0              171                146
  R1                3                  4
  R2                2                  2
  RX                7                 11

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED    39  25
  22Q LOSS WILD-TYPE 196  97
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                64                293 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                25                 97 
$`22Q LOSS MUTATED`
TCGA-18-3407 TCGA-18-3417 TCGA-18-4083 TCGA-21-1070 TCGA-21-1071 TCGA-21-1080 
        4.47        24.92         6.15       119.54        46.88       122.43 
TCGA-21-5783 TCGA-21-5787 TCGA-21-A5DI TCGA-22-0940 TCGA-22-1016 TCGA-22-4594 
       88.08        10.82        32.19        19.99        27.02        48.33 
TCGA-22-5480 TCGA-22-5483 TCGA-22-5485 TCGA-33-4583 TCGA-33-4587 TCGA-33-6737 
       71.34        18.84        30.08       141.34        54.44        19.76 
TCGA-34-5928 TCGA-37-3792 TCGA-37-4129 TCGA-37-4132 TCGA-37-5819 TCGA-39-5011 
        5.52         0.39         6.54         7.46         3.39        47.80 
TCGA-39-5016 TCGA-39-5029 TCGA-39-5040 TCGA-43-2578 TCGA-43-2581 TCGA-43-6771 
       74.07        24.33        17.06        22.49        13.12         5.42 
TCGA-43-7658 TCGA-52-7812 TCGA-56-7222 TCGA-60-2695 TCGA-66-2727 TCGA-66-2753 
       66.51        27.45         0.43        21.07        16.96         1.02 
TCGA-66-2754 TCGA-66-2757 TCGA-66-2759 TCGA-66-2766 TCGA-66-2771 TCGA-66-2778 
        2.01         0.99        25.02         1.02        19.00        19.00 
TCGA-66-2782 TCGA-66-2789 TCGA-66-2790 TCGA-66-2791 TCGA-66-2793 TCGA-68-8250 
       12.00         4.04        22.98         5.03        10.06         8.02 
TCGA-77-7138 TCGA-77-7337 TCGA-77-8139 TCGA-85-7697 TCGA-85-8048 TCGA-85-8072 
       11.18       106.95       104.09         0.33         0.85         1.18 
TCGA-85-8664 TCGA-85-8666 TCGA-85-A53L TCGA-90-A4ED TCGA-90-A4EE TCGA-92-8063 
        0.10         0.46         0.43         8.02        10.88         4.01 
TCGA-92-8065 TCGA-98-7454 TCGA-MF-A522 TCGA-NC-A5HE 
        2.27         8.42         3.02        56.61 

$`22Q LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3408 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16        81.07        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3416 TCGA-18-3419 TCGA-18-3421 TCGA-18-4086 
       13.02        59.51        28.34         1.61        43.76         2.79 
TCGA-18-4721 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 TCGA-21-1075 TCGA-21-1076 
       90.51         3.02        27.16        99.16        70.13        60.89 
TCGA-21-1077 TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-1082 TCGA-21-1083 
       34.78        15.55        31.69         9.30       119.80         8.78 
TCGA-21-5782 TCGA-21-5784 TCGA-21-5786 TCGA-22-0944 TCGA-22-1000 TCGA-22-1002 
       31.63        29.85        21.73         7.33        14.93         4.31 
TCGA-22-1005 TCGA-22-1011 TCGA-22-1012 TCGA-22-1017 TCGA-22-4591 TCGA-22-4593 
       64.21         1.74        14.10        48.82        20.45        35.08 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4607 TCGA-22-4609 TCGA-22-4613 TCGA-22-5471 TCGA-22-5472 TCGA-22-5473 
       19.30         9.53        11.77        31.73        64.90        63.52 
TCGA-22-5474 TCGA-22-5477 TCGA-22-5478 TCGA-22-5479 TCGA-22-5481 TCGA-22-5482 
       14.60        44.22         0.79        54.28        79.20        11.74 
TCGA-22-5489 TCGA-22-5491 TCGA-22-5492 TCGA-33-4532 TCGA-33-4533 TCGA-33-4538 
       62.86        56.32        16.60         7.63       114.05        97.94 
TCGA-33-4547 TCGA-33-4566 TCGA-33-4582 TCGA-33-4586 TCGA-33-4589 TCGA-33-6738 
       43.10       173.79       103.53        14.07        10.98        26.99 
TCGA-34-2596 TCGA-34-2600 TCGA-34-2604 TCGA-34-2605 TCGA-34-2608 TCGA-34-2609 
        2.63        61.61        31.50        28.96        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5929 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         4.96         1.08         3.95         0.43 
TCGA-37-4130 TCGA-37-4133 TCGA-37-4135 TCGA-37-4141 TCGA-39-5019 TCGA-39-5021 
        8.09         7.82         6.81         0.39        44.71        68.58 
TCGA-39-5022 TCGA-39-5024 TCGA-39-5027 TCGA-39-5028 TCGA-39-5030 TCGA-39-5031 
       55.17        70.03        60.76         1.71         1.94        27.35 
TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 TCGA-39-5037 TCGA-39-5039 TCGA-43-2576 
       36.39        15.58        35.64        35.70        17.88        24.59 
TCGA-43-3394 TCGA-43-3920 TCGA-43-5668 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 
       27.02        11.74        11.47        18.05        12.36        12.46 
TCGA-43-6770 TCGA-43-6773 TCGA-43-7656 TCGA-43-7657 TCGA-43-8115 TCGA-43-8116 
       10.19         3.78         6.97         1.58         6.64         6.35 
TCGA-43-8118 TCGA-46-3768 TCGA-46-6025 TCGA-46-6026 TCGA-51-4079 TCGA-51-4080 
        2.93         9.96        10.65        13.87         0.39         0.39 
TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7810 TCGA-52-7811 TCGA-56-1622 
       29.95        17.79         5.42        30.31         8.75        28.93 
TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7221 TCGA-56-7223 TCGA-56-7579 
        0.10         2.04         1.02         0.99         0.99         1.45 
