
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/Correlate_Cluster_cnvarms_onlysig/broadinstitute.org/cancer.genome.analysis/00508/6/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/cnvarms2cluster/LUSC-TP/4431269/broad_values_by_arm.mutsig.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/LUSC-TP/4470536/LUSC-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUSC-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUSC-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=493, in cluster file=489, common to both=489
[1]  80 489
[1] "1p gain"
[1] 3
      1P GAIN CNV 1P GAIN WILD-TYPE 
               25               464 
      1P GAIN CNV 1P GAIN WILD-TYPE 
               25               464 
[1] "1q gain"
[1] 3
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              104               385 
      1Q GAIN CNV 1Q GAIN WILD-TYPE 
              104               385 
[1] "2p gain"
[1] 3
      2P GAIN CNV 2P GAIN WILD-TYPE 
              120               369 
      2P GAIN CNV 2P GAIN WILD-TYPE 
              120               369 
[1] "2q gain"
[1] 3
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               48               441 
      2Q GAIN CNV 2Q GAIN WILD-TYPE 
               48               441 
[1] "3p gain"
[1] 3
      3P GAIN CNV 3P GAIN WILD-TYPE 
               54               435 
      3P GAIN CNV 3P GAIN WILD-TYPE 
               54               435 
[1] "3q gain"
[1] 3
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              217               272 
      3Q GAIN CNV 3Q GAIN WILD-TYPE 
              217               272 
[1] "4p gain"
[1] 3
      4P GAIN CNV 4P GAIN WILD-TYPE 
               16               473 
      4P GAIN CNV 4P GAIN WILD-TYPE 
               16               473 
[1] "4q gain"
[1] 3
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                7               482 
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                7               482 
[1] "5p gain"
[1] 3
      5P GAIN CNV 5P GAIN WILD-TYPE 
              225               264 
      5P GAIN CNV 5P GAIN WILD-TYPE 
              225               264 
[1] "5q gain"
[1] 3
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               51               438 
      5Q GAIN CNV 5Q GAIN WILD-TYPE 
               51               438 
[1] "6p gain"
[1] 3
      6P GAIN CNV 6P GAIN WILD-TYPE 
               41               448 
      6P GAIN CNV 6P GAIN WILD-TYPE 
               41               448 
[1] "6q gain"
[1] 3
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               30               459 
      6Q GAIN CNV 6Q GAIN WILD-TYPE 
               30               459 
[1] "7p gain"
[1] 3
      7P GAIN CNV 7P GAIN WILD-TYPE 
              139               350 
      7P GAIN CNV 7P GAIN WILD-TYPE 
              139               350 
[1] "7q gain"
[1] 3
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              121               368 
      7Q GAIN CNV 7Q GAIN WILD-TYPE 
              121               368 
[1] "8p gain"
[1] 3
      8P GAIN CNV 8P GAIN WILD-TYPE 
               62               427 
      8P GAIN CNV 8P GAIN WILD-TYPE 
               62               427 
[1] "8q gain"
[1] 3
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              143               346 
      8Q GAIN CNV 8Q GAIN WILD-TYPE 
              143               346 
[1] "9p gain"
[1] 3
      9P GAIN CNV 9P GAIN WILD-TYPE 
               26               463 
      9P GAIN CNV 9P GAIN WILD-TYPE 
               26               463 
[1] "9q gain"
[1] 3
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               41               448 
      9Q GAIN CNV 9Q GAIN WILD-TYPE 
               41               448 
[1] "10p gain"
[1] 3
      10P GAIN CNV 10P GAIN WILD-TYPE 
                27                462 
      10P GAIN CNV 10P GAIN WILD-TYPE 
                27                462 
[1] "10q gain"
[1] 3
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 8                481 
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 8                481 
[1] "11p gain"
[1] 3
      11P GAIN CNV 11P GAIN WILD-TYPE 
                26                463 
      11P GAIN CNV 11P GAIN WILD-TYPE 
                26                463 
[1] "11q gain"
[1] 3
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                28                461 
      11Q GAIN CNV 11Q GAIN WILD-TYPE 
                28                461 
[1] "12p gain"
[1] 3
      12P GAIN CNV 12P GAIN WILD-TYPE 
               142                347 
      12P GAIN CNV 12P GAIN WILD-TYPE 
               142                347 
[1] "12q gain"
[1] 3
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                61                428 
      12Q GAIN CNV 12Q GAIN WILD-TYPE 
                61                428 
[1] "13q gain"
[1] 3
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                13                476 
      13Q GAIN CNV 13Q GAIN WILD-TYPE 
                13                476 
[1] "14q gain"
[1] 3
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                58                431 
      14Q GAIN CNV 14Q GAIN WILD-TYPE 
                58                431 
[1] "15q gain"
[1] 3
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                45                444 
      15Q GAIN CNV 15Q GAIN WILD-TYPE 
                45                444 
[1] "16p gain"
[1] 3
      16P GAIN CNV 16P GAIN WILD-TYPE 
                24                465 
      16P GAIN CNV 16P GAIN WILD-TYPE 
                24                465 
[1] "16q gain"
[1] 3
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                26                463 
      16Q GAIN CNV 16Q GAIN WILD-TYPE 
                26                463 
[1] "17p gain"
[1] 3
      17P GAIN CNV 17P GAIN WILD-TYPE 
                19                470 
      17P GAIN CNV 17P GAIN WILD-TYPE 
                19                470 
[1] "17q gain"
[1] 3
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                65                424 
      17Q GAIN CNV 17Q GAIN WILD-TYPE 
                65                424 
[1] "18p gain"
[1] 3
      18P GAIN CNV 18P GAIN WILD-TYPE 
                83                406 
      18P GAIN CNV 18P GAIN WILD-TYPE 
                83                406 
[1] "18q gain"
[1] 3
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                47                442 
      18Q GAIN CNV 18Q GAIN WILD-TYPE 
                47                442 
[1] "19p gain"
[1] 3
      19P GAIN CNV 19P GAIN WILD-TYPE 
                51                438 
      19P GAIN CNV 19P GAIN WILD-TYPE 
                51                438 
[1] "19q gain"
[1] 3
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                72                417 
      19Q GAIN CNV 19Q GAIN WILD-TYPE 
                72                417 
[1] "20p gain"
[1] 3
      20P GAIN CNV 20P GAIN WILD-TYPE 
               141                348 
      20P GAIN CNV 20P GAIN WILD-TYPE 
               141                348 
[1] "20q gain"
[1] 3
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               130                359 
      20Q GAIN CNV 20Q GAIN WILD-TYPE 
               130                359 
[1] "21q gain"
[1] 3
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                22                467 
      21Q GAIN CNV 21Q GAIN WILD-TYPE 
                22                467 
[1] "22q gain"
[1] 3
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
               119                370 
      22Q GAIN CNV 22Q GAIN WILD-TYPE 
               119                370 
[1] "Xq gain"
[1] 3
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               17               472 
      XQ GAIN CNV XQ GAIN WILD-TYPE 
               17               472 
[1] "1p loss"
[1] 3
      1P LOSS CNV 1P LOSS WILD-TYPE 
               77               412 
      1P LOSS CNV 1P LOSS WILD-TYPE 
               77               412 
[1] "1q loss"
[1] 3
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               18               471 
      1Q LOSS CNV 1Q LOSS WILD-TYPE 
               18               471 
[1] "2p loss"
[1] 3
      2P LOSS CNV 2P LOSS WILD-TYPE 
                6               483 
      2P LOSS CNV 2P LOSS WILD-TYPE 
                6               483 
[1] "2q loss"
[1] 3
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               16               473 
      2Q LOSS CNV 2Q LOSS WILD-TYPE 
               16               473 
[1] "3p loss"
[1] 3
      3P LOSS CNV 3P LOSS WILD-TYPE 
              201               288 
      3P LOSS CNV 3P LOSS WILD-TYPE 
              201               288 
[1] "3q loss"
[1] 3
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               34               455 
      3Q LOSS CNV 3Q LOSS WILD-TYPE 
               34               455 
[1] "4p loss"
[1] 3
      4P LOSS CNV 4P LOSS WILD-TYPE 
              200               289 
      4P LOSS CNV 4P LOSS WILD-TYPE 
              200               289 
[1] "4q loss"
[1] 3
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              174               315 
      4Q LOSS CNV 4Q LOSS WILD-TYPE 
              174               315 
[1] "5p loss"
[1] 3
      5P LOSS CNV 5P LOSS WILD-TYPE 
               36               453 
      5P LOSS CNV 5P LOSS WILD-TYPE 
               36               453 
[1] "5q loss"
[1] 3
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
              177               312 
      5Q LOSS CNV 5Q LOSS WILD-TYPE 
              177               312 
[1] "6p loss"
[1] 3
      6P LOSS CNV 6P LOSS WILD-TYPE 
               46               443 
      6P LOSS CNV 6P LOSS WILD-TYPE 
               46               443 
[1] "6q loss"
[1] 3
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               52               437 
      6Q LOSS CNV 6Q LOSS WILD-TYPE 
               52               437 
[1] "7p loss"
[1] 3
      7P LOSS CNV 7P LOSS WILD-TYPE 
               30               459 
      7P LOSS CNV 7P LOSS WILD-TYPE 
               30               459 
[1] "7q loss"
[1] 3
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               15               474 
      7Q LOSS CNV 7Q LOSS WILD-TYPE 
               15               474 
[1] "8p loss"
[1] 3
      8P LOSS CNV 8P LOSS WILD-TYPE 
              153               336 
      8P LOSS CNV 8P LOSS WILD-TYPE 
              153               336 
[1] "8q loss"
[1] 3
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               20               469 
      8Q LOSS CNV 8Q LOSS WILD-TYPE 
               20               469 
[1] "9p loss"
[1] 3
      9P LOSS CNV 9P LOSS WILD-TYPE 
              193               296 
      9P LOSS CNV 9P LOSS WILD-TYPE 
              193               296 
[1] "9q loss"
[1] 3
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              130               359 
      9Q LOSS CNV 9Q LOSS WILD-TYPE 
              130               359 
[1] "10p loss"
[1] 3
      10P LOSS CNV 10P LOSS WILD-TYPE 
               110                379 
      10P LOSS CNV 10P LOSS WILD-TYPE 
               110                379 
[1] "10q loss"
[1] 3
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
               115                374 
      10Q LOSS CNV 10Q LOSS WILD-TYPE 
               115                374 
[1] "11p loss"
[1] 3
      11P LOSS CNV 11P LOSS WILD-TYPE 
                80                409 
      11P LOSS CNV 11P LOSS WILD-TYPE 
                80                409 
[1] "11q loss"
[1] 3
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                59                430 
      11Q LOSS CNV 11Q LOSS WILD-TYPE 
                59                430 
[1] "12p loss"
[1] 3
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 9                480 
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 9                480 
[1] "12q loss"
[1] 3
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                14                475 
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                14                475 
[1] "13q loss"
[1] 3
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               182                307 
      13Q LOSS CNV 13Q LOSS WILD-TYPE 
               182                307 
[1] "14q loss"
[1] 3
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                86                403 
      14Q LOSS CNV 14Q LOSS WILD-TYPE 
                86                403 
[1] "15q loss"
[1] 3
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                61                428 
      15Q LOSS CNV 15Q LOSS WILD-TYPE 
                61                428 
[1] "16p loss"
[1] 3
      16P LOSS CNV 16P LOSS WILD-TYPE 
                73                416 
      16P LOSS CNV 16P LOSS WILD-TYPE 
                73                416 
[1] "16q loss"
[1] 3
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                95                394 
      16Q LOSS CNV 16Q LOSS WILD-TYPE 
                95                394 
[1] "17p loss"
[1] 3
      17P LOSS CNV 17P LOSS WILD-TYPE 
               179                310 
      17P LOSS CNV 17P LOSS WILD-TYPE 
               179                310 
[1] "17q loss"
[1] 3
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                32                457 
      17Q LOSS CNV 17Q LOSS WILD-TYPE 
                32                457 
[1] "18p loss"
[1] 3
      18P LOSS CNV 18P LOSS WILD-TYPE 
                57                432 
      18P LOSS CNV 18P LOSS WILD-TYPE 
                57                432 
[1] "18q loss"
[1] 3
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                94                395 
      18Q LOSS CNV 18Q LOSS WILD-TYPE 
                94                395 
[1] "19p loss"
[1] 3
      19P LOSS CNV 19P LOSS WILD-TYPE 
                76                413 
      19P LOSS CNV 19P LOSS WILD-TYPE 
                76                413 
[1] "19q loss"
[1] 3
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                49                440 
      19Q LOSS CNV 19Q LOSS WILD-TYPE 
                49                440 
[1] "20p loss"
[1] 3
      20P LOSS CNV 20P LOSS WILD-TYPE 
                20                469 
      20P LOSS CNV 20P LOSS WILD-TYPE 
                20                469 
[1] "20q loss"
[1] 3
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                24                465 
      20Q LOSS CNV 20Q LOSS WILD-TYPE 
                24                465 
[1] "21q loss"
[1] 3
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
               151                338 
      21Q LOSS CNV 21Q LOSS WILD-TYPE 
               151                338 
[1] "22q loss"
[1] 3
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                48                441 
      22Q LOSS CNV 22Q LOSS WILD-TYPE 
                48                441 
[1] "Xq loss"
[1] 3
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               26               463 
      XQ LOSS CNV XQ LOSS WILD-TYPE 
               26               463 
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 489 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 489 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1p gain
D1V1, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           4                38
  CLUS_2           2                50
  CLUS_3           2                30
  CLUS_4           3                25
D1V2, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           2                20
  CLUS_2           2                54
  CLUS_3           2                21
  CLUS_4           5                48
D1V3, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           4               190
  CLUS_2          13               149
  CLUS_3           8               125
D1V4, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           3               139
  CLUS_2           8               106
  CLUS_3           5                94
D1V5, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           3                57
  CLUS_2           2                71
  CLUS_3           1                60
D1V6, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           4                54
  CLUS_2           0                47
  CLUS_3           2                47
  CLUS_4           0                40
D1V7, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           4               114
  CLUS_2           7               136
  CLUS_3          11               131
  CLUS_4           1                74
D1V8, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1          10                83
  CLUS_2           7               133
  CLUS_3           6               239
D1V9, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           9               136
  CLUS_2           7               123
  CLUS_3           3               121
  CLUS_4           4                60
D1V10, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           4                67
  CLUS_2           7               156
  CLUS_3          12               217
D1V11, multiclass
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           8               117
  CLUS_2           2               109
  CLUS_3           4                87
D1V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN CNV          5    9
  1P GAIN WILD-TYPE  172  141
        clus
vv       1P GAIN CNV 1P GAIN WILD-TYPE
  CLUS_1           5               172
  CLUS_2           9               141

Clustering(2) Variable = 1q gain
D2V1, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           8                34
  CLUS_2          15                37
  CLUS_3           5                27
  CLUS_4           5                23
D2V2, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1           3                19
  CLUS_2          16                40
  CLUS_3           4                19
  CLUS_4          10                43
D2V3, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          26               168
  CLUS_2          58               104
  CLUS_3          20               113
D2V4, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          16               126
  CLUS_2          41                73
  CLUS_3          20                79
D2V5, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          13                47
  CLUS_2          11                62
  CLUS_3          11                50
D2V6, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          14                44
  CLUS_2           7                40
  CLUS_3           8                41
  CLUS_4           6                34
D2V7, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          13               105
  CLUS_2          48                95
  CLUS_3          31               111
  CLUS_4           8                67
D2V8, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          23                70
  CLUS_2          47                93
  CLUS_3          30               215
D2V9, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          31               114
  CLUS_2          30               100
  CLUS_3          14               110
  CLUS_4          24                40
D2V10, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          29                42
  CLUS_2          27               136
  CLUS_3          43               186
D2V11, multiclass
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          36                89
  CLUS_2          14                97
  CLUS_3          19                72
D2V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN CNV         26   43
  1Q GAIN WILD-TYPE  151  107
        clus
vv       1Q GAIN CNV 1Q GAIN WILD-TYPE
  CLUS_1          26               151
  CLUS_2          43               107

Clustering(3) Variable = 2p gain
D3V1, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           7                35
  CLUS_2          19                33
  CLUS_3           3                29
  CLUS_4           6                22
D3V2, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1           2                20
  CLUS_2          20                36
  CLUS_3           5                18
  CLUS_4           8                45
D3V3, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          16               178
  CLUS_2          74                88
  CLUS_3          30               103
D3V4, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          18               124
  CLUS_2          52                62
  CLUS_3          22                77
D3V5, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          19                41
  CLUS_2          11                62
  CLUS_3          16                45
D3V6, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          19                39
  CLUS_2          11                36
  CLUS_3          10                39
  CLUS_4           6                34
D3V7, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          14               104
  CLUS_2          59                84
  CLUS_3          36               106
  CLUS_4           6                69
D3V8, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          20                73
  CLUS_2          55                85
  CLUS_3          40               205
D3V9, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          32               113
  CLUS_2          47                83
  CLUS_3          16               108
  CLUS_4          21                43
D3V10, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          25                46
  CLUS_2          49               114
  CLUS_3          42               187
D3V11, multiclass
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          49                76
  CLUS_2          15                96
  CLUS_3          20                71
D3V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN CNV         27   57
  2P GAIN WILD-TYPE  150   93
        clus
vv       2P GAIN CNV 2P GAIN WILD-TYPE
  CLUS_1          27               150
  CLUS_2          57                93

Clustering(4) Variable = 2q gain
D4V1, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           3                39
  CLUS_2          10                42
  CLUS_3           4                28
  CLUS_4           2                26
D4V2, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           3                19
  CLUS_2          11                45
  CLUS_3           1                22
  CLUS_4           4                49
D4V3, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           6               188
  CLUS_2          31               131
  CLUS_3          11               122
D4V4, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           5               137
  CLUS_2          20                94
  CLUS_3           9                90
D4V5, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          10                50
  CLUS_2           5                68
  CLUS_3           6                55
D4V6, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          10                48
  CLUS_2           3                44
  CLUS_3           4                45
  CLUS_4           4                36
D4V7, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           4               114
  CLUS_2          26               117
  CLUS_3          13               129
  CLUS_4           1                74
D4V8, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           8                85
  CLUS_2          24               116
  CLUS_3          12               233
D4V9, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          15               130
  CLUS_2          16               114
  CLUS_3           6               118
  CLUS_4           9                55
D4V10, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          11                60
  CLUS_2          19               144
  CLUS_3          16               213
D4V11, multiclass
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1          21               104
  CLUS_2           4               107
  CLUS_3           4                87
D4V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN CNV          8   21
  2Q GAIN WILD-TYPE  169  129
        clus
vv       2Q GAIN CNV 2Q GAIN WILD-TYPE
  CLUS_1           8               169
  CLUS_2          21               129

Clustering(5) Variable = 3p gain
D5V1, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           4                38
  CLUS_2          10                42
  CLUS_3           2                30
  CLUS_4           3                25
D5V2, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           2                20
  CLUS_2          10                46
  CLUS_3           2                21
  CLUS_4           5                48
D5V3, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          10               184
  CLUS_2          27               135
  CLUS_3          17               116
D5V4, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          10               132
  CLUS_2          22                92
  CLUS_3           9                90
D5V5, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           6                54
  CLUS_2          11                62
  CLUS_3           9                52
D5V6, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           4                54
  CLUS_2           9                38
  CLUS_3           8                41
  CLUS_4           5                35
D5V7, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           8               110
  CLUS_2          24               119
  CLUS_3          15               127
  CLUS_4           6                69
D5V8, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           7                86
  CLUS_2          24               116
  CLUS_3          22               223
D5V9, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          16               129
  CLUS_2          14               116
  CLUS_3          12               112
  CLUS_4           8                56
D5V10, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1           8                63
  CLUS_2          18               145
  CLUS_3          24               205
D5V11, multiclass
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          15               110
  CLUS_2           8               103
  CLUS_3          11                80
D5V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN CNV         20   14
  3P GAIN WILD-TYPE  157  136
        clus
vv       3P GAIN CNV 3P GAIN WILD-TYPE
  CLUS_1          20               157
  CLUS_2          14               136