TCGA-56-7580 TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 
        1.32         0.85         0.20         0.03         1.35         5.82 
TCGA-56-8622 TCGA-56-8624 TCGA-56-8625 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 
        1.78         1.18         2.07         0.56         0.53         1.12 
TCGA-56-A49D TCGA-56-A4BX TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A4ZK TCGA-56-A5DS 
        0.99         1.51         0.99         1.02         0.13         0.26 
TCGA-58-8386 TCGA-58-8387 TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 
        0.03        13.25        12.43         8.94        44.09        16.47 
TCGA-58-8393 TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2696 TCGA-60-2697 
        0.66        34.36        36.59        17.72         3.58        12.23 
TCGA-60-2698 TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 
       10.22        96.82        37.94        92.71        21.70        80.42 
TCGA-60-2709 TCGA-60-2710 TCGA-60-2711 TCGA-60-2712 TCGA-60-2713 TCGA-60-2714 
       49.48        66.51        41.39         9.01        56.91        50.33 
TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 TCGA-60-2720 TCGA-60-2721 TCGA-60-2722 
       35.34        48.49        42.61         3.16        32.28        29.85 
TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-60-2726 TCGA-66-2734 TCGA-66-2737 
       35.90        23.57        26.79        11.77        43.10         2.01 
TCGA-66-2742 TCGA-66-2744 TCGA-66-2755 TCGA-66-2756 TCGA-66-2758 TCGA-66-2763 
       21.07         0.99         0.92         0.99        20.98         0.99 
TCGA-66-2765 TCGA-66-2767 TCGA-66-2768 TCGA-66-2769 TCGA-66-2770 TCGA-66-2773 
        2.01         2.01         2.01         7.07        23.01         3.02 
TCGA-66-2777 TCGA-66-2780 TCGA-66-2781 TCGA-66-2783 TCGA-66-2785 TCGA-66-2786 
        2.01        12.03         3.98        24.95         1.94        25.97 
TCGA-66-2787 TCGA-66-2788 TCGA-66-2792 TCGA-66-2794 TCGA-66-2795 TCGA-66-2800 
       40.01        22.98        30.02        54.08         4.01        49.05 
TCGA-68-7755 TCGA-68-7756 TCGA-68-7757 TCGA-68-8251 TCGA-77-6842 TCGA-77-6843 
        2.73         6.64         6.94         3.12        29.56        73.08 
TCGA-77-6844 TCGA-77-6845 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 TCGA-77-7142 
       75.09        23.28        89.95        20.78         0.49        42.25 
TCGA-77-7335 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 TCGA-77-8008 
       70.09         0.16        46.78        15.75         6.51        86.76 
TCGA-77-8009 TCGA-77-8130 TCGA-77-8144 TCGA-77-8148 TCGA-77-8153 TCGA-77-8154 
       53.95        82.92        27.39         9.63        55.33        35.90 
TCGA-77-8156 TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 
        0.33        30.81        23.44         0.36         0.79         1.12 
TCGA-85-7696 TCGA-85-7698 TCGA-85-7699 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 
        0.59         1.61         0.03         1.15         1.25         1.97 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8071 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53         1.41         0.46         0.43         0.36 
TCGA-85-8287 TCGA-85-8288 TCGA-85-8350 TCGA-85-8351 TCGA-85-8352 TCGA-85-8353 
        1.45         1.78         1.97         1.81         2.20         1.78 
TCGA-85-8354 TCGA-85-8355 TCGA-85-8479 TCGA-85-8481 TCGA-85-8580 TCGA-85-8582 
        2.01         0.66         0.72         0.66         0.89         0.13 
TCGA-85-A4CL TCGA-85-A4QR TCGA-85-A50M TCGA-85-A513 TCGA-90-6837 TCGA-90-7766 
        0.46         0.82         0.62         0.79        24.89         1.55 
TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 
        2.93         0.59         3.29         2.70         3.48         5.26 
TCGA-94-7033 TCGA-94-7557 TCGA-94-7943 TCGA-96-7544 TCGA-96-7545 TCGA-96-8169 
        2.86         0.16         4.70        39.88        44.15         6.18 
TCGA-96-8170 TCGA-98-8020 TCGA-98-8021 TCGA-98-8022 TCGA-98-8023 TCGA-J1-A4AH 
        6.90         2.73        13.58         7.33        10.13         7.30 
TCGA-L3-A4E7 TCGA-L3-A524 TCGA-LA-A446 TCGA-NC-A5HG TCGA-NC-A5HI 
        1.15        14.76         1.18        50.86        37.32 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.10               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            141.34             173.79 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
             12.56              11.74 
[1] "0.1 - 141.3 (12.6)" "0.0 - 173.8 (11.7)"
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5474         TCGA-22-5477         TCGA-22-5478 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5479         TCGA-22-5480         TCGA-22-5481 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-5482         TCGA-22-5483         TCGA-22-5485 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-22-5489         TCGA-22-5491         TCGA-22-5492 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-33-4583         TCGA-33-4586         TCGA-33-4587 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2600         TCGA-34-2604 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-2605         TCGA-34-2608         TCGA-34-2609 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5231         TCGA-34-5232         TCGA-34-5234 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5236         TCGA-34-5239         TCGA-34-5240 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-34-5241         TCGA-34-5927         TCGA-34-5928 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-34-5929         TCGA-34-7107         TCGA-37-3783 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-37-4130         TCGA-37-4132         TCGA-37-4133 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-37-4135         TCGA-37-4141         TCGA-37-5819 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5036         TCGA-39-5037 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-39-5039         TCGA-39-5040         TCGA-43-2576 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-43-5668         TCGA-43-5670 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-6143         TCGA-43-6647         TCGA-43-6770 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-6771         TCGA-43-6773         TCGA-43-7656 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-21-5782         TCGA-21-5783         TCGA-21-5784 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-21-5786         TCGA-21-5787         TCGA-21-A5DI 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4593         TCGA-22-4594 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-22-4595         TCGA-22-4596         TCGA-22-4599 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4601         TCGA-22-4604         TCGA-22-4605 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-4613 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-22-5471         TCGA-22-5472         TCGA-22-5473 
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  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-43-7657         TCGA-43-7658         TCGA-43-8115 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-43-8116         TCGA-43-8118         TCGA-46-3768 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-46-6025         TCGA-46-6026         TCGA-51-4079 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-52-7622 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-52-7809         TCGA-52-7810         TCGA-52-7811 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-52-7812         TCGA-56-1622         TCGA-56-5897 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-6545         TCGA-56-6546         TCGA-56-7221 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7222         TCGA-56-7223         TCGA-56-7579 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7580         TCGA-56-7582         TCGA-56-7730 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-7822         TCGA-56-8503         TCGA-56-8504 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-8622         TCGA-56-8624         TCGA-56-8625 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-8626         TCGA-56-8628         TCGA-56-8629 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-A49D         TCGA-56-A4BX         TCGA-56-A4BY 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-56-A4ZJ         TCGA-56-A4ZK         TCGA-56-A5DS 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-8386         TCGA-58-8387         TCGA-58-8388 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-8390         TCGA-58-8391         TCGA-58-8392 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-8393         TCGA-58-A46K         TCGA-58-A46L 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-58-A46N         TCGA-60-2695         TCGA-60-2696 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2707 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2709         TCGA-60-2710 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2711         TCGA-60-2712         TCGA-60-2713 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2714         TCGA-60-2715         TCGA-60-2716 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2719         TCGA-60-2720         TCGA-60-2721 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2722         TCGA-60-2723         TCGA-60-2724 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-60-2725         TCGA-60-2726         TCGA-66-2727 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7755 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-68-7756         TCGA-68-7757         TCGA-68-8250 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-68-8251         TCGA-77-6842         TCGA-77-6843 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-6844         TCGA-77-6845         TCGA-77-7138 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7139         TCGA-77-7140         TCGA-77-7141 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-7142         TCGA-77-7335         TCGA-77-7337 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-77-7338         TCGA-77-7463         TCGA-77-7465 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8007         TCGA-77-8008         TCGA-77-8009 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8130         TCGA-77-8139         TCGA-77-8144 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-77-8148         TCGA-77-8153         TCGA-77-8154 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-77-8156         TCGA-77-A5GB         TCGA-77-A5GH 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-6560         TCGA-85-6561         TCGA-85-6798 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7696         