Clustering(6) Variable = 3q gain
D6V1, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          21                21
  CLUS_2          27                25
  CLUS_3           9                23
  CLUS_4          16                12
D6V2, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1           9                13
  CLUS_2          29                27
  CLUS_3          12                11
  CLUS_4          23                30
D6V3, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          60               134
  CLUS_2          81                81
  CLUS_3          76                57
D6V4, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          50                92
  CLUS_2          57                57
  CLUS_3          51                48
D6V5, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          32                28
  CLUS_2          29                44
  CLUS_3          27                34
D6V6, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          27                31
  CLUS_2          25                22
  CLUS_3          22                27
  CLUS_4          14                26
D6V7, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          54                64
  CLUS_2          70                73
  CLUS_3          69                73
  CLUS_4          21                54
D6V8, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          53                40
  CLUS_2          69                71
  CLUS_3          92               153
D6V9, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          69                76
  CLUS_2          68                62
  CLUS_3          40                84
  CLUS_4          30                34
D6V10, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          30                41
  CLUS_2          78                85
  CLUS_3          99               130
D6V11, multiclass
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          61                64
  CLUS_2          46                65
  CLUS_3          35                56
D6V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN CNV         77   65
  3Q GAIN WILD-TYPE  100   85
        clus
vv       3Q GAIN CNV 3Q GAIN WILD-TYPE
  CLUS_1          77               100
  CLUS_2          65                85

Clustering(7) Variable = 4p gain
D7V1, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1                41
  CLUS_2           1                51
  CLUS_3           2                30
  CLUS_4           4                24
D7V2, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           2                20
  CLUS_2           1                55
  CLUS_3           1                22
  CLUS_4           4                49
D7V3, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           6               188
  CLUS_2           1               161
  CLUS_3           9               124
D7V4, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           4               138
  CLUS_2           0               114
  CLUS_3           4                95
D7V5, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           2                58
  CLUS_2           0                73
  CLUS_3           3                58
D7V6, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           3                55
  CLUS_2           1                46
  CLUS_3           0                49
  CLUS_4           1                39
D7V7, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1               117
  CLUS_2           1               142
  CLUS_3          10               132
  CLUS_4           4                71
D7V8, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           7                86
  CLUS_2           1               139
  CLUS_3           8               237
D7V9, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           4               141
  CLUS_2           4               126
  CLUS_3           5               119
  CLUS_4           1                63
D7V10, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           1                70
  CLUS_2           4               159
  CLUS_3           9               220
D7V11, multiclass
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           2               123
  CLUS_2           3               108
  CLUS_3           3                88
D7V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN CNV          7    1
  4P GAIN WILD-TYPE  170  149
        clus
vv       4P GAIN CNV 4P GAIN WILD-TYPE
  CLUS_1           7               170
  CLUS_2           1               149

Clustering(8) Variable = 4q gain
D8V1, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           1                41
  CLUS_2           2                50
  CLUS_3           1                31
  CLUS_4           1                27
D8V2, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0                22
  CLUS_2           2                54
  CLUS_3           0                23
  CLUS_4           3                50
D8V3, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           1               193
  CLUS_2           3               159
  CLUS_3           3               130
D8V4, multiclass
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                2               353 
       TCGA-18-3417        TCGA-18-4721        TCGA-18-5592        TCGA-18-5595 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5782        TCGA-21-5783        TCGA-21-5784        TCGA-21-5786 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5787        TCGA-21-A5DI        TCGA-22-4593        TCGA-22-4599 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4601        TCGA-22-4605        TCGA-22-4609        TCGA-22-4613 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5471        TCGA-22-5472        TCGA-22-5473        TCGA-22-5474 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5477        TCGA-22-5478        TCGA-22-5479        TCGA-22-5480 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5481        TCGA-22-5482        TCGA-22-5483        TCGA-22-5485 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5489        TCGA-22-5491        TCGA-22-5492        TCGA-33-4566 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4582        TCGA-33-4583        TCGA-33-4586        TCGA-33-4587 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4589        TCGA-33-6737        TCGA-33-6738        TCGA-33-A4WN 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-A5GW        TCGA-34-5231        TCGA-34-5232        TCGA-34-5234 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5236        TCGA-34-5239        TCGA-34-5240        TCGA-34-5241 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-8454        TCGA-34-8455        TCGA-34-A5IX        TCGA-37-5819 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-A5EL        TCGA-37-A5EN        TCGA-39-5011        TCGA-39-5016 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5019        TCGA-39-5021        TCGA-39-5022        TCGA-39-5024 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5027        TCGA-39-5028        TCGA-39-5029        TCGA-39-5030 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5031        TCGA-39-5034        TCGA-39-5035        TCGA-39-5036 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5037        TCGA-39-5039        TCGA-39-5040        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6647        TCGA-43-6770 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6771        TCGA-43-6773        TCGA-43-7656        TCGA-43-7657 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7658        TCGA-43-8115        TCGA-43-8116        TCGA-43-8118 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A474        TCGA-43-A475        TCGA-43-A56U        TCGA-43-A56V 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-46-6025        TCGA-46-6026        TCGA-52-7622        TCGA-52-7809 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7810        TCGA-52-7811        TCGA-52-7812        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7223        TCGA-56-7580        TCGA-56-7582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7730        TCGA-56-7731        TCGA-56-7822        TCGA-56-7823 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8082        TCGA-56-8083        TCGA-56-8201        TCGA-56-8304 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8305        TCGA-56-8307        TCGA-56-8308        TCGA-56-8309 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8503        TCGA-56-8504        TCGA-56-8622        TCGA-56-8623 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8624        TCGA-56-8625        TCGA-56-8626        TCGA-56-8628 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BW        TCGA-56-A4BX 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK        TCGA-56-A5DR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A5DS        TCGA-58-8386        TCGA-58-8387        TCGA-58-8388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8390        TCGA-58-8391        TCGA-58-8392        TCGA-58-8393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46J        TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2697        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-63-5128        TCGA-63-5131        TCGA-63-6202 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7020        TCGA-63-7021        TCGA-63-7022        TCGA-63-7023 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5M9        TCGA-63-A5MB        TCGA-63-A5MG        TCGA-63-A5MH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MI        TCGA-63-A5MJ        TCGA-63-A5ML        TCGA-63-A5MM 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MN        TCGA-63-A5MP        TCGA-63-A5MR        TCGA-63-A5MS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MT        TCGA-63-A5MU        TCGA-63-A5MV        TCGA-63-A5MW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MY        TCGA-68-7755        TCGA-68-7756        TCGA-68-7757 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-8250        TCGA-68-8251        TCGA-68-A59I        TCGA-68-A59J 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7138        TCGA-77-7139 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7140        TCGA-77-7141        TCGA-77-7142        TCGA-77-7335 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7337        TCGA-77-7338        TCGA-77-7463        TCGA-77-7465 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8007        TCGA-77-8008        TCGA-77-8009        TCGA-77-8128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8130        TCGA-77-8131        TCGA-77-8133        TCGA-77-8136 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8138        TCGA-77-8139        TCGA-77-8140        TCGA-77-8143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8144        TCGA-77-8145        TCGA-77-8148        TCGA-77-8150 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8153        TCGA-77-8154        TCGA-77-8156        TCGA-77-A5FZ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5G1        TCGA-77-A5G3        TCGA-77-A5G6        TCGA-77-A5G7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5G8        TCGA-77-A5GA        TCGA-77-A5GB        TCGA-77-A5GF 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5GH        TCGA-79-5596        TCGA-85-6175        TCGA-85-6560 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6561        TCGA-85-6798        TCGA-85-7696        TCGA-85-7697 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7698        TCGA-85-7699        TCGA-85-7710        TCGA-85-7843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7844        TCGA-85-7950        TCGA-85-8048        TCGA-85-8049 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8052        TCGA-85-8070        TCGA-85-8071        TCGA-85-8072 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8276        TCGA-85-8277        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8584        TCGA-85-8664 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4CN        TCGA-85-A4JB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4JC        TCGA-85-A4PA        TCGA-85-A4QQ        TCGA-85-A4QR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A50Z        TCGA-85-A510        TCGA-85-A511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A512        TCGA-85-A513        TCGA-85-A53L        TCGA-85-A5B5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-6837        TCGA-90-7766        TCGA-90-7767        TCGA-90-7769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE        TCGA-90-A59Q 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-8035        TCGA-94-8490        TCGA-94-8491        TCGA-94-A4VJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-A5I4        TCGA-94-A5I6        TCGA-96-7544        TCGA-96-7545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-98-A538        TCGA-98-A539        TCGA-98-A53A 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-A53B        TCGA-98-A53C        TCGA-98-A53D        TCGA-98-A53H 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-A53I        TCGA-98-A53J        TCGA-J1-A4AH        TCGA-L3-A4E7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HF        TCGA-NC-A5HG        TCGA-NC-A5HH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI        TCGA-NC-A5HJ        TCGA-NC-A5HK        TCGA-NC-A5HL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HM        TCGA-NC-A5HN        TCGA-NC-A5HO        TCGA-NC-A5HP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HQ        TCGA-NC-A5HR        TCGA-NC-A5HT        TCGA-NK-A5CR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NK-A5CT        TCGA-NK-A5CX        TCGA-NK-A5D1        TCGA-O2-A52N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-O2-A52Q        TCGA-O2-A52S        TCGA-O2-A52V        TCGA-O2-A52W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-O2-A5IB 
"4Q GAIN WILD-TYPE" 
D8V5, multiclass
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                1               193 
       TCGA-18-4721        TCGA-18-5592        TCGA-18-5595        TCGA-21-1070 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5784 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0940        TCGA-22-1000 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-4591        TCGA-22-4596        TCGA-22-4605 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4607        TCGA-22-4609        TCGA-22-5471        TCGA-22-5472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5477        TCGA-22-5478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5479        TCGA-22-5480        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4547        TCGA-33-4566        TCGA-33-4582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2604        TCGA-34-2605        TCGA-34-2608        TCGA-34-2609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5231        TCGA-34-5232        TCGA-34-5234        TCGA-34-5236 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3789        TCGA-37-3792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5011        TCGA-39-5016        TCGA-39-5019 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5034        TCGA-39-5035        TCGA-39-5037        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2578        TCGA-43-2581        TCGA-43-3394        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7658        TCGA-46-6025        TCGA-46-6026 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7810        TCGA-52-7811        TCGA-52-7812        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7730        TCGA-60-2695        TCGA-60-2696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-66-2727        TCGA-66-2737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2773        TCGA-66-2777 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2788        TCGA-66-2790        TCGA-66-2791 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7139        TCGA-77-7141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7142        TCGA-77-7335        TCGA-77-7337        TCGA-77-7338 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7463        TCGA-77-7465        TCGA-79-5596        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-92-7340 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-96-7544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454 
"4Q GAIN WILD-TYPE" 
D8V6, multiclass
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                1               193 
       TCGA-18-4721        TCGA-18-5592        TCGA-18-5595        TCGA-21-1070 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1078        TCGA-21-1079        TCGA-21-1080        TCGA-21-1081 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-1082        TCGA-21-1083        TCGA-21-5782        TCGA-21-5784 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5786        TCGA-21-5787        TCGA-22-0940        TCGA-22-1000 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-1011        TCGA-22-4591        TCGA-22-4596        TCGA-22-4605 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4607        TCGA-22-4609        TCGA-22-5471        TCGA-22-5472 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5473        TCGA-22-5474        TCGA-22-5477        TCGA-22-5478 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5479        TCGA-22-5480        TCGA-22-5482        TCGA-22-5483 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5485        TCGA-22-5489        TCGA-22-5491        TCGA-22-5492 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4532        TCGA-33-4547        TCGA-33-4566        TCGA-33-4582 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-4586        TCGA-33-4589        TCGA-33-6737        TCGA-33-6738 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-2604        TCGA-34-2605        TCGA-34-2608        TCGA-34-2609 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5231        TCGA-34-5232        TCGA-34-5234        TCGA-34-5236 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5239        TCGA-34-5241        TCGA-34-5927        TCGA-34-5928 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5929        TCGA-34-7107        TCGA-37-3789        TCGA-37-3792 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-4129        TCGA-37-4133        TCGA-37-4135        TCGA-37-4141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-5819        TCGA-39-5011        TCGA-39-5016        TCGA-39-5019 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5021        TCGA-39-5022        TCGA-39-5024        TCGA-39-5027 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5028        TCGA-39-5029        TCGA-39-5030        TCGA-39-5031 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5034        TCGA-39-5035        TCGA-39-5037        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-2578        TCGA-43-2581        TCGA-43-3394        TCGA-43-5668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5670        TCGA-43-6143        TCGA-43-6770        TCGA-43-6771 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7656        TCGA-43-7658        TCGA-46-6025        TCGA-46-6026 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7810        TCGA-52-7811        TCGA-52-7812        TCGA-56-5897 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-5898        TCGA-56-6545        TCGA-56-6546        TCGA-56-7221 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7222        TCGA-56-7730        TCGA-60-2695        TCGA-60-2696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2697        TCGA-60-2698        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2706        TCGA-60-2708        TCGA-60-2709        TCGA-60-2710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2711        TCGA-60-2712        TCGA-60-2713        TCGA-60-2714 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2716        TCGA-60-2719        TCGA-60-2720        TCGA-60-2721 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2724        TCGA-60-2725        TCGA-60-2726        TCGA-63-5128 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-5131        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7022        TCGA-63-7023        TCGA-66-2727        TCGA-66-2737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2766        TCGA-66-2767        TCGA-66-2768 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2769        TCGA-66-2770        TCGA-66-2773        TCGA-66-2777 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2781        TCGA-66-2782        TCGA-66-2783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2785        TCGA-66-2788        TCGA-66-2790        TCGA-66-2791 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-66-2794        TCGA-66-2795        TCGA-66-2800        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-70-6722        TCGA-70-6723        TCGA-77-6842        TCGA-77-6843 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6844        TCGA-77-6845        TCGA-77-7139        TCGA-77-7141 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7142        TCGA-77-7335        TCGA-77-7337        TCGA-77-7338 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7463        TCGA-77-7465        TCGA-79-5596        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-90-6837 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7766        TCGA-90-7767        TCGA-90-7769        TCGA-92-7340 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-7033        TCGA-94-7557        TCGA-94-7943        TCGA-96-7544 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454 
"4Q GAIN WILD-TYPE" 
D8V7, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           1               117
  CLUS_2           3               140
  CLUS_3           3               139
  CLUS_4           0                75
D8V8, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           3                90
  CLUS_2           4               136
  CLUS_3           0               245
D8V9, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           3               142
  CLUS_2           2               128
  CLUS_3           0               124
  CLUS_4           1                63
D8V10, multiclass
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           1                70
  CLUS_2           1               162
  CLUS_3           4               225
D8V11, multiclass
[1] "Remove cluster labels:" "4Q GAIN CNV"           
clus
      4Q GAIN CNV 4Q GAIN WILD-TYPE 
                2               325 
       TCGA-18-5592        TCGA-18-5595        TCGA-21-5782        TCGA-21-5783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-21-5784        TCGA-21-5786        TCGA-21-5787        TCGA-21-A5DI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-4593        TCGA-22-4605        TCGA-22-4609        TCGA-22-5471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5472        TCGA-22-5473        TCGA-22-5474        TCGA-22-5477 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5478        TCGA-22-5479        TCGA-22-5480        TCGA-22-5481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5482        TCGA-22-5483        TCGA-22-5485        TCGA-22-5489 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-22-5491        TCGA-22-5492        TCGA-33-4587        TCGA-33-6737 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-33-6738        TCGA-33-A4WN        TCGA-33-A5GW        TCGA-34-5231 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5232        TCGA-34-5234        TCGA-34-5236        TCGA-34-5239 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-5927        TCGA-34-5928        TCGA-34-5929        TCGA-34-7107 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-34-8454        TCGA-34-8455        TCGA-34-A5IX        TCGA-37-3783 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-37-5819        TCGA-37-A5EL        TCGA-37-A5EN        TCGA-39-5019 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-39-5022        TCGA-39-5024        TCGA-39-5027        TCGA-39-5040 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-5668        TCGA-43-5670        TCGA-43-6143        TCGA-43-6647 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-6770        TCGA-43-6771        TCGA-43-6773        TCGA-43-7656 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-7657        TCGA-43-7658        TCGA-43-8115        TCGA-43-8116 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-8118        TCGA-43-A474        TCGA-43-A475        TCGA-43-A56U 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-43-A56V        TCGA-46-6025        TCGA-46-6026        TCGA-52-7622 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-52-7809        TCGA-52-7810        TCGA-52-7811        TCGA-52-7812 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-5897        TCGA-56-5898        TCGA-56-6545        TCGA-56-6546 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7221        TCGA-56-7222        TCGA-56-7223        TCGA-56-7580 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7582        TCGA-56-7730        TCGA-56-7731        TCGA-56-7822 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-7823        TCGA-56-8082        TCGA-56-8083        TCGA-56-8201 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8304        TCGA-56-8305        TCGA-56-8307        TCGA-56-8308 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8309        TCGA-56-8503        TCGA-56-8504        TCGA-56-8622 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8623        TCGA-56-8624        TCGA-56-8625        TCGA-56-8626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-8628        TCGA-56-8629        TCGA-56-A49D        TCGA-56-A4BW 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A4BX        TCGA-56-A4BY        TCGA-56-A4ZJ        TCGA-56-A4ZK 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-56-A5DR        TCGA-58-8386        TCGA-58-8387        TCGA-58-8388 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-8390        TCGA-58-8391        TCGA-58-8392        TCGA-58-8393 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46J        TCGA-58-A46K        TCGA-58-A46L        TCGA-58-A46M 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-58-A46N        TCGA-60-2697        TCGA-60-2703        TCGA-60-2704 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-60-2709        TCGA-63-6202        TCGA-63-7020        TCGA-63-7021 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-7022        TCGA-63-A5M9        TCGA-63-A5MB        TCGA-63-A5MG 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MH        TCGA-63-A5MI        TCGA-63-A5MJ        TCGA-63-A5ML 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MM        TCGA-63-A5MN        TCGA-63-A5MP        TCGA-63-A5MR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MS        TCGA-63-A5MT        TCGA-63-A5MU        TCGA-63-A5MV 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-63-A5MW        TCGA-63-A5MY        TCGA-68-7755        TCGA-68-7756 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-7757        TCGA-68-8250        TCGA-68-8251        TCGA-68-A59I 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-68-A59J        TCGA-70-6722        TCGA-70-6723        TCGA-77-6842 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-6843        TCGA-77-6844        TCGA-77-6845        TCGA-77-7138 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7139        TCGA-77-7140        TCGA-77-7141        TCGA-77-7142 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7335        TCGA-77-7337        TCGA-77-7338        TCGA-77-7463 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-7465        TCGA-77-8007        TCGA-77-8008        TCGA-77-8009 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8128        TCGA-77-8130        TCGA-77-8131        TCGA-77-8133 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8136        TCGA-77-8138        TCGA-77-8139        TCGA-77-8140 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8143        TCGA-77-8144        TCGA-77-8145        TCGA-77-8148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-8150        TCGA-77-8153        TCGA-77-8154        TCGA-77-8156 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5FZ        TCGA-77-A5G1        TCGA-77-A5G3        TCGA-77-A5G6 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5G7        TCGA-77-A5G8        TCGA-77-A5GA        TCGA-77-A5GB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-77-A5GF        TCGA-77-A5GH        TCGA-79-5596        TCGA-85-6175 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-6560        TCGA-85-6561        TCGA-85-6798        TCGA-85-7696 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7697        TCGA-85-7698        TCGA-85-7699        TCGA-85-7710 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-7843        TCGA-85-7844        TCGA-85-7950        TCGA-85-8048 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8049        TCGA-85-8052        TCGA-85-8070        TCGA-85-8071 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8072        TCGA-85-8276        TCGA-85-8287        TCGA-85-8288 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8350        TCGA-85-8351        TCGA-85-8352        TCGA-85-8353 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8354        TCGA-85-8355        TCGA-85-8479        TCGA-85-8481 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8580        TCGA-85-8582        TCGA-85-8584        TCGA-85-8664 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-8666        TCGA-85-A4CL        TCGA-85-A4CN        TCGA-85-A4JB 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A4JC        TCGA-85-A4PA        TCGA-85-A4QQ        TCGA-85-A4QR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A50M        TCGA-85-A50Z        TCGA-85-A510        TCGA-85-A511 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-85-A512        TCGA-85-A513        TCGA-85-A53L        TCGA-85-A5B5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-6837        TCGA-90-7766        TCGA-90-7767        TCGA-90-7769 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-90-7964        TCGA-90-A4ED        TCGA-90-A4EE        TCGA-90-A59Q 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-7340        TCGA-92-7341        TCGA-92-8063        TCGA-92-8064 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-92-8065        TCGA-94-7033        TCGA-94-7557        TCGA-94-7943 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-8035        TCGA-94-8490        TCGA-94-8491        TCGA-94-A4VJ 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-94-A5I4        TCGA-94-A5I6        TCGA-96-7544        TCGA-96-7545 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-96-8169        TCGA-96-8170        TCGA-96-A4JK        TCGA-96-A4JL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-7454        TCGA-98-8020        TCGA-98-8021        TCGA-98-8022 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-8023        TCGA-98-A538        TCGA-98-A539        TCGA-98-A53A 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-A53B        TCGA-98-A53C        TCGA-98-A53D        TCGA-98-A53H 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-98-A53I        TCGA-98-A53J        TCGA-J1-A4AH        TCGA-L3-A4E7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L3-A524        TCGA-LA-A446        TCGA-MF-A522        TCGA-NC-A5HD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HE        TCGA-NC-A5HF        TCGA-NC-A5HG        TCGA-NC-A5HH 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HI        TCGA-NC-A5HJ        TCGA-NC-A5HK        TCGA-NC-A5HL 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HM        TCGA-NC-A5HN        TCGA-NC-A5HO        TCGA-NC-A5HP 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NC-A5HQ        TCGA-NC-A5HR        TCGA-NC-A5HT        TCGA-NK-A5CR 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-NK-A5CT        TCGA-NK-A5CX        TCGA-NK-A5D1        TCGA-O2-A52N 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-O2-A52Q        TCGA-O2-A52S        TCGA-O2-A52V        TCGA-O2-A52W 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-O2-A5IB 
"4Q GAIN WILD-TYPE" 
D8V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN CNV          0    2
  4Q GAIN WILD-TYPE  177  148
        clus
vv       4Q GAIN CNV 4Q GAIN WILD-TYPE
  CLUS_1           0               177
  CLUS_2           2               148

Clustering(9) Variable = 5p gain
D9V1, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          20                22
  CLUS_2          23                29
  CLUS_3          13                19
  CLUS_4          12                16
D9V2, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1           7                15
  CLUS_2          24                32
  CLUS_3          14                 9
  CLUS_4          23                30
D9V3, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          69               125
  CLUS_2          68                94
  CLUS_3          88                45
D9V4, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          64                78
  CLUS_2          50                64
  CLUS_3          56                43
D9V5, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          28                32
  CLUS_2          39                34
  CLUS_3          26                35
D9V6, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          30                28
  CLUS_2          18                29
  CLUS_3          26                23
  CLUS_4          19                21
D9V7, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          58                60
  CLUS_2          60                83
  CLUS_3          75                67
  CLUS_4          27                48
D9V8, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          47                46
  CLUS_2          58                82
  CLUS_3         115               130
D9V9, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          60                85
  CLUS_2          65                65
  CLUS_3          62                62
  CLUS_4          30                34
D9V10, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          32                39
  CLUS_2          85                78
  CLUS_3         100               129
D9V11, multiclass
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          64                61
  CLUS_2          59                52
  CLUS_3          32                59
D9V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN CNV         85   70
  5P GAIN WILD-TYPE   92   80
        clus
vv       5P GAIN CNV 5P GAIN WILD-TYPE
  CLUS_1          85                92
  CLUS_2          70                80

Clustering(10) Variable = 5q gain
D10V1, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           7                35
  CLUS_2           5                47
  CLUS_3           4                28
  CLUS_4           0                28
D10V2, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           0                22
  CLUS_2           5                51
  CLUS_3           3                20
  CLUS_4           8                45
D10V3, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          11               183
  CLUS_2          16               146
  CLUS_3          24               109
D10V4, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          13               129
  CLUS_2           9               105
  CLUS_3          15                84
D10V5, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           6                54
  CLUS_2          10                63
  CLUS_3           7                54
D10V6, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           7                51
  CLUS_2           4                43
  CLUS_3           7                42
  CLUS_4           5                35
D10V7, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          14               104
  CLUS_2          12               131
  CLUS_3          20               122
  CLUS_4           3                72
D10V8, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          11                82
  CLUS_2          11               129
  CLUS_3          27               218
D10V9, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          17               128
  CLUS_2          16               114
  CLUS_3          13               111
  CLUS_4           5                59
D10V10, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1           7                64
  CLUS_2          22               141
  CLUS_3          22               207
D10V11, multiclass
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          15               110
  CLUS_2          13                98
  CLUS_3           7                84
D10V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN CNV         18   17
  5Q GAIN WILD-TYPE  159  133
        clus
vv       5Q GAIN CNV 5Q GAIN WILD-TYPE
  CLUS_1          18               159
  CLUS_2          17               133

Clustering(11) Variable = 6p gain
D11V1, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           2                40
  CLUS_2           5                47
  CLUS_3           0                32
  CLUS_4           7                21
D11V2, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           4                18
  CLUS_2           6                50
  CLUS_3           1                22
  CLUS_4           3                50
D11V3, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           7               187
  CLUS_2          10               152
  CLUS_3          24               109
D11V4, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          13               129
  CLUS_2           5               109
  CLUS_3          10                89
D11V5, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           6                54
  CLUS_2           7                66
  CLUS_3           4                57
D11V6, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           5                53
  CLUS_2           4                43
  CLUS_3           7                42
  CLUS_4           1                39
D11V7, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           5               113
  CLUS_2           9               134
  CLUS_3          22               120
  CLUS_4           5                70
D11V8, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          12                81
  CLUS_2          10               130
  CLUS_3          19               226
D11V9, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          14               131
  CLUS_2          12               118
  CLUS_3           9               115
  CLUS_4           4                60
D11V10, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1           5                66
  CLUS_2          16               147
  CLUS_3          18               211
D11V11, multiclass
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          13               112
  CLUS_2           7               104
  CLUS_3           7                84
D11V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN CNV         15   12
  6P GAIN WILD-TYPE  162  138
        clus
vv       6P GAIN CNV 6P GAIN WILD-TYPE
  CLUS_1          15               162
  CLUS_2          12               138

Clustering(12) Variable = 6q gain
D12V1, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           3                39
  CLUS_2           1                51
  CLUS_3           0                32
  CLUS_4           4                24
D12V2, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           2                20
  CLUS_2           1                55
  CLUS_3           1                22
  CLUS_4           4                49
D12V3, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           3               191
  CLUS_2           7               155
  CLUS_3          20               113
D12V4, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           5               137
  CLUS_2           5               109
  CLUS_3          12                87
D12V5, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           3                57
  CLUS_2           5                68
  CLUS_3           2                59
D12V6, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           3                55
  CLUS_2           2                45
  CLUS_3           4                45
  CLUS_4           1                39
D12V7, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           6               112
  CLUS_2           4               139
  CLUS_3          16               126
  CLUS_4           3                72
D12V8, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1          10                83
  CLUS_2           5               135
  CLUS_3          14               231
D12V9, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1          10               135
  CLUS_2           9               121
  CLUS_3           5               119
  CLUS_4           5                59
D12V10, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           5                66
  CLUS_2          11               152
  CLUS_3          13               216
D12V11, multiclass
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1          13               112
  CLUS_2           3               108
  CLUS_3           6                85
D12V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN CNV          8   14
  6Q GAIN WILD-TYPE  169  136
        clus
vv       6Q GAIN CNV 6Q GAIN WILD-TYPE
  CLUS_1           8               169
  CLUS_2          14               136

Clustering(13) Variable = 7p gain
D13V1, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          10                32
  CLUS_2          19                33
  CLUS_3           7                25
  CLUS_4           9                19
D13V2, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1           6                16
  CLUS_2          21                35
  CLUS_3           4                19
  CLUS_4          14                39
D13V3, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          34               160
  CLUS_2          70                92
  CLUS_3          35                98
D13V4, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          24               118
  CLUS_2          49                65
  CLUS_3          28                71
D13V5, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          18                42
  CLUS_2          22                51
  CLUS_3          15                46
D13V6, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          16                42
  CLUS_2          13                34
  CLUS_3          15                34
  CLUS_4          11                29
D13V7, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          24                94
  CLUS_2          56                87
  CLUS_3          37               105
  CLUS_4          17                58
D13V8, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          21                72
  CLUS_2          56                84
  CLUS_3          57               188
D13V9, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          38               107
  CLUS_2          48                82
  CLUS_3          25                99
  CLUS_4          23                41
D13V10, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          26                45
  CLUS_2          48               115
  CLUS_3          60               169
D13V11, multiclass
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          54                71
  CLUS_2          23                88
  CLUS_3          17                74
D13V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN CNV         37   57
  7P GAIN WILD-TYPE  140   93
        clus
vv       7P GAIN CNV 7P GAIN WILD-TYPE
  CLUS_1          37               140
  CLUS_2          57                93

Clustering(14) Variable = 7q gain
D14V1, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          10                32
  CLUS_2          20                32
  CLUS_3           5                27
  CLUS_4           9                19
D14V2, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1           4                18
  CLUS_2          23                33
  CLUS_3           4                19
  CLUS_4          13                40
D14V3, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          20               174
  CLUS_2          73                89
  CLUS_3          28               105
D14V4, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          14               128
  CLUS_2          41                73
  CLUS_3          27                72
D14V5, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          18                42
  CLUS_2          20                53
  CLUS_3          14                47
D14V6, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          14                44
  CLUS_2          14                33
  CLUS_3          15                34
  CLUS_4           9                31
D14V7, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          21                97
  CLUS_2          57                86
  CLUS_3          28               114
  CLUS_4          11                64
D14V8, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          19                74
  CLUS_2          55                85
  CLUS_3          43               202
D14V9, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          37               108
  CLUS_2          41                89
  CLUS_3          16               108
  CLUS_4          23                41
D14V10, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          25                46
  CLUS_2          42               121
  CLUS_3          50               179
D14V11, multiclass
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          46                79
  CLUS_2          17                94
  CLUS_3          14                77
D14V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN CNV         27   50
  7Q GAIN WILD-TYPE  150  100
        clus
vv       7Q GAIN CNV 7Q GAIN WILD-TYPE
  CLUS_1          27               150
  CLUS_2          50               100

Clustering(15) Variable = 8p gain
D15V1, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           9                33
  CLUS_2           3                49
  CLUS_3           2                30
  CLUS_4           6                22
D15V2, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           5                17
  CLUS_2           3                53
  CLUS_3           5                18
  CLUS_4           7                46
D15V3, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          22               172
  CLUS_2          13               149
  CLUS_3          27               106
D15V4, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          19               123
  CLUS_2           9               105
  CLUS_3          16                83
D15V5, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          11                49
  CLUS_2           9                64
  CLUS_3          11                50
D15V6, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          13                45
  CLUS_2           5                42
  CLUS_3           6                43
  CLUS_4           7                33
D15V7, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          14               104
  CLUS_2          11               132
  CLUS_3          27               115
  CLUS_4           9                66
D15V8, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          22                71
  CLUS_2           9               131
  CLUS_3          30               215
D15V9, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          19               126
  CLUS_2          20               110
  CLUS_3          15               109
  CLUS_4           4                60
D15V10, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1           5                66
  CLUS_2          24               139
  CLUS_3          29               200
D15V11, multiclass
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          17               108
  CLUS_2          14                97
  CLUS_3          10                81
D15V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN CNV         25   16
  8P GAIN WILD-TYPE  152  134
        clus
vv       8P GAIN CNV 8P GAIN WILD-TYPE
  CLUS_1          25               152
  CLUS_2          16               134

Clustering(16) Variable = 8q gain
D16V1, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          17                25
  CLUS_2          10                42
  CLUS_3           7                25
  CLUS_4          14                14
D16V2, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          10                12
  CLUS_2          10                46
  CLUS_3           9                14
  CLUS_4          19                34
D16V3, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          49               145
  CLUS_2          34               128
  CLUS_3          60                73
D16V4, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          40               102
  CLUS_2          19                95
  CLUS_3          42                57
D16V5, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          18                42
  CLUS_2          23                50
  CLUS_3          17                44
D16V6, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          20                38
  CLUS_2          14                33
  CLUS_3          13                36
  CLUS_4          11                29
D16V7, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          41                77
  CLUS_2          25               118
  CLUS_3          54                88
  CLUS_4          19                56
D16V8, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          39                54
  CLUS_2          25               115
  CLUS_3          75               170
D16V9, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          44               101
  CLUS_2          44                86
  CLUS_3          32                92
  CLUS_4          12                52
D16V10, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          14                57
  CLUS_2          53               110
  CLUS_3          65               164
D16V11, multiclass
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          39                86
  CLUS_2          36                75
  CLUS_3          18                73
D16V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN CNV         55   38
  8Q GAIN WILD-TYPE  122  112
        clus
vv       8Q GAIN CNV 8Q GAIN WILD-TYPE
  CLUS_1          55               122
  CLUS_2          38               112

Clustering(17) Variable = 9p gain
D17V1, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           1                41
  CLUS_2           4                48
  CLUS_3           2                30
  CLUS_4           3                25
D17V2, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           1                21
  CLUS_2           5                51
  CLUS_3           0                23
  CLUS_4           4                49
D17V3, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           8               186
  CLUS_2          14               148
  CLUS_3           4               129
D17V4, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           5               137
  CLUS_2           9               105
  CLUS_3           5                94
D17V5, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           6                54
  CLUS_2           2                71
  CLUS_3           2                59
D17V6, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           9                49
  CLUS_2           0                47
  CLUS_3           0                49
  CLUS_4           1                39
D17V7, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           3               115
  CLUS_2          12               131
  CLUS_3           9               133
  CLUS_4           2                73
D17V8, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           7                86
  CLUS_2          13               127
  CLUS_3           6               239
D17V9, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1          13               132
  CLUS_2           4               126
  CLUS_3           3               121
  CLUS_4           6                58
D17V10, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           6                65
  CLUS_2           5               158
  CLUS_3          15               214
D17V11, multiclass
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1          10               115
  CLUS_2           2               109
  CLUS_3           3                88
D17V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN CNV          6    9
  9P GAIN WILD-TYPE  171  141
        clus
vv       9P GAIN CNV 9P GAIN WILD-TYPE
  CLUS_1           6               171
  CLUS_2           9               141

Clustering(18) Variable = 9q gain
D18V1, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2                40
  CLUS_2           9                43
  CLUS_3           3                29
  CLUS_4           3                25
D18V2, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           1                21
  CLUS_2          10                46
  CLUS_3           1                22
  CLUS_4           5                48
D18V3, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          11               183
  CLUS_2          26               136
  CLUS_3           4               129
D18V4, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           4               138
  CLUS_2          19                95
  CLUS_3           4                95
D18V5, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           7                53
  CLUS_2           2                71
  CLUS_3           7                54
D18V6, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          11                47
  CLUS_2           3                44
  CLUS_3           0                49
  CLUS_4           2                38
D18V7, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           2               116
  CLUS_2          24               119
  CLUS_3          12               130
  CLUS_4           2                73
D18V8, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           8                85
  CLUS_2          24               116
  CLUS_3           8               237
D18V9, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          16               129
  CLUS_2           8               122
  CLUS_3           4               120
  CLUS_4          13                51
D18V10, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          12                59
  CLUS_2          11               152
  CLUS_3          18               211
D18V11, multiclass
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1          13               112
  CLUS_2           6               105
  CLUS_3           4                87
D18V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN CNV          8   15
  9Q GAIN WILD-TYPE  169  135
        clus
vv       9Q GAIN CNV 9Q GAIN WILD-TYPE
  CLUS_1           8               169
  CLUS_2          15               135

Clustering(19) Variable = 10p gain
D19V1, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            1                 41
  CLUS_2            1                 51
  CLUS_3            1                 31
  CLUS_4            2                 26
D19V2, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            0                 22
  CLUS_2            2                 54
  CLUS_3            1                 22
  CLUS_4            2                 51
D19V3, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            4                190
  CLUS_2           12                150
  CLUS_3           11                122
D19V4, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1           10                132
  CLUS_2            5                109
  CLUS_3            9                 90
D19V5, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            2                 58
  CLUS_2            6                 67
  CLUS_3            4                 57
D19V6, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            1                 46
  CLUS_3            5                 44
  CLUS_4            3                 37
D19V7, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            5                113
  CLUS_2           10                133
  CLUS_3            8                134
  CLUS_4            4                 71
D19V8, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            6                 87
  CLUS_2            9                131
  CLUS_3           12                233
D19V9, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            7                138
  CLUS_2           12                118
  CLUS_3            5                119
  CLUS_4            2                 62
D19V10, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1            3                 68
  CLUS_2           14                149
  CLUS_3            9                220
D19V11, multiclass
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1           10                115
  CLUS_2            7                104
  CLUS_3            5                 86
D19V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN CNV         11   11
  10P GAIN WILD-TYPE  166  139
        clus
vv       10P GAIN CNV 10P GAIN WILD-TYPE
  CLUS_1           11                166
  CLUS_2           11                139