TCGA-85-7697         TCGA-85-7698 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-7699         TCGA-85-7843         TCGA-85-7844 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-7950         TCGA-85-8048         TCGA-85-8049 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-8052         TCGA-85-8070         TCGA-85-8071 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8072         TCGA-85-8276         TCGA-85-8277 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8287         TCGA-85-8288         TCGA-85-8350 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8351         TCGA-85-8352         TCGA-85-8353 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8354         TCGA-85-8355         TCGA-85-8479 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8481         TCGA-85-8580         TCGA-85-8582 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-8664         TCGA-85-8666         TCGA-85-A4CL 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-85-A4QR         TCGA-85-A50M         TCGA-85-A513 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-85-A53L         TCGA-90-6837         TCGA-90-7766 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-7767         TCGA-90-7769         TCGA-90-7964 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-90-A4ED         TCGA-90-A4EE         TCGA-92-7340 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-7341         TCGA-92-8063         TCGA-92-8064 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-92-8065         TCGA-94-7033         TCGA-94-7557 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-94-7943         TCGA-96-7544         TCGA-96-7545 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-96-8169         TCGA-96-8170         TCGA-98-7454 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-98-8020         TCGA-98-8021         TCGA-98-8022 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-98-8023         TCGA-J1-A4AH         TCGA-L3-A4E7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-L3-A524         TCGA-LA-A446         TCGA-MF-A522 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-NC-A5HE         TCGA-NC-A5HG         TCGA-NC-A5HI 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D79V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  22Q LOSS MUTATED         1       10       17        0        10        12
  22Q LOSS WILD-TYPE       0       57      114        1        35        53
                    vv
clus                 STAGE IIIA STAGE IIIB STAGE IV
  22Q LOSS MUTATED           14          4        2
  22Q LOSS WILD-TYPE         39         16        3
D79V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED    16  43  10   2
  22Q LOSS WILD-TYPE  76 196  32  16
D79V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               16                 76
  T2               43                196
  T3               10                 32
  T4                2                 16
                    vv
clus                  N0  N1  N2  N3
  22Q LOSS MUTATED    39  18  11   3
  22Q LOSS WILD-TYPE 206  85  22   2
D79V5, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0               39                206
  N1               18                 85
  N2               11                 22
  N3                3                  2
                    vv
clus                  M0  M1  MX
  22Q LOSS MUTATED    60   2   8
  22Q LOSS WILD-TYPE 273   3  39
D79V6, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  M0               60                273
  M1                2                  3
  MX                8                 39
D79V7, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    18  53
  22Q LOSS WILD-TYPE  80 240
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     18   53
  22Q LOSS WILD-TYPE   80  240
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               18                 80
  MALE                 53                240
D79V8, continuous
                    vv
clus                 LUNG BASALOID SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                       2
  22Q LOSS WILD-TYPE                                    10
                    vv
clus                 LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  22Q LOSS MUTATED                                        2
  22Q LOSS WILD-TYPE                                      3
                    vv
clus                 LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  22Q LOSS MUTATED                                         1
  22Q LOSS WILD-TYPE                                       0
                    vv
clus                 LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q LOSS MUTATED                                                            66
  22Q LOSS WILD-TYPE                                                         307
D79V9, multiclass
                                                             clus
vv                                                            22Q LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                      2
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                     2
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                    1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               66
                                                             clus