Clustering(20) Variable = 10q gain
D20V1, multiclass
[1] "Remove cluster labels:" "10Q GAIN CNV"          
clus
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 2                152 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3417         TCGA-18-3419         TCGA-18-3421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4083         TCGA-18-4086         TCGA-21-1070 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1071         TCGA-21-1072         TCGA-21-1075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1076         TCGA-21-1077         TCGA-21-1078 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-22-0940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4594         TCGA-22-4595         TCGA-22-4596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4589         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-37-3783         TCGA-37-3789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-43-2576         TCGA-43-2578 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2581         TCGA-43-3394         TCGA-43-3920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3765         TCGA-46-3766         TCGA-46-3767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-3769         TCGA-51-4079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-56-1622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2695         TCGA-60-2696         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2706         TCGA-60-2707         TCGA-60-2708 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-63-5128         TCGA-63-5131         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
D20V2, multiclass
[1] "Remove cluster labels:" "10Q GAIN CNV"          
clus
      10Q GAIN CNV 10Q GAIN WILD-TYPE 
                 2                152 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-3417         TCGA-18-3419         TCGA-18-3421 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-18-4083         TCGA-18-4086         TCGA-21-1070 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1071         TCGA-21-1072         TCGA-21-1075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1076         TCGA-21-1077         TCGA-21-1078 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-22-0940 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-0944         TCGA-22-1000         TCGA-22-1002 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1005         TCGA-22-1011         TCGA-22-1012 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-1016         TCGA-22-1017         TCGA-22-4591 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4594         TCGA-22-4595         TCGA-22-4596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4599         TCGA-22-4601         TCGA-22-4604 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4613         TCGA-33-4532 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4533         TCGA-33-4538         TCGA-33-4547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-33-4582         TCGA-33-4589         TCGA-34-2596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2600         TCGA-34-2604         TCGA-34-2605 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5240 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-34-5241         TCGA-37-3783         TCGA-37-3789 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-3792         TCGA-37-4129         TCGA-37-4130 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4132         TCGA-37-4133         TCGA-37-4135 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-37-4141         TCGA-39-5011         TCGA-39-5016 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5029         TCGA-39-5030 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5034         TCGA-39-5035         TCGA-39-5036 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-39-5037         TCGA-43-2576         TCGA-43-2578 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-43-2581         TCGA-43-3394         TCGA-43-3920 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3765         TCGA-46-3766         TCGA-46-3767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-46-3768         TCGA-46-3769         TCGA-51-4079 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-51-4080         TCGA-51-4081         TCGA-56-1622 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2695         TCGA-60-2696         TCGA-60-2698 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2706         TCGA-60-2707         TCGA-60-2708 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2710         TCGA-60-2711         TCGA-60-2712 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2713         TCGA-60-2714         TCGA-60-2715 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2722         TCGA-60-2723 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-60-2724         TCGA-60-2725         TCGA-60-2726 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-63-5128         TCGA-63-5131         TCGA-66-2727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2734         TCGA-66-2737         TCGA-66-2742 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2744         TCGA-66-2753         TCGA-66-2754 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2755         TCGA-66-2756         TCGA-66-2757 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2758         TCGA-66-2759         TCGA-66-2763 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2765         TCGA-66-2766         TCGA-66-2767 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2768         TCGA-66-2769         TCGA-66-2770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2771         TCGA-66-2773         TCGA-66-2777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2780         TCGA-66-2781 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2782         TCGA-66-2783         TCGA-66-2785 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2786         TCGA-66-2787         TCGA-66-2788 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2789         TCGA-66-2790         TCGA-66-2791 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2792         TCGA-66-2793         TCGA-66-2794 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
D20V3, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            1                193
  CLUS_2            3                159
  CLUS_3            4                129
D20V4, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            3                139
  CLUS_2            1                113
  CLUS_3            3                 96
D20V5, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            1                 59
  CLUS_2            4                 69
  CLUS_3            0                 61
D20V6, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            2                 56
  CLUS_2            0                 47
  CLUS_3            2                 47
  CLUS_4            1                 39
D20V7, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            1                117
  CLUS_2            3                140
  CLUS_3            3                139
  CLUS_4            1                 74
D20V8, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            1                 92
  CLUS_2            3                137
  CLUS_3            4                241
D20V9, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            3                142
  CLUS_2            4                126
  CLUS_3            0                124
  CLUS_4            1                 63
D20V10, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            1                 70
  CLUS_2            4                159
  CLUS_3            3                226
D20V11, multiclass
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            4                121
  CLUS_2            2                109
  CLUS_3            0                 91
D20V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN CNV          3    3
  10Q GAIN WILD-TYPE  174  147
        clus
vv       10Q GAIN CNV 10Q GAIN WILD-TYPE
  CLUS_1            3                174
  CLUS_2            3                147

Clustering(21) Variable = 11p gain
D21V1, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            3                 39
  CLUS_2            4                 48
  CLUS_3            2                 30
  CLUS_4            3                 25
D21V2, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2            4                 52
  CLUS_3            1                 22
  CLUS_4            6                 47
D21V3, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            6                188
  CLUS_2           12                150
  CLUS_3            8                125
D21V4, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                140
  CLUS_2            7                107
  CLUS_3            6                 93
D21V5, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            6                 54
  CLUS_2            2                 71
  CLUS_3            4                 57
D21V6, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            4                 54
  CLUS_2            6                 41
  CLUS_3            1                 48
  CLUS_4            1                 39
D21V7, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            2                116
  CLUS_2           11                132
  CLUS_3           11                131
  CLUS_4            2                 73
D21V8, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            7                 86
  CLUS_2           10                130
  CLUS_3            9                236
D21V9, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            9                136
  CLUS_2           13                117
  CLUS_3            1                123
  CLUS_4            3                 61
D21V10, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            5                 66
  CLUS_2           12                151
  CLUS_3            9                220
D21V11, multiclass
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            8                117
  CLUS_2            4                107
  CLUS_3            2                 89
D21V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN CNV          5    9
  11P GAIN WILD-TYPE  172  141
        clus
vv       11P GAIN CNV 11P GAIN WILD-TYPE
  CLUS_1            5                172
  CLUS_2            9                141

Clustering(22) Variable = 11q gain
D22V1, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            4                 38
  CLUS_2            2                 50
  CLUS_3            0                 32
  CLUS_4            4                 24
D22V2, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            2                 20
  CLUS_2            2                 54
  CLUS_3            2                 21
  CLUS_4            4                 49
D22V3, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            3                191
  CLUS_2           12                150
  CLUS_3           13                120
D22V4, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            4                138
  CLUS_2            6                108
  CLUS_3            9                 90
D22V5, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            6                 54
  CLUS_2            4                 69
  CLUS_3            6                 55
D22V6, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            5                 53
  CLUS_2            5                 42
  CLUS_3            5                 44
  CLUS_4            1                 39
D22V7, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            5                113
  CLUS_2            9                134
  CLUS_3           12                130
  CLUS_4            2                 73
D22V8, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            8                 85
  CLUS_2            9                131
  CLUS_3           11                234
D22V9, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1           11                134
  CLUS_2           11                119
  CLUS_3            4                120
  CLUS_4            2                 62
D22V10, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            5                 66
  CLUS_2           13                150
  CLUS_3           10                219
D22V11, multiclass
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1           11                114
  CLUS_2            4                107
  CLUS_3            3                 88
D22V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN CNV          6   12
  11Q GAIN WILD-TYPE  171  138
        clus
vv       11Q GAIN CNV 11Q GAIN WILD-TYPE
  CLUS_1            6                171
  CLUS_2           12                138

Clustering(23) Variable = 12p gain
D23V1, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            6                 36
  CLUS_2           20                 32
  CLUS_3            8                 24
  CLUS_4           11                 17
D23V2, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1            6                 16
  CLUS_2           21                 35
  CLUS_3            4                 19
  CLUS_4           14                 39
D23V3, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           27                167
  CLUS_2           65                 97
  CLUS_3           50                 83
D23V4, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           30                112
  CLUS_2           44                 70
  CLUS_3           35                 64
D23V5, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           24                 36
  CLUS_2           23                 50
  CLUS_3           16                 45
D23V6, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           18                 40
  CLUS_2           15                 32
  CLUS_3           19                 30
  CLUS_4           11                 29
D23V7, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           21                 97
  CLUS_2           53                 90
  CLUS_3           50                 92
  CLUS_4           14                 61
D23V8, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           33                 60
  CLUS_2           50                 90
  CLUS_3           55                190
D23V9, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           41                104
  CLUS_2           47                 83
  CLUS_3           27                 97
  CLUS_4           21                 43
D23V10, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           26                 45
  CLUS_2           51                112
  CLUS_3           59                170
D23V11, multiclass
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           44                 81
  CLUS_2           27                 84
  CLUS_3           24                 67
D23V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN CNV         45   50
  12P GAIN WILD-TYPE  132  100
        clus
vv       12P GAIN CNV 12P GAIN WILD-TYPE
  CLUS_1           45                132
  CLUS_2           50                100

Clustering(24) Variable = 12q gain
D24V1, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            2                 40
  CLUS_2            9                 43
  CLUS_3            4                 28
  CLUS_4            9                 19
D24V2, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            6                 16
  CLUS_2           10                 46
  CLUS_3            2                 21
  CLUS_4            6                 47
D24V3, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           10                184
  CLUS_2           35                127
  CLUS_3           16                117
D24V4, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           12                130
  CLUS_2           17                 97
  CLUS_3           13                 86
D24V5, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           13                 47
  CLUS_2            7                 66
  CLUS_3            9                 52
D24V6, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           10                 48
  CLUS_2            8                 39
  CLUS_3            5                 44
  CLUS_4            6                 34
D24V7, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1            8                110
  CLUS_2           22                121
  CLUS_3           19                123
  CLUS_4            9                 66
D24V8, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           16                 77
  CLUS_2           22                118
  CLUS_3           20                225
D24V9, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           20                125
  CLUS_2           16                114
  CLUS_3           11                113
  CLUS_4           12                 52
D24V10, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           15                 56
  CLUS_2           15                148
  CLUS_3           29                200
D24V11, multiclass
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           26                 99
  CLUS_2            4                107
  CLUS_3            6                 85
D24V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN CNV         12   24
  12Q GAIN WILD-TYPE  165  126
        clus
vv       12Q GAIN CNV 12Q GAIN WILD-TYPE
  CLUS_1           12                165
  CLUS_2           24                126

Clustering(25) Variable = 13q gain
D25V1, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            2                 40
  CLUS_2            1                 51
  CLUS_3            0                 32
  CLUS_4            1                 27
D25V2, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2            1                 55
  CLUS_3            0                 23
  CLUS_4            2                 51
D25V3, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            5                189
  CLUS_2            6                156
  CLUS_3            2                131
D25V4, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            4                138
  CLUS_2            3                111
  CLUS_3            3                 96
D25V5, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            0                 60
  CLUS_2            3                 70
  CLUS_3            3                 58
D25V6, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            1                 57
  CLUS_2            3                 44
  CLUS_3            2                 47
  CLUS_4            0                 40
D25V7, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            5                113
  CLUS_2            2                141
  CLUS_3            4                138
  CLUS_4            2                 73
D25V8, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            3                 90
  CLUS_2            2                138
  CLUS_3            8                237
D25V9, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            5                140
  CLUS_2            2                128
  CLUS_3            4                120
  CLUS_4            1                 63
D25V10, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            1                 70
  CLUS_2            3                160
  CLUS_3            8                221
D25V11, multiclass
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            4                121
  CLUS_2            4                107
  CLUS_3            1                 90
D25V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN CNV          7    2
  13Q GAIN WILD-TYPE  170  148
        clus
vv       13Q GAIN CNV 13Q GAIN WILD-TYPE
  CLUS_1            7                170
  CLUS_2            2                148

Clustering(26) Variable = 14q gain
D26V1, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           10                 32
  CLUS_2            6                 46
  CLUS_3            2                 30
  CLUS_4            4                 24
D26V2, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            2                 20
  CLUS_2            6                 50
  CLUS_3            5                 18
  CLUS_4            9                 44
D26V3, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           17                177
  CLUS_2           21                141
  CLUS_3           20                113
D26V4, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           12                130
  CLUS_2           10                104
  CLUS_3           17                 82
D26V5, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            5                 55
  CLUS_2            8                 65
  CLUS_3            5                 56
D26V6, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            5                 53
  CLUS_2            6                 41
  CLUS_3            5                 44
  CLUS_4            2                 38
D26V7, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           20                 98
  CLUS_2           15                128
  CLUS_3           13                129
  CLUS_4            9                 66
D26V8, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            7                 86
  CLUS_2           13                127
  CLUS_3           37                208
D26V9, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           19                126
  CLUS_2           20                110
  CLUS_3           13                111
  CLUS_4            4                 60
D26V10, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1            2                 69
  CLUS_2           26                137
  CLUS_3           28                201
D26V11, multiclass
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           16                109
  CLUS_2           15                 96
  CLUS_3            4                 87
D26V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN CNV         21   14
  14Q GAIN WILD-TYPE  156  136
        clus
vv       14Q GAIN CNV 14Q GAIN WILD-TYPE
  CLUS_1           21                156
  CLUS_2           14                136

Clustering(27) Variable = 15q gain
D27V1, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            3                 39
  CLUS_2           10                 42
  CLUS_3            4                 28
  CLUS_4            3                 25
D27V2, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            3                 19
  CLUS_2           12                 44
  CLUS_3            1                 22
  CLUS_4            4                 49
D27V3, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            9                185
  CLUS_2           26                136
  CLUS_3           10                123
D27V4, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            6                136
  CLUS_2           16                 98
  CLUS_3            7                 92
D27V5, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            7                 53
  CLUS_2            4                 69
  CLUS_3            9                 52
D27V6, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            6                 52
  CLUS_2            8                 39
  CLUS_3            1                 48
  CLUS_4            5                 35
D27V7, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            0                118
  CLUS_2           24                119
  CLUS_3           10                132
  CLUS_4            7                 68
D27V8, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            6                 87
  CLUS_2           24                116
  CLUS_3           11                234
D27V9, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1           13                132
  CLUS_2           12                118
  CLUS_3            4                120
  CLUS_4           15                 49
D27V10, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1           14                 57
  CLUS_2           16                147
  CLUS_3           14                215
D27V11, multiclass
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1           16                109
  CLUS_2            1                110
  CLUS_3            8                 83
D27V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN CNV          7   18
  15Q GAIN WILD-TYPE  170  132
        clus
vv       15Q GAIN CNV 15Q GAIN WILD-TYPE
  CLUS_1            7                170
  CLUS_2           18                132

Clustering(28) Variable = 16p gain
D28V1, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            3                 39
  CLUS_2            4                 48
  CLUS_3            0                 32
  CLUS_4            2                 26
D28V2, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2            4                 52
  CLUS_3            2                 21
  CLUS_4            2                 51
D28V3, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            1                193
  CLUS_2           12                150
  CLUS_3           11                122
D28V4, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            4                138
  CLUS_2            8                106
  CLUS_3            4                 95
D28V5, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            4                 56
  CLUS_2            4                 69
  CLUS_3            2                 59
D28V6, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            1                 46
  CLUS_3            5                 44
  CLUS_4            1                 39
D28V7, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            7                111
  CLUS_2            8                135
  CLUS_3            9                133
  CLUS_4            0                 75
D28V8, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            7                 86
  CLUS_2            8                132
  CLUS_3            9                236
D28V9, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1           11                134
  CLUS_2            8                122
  CLUS_3            2                122
  CLUS_4            2                 62
D28V10, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            2                 69
  CLUS_2            7                156
  CLUS_3           14                215
D28V11, multiclass
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            9                116
  CLUS_2            5                106
  CLUS_3            1                 90
D28V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN CNV          6    9
  16P GAIN WILD-TYPE  171  141
        clus
vv       16P GAIN CNV 16P GAIN WILD-TYPE
  CLUS_1            6                171
  CLUS_2            9                141

Clustering(29) Variable = 16q gain
D29V1, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            5                 37
  CLUS_2            3                 49
  CLUS_3            0                 32
  CLUS_4            3                 25
D29V2, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2            4                 52
  CLUS_3            4                 19
  CLUS_4            2                 51
D29V3, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            0                194
  CLUS_2           11                151
  CLUS_3           15                118
D29V4, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            4                138
  CLUS_2            8                106
  CLUS_3            4                 95
D29V5, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            5                 55
  CLUS_2            6                 67
  CLUS_3            2                 59
D29V6, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            2                 45
  CLUS_3            7                 42
  CLUS_4            1                 39
D29V7, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            7                111
  CLUS_2            9                134
  CLUS_3            9                133
  CLUS_4            1                 74
D29V8, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            8                 85
  CLUS_2            9                131
  CLUS_3            9                236
D29V9, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1           13                132
  CLUS_2            6                124
  CLUS_3            2                122
  CLUS_4            4                 60
D29V10, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            3                 68
  CLUS_2            7                156
  CLUS_3           15                214
D29V11, multiclass
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            7                118
  CLUS_2            5                106
  CLUS_3            3                 88
D29V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN CNV          7    8
  16Q GAIN WILD-TYPE  170  142
        clus
vv       16Q GAIN CNV 16Q GAIN WILD-TYPE
  CLUS_1            7                170
  CLUS_2            8                142

Clustering(30) Variable = 17p gain
D30V1, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                 42
  CLUS_2            3                 49
  CLUS_3            0                 32
  CLUS_4            1                 27
D30V2, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2            3                 53
  CLUS_3            0                 23
  CLUS_4            0                 53
D30V3, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                194
  CLUS_2           16                146
  CLUS_3            3                130
D30V4, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            1                141
  CLUS_2           12                102
  CLUS_3            2                 97
D30V5, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            3                 57
  CLUS_2            1                 72
  CLUS_3            4                 57
D30V6, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            2                 56
  CLUS_2            3                 44
  CLUS_3            1                 48
  CLUS_4            2                 38
D30V7, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            0                118
  CLUS_2           15                128
  CLUS_3            3                139
  CLUS_4            1                 74
D30V8, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            3                 90
  CLUS_2           15                125
  CLUS_3            1                244
D30V9, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            4                141
  CLUS_2            6                124
  CLUS_3            2                122
  CLUS_4            6                 58
D30V10, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            9                 62
  CLUS_2            2                161
  CLUS_3            7                222
D30V11, multiclass
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1           11                114
  CLUS_2            1                110
  CLUS_3            3                 88
D30V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN CNV          5   10
  17P GAIN WILD-TYPE  172  140
        clus
vv       17P GAIN CNV 17P GAIN WILD-TYPE
  CLUS_1            5                172
  CLUS_2           10                140

Clustering(31) Variable = 17q gain
D31V1, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            3                 39
  CLUS_2           14                 38
  CLUS_3            1                 31
  CLUS_4            6                 22
D31V2, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2           15                 41
  CLUS_3            6                 17
  CLUS_4            2                 51
D31V3, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            3                191
  CLUS_2           46                116
  CLUS_3           16                117
D31V4, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            5                137
  CLUS_2           32                 82
  CLUS_3           11                 88
D31V5, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            9                 51
  CLUS_2            9                 64
  CLUS_3            4                 57
D31V6, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            6                 52
  CLUS_2            6                 41
  CLUS_3            8                 41
  CLUS_4            2                 38
D31V7, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1            6                112
  CLUS_2           38                105
  CLUS_3           17                125
  CLUS_4            2                 73
D31V8, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           11                 82
  CLUS_2           36                104
  CLUS_3           16                229
D31V9, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           18                127
  CLUS_2           25                105
  CLUS_3            5                119
  CLUS_4           13                 51
D31V10, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           19                 52
  CLUS_2           21                142
  CLUS_3           21                208
D31V11, multiclass
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           27                 98
  CLUS_2            6                105
  CLUS_3            8                 83
D31V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN CNV         11   30
  17Q GAIN WILD-TYPE  166  120
        clus
vv       17Q GAIN CNV 17Q GAIN WILD-TYPE
  CLUS_1           11                166
  CLUS_2           30                120

Clustering(32) Variable = 18p gain
D32V1, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            3                 39
  CLUS_2           20                 32
  CLUS_3            4                 28
  CLUS_4            2                 26
D32V2, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2           23                 33
  CLUS_3            1                 22
  CLUS_4            4                 49
D32V3, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           17                177
  CLUS_2           53                109
  CLUS_3           13                120
D32V4, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           10                132
  CLUS_2           31                 83
  CLUS_3           19                 80
D32V5, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           16                 44
  CLUS_2           10                 63
  CLUS_3            9                 52
D32V6, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           12                 46
  CLUS_2           12                 35
  CLUS_3            8                 41
  CLUS_4            3                 37
D32V7, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           15                103
  CLUS_2           42                101
  CLUS_3           18                124
  CLUS_4            5                 70
D32V8, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           10                 83
  CLUS_2           40                100
  CLUS_3           30                215
D32V9, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           27                118
  CLUS_2           27                103
  CLUS_3            9                115
  CLUS_4           17                 47
D32V10, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           21                 50
  CLUS_2           28                135
  CLUS_3           31                198
D32V11, multiclass
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           33                 92
  CLUS_2            9                102
  CLUS_3            9                 82
D32V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN CNV         13   38
  18P GAIN WILD-TYPE  164  112
        clus
vv       18P GAIN CNV 18P GAIN WILD-TYPE
  CLUS_1           13                164
  CLUS_2           38                112