vv                                                            22Q LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       10
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                       3
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                      0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)                307
D79V10, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED     3  68
  22Q LOSS WILD-TYPE   9 311
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      3   68
  22Q LOSS WILD-TYPE    9  311
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 3                  9
  YES               68                311
D79V11, continuous
D79V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q LOSS MUTATED    56   2   1   4
  22Q LOSS WILD-TYPE 261   5   3  14
D79V13, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  R0               56                261
  R1                2                  5
  R2                1                  3
  RX                4                 14

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    52  33
  XQ LOSS WILD-TYPE 183  89
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               85               272 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               33                89 
$`XQ LOSS MUTATED`
TCGA-18-3408 TCGA-18-3416 TCGA-18-4086 TCGA-18-5592 TCGA-18-5595 TCGA-21-1072 
       81.07        28.34         2.79         3.02        27.16        99.16 
TCGA-21-1080 TCGA-21-1082 TCGA-21-1083 TCGA-22-0940 TCGA-22-0944 TCGA-22-4591 
      122.43       119.80         8.78        19.99         7.33        20.45 
TCGA-22-4607 TCGA-22-4613 TCGA-22-5473 TCGA-22-5477 TCGA-22-5481 TCGA-22-5485 
       19.30        11.77        63.52        44.22        79.20        30.08 
TCGA-22-5491 TCGA-33-4532 TCGA-33-4582 TCGA-33-4587 TCGA-34-2600 TCGA-34-2605 
       56.32         7.63       103.53        54.44        61.61        28.96 
TCGA-34-5929 TCGA-37-4135 TCGA-37-4141 TCGA-39-5027 TCGA-39-5028 TCGA-39-5037 
        4.96         6.81         0.39        60.76         1.71        35.70 
TCGA-43-5668 TCGA-43-7656 TCGA-43-8116 TCGA-46-3768 TCGA-46-6025 TCGA-51-4080 
       11.47         6.97         6.35         9.96        10.65         0.39 
TCGA-52-7810 TCGA-56-7221 TCGA-56-7222 TCGA-56-7580 TCGA-56-8625 TCGA-56-A4ZK 
       30.31         0.99         0.43         1.32         2.07         0.13 
TCGA-58-8388 TCGA-58-8390 TCGA-58-8391 TCGA-58-8392 TCGA-60-2696 TCGA-60-2712 
       12.43         8.94        44.09        16.47         3.58         9.01 
TCGA-60-2713 TCGA-60-2721 TCGA-60-2726 TCGA-66-2727 TCGA-66-2754 TCGA-66-2757 
       56.91        32.28        11.77        16.96         2.01         0.99 
TCGA-66-2763 TCGA-66-2773 TCGA-66-2780 TCGA-66-2782 TCGA-66-2786 TCGA-66-2789 
        0.99         3.02        12.03        12.00        25.97         4.04 
TCGA-66-2790 TCGA-66-2795 TCGA-68-7755 TCGA-68-7756 TCGA-77-6843 TCGA-77-6845 
       22.98         4.01         2.73         6.64        73.08        23.28 
TCGA-77-7142 TCGA-77-8144 TCGA-77-8153 TCGA-77-8154 TCGA-85-7699 TCGA-85-8071 
       42.25        27.39        55.33        35.90         0.03         0.46 
TCGA-85-8288 TCGA-85-8352 TCGA-85-8479 TCGA-85-8580 TCGA-85-A4QR TCGA-90-7766 
        1.78         2.20         0.72         0.89         0.82         1.55 
TCGA-90-A4EE TCGA-92-8063 TCGA-96-7544 TCGA-98-8022 TCGA-LA-A446 TCGA-NC-A5HG 
       10.88         4.01        39.88         7.33         1.18        50.86 
TCGA-NC-A5HI 
       37.32 

$`XQ LOSS WILD-TYPE`
TCGA-18-3406 TCGA-18-3407 TCGA-18-3409 TCGA-18-3410 TCGA-18-3411 TCGA-18-3412 
       12.16         4.47        79.46         4.80        46.52        11.34 
TCGA-18-3414 TCGA-18-3415 TCGA-18-3417 TCGA-18-3419 TCGA-18-3421 TCGA-18-4083 
       13.02        59.51        24.92         1.61        43.76         6.15 
TCGA-18-4721 TCGA-21-1070 TCGA-21-1071 TCGA-21-1075 TCGA-21-1076 TCGA-21-1077 
       90.51       119.54        46.88        70.13        60.89        34.78 
TCGA-21-1078 TCGA-21-1079 TCGA-21-1081 TCGA-21-5782 TCGA-21-5783 TCGA-21-5784 
       15.55        31.69         9.30        31.63        88.08        29.85 
TCGA-21-5786 TCGA-21-5787 TCGA-21-A5DI TCGA-22-1000 TCGA-22-1002 TCGA-22-1005 
       21.73        10.82        32.19        14.93         4.31        64.21 
TCGA-22-1011 TCGA-22-1012 TCGA-22-1016 TCGA-22-1017 TCGA-22-4593 TCGA-22-4594 
        1.74        14.10        27.02        48.82        35.08        48.33 
TCGA-22-4595 TCGA-22-4596 TCGA-22-4599 TCGA-22-4601 TCGA-22-4604 TCGA-22-4605 
       24.13         0.56        38.17        34.75        13.12        32.02 
TCGA-22-4609 TCGA-22-5471 TCGA-22-5472 TCGA-22-5474 TCGA-22-5478 TCGA-22-5479 
        9.53        31.73        64.90        14.60         0.79        54.28 
TCGA-22-5480 TCGA-22-5482 TCGA-22-5483 TCGA-22-5489 TCGA-22-5492 TCGA-33-4533 
       71.34        11.74        18.84        62.86        16.60       114.05 
TCGA-33-4538 TCGA-33-4547 TCGA-33-4566 TCGA-33-4583 TCGA-33-4586 TCGA-33-4589 
       97.94        43.10       173.79       141.34        14.07        10.98 
TCGA-33-6737 TCGA-33-6738 TCGA-34-2596 TCGA-34-2604 TCGA-34-2608 TCGA-34-2609 
       19.76        26.99         2.63        31.50        32.84        31.23 
TCGA-34-5231 TCGA-34-5232 TCGA-34-5234 TCGA-34-5236 TCGA-34-5239 TCGA-34-5240 
       50.24        51.78        32.68         9.04        10.82         7.73 
TCGA-34-5241 TCGA-34-5927 TCGA-34-5928 TCGA-34-7107 TCGA-37-3783 TCGA-37-3789 
       14.07        22.95         5.52         1.08         3.95         0.43 
TCGA-37-3792 TCGA-37-4129 TCGA-37-4130 TCGA-37-4132 TCGA-37-4133 TCGA-37-5819 
        0.39         6.54         8.09         7.46         7.82         3.39 
TCGA-39-5011 TCGA-39-5016 TCGA-39-5019 TCGA-39-5021 TCGA-39-5022 TCGA-39-5024 
       47.80        74.07        44.71        68.58        55.17        70.03 
TCGA-39-5029 TCGA-39-5030 TCGA-39-5031 TCGA-39-5034 TCGA-39-5035 TCGA-39-5036 
       24.33         1.94        27.35        36.39        15.58        35.64 
TCGA-39-5039 TCGA-39-5040 TCGA-43-2576 TCGA-43-2578 TCGA-43-2581 TCGA-43-3394 
       17.88        17.06        24.59        22.49        13.12        27.02 
TCGA-43-3920 TCGA-43-5670 TCGA-43-6143 TCGA-43-6647 TCGA-43-6770 TCGA-43-6771 
       11.74        18.05        12.36        12.46        10.19         5.42 
TCGA-43-6773 TCGA-43-7657 TCGA-43-7658 TCGA-43-8115 TCGA-43-8118 TCGA-46-6026 
        3.78         1.58        66.51         6.64         2.93        13.87 
TCGA-51-4079 TCGA-51-4081 TCGA-52-7622 TCGA-52-7809 TCGA-52-7811 TCGA-52-7812 
        0.39        29.95        17.79         5.42         8.75        27.45 
TCGA-56-1622 TCGA-56-5897 TCGA-56-6545 TCGA-56-6546 TCGA-56-7223 TCGA-56-7579 
       28.93         0.10         2.04         1.02         0.99         1.45 
TCGA-56-7582 TCGA-56-7730 TCGA-56-7822 TCGA-56-8503 TCGA-56-8504 TCGA-56-8622 
        0.85         0.20         0.03         1.35         5.82         1.78 
TCGA-56-8624 TCGA-56-8626 TCGA-56-8628 TCGA-56-8629 TCGA-56-A49D TCGA-56-A4BX 
        1.18         0.56         0.53         1.12         0.99         1.51 
TCGA-56-A4BY TCGA-56-A4ZJ TCGA-56-A5DS TCGA-58-8386 TCGA-58-8387 TCGA-58-8393 
        0.99         1.02         0.26         0.03        13.25         0.66 
TCGA-58-A46K TCGA-58-A46L TCGA-58-A46N TCGA-60-2695 TCGA-60-2697 TCGA-60-2698 
       34.36        36.59        17.72        21.07        12.23        10.22 
TCGA-60-2703 TCGA-60-2704 TCGA-60-2706 TCGA-60-2707 TCGA-60-2708 TCGA-60-2709 
       96.82        37.94        92.71        21.70        80.42        49.48 
TCGA-60-2710 TCGA-60-2711 TCGA-60-2714 TCGA-60-2715 TCGA-60-2716 TCGA-60-2719 
       66.51        41.39        50.33        35.34        48.49        42.61 
TCGA-60-2720 TCGA-60-2722 TCGA-60-2723 TCGA-60-2724 TCGA-60-2725 TCGA-66-2734 
        3.16        29.85        35.90        23.57        26.79        43.10 
TCGA-66-2737 TCGA-66-2742 TCGA-66-2744 TCGA-66-2753 TCGA-66-2755 TCGA-66-2756 
        2.01        21.07         0.99         1.02         0.92         0.99 
TCGA-66-2758 TCGA-66-2759 TCGA-66-2765 TCGA-66-2766 TCGA-66-2767 TCGA-66-2768 
       20.98        25.02         2.01         1.02         2.01         2.01 
TCGA-66-2769 TCGA-66-2770 TCGA-66-2771 TCGA-66-2777 TCGA-66-2778 TCGA-66-2781 
        7.07        23.01        19.00         2.01        19.00         3.98 
TCGA-66-2783 TCGA-66-2785 TCGA-66-2787 TCGA-66-2788 TCGA-66-2791 TCGA-66-2792 
       24.95         1.94        40.01        22.98         5.03        30.02 
TCGA-66-2793 TCGA-66-2794 TCGA-66-2800 TCGA-68-7757 TCGA-68-8250 TCGA-68-8251 
       10.06        54.08        49.05         6.94         8.02         3.12 
TCGA-77-6842 TCGA-77-6844 TCGA-77-7138 TCGA-77-7139 TCGA-77-7140 TCGA-77-7141 
       29.56        75.09        11.18        89.95        20.78         0.49 
TCGA-77-7335 TCGA-77-7337 TCGA-77-7338 TCGA-77-7463 TCGA-77-7465 TCGA-77-8007 
       70.09       106.95         0.16        46.78        15.75         6.51 
TCGA-77-8008 TCGA-77-8009 TCGA-77-8130 TCGA-77-8139 TCGA-77-8148 TCGA-77-8156 
       86.76        53.95        82.92       104.09         9.63         0.33 
TCGA-77-A5GB TCGA-77-A5GH TCGA-85-6560 TCGA-85-6561 TCGA-85-6798 TCGA-85-7696 
       30.81        23.44         0.36         0.79         1.12         0.59 
TCGA-85-7697 TCGA-85-7698 TCGA-85-7843 TCGA-85-7844 TCGA-85-7950 TCGA-85-8048 
        0.33         1.61         1.15         1.25         1.97         0.85 
TCGA-85-8049 TCGA-85-8052 TCGA-85-8070 TCGA-85-8072 TCGA-85-8276 TCGA-85-8277 
        1.97         0.53         1.41         1.18         0.43         0.36 
TCGA-85-8287 TCGA-85-8350 TCGA-85-8351 TCGA-85-8353 TCGA-85-8354 TCGA-85-8355 
        1.45         1.97         1.81         1.78         2.01         0.66 
TCGA-85-8481 TCGA-85-8582 TCGA-85-8664 TCGA-85-8666 TCGA-85-A4CL TCGA-85-A50M 
        0.66         0.13         0.10         0.46         0.46         0.62 
TCGA-85-A513 TCGA-85-A53L TCGA-90-6837 TCGA-90-7767 TCGA-90-7769 TCGA-90-7964 
        0.79         0.43        24.89         2.93         0.59         3.29 
TCGA-90-A4ED TCGA-92-7340 TCGA-92-7341 TCGA-92-8064 TCGA-92-8065 TCGA-94-7033 
        8.02         2.70         3.48         5.26         2.27         2.86 
TCGA-94-7557 TCGA-94-7943 TCGA-96-7545 TCGA-96-8169 TCGA-96-8170 TCGA-98-7454 
        0.16         4.70        44.15         6.18         6.90         8.42 
TCGA-98-8020 TCGA-98-8021 TCGA-98-8023 TCGA-J1-A4AH TCGA-L3-A4E7 TCGA-L3-A524 
        2.73        13.58        10.13         7.30         1.15        14.76 
TCGA-MF-A522 TCGA-NC-A5HE 
        3.02        56.61 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.03              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