Clustering(33) Variable = 18q gain
D33V1, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            2                 40
  CLUS_2           16                 36
  CLUS_3            0                 32
  CLUS_4            4                 24
D33V2, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            1                 21
  CLUS_2           17                 39
  CLUS_3            2                 21
  CLUS_4            2                 51
D33V3, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            7                187
  CLUS_2           31                131
  CLUS_3            9                124
D33V4, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            4                138
  CLUS_2           18                 96
  CLUS_3            7                 92
D33V5, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           10                 50
  CLUS_2            4                 69
  CLUS_3            7                 54
D33V6, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            8                 50
  CLUS_2            9                 38
  CLUS_3            3                 46
  CLUS_4            1                 39
D33V7, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            7                111
  CLUS_2           26                117
  CLUS_3           12                130
  CLUS_4            0                 75
D33V8, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           11                 82
  CLUS_2           25                115
  CLUS_3            9                236
D33V9, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           18                127
  CLUS_2           13                117
  CLUS_3            4                120
  CLUS_4           10                 54
D33V10, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           15                 56
  CLUS_2           14                149
  CLUS_3           16                213
D33V11, multiclass
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1           16                109
  CLUS_2            3                108
  CLUS_3            4                 87
D33V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN CNV          4   19
  18Q GAIN WILD-TYPE  173  131
        clus
vv       18Q GAIN CNV 18Q GAIN WILD-TYPE
  CLUS_1            4                173
  CLUS_2           19                131

Clustering(34) Variable = 19p gain
D34V1, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            4                 38
  CLUS_2            8                 44
  CLUS_3            2                 30
  CLUS_4            4                 24
D34V2, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            3                 19
  CLUS_2            8                 48
  CLUS_3            2                 21
  CLUS_4            5                 48
D34V3, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            9                185
  CLUS_2           37                125
  CLUS_3            5                128
D34V4, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            6                136
  CLUS_2           22                 92
  CLUS_3           12                 87
D34V5, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           16                 44
  CLUS_2            3                 70
  CLUS_3            7                 54
D34V6, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           16                 42
  CLUS_2            4                 43
  CLUS_3            2                 47
  CLUS_4            4                 36
D34V7, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            7                111
  CLUS_2           24                119
  CLUS_3           17                125
  CLUS_4            1                 74
D34V8, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           13                 80
  CLUS_2           25                115
  CLUS_3           11                234
D34V9, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           19                126
  CLUS_2           14                116
  CLUS_3            3                121
  CLUS_4           14                 50
D34V10, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           16                 55
  CLUS_2           12                151
  CLUS_3           22                207
D34V11, multiclass
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1           25                100
  CLUS_2            5                106
  CLUS_3            2                 89
D34V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN CNV          8   24
  19P GAIN WILD-TYPE  169  126
        clus
vv       19P GAIN CNV 19P GAIN WILD-TYPE
  CLUS_1            8                169
  CLUS_2           24                126

Clustering(35) Variable = 19q gain
D35V1, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            6                 36
  CLUS_2            8                 44
  CLUS_3            2                 30
  CLUS_4            5                 23
D35V2, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            3                 19
  CLUS_2            8                 48
  CLUS_3            3                 20
  CLUS_4            7                 46
D35V3, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           14                180
  CLUS_2           40                122
  CLUS_3           18                115
D35V4, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           17                125
  CLUS_2           28                 86
  CLUS_3           15                 84
D35V5, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           16                 44
  CLUS_2            8                 65
  CLUS_3           10                 51
D35V6, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           18                 40
  CLUS_2            5                 42
  CLUS_3            5                 44
  CLUS_4            6                 34
D35V7, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1            7                111
  CLUS_2           28                115
  CLUS_3           27                115
  CLUS_4            8                 67
D35V8, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           20                 73
  CLUS_2           27                113
  CLUS_3           23                222
D35V9, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           24                121
  CLUS_2           21                109
  CLUS_3           12                112
  CLUS_4           12                 52
D35V10, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           15                 56
  CLUS_2           22                141
  CLUS_3           32                197
D35V11, multiclass
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           31                 94
  CLUS_2           10                101
  CLUS_3            9                 82
D35V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN CNV         21   29
  19Q GAIN WILD-TYPE  156  121
        clus
vv       19Q GAIN CNV 19Q GAIN WILD-TYPE
  CLUS_1           21                156
  CLUS_2           29                121

Clustering(36) Variable = 20p gain
D36V1, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           13                 29
  CLUS_2           20                 32
  CLUS_3            5                 27
  CLUS_4            7                 21
D36V2, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1            3                 19
  CLUS_2           20                 36
  CLUS_3           10                 13
  CLUS_4           12                 41
D36V3, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           23                171
  CLUS_2           66                 96
  CLUS_3           52                 81
D36V4, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           26                116
  CLUS_2           44                 70
  CLUS_3           33                 66
D36V5, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           17                 43
  CLUS_2           16                 57
  CLUS_3           16                 45
D36V6, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           12                 46
  CLUS_2           17                 30
  CLUS_3           13                 36
  CLUS_4            7                 33
D36V7, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           22                 96
  CLUS_2           56                 87
  CLUS_3           43                 99
  CLUS_4           17                 58
D36V8, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           35                 58
  CLUS_2           53                 87
  CLUS_3           50                195
D36V9, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           30                115
  CLUS_2           49                 81
  CLUS_3           30                 94
  CLUS_4           22                 42
D36V10, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           25                 46
  CLUS_2           53                110
  CLUS_3           53                176
D36V11, multiclass
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           47                 78
  CLUS_2           30                 81
  CLUS_3           18                 73
D36V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN CNV         42   53
  20P GAIN WILD-TYPE  135   97
        clus
vv       20P GAIN CNV 20P GAIN WILD-TYPE
  CLUS_1           42                135
  CLUS_2           53                 97

Clustering(37) Variable = 20q gain
D37V1, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           12                 30
  CLUS_2           12                 40
  CLUS_3            7                 25
  CLUS_4           11                 17
D37V2, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1            7                 15
  CLUS_2           12                 44
  CLUS_3            9                 14
  CLUS_4           14                 39
D37V3, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           21                173
  CLUS_2           52                110
  CLUS_3           57                 76
D37V4, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           26                116
  CLUS_2           32                 82
  CLUS_3           36                 63
D37V5, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           16                 44
  CLUS_2           16                 57
  CLUS_3           12                 49
D37V6, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           15                 43
  CLUS_2           11                 36
  CLUS_3           13                 36
  CLUS_4            5                 35
D37V7, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           28                 90
  CLUS_2           38                105
  CLUS_3           49                 93
  CLUS_4           15                 60
D37V8, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           38                 55
  CLUS_2           35                105
  CLUS_3           57                188
D37V9, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           31                114
  CLUS_2           47                 83
  CLUS_3           27                 97
  CLUS_4           15                 49
D37V10, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           15                 56
  CLUS_2           57                106
  CLUS_3           48                181
D37V11, multiclass
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           43                 82
  CLUS_2           27                 84
  CLUS_3           17                 74
D37V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN CNV         41   46
  20Q GAIN WILD-TYPE  136  104
        clus
vv       20Q GAIN CNV 20Q GAIN WILD-TYPE
  CLUS_1           41                136
  CLUS_2           46                104

Clustering(38) Variable = 21q gain
D38V1, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            2                 40
  CLUS_2            4                 48
  CLUS_3            2                 30
  CLUS_4            2                 26
D38V2, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            3                 19
  CLUS_2            4                 52
  CLUS_3            0                 23
  CLUS_4            3                 50
D38V3, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            8                186
  CLUS_2            5                157
  CLUS_3            9                124
D38V4, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            0                142
  CLUS_2            4                110
  CLUS_3           10                 89
D38V5, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            4                 56
  CLUS_2            2                 71
  CLUS_3            3                 58
D38V6, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            2                 56
  CLUS_2            3                 44
  CLUS_3            2                 47
  CLUS_4            2                 38
D38V7, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            6                112
  CLUS_2            4                139
  CLUS_3            8                134
  CLUS_4            3                 72
D38V8, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            5                 88
  CLUS_2            4                136
  CLUS_3           12                233
D38V9, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            7                138
  CLUS_2            5                125
  CLUS_3            3                121
  CLUS_4            5                 59
D38V10, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            5                 66
  CLUS_2            9                154
  CLUS_3            6                223
D38V11, multiclass
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            5                120
  CLUS_2            4                107
  CLUS_3            2                 89
D38V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN CNV          4    7
  21Q GAIN WILD-TYPE  173  143
        clus
vv       21Q GAIN CNV 21Q GAIN WILD-TYPE
  CLUS_1            4                173
  CLUS_2            7                143

Clustering(39) Variable = 22q gain
D39V1, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           10                 32
  CLUS_2           21                 31
  CLUS_3            4                 28
  CLUS_4            3                 25
D39V2, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1            2                 20
  CLUS_2           21                 35
  CLUS_3            8                 15
  CLUS_4            7                 46
D39V3, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           20                174
  CLUS_2           63                 99
  CLUS_3           36                 97
D39V4, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           18                124
  CLUS_2           38                 76
  CLUS_3           30                 69
D39V5, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           17                 43
  CLUS_2           12                 61
  CLUS_3           15                 46
D39V6, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           10                 48
  CLUS_2           19                 28
  CLUS_3            9                 40
  CLUS_4            6                 34
D39V7, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           25                 93
  CLUS_2           53                 90
  CLUS_3           28                114
  CLUS_4           10                 65
D39V8, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           20                 73
  CLUS_2           50                 90
  CLUS_3           46                199
D39V9, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           31                114
  CLUS_2           49                 81
  CLUS_3           16                108
  CLUS_4           20                 44
D39V10, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           24                 47
  CLUS_2           49                114
  CLUS_3           43                186
D39V11, multiclass
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           43                 82
  CLUS_2           22                 89
  CLUS_3           15                 76
D39V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN CNV         31   49
  22Q GAIN WILD-TYPE  146  101
        clus
vv       22Q GAIN CNV 22Q GAIN WILD-TYPE
  CLUS_1           31                146
  CLUS_2           49                101

Clustering(40) Variable = Xq gain
D40V1, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           2                40
  CLUS_2           1                51
  CLUS_3           0                32
  CLUS_4           1                27
D40V2, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           1                21
  CLUS_2           1                55
  CLUS_3           1                22
  CLUS_4           1                52
D40V3, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3               191
  CLUS_2           7               155
  CLUS_3           7               126
D40V4, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           1               141
  CLUS_2           5               109
  CLUS_3           7                92
D40V5, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3                57
  CLUS_2           1                72
  CLUS_3           1                60
D40V6, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3                55
  CLUS_2           1                46
  CLUS_3           1                48
  CLUS_4           0                40
D40V7, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3               115
  CLUS_2           5               138
  CLUS_3           6               136
  CLUS_4           2                73
D40V8, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           5                88
  CLUS_2           4               136
  CLUS_3           7               238
D40V9, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           3               142
  CLUS_2           9               121
  CLUS_3           2               122
  CLUS_4           2                62
D40V10, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           0                71
  CLUS_2           9               154
  CLUS_3           7               222
D40V11, multiclass
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           7               118
  CLUS_2           4               107
  CLUS_3           2                89
D40V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN CNV          5    8
  XQ GAIN WILD-TYPE  172  142
        clus
vv       XQ GAIN CNV XQ GAIN WILD-TYPE
  CLUS_1           5               172
  CLUS_2           8               142

Clustering(41) Variable = 1p loss
D41V1, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           4                38
  CLUS_2          15                37
  CLUS_3           1                31
  CLUS_4           1                27
D41V2, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           2                20
  CLUS_2          16                40
  CLUS_3           2                21
  CLUS_4           1                52
D41V3, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           5               189
  CLUS_2          60               102
  CLUS_3          12               121
D41V4, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           5               137
  CLUS_2          38                76
  CLUS_3          17                82
D41V5, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          10                50
  CLUS_2           8                65
  CLUS_3          13                48
D41V6, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          10                48
  CLUS_2          13                34
  CLUS_3           2                47
  CLUS_4           6                34
D41V7, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           9               109
  CLUS_2          53                90
  CLUS_3          11               131
  CLUS_4           4                71
D41V8, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1           7                86
  CLUS_2          51                89
  CLUS_3          19               226
D41V9, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          21               124
  CLUS_2          29               101
  CLUS_3           6               118
  CLUS_4          18                46
D41V10, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          19                52
  CLUS_2          23               140
  CLUS_3          32               197
D41V11, multiclass
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          30                95
  CLUS_2          11               100
  CLUS_3          12                79
D41V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS CNV         11   42
  1P LOSS WILD-TYPE  166  108
        clus
vv       1P LOSS CNV 1P LOSS WILD-TYPE
  CLUS_1          11               166
  CLUS_2          42               108

Clustering(42) Variable = 1q loss
D42V1, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           1                41
  CLUS_2           1                51
  CLUS_3           0                32
  CLUS_4           1                27
D42V2, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           1                21
  CLUS_2           1                55
  CLUS_3           0                23
  CLUS_4           1                52
D42V3, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           1               193
  CLUS_2          11               151
  CLUS_3           6               127
D42V4, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3               139
  CLUS_2           8               106
  CLUS_3           6                93
D42V5, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3                57
  CLUS_2           2                71
  CLUS_3           3                58
D42V6, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3                55
  CLUS_2           4                43
  CLUS_3           0                49
  CLUS_4           1                39
D42V7, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           4               114
  CLUS_2          10               133
  CLUS_3           3               139
  CLUS_4           1                74
D42V8, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           2                91
  CLUS_2          10               130
  CLUS_3           6               239
D42V9, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           5               140
  CLUS_2          10               120
  CLUS_3           1               123
  CLUS_4           2                62
D42V10, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           2                69
  CLUS_2           7               156
  CLUS_3           9               220
D42V11, multiclass
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           9               116
  CLUS_2           4               107
  CLUS_3           2                89
D42V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS CNV          3   12
  1Q LOSS WILD-TYPE  174  138
        clus
vv       1Q LOSS CNV 1Q LOSS WILD-TYPE
  CLUS_1           3               174
  CLUS_2          12               138

Clustering(43) Variable = 2p loss
D43V1, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                1               153 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-21-1070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1077        TCGA-21-1078        TCGA-21-1079        TCGA-21-1080 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1081        TCGA-21-1082        TCGA-21-1083        TCGA-22-0940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4594        TCGA-22-4595        TCGA-22-4596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4589 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5240        TCGA-34-5241 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-39-5011        TCGA-39-5016        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5034        TCGA-39-5035 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-43-2576        TCGA-43-2578 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-46-3765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-3766        TCGA-46-3767        TCGA-46-3768        TCGA-46-3769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-51-4079        TCGA-51-4080        TCGA-51-4081        TCGA-60-2695 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2698        TCGA-60-2706        TCGA-60-2707 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-5128        TCGA-63-5131        TCGA-66-2727        TCGA-66-2734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2800 
"2P LOSS WILD-TYPE" 
D43V2, multiclass
[1] "Remove cluster labels:" "2P LOSS CNV"           
clus
      2P LOSS CNV 2P LOSS WILD-TYPE 
                1               153 
       TCGA-18-3406        TCGA-18-3407        TCGA-18-3408        TCGA-18-3409 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3410        TCGA-18-3411        TCGA-18-3412        TCGA-18-3414 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3415        TCGA-18-3416        TCGA-18-3417        TCGA-18-3419 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-18-3421        TCGA-18-4083        TCGA-18-4086        TCGA-21-1070 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1071        TCGA-21-1072        TCGA-21-1075        TCGA-21-1076 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1077        TCGA-21-1078        TCGA-21-1079        TCGA-21-1080 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-21-1081        TCGA-21-1082        TCGA-21-1083        TCGA-22-0940 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-0944        TCGA-22-1000        TCGA-22-1002        TCGA-22-1005 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-1011        TCGA-22-1012        TCGA-22-1016        TCGA-22-1017 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4591        TCGA-22-4594        TCGA-22-4595        TCGA-22-4596 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4599        TCGA-22-4601        TCGA-22-4604        TCGA-22-4607 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-22-4613        TCGA-33-4532        TCGA-33-4533        TCGA-33-4538 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-33-4547        TCGA-33-4566        TCGA-33-4582        TCGA-33-4589 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2596        TCGA-34-2600        TCGA-34-2604        TCGA-34-2605 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-34-2608        TCGA-34-2609        TCGA-34-5240        TCGA-34-5241 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-3783        TCGA-37-3789        TCGA-37-3792        TCGA-37-4129 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4130        TCGA-37-4132        TCGA-37-4133        TCGA-37-4135 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-37-4141        TCGA-39-5011        TCGA-39-5016        TCGA-39-5021 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5029        TCGA-39-5030        TCGA-39-5034        TCGA-39-5035 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-39-5036        TCGA-39-5037        TCGA-43-2576        TCGA-43-2578 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-43-2581        TCGA-43-3394        TCGA-43-3920        TCGA-46-3765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-46-3766        TCGA-46-3767        TCGA-46-3768        TCGA-46-3769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-51-4079        TCGA-51-4080        TCGA-51-4081        TCGA-60-2695 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2696        TCGA-60-2698        TCGA-60-2706        TCGA-60-2707 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2708        TCGA-60-2710        TCGA-60-2711        TCGA-60-2712 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2713        TCGA-60-2714        TCGA-60-2715        TCGA-60-2716 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2719        TCGA-60-2720        TCGA-60-2721        TCGA-60-2722 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-60-2723        TCGA-60-2724        TCGA-60-2725        TCGA-60-2726 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-63-5128        TCGA-63-5131        TCGA-66-2727        TCGA-66-2734 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2737        TCGA-66-2742        TCGA-66-2744        TCGA-66-2753 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2754        TCGA-66-2755        TCGA-66-2756        TCGA-66-2757 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2758        TCGA-66-2759        TCGA-66-2763        TCGA-66-2765 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2766        TCGA-66-2767        TCGA-66-2768        TCGA-66-2769 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2770        TCGA-66-2771        TCGA-66-2773        TCGA-66-2777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2778        TCGA-66-2780        TCGA-66-2781        TCGA-66-2782 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2783        TCGA-66-2785        TCGA-66-2786        TCGA-66-2787 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2788        TCGA-66-2789        TCGA-66-2790        TCGA-66-2791 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2792        TCGA-66-2793        TCGA-66-2794        TCGA-66-2795 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-66-2800 
"2P LOSS WILD-TYPE" 
D43V3, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0               194
  CLUS_2           2               160
  CLUS_3           4               129
D43V4, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0               142
  CLUS_2           1               113
  CLUS_3           4                95
D43V5, multiclass
D43V6, multiclass
D43V7, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           2               116
  CLUS_2           3               140
  CLUS_3           1               141
  CLUS_4           0                75
D43V8, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1                92
  CLUS_2           3               137
  CLUS_3           2               243
D43V9, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1               144
  CLUS_2           4               126
  CLUS_3           0               124
  CLUS_4           1                63
D43V10, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           1                70
  CLUS_2           2               161
  CLUS_3           3               226
D43V11, multiclass
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           3               122
  CLUS_2           0               111
  CLUS_3           2                89
D43V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS CNV          0    5
  2P LOSS WILD-TYPE  177  145
        clus
vv       2P LOSS CNV 2P LOSS WILD-TYPE
  CLUS_1           0               177
  CLUS_2           5               145

Clustering(44) Variable = 2q loss
D44V1, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           2                40
  CLUS_2           2                50
  CLUS_3           0                32
  CLUS_4           1                27
D44V2, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1                21
  CLUS_2           2                54
  CLUS_3           2                21
  CLUS_4           0                53
D44V3, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1               193
  CLUS_2           6               156
  CLUS_3           9               124
D44V4, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           1               141
  CLUS_2           4               110
  CLUS_3           6                93
D44V5, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           2                58
  CLUS_2           1                72
  CLUS_3           2                59
D44V6, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           3                55
  CLUS_2           1                46
  CLUS_3           1                48
  CLUS_4           0                40
D44V7, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           3               115
  CLUS_2           6               137
  CLUS_3           7               135
  CLUS_4           0                75
D44V8, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           6                87
  CLUS_2           7               133
  CLUS_3           3               242
D44V9, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           8               137
  CLUS_2           5               125
  CLUS_3           0               124
  CLUS_4           2                62
D44V10, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           4                67
  CLUS_2           4               159
  CLUS_3           7               222
D44V11, multiclass
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           6               119
  CLUS_2           2               109
  CLUS_3           3                88
D44V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS CNV          3    8
  2Q LOSS WILD-TYPE  174  142
        clus
vv       2Q LOSS CNV 2Q LOSS WILD-TYPE
  CLUS_1           3               174
  CLUS_2           8               142

Clustering(45) Variable = 3p loss
D45V1, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          21                21
  CLUS_2          24                28
  CLUS_3           6                26
  CLUS_4          14                14
D45V2, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1           9                13
  CLUS_2          27                29
  CLUS_3          12                11
  CLUS_4          17                36
D45V3, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          55               139
  CLUS_2          82                80
  CLUS_3          64                69
D45V4, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          34               108
  CLUS_2          53                61
  CLUS_3          54                45
D45V5, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          29                31
  CLUS_2          29                44
  CLUS_3          22                39
D45V6, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          30                28
  CLUS_2          20                27
  CLUS_3          18                31
  CLUS_4          12                28
D45V7, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          46                72
  CLUS_2          70                73
  CLUS_3          62                80
  CLUS_4          23                52
D45V8, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          47                46
  CLUS_2          68                72
  CLUS_3          86               159
D45V9, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          59                86
  CLUS_2          64                66
  CLUS_3          34                90
  CLUS_4          33                31
D45V10, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          35                36
  CLUS_2          70                93
  CLUS_3          85               144
D45V11, multiclass
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          62                63
  CLUS_2          39                72
  CLUS_3          31                60
D45V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS CNV         56   76
  3P LOSS WILD-TYPE  121   74
        clus
vv       3P LOSS CNV 3P LOSS WILD-TYPE
  CLUS_1          56               121
  CLUS_2          76                74

Clustering(46) Variable = 3q loss
D46V1, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           1                41
  CLUS_2           6                46
  CLUS_3           4                28
  CLUS_4           3                25
D46V2, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           3                19
  CLUS_2           6                50
  CLUS_3           2                21
  CLUS_4           3                50
D46V3, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           4               190
  CLUS_2          21               141
  CLUS_3           9               124
D46V4, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           4               138
  CLUS_2           8               106
  CLUS_3           8                91
D46V5, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           3                57
  CLUS_2           7                66
  CLUS_3           4                57
D46V6, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           5                53
  CLUS_2           4                43
  CLUS_3           3                46
  CLUS_4           2                38
D46V7, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           7               111
  CLUS_2          14               129
  CLUS_3          10               132
  CLUS_4           3                72
D46V8, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           6                87
  CLUS_2          13               127
  CLUS_3          15               230
D46V9, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1          11               134
  CLUS_2          12               118
  CLUS_3           6               118
  CLUS_4           3                61
D46V10, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           4                67
  CLUS_2          11               152
  CLUS_3          17               212
D46V11, multiclass
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1          15               110
  CLUS_2           4               107
  CLUS_3           1                90
D46V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS CNV          4   16
  3Q LOSS WILD-TYPE  173  134
        clus
vv       3Q LOSS CNV 3Q LOSS WILD-TYPE
  CLUS_1           4               173
  CLUS_2          16               134

Clustering(47) Variable = 4p loss
D47V1, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          21                21
  CLUS_2          28                24
  CLUS_3           9                23
  CLUS_4          11                17
D47V2, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1           9                13
  CLUS_2          32                24
  CLUS_3          12                11
  CLUS_4          16                37
D47V3, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          44               150
  CLUS_2         103                59
  CLUS_3          53                80
D47V4, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          23               119
  CLUS_2          62                52
  CLUS_3          53                46
D47V5, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          34                26
  CLUS_2          26                47
  CLUS_3          28                33
D47V6, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          29                29
  CLUS_2          25                22
  CLUS_3          19                30
  CLUS_4          15                25
D47V7, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          48                70
  CLUS_2          79                64
  CLUS_3          50                92
  CLUS_4          21                54
D47V8, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          41                52
  CLUS_2          77                63
  CLUS_3          80               165
D47V9, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          68                77
  CLUS_2          69                61
  CLUS_3          23               101
  CLUS_4          31                33
D47V10, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          32                39
  CLUS_2          73                90
  CLUS_3          86               143
D47V11, multiclass
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          70                55
  CLUS_2          31                80
  CLUS_3          27                64
D47V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS CNV         47   81
  4P LOSS WILD-TYPE  130   69
        clus
vv       4P LOSS CNV 4P LOSS WILD-TYPE
  CLUS_1          47               130
  CLUS_2          81                69

Clustering(48) Variable = 4q loss
D48V1, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          13                29
  CLUS_2          27                25
  CLUS_3           7                25
  CLUS_4          13                15
D48V2, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1           9                13
  CLUS_2          30                26
  CLUS_3           9                14
  CLUS_4          12                41
D48V3, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          35               159
  CLUS_2          93                69
  CLUS_3          46                87
D48V4, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          21               121
  CLUS_2          55                59
  CLUS_3          45                54
D48V5, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          31                29
  CLUS_2          19                54
  CLUS_3          21                40
D48V6, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          27                31
  CLUS_2          20                27
  CLUS_3          13                36
  CLUS_4          11                29
D48V7, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          35                83
  CLUS_2          73                70
  CLUS_3          50                92
  CLUS_4          14                61
D48V8, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          40                53
  CLUS_2          71                69
  CLUS_3          61               184
D48V9, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          57                88
  CLUS_2          62                68
  CLUS_3          19               105
  CLUS_4          27                37
D48V10, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          31                40
  CLUS_2          69                94
  CLUS_3          65               164
D48V11, multiclass
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          59                66
  CLUS_2          26                85
  CLUS_3          24                67
D48V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS CNV         39   70
  4Q LOSS WILD-TYPE  138   80
        clus
vv       4Q LOSS CNV 4Q LOSS WILD-TYPE
  CLUS_1          39               138
  CLUS_2          70                80

Clustering(49) Variable = 5p loss
D49V1, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           3                39
  CLUS_2           4                48
  CLUS_3           0                32
  CLUS_4           4                24
D49V2, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           2                20
  CLUS_2           5                51
  CLUS_3           1                22
  CLUS_4           3                50
D49V3, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           6               188
  CLUS_2          20               142
  CLUS_3          10               123
D49V4, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           3               139
  CLUS_2          11               103
  CLUS_3          11                88
D49V5, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           7                53
  CLUS_2           4                69
  CLUS_3           4                57
D49V6, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           3                55
  CLUS_2           7                40
  CLUS_3           2                47
  CLUS_4           3                37
D49V7, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           9               109
  CLUS_2          14               129
  CLUS_3           7               135
  CLUS_4           5                70
D49V8, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           4                89
  CLUS_2          14               126
  CLUS_3          17               228
D49V9, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1          13               132
  CLUS_2          10               120
  CLUS_3           6               118
  CLUS_4           5                59
D49V10, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           6                65
  CLUS_2          12               151
  CLUS_3          16               213
D49V11, multiclass
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1          14               111
  CLUS_2           3               108
  CLUS_3           7                84
D49V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS CNV          7   17
  5P LOSS WILD-TYPE  170  133
        clus
vv       5P LOSS CNV 5P LOSS WILD-TYPE
  CLUS_1           7               170
  CLUS_2          17               133

Clustering(50) Variable = 5q loss
D50V1, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          17                25
  CLUS_2          22                30
  CLUS_3           7                25
  CLUS_4          12                16
D50V2, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1           7                15
  CLUS_2          25                31
  CLUS_3           9                14
  CLUS_4          17                36
D50V3, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          40               154
  CLUS_2          78                84
  CLUS_3          59                74
D50V4, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          25               117
  CLUS_2          50                64
  CLUS_3          48                51
D50V5, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          26                34
  CLUS_2          19                54
  CLUS_3          24                37
D50V6, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          19                39
  CLUS_2          22                25
  CLUS_3          12                37
  CLUS_4          16                24
D50V7, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          42                76
  CLUS_2          63                80
  CLUS_3          48                94
  CLUS_4          22                53
D50V8, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          34                59
  CLUS_2          63                77
  CLUS_3          78               167
D50V9, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          54                91
  CLUS_2          56                74
  CLUS_3          24               100
  CLUS_4          32                32
D50V10, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          31                40
  CLUS_2          64                99
  CLUS_3          71               158
D50V11, multiclass
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          59                66
  CLUS_2          27                84
  CLUS_3          30                61
D50V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS CNV         49   67
  5Q LOSS WILD-TYPE  128   83
        clus
vv       5Q LOSS CNV 5Q LOSS WILD-TYPE
  CLUS_1          49               128
  CLUS_2          67                83

Clustering(51) Variable = 6p loss
D51V1, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           1                41
  CLUS_2           8                44
  CLUS_3           1                31
  CLUS_4           2                26
D51V2, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           1                21
  CLUS_2           9                47
  CLUS_3           0                23
  CLUS_4           2                51
D51V3, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           7               187
  CLUS_2          30               132
  CLUS_3           9               124
D51V4, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           5               137
  CLUS_2          17                97
  CLUS_3          15                84
D51V5, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           9                51
  CLUS_2           6                67
  CLUS_3           2                59
D51V6, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          10                48
  CLUS_2           1                46
  CLUS_3           2                47
  CLUS_4           4                36
D51V7, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           8               110
  CLUS_2          27               116
  CLUS_3           9               133
  CLUS_4           2                73
D51V8, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           5                88
  CLUS_2          26               114
  CLUS_3          15               230
D51V9, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          11               134
  CLUS_2          18               112
  CLUS_3           4               120
  CLUS_4           8                56
D51V10, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           8                63
  CLUS_2          14               149
  CLUS_3          19               210
D51V11, multiclass
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1          20               105
  CLUS_2           9               102
  CLUS_3           4                87
D51V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS CNV          9   24
  6P LOSS WILD-TYPE  168  126
        clus
vv       6P LOSS CNV 6P LOSS WILD-TYPE
  CLUS_1           9               168
  CLUS_2          24               126

Clustering(52) Variable = 6q loss
D52V1, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           3                39
  CLUS_2           9                43
  CLUS_3           1                31
  CLUS_4           2                26
D52V2, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           2                20
  CLUS_2          10                46
  CLUS_3           1                22
  CLUS_4           2                51
D52V3, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          11               183
  CLUS_2          30               132
  CLUS_3          11               122
D52V4, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           8               134
  CLUS_2          20                94
  CLUS_3          14                85
D52V5, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          11                49
  CLUS_2           5                68
  CLUS_3           5                56
D52V6, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          11                47
  CLUS_2           4                43
  CLUS_3           3                46
  CLUS_4           3                37
D52V7, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          12               106
  CLUS_2          26               117
  CLUS_3          10               132
  CLUS_4           4                71
D52V8, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           6                87
  CLUS_2          24               116
  CLUS_3          22               223
D52V9, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          17               128
  CLUS_2          19               111
  CLUS_3           5               119
  CLUS_4           6                58
D52V10, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1           9                62
  CLUS_2          14               149
  CLUS_3          24               205
D52V11, multiclass
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          22               103
  CLUS_2           9               102
  CLUS_3           5                86
D52V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS CNV         12   24
  6Q LOSS WILD-TYPE  165  126
        clus
vv       6Q LOSS CNV 6Q LOSS WILD-TYPE
  CLUS_1          12               165
  CLUS_2          24               126

Clustering(53) Variable = 7p loss
D53V1, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           3                39
  CLUS_2           5                47
  CLUS_3           0                32
  CLUS_4           2                26
D53V2, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           2                20
  CLUS_2           5                51
  CLUS_3           2                21
  CLUS_4           1                52
D53V3, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           5               189
  CLUS_2           9               153
  CLUS_3          16               117
D53V4, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           1               141
  CLUS_2          10               104
  CLUS_3          11                88
D53V5, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           5                55
  CLUS_2           4                69
  CLUS_3           3                58
D53V6, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           2                56
  CLUS_2           6                41
  CLUS_3           4                45
  CLUS_4           0                40
D53V7, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           8               110
  CLUS_2           8               135
  CLUS_3          10               132
  CLUS_4           4                71
D53V8, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           6                87
  CLUS_2           7               133
  CLUS_3          17               228
D53V9, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1          12               133
  CLUS_2           8               122
  CLUS_3           5               119
  CLUS_4           3                61
D53V10, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           1                70
  CLUS_2          11               152
  CLUS_3          16               213
D53V11, multiclass
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           7               118
  CLUS_2           7               104
  CLUS_3           6                85
D53V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS CNV          8   12
  7P LOSS WILD-TYPE  169  138
        clus
vv       7P LOSS CNV 7P LOSS WILD-TYPE
  CLUS_1           8               169
  CLUS_2          12               138

Clustering(54) Variable = 7q loss
D54V1, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           3                39
  CLUS_2           1                51
  CLUS_3           0                32
  CLUS_4           1                27
D54V2, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           1                21
  CLUS_2           1                55
  CLUS_3           2                21
  CLUS_4           1                52
D54V3, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           3               191
  CLUS_2           4               158
  CLUS_3           8               125
D54V4, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           2               140
  CLUS_2           4               110
  CLUS_3           4                95
D54V5, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           2                58
  CLUS_2           2                71
  CLUS_3           2                59
D54V6, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           2                56
  CLUS_2           2                45
  CLUS_3           2                47
  CLUS_4           0                40
D54V7, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           5               113
  CLUS_2           1               142
  CLUS_3           8               134
  CLUS_4           1                74
D54V8, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           4                89
  CLUS_2           1               139
  CLUS_3          10               235
D54V9, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           7               138
  CLUS_2           5               125
  CLUS_3           1               123
  CLUS_4           0                64
D54V10, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           0                71
  CLUS_2           4               159
  CLUS_3           9               220
D54V11, multiclass
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           4               121
  CLUS_2           5               106
  CLUS_3           1                90
D54V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS CNV          5    5
  7Q LOSS WILD-TYPE  172  145
        clus
vv       7Q LOSS CNV 7Q LOSS WILD-TYPE
  CLUS_1           5               172
  CLUS_2           5               145

Clustering(55) Variable = 8p loss
D55V1, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          12                30
  CLUS_2          14                38
  CLUS_3           5                27
  CLUS_4           8                20
D55V2, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1           6                16
  CLUS_2          14                42
  CLUS_3           6                17
  CLUS_4          13                40
D55V3, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          34               160
  CLUS_2          59               103
  CLUS_3          60                73
D55V4, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          26               116
  CLUS_2          49                65
  CLUS_3          42                57
D55V5, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          23                37
  CLUS_2          21                52
  CLUS_3          12                49
D55V6, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          19                39
  CLUS_2          11                36
  CLUS_3          15                34
  CLUS_4          11                29
D55V7, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          42                76
  CLUS_2          55                88
  CLUS_3          40               102
  CLUS_4          15                60
D55V8, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          30                63
  CLUS_2          53                87
  CLUS_3          69               176
D55V9, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          44               101
  CLUS_2          62                68
  CLUS_3          26                98
  CLUS_4          18                46
D55V10, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          21                50
  CLUS_2          58               105
  CLUS_3          71               158
D55V11, multiclass
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          53                72
  CLUS_2          35                76
  CLUS_3          25                66
D55V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS CNV         48   65
  8P LOSS WILD-TYPE  129   85
        clus
vv       8P LOSS CNV 8P LOSS WILD-TYPE
  CLUS_1          48               129
  CLUS_2          65                85

Clustering(56) Variable = 8q loss
D56V1, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           0                42
  CLUS_2           1                51
  CLUS_3           0                32
  CLUS_4           2                26
D56V2, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           2                20
  CLUS_2           1                55
  CLUS_3           0                23
  CLUS_4           0                53
D56V3, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           2               192
  CLUS_2           9               153
  CLUS_3           9               124
D56V4, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           2               140
  CLUS_2           9               105
  CLUS_3           6                93
D56V5, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           5                55
  CLUS_2           1                72
  CLUS_3           2                59
D56V6, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           4                54
  CLUS_2           3                44
  CLUS_3           0                49
  CLUS_4           1                39
D56V7, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           5               113
  CLUS_2           8               135
  CLUS_3           6               136
  CLUS_4           1                74
D56V8, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           5                88
  CLUS_2           7               133
  CLUS_3           8               237
D56V9, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           4               141
  CLUS_2          10               120
  CLUS_3           3               121
  CLUS_4           3                61
D56V10, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           5                66
  CLUS_2           7               156
  CLUS_3           8               221
D56V11, multiclass
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           9               116
  CLUS_2           5               106
  CLUS_3           3                88
D56V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS CNV          7   10
  8Q LOSS WILD-TYPE  170  140
        clus
vv       8Q LOSS CNV 8Q LOSS WILD-TYPE
  CLUS_1           7               170
  CLUS_2          10               140

Clustering(57) Variable = 9p loss
D57V1, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          24                18
  CLUS_2          21                31
  CLUS_3          10                22
  CLUS_4          11                17
D57V2, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1           7                15
  CLUS_2          22                34
  CLUS_3          14                 9
  CLUS_4          23                30
D57V3, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          48               146
  CLUS_2          58               104
  CLUS_3          87                46
D57V4, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          34               108
  CLUS_2          41                73
  CLUS_3          60                39
D57V5, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          24                36
  CLUS_2          30                43
  CLUS_3          26                35
D57V6, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          20                38
  CLUS_2          24                23
  CLUS_3          20                29
  CLUS_4          16                24
D57V7, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          59                59
  CLUS_2          47                96
  CLUS_3          59                83
  CLUS_4          23                52
D57V8, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          41                52
  CLUS_2          46                94
  CLUS_3         101               144
D57V9, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          58                87
  CLUS_2          69                61
  CLUS_3          31                93
  CLUS_4          25                39
D57V10, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          23                48
  CLUS_2          74                89
  CLUS_3          86               143
D57V11, multiclass
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          54                71
  CLUS_2          42                69
  CLUS_3          29                62
D57V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS CNV         66   59
  9P LOSS WILD-TYPE  111   91
        clus
vv       9P LOSS CNV 9P LOSS WILD-TYPE
  CLUS_1          66               111
  CLUS_2          59                91

Clustering(58) Variable = 9q loss
D58V1, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          19                23
  CLUS_2           6                46
  CLUS_3           9                23
  CLUS_4           9                19
D58V2, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           7                15
  CLUS_2           7                49
  CLUS_3          12                11
  CLUS_4          17                36
D58V3, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          35               159
  CLUS_2          20               142
  CLUS_3          75                58
D58V4, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          29               113
  CLUS_2          16                98
  CLUS_3          46                53
D58V5, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          16                44
  CLUS_2          20                53
  CLUS_3          16                45
D58V6, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          13                45
  CLUS_2          15                32
  CLUS_3          16                33
  CLUS_4           8                32
D58V7, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          45                73
  CLUS_2          11               132
  CLUS_3          49                93
  CLUS_4          21                54
D58V8, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          32                61
  CLUS_2          12               128
  CLUS_3          82               163
D58V9, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          36               109
  CLUS_2          53                77
  CLUS_3          27                97
  CLUS_4           7                57
D58V10, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1           9                62
  CLUS_2          59               104
  CLUS_3          55               174
D58V11, multiclass
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          34                91
  CLUS_2          33                78
  CLUS_3          20                71
D58V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS CNV         51   36
  9Q LOSS WILD-TYPE  126  114
        clus
vv       9Q LOSS CNV 9Q LOSS WILD-TYPE
  CLUS_1          51               126
  CLUS_2          36               114