           122.43            173.79 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            11.47             11.95 
[1] "0.0 - 122.4 (11.5)" "0.0 - 173.8 (11.9)"
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NC-A5HI 
  "XQ LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NC-A5HI 
  "XQ LOSS MUTATED" 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-18-4721 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-1070        TCGA-21-1071 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1072        TCGA-21-1075        TCGA-21-1076        TCGA-21-1077 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5783 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-0940        TCGA-22-0944        TCGA-22-1000        TCGA-22-1002 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1005        TCGA-22-1011        TCGA-22-1012        TCGA-22-1016 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-1017        TCGA-22-4591        TCGA-22-4593        TCGA-22-4594 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4595        TCGA-22-4596        TCGA-22-4599        TCGA-22-4601 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-4604        TCGA-22-4605        TCGA-22-4607        TCGA-22-4609 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-22-5471        TCGA-22-5472        TCGA-22-5473 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-22-5474        TCGA-22-5477        TCGA-22-5478        TCGA-22-5479 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5480        TCGA-22-5481        TCGA-22-5482        TCGA-22-5483 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4533        TCGA-33-4538        TCGA-33-4547 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4566        TCGA-33-4582        TCGA-33-4583        TCGA-33-4586 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-33-4587        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5231        TCGA-34-5232 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5234        TCGA-34-5236        TCGA-34-5239        TCGA-34-5240 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-34-5241        TCGA-34-5927        TCGA-34-5928        TCGA-34-5929 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-34-7107        TCGA-37-3783        TCGA-37-3789        TCGA-37-3792 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4130        TCGA-37-4132        TCGA-37-4133 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-37-4135        TCGA-37-4141        TCGA-37-5819        TCGA-39-5011 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5016        TCGA-39-5019        TCGA-39-5021        TCGA-39-5022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5024        TCGA-39-5027        TCGA-39-5028        TCGA-39-5029 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-39-5030        TCGA-39-5031        TCGA-39-5034        TCGA-39-5035 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-39-5039        TCGA-39-5040 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-2576        TCGA-43-2578        TCGA-43-2581        TCGA-43-3394 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-3920        TCGA-43-5668        TCGA-43-5670        TCGA-43-6143 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-6647        TCGA-43-6770        TCGA-43-6771        TCGA-43-6773 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7657        TCGA-43-7658        TCGA-43-8115 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-43-8116        TCGA-43-8118        TCGA-46-3768        TCGA-46-6025 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-46-6026        TCGA-51-4079        TCGA-51-4080        TCGA-51-4081 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7622        TCGA-52-7809        TCGA-52-7810        TCGA-52-7811 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-52-7812        TCGA-56-1622        TCGA-56-5897        TCGA-56-6545 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-6546        TCGA-56-7221        TCGA-56-7222        TCGA-56-7223 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-56-7579        TCGA-56-7580        TCGA-56-7582        TCGA-56-7730 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-7822        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BX        TCGA-56-A4BY 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DS        TCGA-58-8386 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-8387        TCGA-58-8388        TCGA-58-8390        TCGA-58-8391 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-58-8392        TCGA-58-8393        TCGA-58-A46K        TCGA-58-A46L 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2695        TCGA-60-2696        TCGA-60-2697 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2698        TCGA-60-2703        TCGA-60-2704        TCGA-60-2706 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2707        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-60-2715        TCGA-60-2716        TCGA-60-2719        TCGA-60-2720 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2721        TCGA-60-2722        TCGA-60-2723        TCGA-60-2724 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-60-2725        TCGA-60-2726        TCGA-66-2727        TCGA-66-2734 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-66-2800        