Clustering(59) Variable = 10p loss
D59V1, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            8                 34
  CLUS_2           16                 36
  CLUS_3            2                 30
  CLUS_4            9                 19
D59V2, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1            4                 18
  CLUS_2           17                 39
  CLUS_3            7                 16
  CLUS_4            7                 46
D59V3, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           17                177
  CLUS_2           60                102
  CLUS_3           33                100
D59V4, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           12                130
  CLUS_2           46                 68
  CLUS_3           20                 79
D59V5, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           12                 48
  CLUS_2           15                 58
  CLUS_3           12                 49
D59V6, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2           15                 32
  CLUS_3            7                 42
  CLUS_4            7                 33
D59V7, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           19                 99
  CLUS_2           54                 89
  CLUS_3           27                115
  CLUS_4           10                 65
D59V8, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           20                 73
  CLUS_2           54                 86
  CLUS_3           36                209
D59V9, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           28                117
  CLUS_2           38                 92
  CLUS_3           10                114
  CLUS_4           28                 36
D59V10, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           28                 43
  CLUS_2           39                124
  CLUS_3           37                192
D59V11, multiclass
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           41                 84
  CLUS_2           14                 97
  CLUS_3           19                 72
D59V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS CNV         26   48
  10P LOSS WILD-TYPE  151  102
        clus
vv       10P LOSS CNV 10P LOSS WILD-TYPE
  CLUS_1           26                151
  CLUS_2           48                102

Clustering(60) Variable = 10q loss
D60V1, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            6                 36
  CLUS_2           19                 33
  CLUS_3            1                 31
  CLUS_4            6                 22
D60V2, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1            4                 18
  CLUS_2           21                 35
  CLUS_3            4                 19
  CLUS_4            3                 50
D60V3, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           15                179
  CLUS_2           63                 99
  CLUS_3           37                 96
D60V4, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           13                129
  CLUS_2           46                 68
  CLUS_3           27                 72
D60V5, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           15                 45
  CLUS_2           10                 63
  CLUS_3           11                 50
D60V6, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2           15                 32
  CLUS_3            3                 46
  CLUS_4            8                 32
D60V7, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           20                 98
  CLUS_2           58                 85
  CLUS_3           29                113
  CLUS_4            8                 67
D60V8, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           22                 71
  CLUS_2           58                 82
  CLUS_3           35                210
D60V9, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           24                121
  CLUS_2           44                 86
  CLUS_3           14                110
  CLUS_4           28                 36
D60V10, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           25                 46
  CLUS_2           45                118
  CLUS_3           40                189
D60V11, multiclass
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           45                 80
  CLUS_2           14                 97
  CLUS_3           23                 68
D60V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS CNV         27   55
  10Q LOSS WILD-TYPE  150   95
        clus
vv       10Q LOSS CNV 10Q LOSS WILD-TYPE
  CLUS_1           27                150
  CLUS_2           55                 95

Clustering(61) Variable = 11p loss
D61V1, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           11                 31
  CLUS_2            5                 47
  CLUS_3            2                 30
  CLUS_4            5                 23
D61V2, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            6                 16
  CLUS_2            5                 51
  CLUS_3            6                 17
  CLUS_4            6                 47
D61V3, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           13                181
  CLUS_2           30                132
  CLUS_3           37                 96
D61V4, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           12                130
  CLUS_2           19                 95
  CLUS_3           27                 72
D61V5, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           14                 46
  CLUS_2           12                 61
  CLUS_3            4                 57
D61V6, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           14                 44
  CLUS_2            3                 44
  CLUS_3           11                 38
  CLUS_4            2                 38
D61V7, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           25                 93
  CLUS_2           20                123
  CLUS_3           31                111
  CLUS_4            4                 71
D61V8, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           24                 69
  CLUS_2           21                119
  CLUS_3           35                210
D61V9, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           31                114
  CLUS_2           30                100
  CLUS_3           10                114
  CLUS_4            7                 57
D61V10, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1            8                 63
  CLUS_2           27                136
  CLUS_3           43                186
D61V11, multiclass
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           30                 95
  CLUS_2           17                 94
  CLUS_3            9                 82
D61V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS CNV         21   35
  11P LOSS WILD-TYPE  156  115
        clus
vv       11P LOSS CNV 11P LOSS WILD-TYPE
  CLUS_1           21                156
  CLUS_2           35                115

Clustering(62) Variable = 11q loss
D62V1, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            4                 38
  CLUS_2            5                 47
  CLUS_3            1                 31
  CLUS_4            3                 25
D62V2, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            2                 20
  CLUS_2            5                 51
  CLUS_3            2                 21
  CLUS_4            4                 49
D62V3, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            5                189
  CLUS_2           26                136
  CLUS_3           28                105
D62V4, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            8                134
  CLUS_2           15                 99
  CLUS_3           23                 76
D62V5, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            7                 53
  CLUS_2            5                 68
  CLUS_3            1                 60
D62V6, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            4                 54
  CLUS_2            4                 43
  CLUS_3            5                 44
  CLUS_4            0                 40
D62V7, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1           13                105
  CLUS_2           17                126
  CLUS_3           26                116
  CLUS_4            2                 73
D62V8, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1           18                 75
  CLUS_2           17                123
  CLUS_3           23                222
D62V9, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1           13                132
  CLUS_2           30                100
  CLUS_3            7                117
  CLUS_4            8                 56
D62V10, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1            7                 64
  CLUS_2           27                136
  CLUS_3           24                205
D62V11, multiclass
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1           25                100
  CLUS_2           11                100
  CLUS_3            9                 82
D62V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS CNV         15   30
  11Q LOSS WILD-TYPE  162  120
        clus
vv       11Q LOSS CNV 11Q LOSS WILD-TYPE
  CLUS_1           15                162
  CLUS_2           30                120

Clustering(63) Variable = 12p loss
D63V1, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 1                153 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4594         TCGA-22-4595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4607         TCGA-22-4613 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-34-2596         TCGA-34-2600 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5240         TCGA-34-5241 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-39-5011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5021         TCGA-39-5029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5034         TCGA-39-5035 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-43-2576 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-46-3765         TCGA-46-3766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-3767         TCGA-46-3768         TCGA-46-3769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2706         TCGA-60-2707 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2710         TCGA-60-2711 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2716         TCGA-60-2719 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
D63V2, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 1                153 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4594         TCGA-22-4595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4607         TCGA-22-4613 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-34-2596         TCGA-34-2600 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5240         TCGA-34-5241 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-39-5011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5021         TCGA-39-5029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5034         TCGA-39-5035 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-43-2576 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-46-3765         TCGA-46-3766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-46-3767         TCGA-46-3768         TCGA-46-3769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2706         TCGA-60-2707 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2710         TCGA-60-2711 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2716         TCGA-60-2719 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
D63V3, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            2                192
  CLUS_2            4                158
  CLUS_3            3                130
D63V4, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            1                141
  CLUS_2            2                112
  CLUS_3            5                 94
D63V5, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 1                193 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1078 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-21-5782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5784         TCGA-21-5786         TCGA-21-5787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-1000         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4596         TCGA-22-4605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5482         TCGA-22-5483 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5485         TCGA-22-5489         TCGA-22-5491 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5492         TCGA-33-4532         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2604         TCGA-34-2605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5241         TCGA-34-5927 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-5819 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5037         TCGA-39-5040 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-5668         TCGA-43-5670         TCGA-43-6143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-7656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7658         TCGA-46-6025         TCGA-46-6026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7730         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2708 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2709         TCGA-60-2710         TCGA-60-2711 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2724         TCGA-60-2725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-6202         TCGA-63-7020         TCGA-63-7021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-7022         TCGA-63-7023         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2737         TCGA-66-2758         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2781         TCGA-66-2782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2790         TCGA-66-2791         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-70-6722         TCGA-70-6723         TCGA-77-6842 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7141         TCGA-77-7142 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7335         TCGA-77-7337         TCGA-77-7338 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7463         TCGA-77-7465         TCGA-79-5596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6175         TCGA-85-6560         TCGA-85-6561 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6798         TCGA-85-7696         TCGA-85-7697 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7698         TCGA-85-7699         TCGA-85-7710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7843         TCGA-85-7844         TCGA-85-7950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-94-7033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7557         TCGA-94-7943         TCGA-96-7544 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-7454 
"12P LOSS WILD-TYPE" 
D63V6, multiclass
[1] "Remove cluster labels:" "12P LOSS CNV"          
clus
      12P LOSS CNV 12P LOSS WILD-TYPE 
                 1                193 
        TCGA-18-4721         TCGA-18-5592         TCGA-18-5595 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1078 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1079         TCGA-21-1080         TCGA-21-1081 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-1082         TCGA-21-1083         TCGA-21-5782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-21-5784         TCGA-21-5786         TCGA-21-5787 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-1000         TCGA-22-1011 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4596         TCGA-22-4605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-4607         TCGA-22-4609         TCGA-22-5471 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5472         TCGA-22-5473         TCGA-22-5474 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5477         TCGA-22-5478         TCGA-22-5479 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5480         TCGA-22-5482         TCGA-22-5483 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5485         TCGA-22-5489         TCGA-22-5491 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-22-5492         TCGA-33-4532         TCGA-33-4547 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4566         TCGA-33-4582         TCGA-33-4586 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-33-6737         TCGA-33-6738 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2596         TCGA-34-2604         TCGA-34-2605 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-2608         TCGA-34-2609         TCGA-34-5231 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5232         TCGA-34-5234         TCGA-34-5236 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5239         TCGA-34-5241         TCGA-34-5927 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-34-5928         TCGA-34-5929         TCGA-34-7107 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-3789         TCGA-37-3792         TCGA-37-4129 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-37-5819 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5011         TCGA-39-5016         TCGA-39-5019 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5021         TCGA-39-5022         TCGA-39-5024 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5027         TCGA-39-5028         TCGA-39-5029 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5031         TCGA-39-5034 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-39-5035         TCGA-39-5037         TCGA-39-5040 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-5668         TCGA-43-5670         TCGA-43-6143 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-6770         TCGA-43-6771         TCGA-43-7656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-43-7658         TCGA-46-6025         TCGA-46-6026 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-52-7810         TCGA-52-7811         TCGA-52-7812 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-5897         TCGA-56-5898         TCGA-56-6545 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-6546         TCGA-56-7221         TCGA-56-7222 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-56-7730         TCGA-60-2695         TCGA-60-2696 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2697         TCGA-60-2698         TCGA-60-2703 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2704         TCGA-60-2706         TCGA-60-2708 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2709         TCGA-60-2710         TCGA-60-2711 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2716         TCGA-60-2719         TCGA-60-2720 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2721         TCGA-60-2724         TCGA-60-2725 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-6202         TCGA-63-7020         TCGA-63-7021 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-63-7022         TCGA-63-7023         TCGA-66-2727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2737         TCGA-66-2758         TCGA-66-2766 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2773         TCGA-66-2777 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2778         TCGA-66-2781         TCGA-66-2782 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2783         TCGA-66-2785         TCGA-66-2788 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2790         TCGA-66-2791         TCGA-66-2794 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-66-2795         TCGA-66-2800         TCGA-68-7756 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-70-6722         TCGA-70-6723         TCGA-77-6842 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-6843         TCGA-77-6844         TCGA-77-6845 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7139         TCGA-77-7141         TCGA-77-7142 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7335         TCGA-77-7337         TCGA-77-7338 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-77-7463         TCGA-77-7465         TCGA-79-5596 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6175         TCGA-85-6560         TCGA-85-6561 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-6798         TCGA-85-7696         TCGA-85-7697 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7698         TCGA-85-7699         TCGA-85-7710 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-85-7843         TCGA-85-7844         TCGA-85-7950 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-6837         TCGA-90-7766         TCGA-90-7767 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-90-7769         TCGA-92-7340         TCGA-94-7033 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-94-7557         TCGA-94-7943         TCGA-96-7544 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-98-7454 
"12P LOSS WILD-TYPE" 
D63V7, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            2                116
  CLUS_2            3                140
  CLUS_3            3                139
  CLUS_4            1                 74
D63V8, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            3                 90
  CLUS_2            4                136
  CLUS_3            2                243
D63V9, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            2                143
  CLUS_2            6                124
  CLUS_3            1                123
  CLUS_4            0                 64
D63V10, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            0                 71
  CLUS_2            5                158
  CLUS_3            4                225
D63V11, multiclass
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            5                120
  CLUS_2            2                109
  CLUS_3            1                 90
D63V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS CNV          3    5
  12P LOSS WILD-TYPE  174  145
        clus
vv       12P LOSS CNV 12P LOSS WILD-TYPE
  CLUS_1            3                174
  CLUS_2            5                145

Clustering(64) Variable = 12q loss
D64V1, multiclass
[1] "Remove cluster labels:" "12Q LOSS CNV"          
clus
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 1                153 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4594         TCGA-22-4595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4607         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5240         TCGA-34-5241 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-39-5011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5021         TCGA-39-5029 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-43-2576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-46-3765         TCGA-46-3766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-3767         TCGA-46-3768         TCGA-46-3769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2710         TCGA-60-2711 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2716         TCGA-60-2719 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
D64V2, multiclass
[1] "Remove cluster labels:" "12Q LOSS CNV"          
clus
      12Q LOSS CNV 12Q LOSS WILD-TYPE 
                 1                153 
        TCGA-18-3406         TCGA-18-3407         TCGA-18-3408 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3409         TCGA-18-3410         TCGA-18-3411 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3412         TCGA-18-3414         TCGA-18-3415 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3416         TCGA-18-3417         TCGA-18-3419 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-18-3421         TCGA-18-4083         TCGA-18-4086 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1070         TCGA-21-1071         TCGA-21-1072 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1075         TCGA-21-1076         TCGA-21-1077 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1078         TCGA-21-1079         TCGA-21-1080 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-21-1081         TCGA-21-1082         TCGA-21-1083 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-0940         TCGA-22-0944         TCGA-22-1000 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1002         TCGA-22-1005         TCGA-22-1011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-1012         TCGA-22-1016         TCGA-22-1017 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4591         TCGA-22-4594         TCGA-22-4595 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4596         TCGA-22-4599         TCGA-22-4601 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-22-4604         TCGA-22-4607         TCGA-22-4613 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4532         TCGA-33-4533         TCGA-33-4538 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4547         TCGA-33-4566         TCGA-33-4582 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-33-4589         TCGA-34-2596         TCGA-34-2600 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2604         TCGA-34-2605         TCGA-34-2608 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-34-2609         TCGA-34-5240         TCGA-34-5241 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-3783         TCGA-37-3789         TCGA-37-3792 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4129         TCGA-37-4130         TCGA-37-4132 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-37-4133         TCGA-37-4135         TCGA-39-5011 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5016         TCGA-39-5021         TCGA-39-5029 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5030         TCGA-39-5034         TCGA-39-5035 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-39-5036         TCGA-39-5037         TCGA-43-2576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-2578         TCGA-43-2581         TCGA-43-3394 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-43-3920         TCGA-46-3765         TCGA-46-3766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-46-3767         TCGA-46-3768         TCGA-46-3769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-51-4079         TCGA-51-4080         TCGA-51-4081 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-56-1622         TCGA-60-2695         TCGA-60-2696 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2698         TCGA-60-2706         TCGA-60-2707 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2708         TCGA-60-2710         TCGA-60-2711 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2712         TCGA-60-2713         TCGA-60-2714 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2715         TCGA-60-2716         TCGA-60-2719 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2720         TCGA-60-2721         TCGA-60-2722 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2723         TCGA-60-2724         TCGA-60-2725 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-60-2726         TCGA-63-5128         TCGA-63-5131 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2727         TCGA-66-2734         TCGA-66-2737 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2742         TCGA-66-2744         TCGA-66-2753 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2754         TCGA-66-2755         TCGA-66-2756 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2757         TCGA-66-2758         TCGA-66-2759 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2763         TCGA-66-2765         TCGA-66-2766 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2767         TCGA-66-2768         TCGA-66-2769 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2770         TCGA-66-2771         TCGA-66-2773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2777         TCGA-66-2778         TCGA-66-2780 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2781         TCGA-66-2782         TCGA-66-2783 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2785         TCGA-66-2786         TCGA-66-2787 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2788         TCGA-66-2789         TCGA-66-2790 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2791         TCGA-66-2792         TCGA-66-2793 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-66-2794         TCGA-66-2795         TCGA-66-2800 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
D64V3, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            3                191
  CLUS_2            5                157
  CLUS_3            6                127
D64V4, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                141
  CLUS_2            6                108
  CLUS_3            6                 93
D64V5, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                 59
  CLUS_2            0                 73
  CLUS_3            2                 59
D64V6, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                 57
  CLUS_2            2                 45
  CLUS_3            0                 49
  CLUS_4            0                 40
D64V7, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            5                113
  CLUS_2            5                138
  CLUS_3            3                139
  CLUS_4            1                 74
D64V8, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            3                 90
  CLUS_2            6                134
  CLUS_3            5                240
D64V9, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            1                144
  CLUS_2            9                121
  CLUS_3            2                122
  CLUS_4            2                 62
D64V10, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            2                 69
  CLUS_2            9                154
  CLUS_3            3                226
D64V11, multiclass
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            5                120
  CLUS_2            5                106
  CLUS_3            3                 88
D64V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS CNV          6    7
  12Q LOSS WILD-TYPE  171  143
        clus
vv       12Q LOSS CNV 12Q LOSS WILD-TYPE
  CLUS_1            6                171
  CLUS_2            7                143

Clustering(65) Variable = 13q loss
D65V1, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           19                 23
  CLUS_2           22                 30
  CLUS_3            7                 25
  CLUS_4           13                 15
D65V2, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1            8                 14
  CLUS_2           24                 32
  CLUS_3           12                 11
  CLUS_4           17                 36
D65V3, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           43                151
  CLUS_2           65                 97
  CLUS_3           74                 59
D65V4, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           31                111
  CLUS_2           43                 71
  CLUS_3           54                 45
D65V5, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           28                 32
  CLUS_2           22                 51
  CLUS_3           22                 39
D65V6, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           25                 33
  CLUS_2           19                 28
  CLUS_3           14                 35
  CLUS_4           14                 26
D65V7, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           41                 77
  CLUS_2           59                 84
  CLUS_3           55                 87
  CLUS_4           26                 49
D65V8, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           40                 53
  CLUS_2           58                 82
  CLUS_3           83                162
D65V9, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           55                 90
  CLUS_2           64                 66
  CLUS_3           27                 97
  CLUS_4           28                 36
D65V10, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           27                 44
  CLUS_2           72                 91
  CLUS_3           75                154
D65V11, multiclass
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           61                 64
  CLUS_2           33                 78
  CLUS_3           25                 66
D65V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS CNV         47   72
  13Q LOSS WILD-TYPE  130   78
        clus
vv       13Q LOSS CNV 13Q LOSS WILD-TYPE
  CLUS_1           47                130
  CLUS_2           72                 78

Clustering(66) Variable = 14q loss
D66V1, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            1                 41
  CLUS_2           12                 40
  CLUS_3            4                 28
  CLUS_4            9                 19
D66V2, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            6                 16
  CLUS_2           14                 42
  CLUS_3            1                 22
  CLUS_4            5                 48
D66V3, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           19                175
  CLUS_2           40                122
  CLUS_3           27                106
D66V4, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           17                125
  CLUS_2           24                 90
  CLUS_3           22                 77
D66V5, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           18                 42
  CLUS_2            9                 64
  CLUS_3           12                 49
D66V6, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           16                 42
  CLUS_2           13                 34
  CLUS_3            5                 44
  CLUS_4            5                 35
D66V7, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1            6                112
  CLUS_2           31                112
  CLUS_3           45                 97
  CLUS_4            4                 71
D66V8, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           38                 55
  CLUS_2           32                108
  CLUS_3           16                229
D66V9, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           25                120
  CLUS_2           22                108
  CLUS_3           10                114
  CLUS_4           24                 40
D66V10, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           21                 50
  CLUS_2           27                136
  CLUS_3           33                196
D66V11, multiclass
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           26                 99
  CLUS_2           13                 98
  CLUS_3           19                 72
D66V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS CNV         25   33
  14Q LOSS WILD-TYPE  152  117
        clus
vv       14Q LOSS CNV 14Q LOSS WILD-TYPE
  CLUS_1           25                152
  CLUS_2           33                117