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-77-6842        TCGA-77-6843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8130 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-77-8139        TCGA-77-8144        TCGA-77-8148        TCGA-77-8153 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-77-8154        TCGA-77-8156        TCGA-77-A5GB        TCGA-77-A5GH 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7843 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8664        TCGA-85-8666 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A4CL        TCGA-85-A4QR        TCGA-85-A50M        TCGA-85-A513 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-85-A53L        TCGA-90-6837        TCGA-90-7766        TCGA-90-7767 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-90-7769        TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-96-7544        TCGA-96-7545        TCGA-96-8169        TCGA-96-8170 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-98-8023        TCGA-J1-A4AH        TCGA-L3-A4E7        TCGA-L3-A524 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HE        TCGA-NC-A5HG 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-NC-A5HI 
  "XQ LOSS MUTATED" 
[1] "hr=" "1.2"
D80V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE II STAGE IIA STAGE IIB
  XQ LOSS MUTATED         0       18       29        0        12        14
  XQ LOSS WILD-TYPE       1       49      102        1        33        51
                   vv
clus                STAGE IIIA STAGE IIIB STAGE IV
  XQ LOSS MUTATED           13          6        0
  XQ LOSS WILD-TYPE         40         14        5
D80V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED    27  48  12   7
  XQ LOSS WILD-TYPE  65 191  30  11
D80V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1              27                65
  T2              48               191
  T3              12                30
  T4               7                11
                   vv
clus                 N0  N1  N2  N3
  XQ LOSS MUTATED    59  29   5   1
  XQ LOSS WILD-TYPE 186  74  28   4
D80V5, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0              59               186
  N1              29                74
  N2               5                28
  N3               1                 4
                   vv
clus                 M0  M1  MX
  XQ LOSS MUTATED    81   0  10
  XQ LOSS WILD-TYPE 252   5  37
D80V6, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  M0              81               252
  M1               0                 5
  MX              10                37
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    27  67
  XQ LOSS WILD-TYPE  71 226
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     27   67
  XQ LOSS WILD-TYPE   71  226
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              27                71
  MALE                67               226
D80V8, continuous
                   vv
clus                LUNG BASALOID SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                       3
  XQ LOSS WILD-TYPE                                     9
                   vv
clus                LUNG PAPILLARY SQUAMOUS CELL CARICNOMA
  XQ LOSS MUTATED                                        1
  XQ LOSS WILD-TYPE                                      4
                   vv
clus                LUNG SMALL CELL SQUAMOUS CELL CARCINOMA
  XQ LOSS MUTATED                                         1
  XQ LOSS WILD-TYPE                                       0
                   vv
clus                LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ LOSS MUTATED                                                            89
  XQ LOSS WILD-TYPE                                                         284
D80V9, multiclass
                                                             clus
vv                                                            XQ LOSS MUTATED
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                     3
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                    1
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                   1
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)              89
                                                             clus
vv                                                            XQ LOSS WILD-TYPE
  LUNG BASALOID SQUAMOUS CELL CARCINOMA                                       9
  LUNG PAPILLARY SQUAMOUS CELL CARICNOMA                                      4
  LUNG SMALL CELL SQUAMOUS CELL CARCINOMA                                     0
  LUNG SQUAMOUS CELL CARCINOMA- NOT OTHERWISE SPECIFIED (NOS)               284
D80V10, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED     3  91
  XQ LOSS WILD-TYPE   9 288
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      3   91
  XQ LOSS WILD-TYPE    9  288
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                3                 9
  YES              91               288
D80V11, continuous
D80V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ LOSS MUTATED    78   2   0   3
  XQ LOSS WILD-TYPE 239   5   4  15
D80V13, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  R0              78               239
  R1               2                 5
  R2               0                 4
  RX               3                15
> q(save="no")