Clustering(67) Variable = 15q loss
D67V1, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            6                 36
  CLUS_2            8                 44
  CLUS_3            4                 28
  CLUS_4            6                 22
D67V2, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            8                 14
  CLUS_2            9                 47
  CLUS_3            4                 19
  CLUS_4            3                 50
D67V3, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           13                181
  CLUS_2           21                141
  CLUS_3           27                106
D67V4, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            7                135
  CLUS_2           10                104
  CLUS_3           24                 75
D67V5, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           14                 46
  CLUS_2            5                 68
  CLUS_3            4                 57
D67V6, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           13                 45
  CLUS_2            7                 40
  CLUS_3            3                 46
  CLUS_4            0                 40
D67V7, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           17                101
  CLUS_2           15                128
  CLUS_3           23                119
  CLUS_4            6                 69
D67V8, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           21                 72
  CLUS_2           14                126
  CLUS_3           26                219
D67V9, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           22                123
  CLUS_2           20                110
  CLUS_3            9                115
  CLUS_4            8                 56
D67V10, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1            7                 64
  CLUS_2           25                138
  CLUS_3           27                202
D67V11, multiclass
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           16                109
  CLUS_2           14                 97
  CLUS_3            7                 84
D67V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS CNV         19   18
  15Q LOSS WILD-TYPE  158  132
        clus
vv       15Q LOSS CNV 15Q LOSS WILD-TYPE
  CLUS_1           19                158
  CLUS_2           18                132

Clustering(68) Variable = 16p loss
D68V1, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            5                 37
  CLUS_2            9                 43
  CLUS_3            3                 29
  CLUS_4            4                 24
D68V2, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            0                 22
  CLUS_2           10                 46
  CLUS_3            4                 19
  CLUS_4            7                 46
D68V3, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           15                179
  CLUS_2           25                137
  CLUS_3           33                100
D68V4, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           15                127
  CLUS_2           17                 97
  CLUS_3           24                 75
D68V5, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           13                 47
  CLUS_2           11                 62
  CLUS_3            8                 53
D68V6, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           12                 46
  CLUS_2            9                 38
  CLUS_3            8                 41
  CLUS_4            3                 37
D68V7, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           17                101
  CLUS_2           22                121
  CLUS_3           26                116
  CLUS_4            7                 68
D68V8, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           22                 71
  CLUS_2           21                119
  CLUS_3           29                216
D68V9, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           20                125
  CLUS_2           29                101
  CLUS_3           11                113
  CLUS_4           10                 54
D68V10, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1            9                 62
  CLUS_2           34                129
  CLUS_3           27                202
D68V11, multiclass
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           23                102
  CLUS_2           14                 97
  CLUS_3           14                 77
D68V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS CNV         24   27
  16P LOSS WILD-TYPE  153  123
        clus
vv       16P LOSS CNV 16P LOSS WILD-TYPE
  CLUS_1           24                153
  CLUS_2           27                123

Clustering(69) Variable = 16q loss
D69V1, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            8                 34
  CLUS_2           12                 40
  CLUS_3            2                 30
  CLUS_4            6                 22
D69V2, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1            2                 20
  CLUS_2           13                 43
  CLUS_3            5                 18
  CLUS_4            8                 45
D69V3, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           22                172
  CLUS_2           38                124
  CLUS_3           35                 98
D69V4, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           19                123
  CLUS_2           20                 94
  CLUS_3           29                 70
D69V5, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           16                 44
  CLUS_2           10                 63
  CLUS_3           11                 50
D69V6, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           13                 45
  CLUS_2           13                 34
  CLUS_3            5                 44
  CLUS_4            6                 34
D69V7, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           21                 97
  CLUS_2           29                114
  CLUS_3           37                105
  CLUS_4            7                 68
D69V8, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           30                 63
  CLUS_2           30                110
  CLUS_3           34                211
D69V9, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           26                119
  CLUS_2           36                 94
  CLUS_3           10                114
  CLUS_4           18                 46
D69V10, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           13                 58
  CLUS_2           45                118
  CLUS_3           32                197
D69V11, multiclass
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           36                 89
  CLUS_2           10                101
  CLUS_3           20                 71
D69V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS CNV         22   44
  16Q LOSS WILD-TYPE  155  106
        clus
vv       16Q LOSS CNV 16Q LOSS WILD-TYPE
  CLUS_1           22                155
  CLUS_2           44                106

Clustering(70) Variable = 17p loss
D70V1, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           21                 21
  CLUS_2           17                 35
  CLUS_3            9                 23
  CLUS_4            7                 21
D70V2, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1            9                 13
  CLUS_2           18                 38
  CLUS_3           11                 12
  CLUS_4           16                 37
D70V3, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           51                143
  CLUS_2           59                103
  CLUS_3           69                 64
D70V4, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           37                105
  CLUS_2           44                 70
  CLUS_3           48                 51
D70V5, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           29                 31
  CLUS_2           20                 53
  CLUS_3           15                 46
D70V6, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           26                 32
  CLUS_2           16                 31
  CLUS_3           14                 35
  CLUS_4            8                 32
D70V7, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           51                 67
  CLUS_2           46                 97
  CLUS_3           54                 88
  CLUS_4           27                 48
D70V8, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           40                 53
  CLUS_2           47                 93
  CLUS_3           91                154
D70V9, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           61                 84
  CLUS_2           55                 75
  CLUS_3           34                 90
  CLUS_4           24                 40
D70V10, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           21                 50
  CLUS_2           62                101
  CLUS_3           91                138
D70V11, multiclass
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           51                 74
  CLUS_2           39                 72
  CLUS_3           33                 58
D70V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS CNV         60   63
  17P LOSS WILD-TYPE  117   87
        clus
vv       17P LOSS CNV 17P LOSS WILD-TYPE
  CLUS_1           60                117
  CLUS_2           63                 87

Clustering(71) Variable = 17q loss
D71V1, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            4                 38
  CLUS_2            1                 51
  CLUS_3            3                 29
  CLUS_4            1                 27
D71V2, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            2                 20
  CLUS_2            1                 55
  CLUS_3            3                 20
  CLUS_4            3                 50
D71V3, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           12                182
  CLUS_2            7                155
  CLUS_3           13                120
D71V4, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           11                131
  CLUS_2            1                113
  CLUS_3           12                 87
D71V5, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            4                 56
  CLUS_2            5                 68
  CLUS_3            1                 60
D71V6, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            4                 54
  CLUS_2            2                 45
  CLUS_3            2                 47
  CLUS_4            2                 38
D71V7, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           13                105
  CLUS_2            3                140
  CLUS_3            7                135
  CLUS_4            9                 66
D71V8, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            6                 87
  CLUS_2            3                137
  CLUS_3           23                222
D71V9, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            9                136
  CLUS_2           10                120
  CLUS_3            7                117
  CLUS_4            6                 58
D71V10, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            4                 67
  CLUS_2           12                151
  CLUS_3           16                213
D71V11, multiclass
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1            7                118
  CLUS_2            9                102
  CLUS_3            7                 84
D71V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS CNV         14    9
  17Q LOSS WILD-TYPE  163  141
        clus
vv       17Q LOSS CNV 17Q LOSS WILD-TYPE
  CLUS_1           14                163
  CLUS_2            9                141

Clustering(72) Variable = 18p loss
D72V1, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            5                 37
  CLUS_2            8                 44
  CLUS_3            6                 26
  CLUS_4            1                 27
D72V2, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            3                 19
  CLUS_2            8                 48
  CLUS_3            3                 20
  CLUS_4            6                 47
D72V3, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           15                179
  CLUS_2           15                147
  CLUS_3           27                106
D72V4, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           12                130
  CLUS_2           13                101
  CLUS_3           12                 87
D72V5, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            8                 52
  CLUS_2            3                 70
  CLUS_3            7                 54
D72V6, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            6                 52
  CLUS_2            5                 42
  CLUS_3            3                 46
  CLUS_4            4                 36
D72V7, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           16                102
  CLUS_2           14                129
  CLUS_3           16                126
  CLUS_4           11                 64
D72V8, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           10                 83
  CLUS_2           13                127
  CLUS_3           34                211
D72V9, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           19                126
  CLUS_2           20                110
  CLUS_3            9                115
  CLUS_4            7                 57
D72V10, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1            7                 64
  CLUS_2           22                141
  CLUS_3           26                203
D72V11, multiclass
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           17                108
  CLUS_2           12                 99
  CLUS_3            8                 83
D72V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS CNV         21   16
  18P LOSS WILD-TYPE  156  134
        clus
vv       18P LOSS CNV 18P LOSS WILD-TYPE
  CLUS_1           21                156
  CLUS_2           16                134

Clustering(73) Variable = 18q loss
D73V1, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           10                 32
  CLUS_2           10                 42
  CLUS_3            7                 25
  CLUS_4            3                 25
D73V2, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            3                 19
  CLUS_2           10                 46
  CLUS_3            6                 17
  CLUS_4           11                 42
D73V3, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           22                172
  CLUS_2           35                127
  CLUS_3           37                 96
D73V4, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           19                123
  CLUS_2           27                 87
  CLUS_3           19                 80
D73V5, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           14                 46
  CLUS_2           14                 59
  CLUS_3            7                 54
D73V6, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1            9                 49
  CLUS_2            8                 39
  CLUS_3           11                 38
  CLUS_4            7                 33
D73V7, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           24                 94
  CLUS_2           28                115
  CLUS_3           24                118
  CLUS_4           18                 57
D73V8, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           13                 80
  CLUS_2           24                116
  CLUS_3           57                188
D73V9, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           32                113
  CLUS_2           30                100
  CLUS_3           19                105
  CLUS_4           10                 54
D73V10, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           11                 60
  CLUS_2           33                130
  CLUS_3           47                182
D73V11, multiclass
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           28                 97
  CLUS_2           19                 92
  CLUS_3           16                 75
D73V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS CNV         34   29
  18Q LOSS WILD-TYPE  143  121
        clus
vv       18Q LOSS CNV 18Q LOSS WILD-TYPE
  CLUS_1           34                143
  CLUS_2           29                121

Clustering(74) Variable = 19p loss
D74V1, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            5                 37
  CLUS_2            4                 48
  CLUS_3            4                 28
  CLUS_4           10                 18
D74V2, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            8                 14
  CLUS_2            4                 52
  CLUS_3            2                 21
  CLUS_4            9                 44
D74V3, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           22                172
  CLUS_2           16                146
  CLUS_3           38                 95
D74V4, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           20                122
  CLUS_2           16                 98
  CLUS_3           20                 79
D74V5, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           11                 49
  CLUS_2           12                 61
  CLUS_3            9                 52
D74V6, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           11                 47
  CLUS_2            8                 39
  CLUS_3            8                 41
  CLUS_4            5                 35
D74V7, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           15                103
  CLUS_2           10                133
  CLUS_3           36                106
  CLUS_4           14                 61
D74V8, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           27                 66
  CLUS_2           12                128
  CLUS_3           36                209
D74V9, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           24                121
  CLUS_2           28                102
  CLUS_3           14                110
  CLUS_4            5                 59
D74V10, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1            2                 69
  CLUS_2           38                125
  CLUS_3           31                198
D74V11, multiclass
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           19                106
  CLUS_2           18                 93
  CLUS_3           15                 76
D74V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS CNV         27   25
  19P LOSS WILD-TYPE  150  125
        clus
vv       19P LOSS CNV 19P LOSS WILD-TYPE
  CLUS_1           27                150
  CLUS_2           25                125

Clustering(75) Variable = 19q loss
D75V1, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            2                 40
  CLUS_2            5                 47
  CLUS_3            4                 28
  CLUS_4            5                 23
D75V2, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            4                 18
  CLUS_2            6                 50
  CLUS_3            1                 22
  CLUS_4            5                 48
D75V3, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           12                182
  CLUS_2           19                143
  CLUS_3           18                115
D75V4, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            9                133
  CLUS_2           11                103
  CLUS_3           14                 85
D75V5, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           11                 49
  CLUS_2            5                 68
  CLUS_3            3                 58
D75V6, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2            5                 42
  CLUS_3            2                 47
  CLUS_4            2                 38
D75V7, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           13                105
  CLUS_2           14                129
  CLUS_3           14                128
  CLUS_4            8                 67
D75V8, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           10                 83
  CLUS_2           15                125
  CLUS_3           24                221
D75V9, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           15                130
  CLUS_2           18                112
  CLUS_3            7                117
  CLUS_4            6                 58
D75V10, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1            5                 66
  CLUS_2           18                145
  CLUS_3           23                206
D75V11, multiclass
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           17                108
  CLUS_2            9                102
  CLUS_3            6                 85
D75V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS CNV         13   19
  19Q LOSS WILD-TYPE  164  131
        clus
vv       19Q LOSS CNV 19Q LOSS WILD-TYPE
  CLUS_1           13                164
  CLUS_2           19                131

Clustering(76) Variable = 20p loss
D76V1, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            1                 41
  CLUS_2            2                 50
  CLUS_3            2                 30
  CLUS_4            4                 24
D76V2, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            4                 18
  CLUS_2            2                 54
  CLUS_3            1                 22
  CLUS_4            2                 51
D76V3, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            7                187
  CLUS_2            4                158
  CLUS_3            9                124
D76V4, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            3                139
  CLUS_2            2                112
  CLUS_3            7                 92
D76V5, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            7                 53
  CLUS_2            2                 71
  CLUS_3            2                 59
D76V6, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            4                 54
  CLUS_2            4                 43
  CLUS_3            2                 47
  CLUS_4            1                 39
D76V7, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            8                110
  CLUS_2            4                139
  CLUS_3            6                136
  CLUS_4            2                 73
D76V8, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            4                 89
  CLUS_2            4                136
  CLUS_3           12                233
D76V9, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1           10                135
  CLUS_2            5                125
  CLUS_3            2                122
  CLUS_4            3                 61
D76V10, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            3                 68
  CLUS_2            5                158
  CLUS_3           12                217
D76V11, multiclass
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            5                120
  CLUS_2            3                108
  CLUS_3            2                 89
D76V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS CNV          3    7
  20P LOSS WILD-TYPE  174  143
        clus
vv       20P LOSS CNV 20P LOSS WILD-TYPE
  CLUS_1            3                174
  CLUS_2            7                143

Clustering(77) Variable = 20q loss
D77V1, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            0                 42
  CLUS_2            7                 45
  CLUS_3            0                 32
  CLUS_4            1                 27
D77V2, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            1                 21
  CLUS_2            7                 49
  CLUS_3            0                 23
  CLUS_4            0                 53
D77V3, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            6                188
  CLUS_2           16                146
  CLUS_3            2                131
D77V4, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            5                137
  CLUS_2            9                105
  CLUS_3            4                 95
D77V5, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            5                 55
  CLUS_2            1                 72
  CLUS_3            3                 58
D77V6, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            3                 55
  CLUS_2            4                 43
  CLUS_3            1                 48
  CLUS_4            1                 39
D77V7, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            3                115
  CLUS_2           17                126
  CLUS_3            3                139
  CLUS_4            1                 74
D77V8, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            3                 90
  CLUS_2           16                124
  CLUS_3            5                240
D77V9, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1           11                134
  CLUS_2            8                122
  CLUS_3            1                123
  CLUS_4            4                 60
D77V10, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            7                 64
  CLUS_2            6                157
  CLUS_3           11                218
D77V11, multiclass
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            8                117
  CLUS_2            4                107
  CLUS_3            2                 89
D77V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS CNV          5    9
  20Q LOSS WILD-TYPE  172  141
        clus
vv       20Q LOSS CNV 20Q LOSS WILD-TYPE
  CLUS_1            5                172
  CLUS_2            9                141

Clustering(78) Variable = 21q loss
D78V1, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           17                 25
  CLUS_2           25                 27
  CLUS_3            5                 27
  CLUS_4            9                 19
D78V2, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1            5                 17
  CLUS_2           28                 28
  CLUS_3            7                 16
  CLUS_4           16                 37
D78V3, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           26                168
  CLUS_2           71                 91
  CLUS_3           54                 79
D78V4, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           21                121
  CLUS_2           41                 73
  CLUS_3           40                 59
D78V5, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           23                 37
  CLUS_2           20                 53
  CLUS_3           15                 46
D78V6, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           19                 39
  CLUS_2           18                 29
  CLUS_3           14                 35
  CLUS_4            7                 33
D78V7, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           35                 83
  CLUS_2           57                 86
  CLUS_3           40                102
  CLUS_4           17                 58
D78V8, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           29                 64
  CLUS_2           56                 84
  CLUS_3           64                181
D78V9, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           56                 89
  CLUS_2           49                 81
  CLUS_3           21                103
  CLUS_4           19                 45
D78V10, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           19                 52
  CLUS_2           62                101
  CLUS_3           64                165
D78V11, multiclass
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           44                 81
  CLUS_2           26                 85
  CLUS_3           23                 68
D78V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS CNV         39   54
  21Q LOSS WILD-TYPE  138   96
        clus
vv       21Q LOSS CNV 21Q LOSS WILD-TYPE
  CLUS_1           39                138
  CLUS_2           54                 96

Clustering(79) Variable = 22q loss
D79V1, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            5                 37
  CLUS_2            3                 49
  CLUS_3            2                 30
  CLUS_4            7                 21
D79V2, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            6                 16
  CLUS_2            4                 52
  CLUS_3            3                 20
  CLUS_4            4                 49
D79V3, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           19                175
  CLUS_2           12                150
  CLUS_3           17                116
D79V4, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           14                128
  CLUS_2            7                107
  CLUS_3           11                 88
D79V5, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            8                 52
  CLUS_2            8                 65
  CLUS_3            4                 57
D79V6, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           10                 48
  CLUS_2            3                 44
  CLUS_3            5                 44
  CLUS_4            2                 38
D79V7, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           13                105
  CLUS_2            7                136
  CLUS_3           21                121
  CLUS_4            6                 69
D79V8, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           16                 77
  CLUS_2            8                132
  CLUS_3           23                222
D79V9, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           15                130
  CLUS_2           15                115
  CLUS_3           10                114
  CLUS_4            2                 62
D79V10, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1            3                 68
  CLUS_2           19                144
  CLUS_3           20                209
D79V11, multiclass
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           14                111
  CLUS_2            6                105
  CLUS_3           10                 81
D79V12, binary
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS CNV         12   18
  22Q LOSS WILD-TYPE  165  132
        clus
vv       22Q LOSS CNV 22Q LOSS WILD-TYPE
  CLUS_1           12                165
  CLUS_2           18                132

Clustering(80) Variable = Xq loss
D80V1, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           2                40
  CLUS_2           3                49
  CLUS_3           0                32
  CLUS_4           2                26
D80V2, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           0                22
  CLUS_2           3                53
  CLUS_3           2                21
  CLUS_4           2                51
D80V3, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           6               188
  CLUS_2           7               155
  CLUS_3          13               120
D80V4, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           4               138
  CLUS_2           5               109
  CLUS_3          11                88
D80V5, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           3                57
  CLUS_2           2                71
  CLUS_3           4                57
D80V6, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           0                58
  CLUS_2           7                40
  CLUS_3           2                47
  CLUS_4           0                40
D80V7, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           7               111
  CLUS_2           5               138
  CLUS_3          12               130
  CLUS_4           2                73
D80V8, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           9                84
  CLUS_2           4               136
  CLUS_3          13               232
D80V9, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           6               139
  CLUS_2          15               115
  CLUS_3           3               121
  CLUS_4           1                63
D80V10, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           2                69
  CLUS_2          12               151
  CLUS_3          11               218
D80V11, multiclass
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1          13               112
  CLUS_2           5               106
  CLUS_3           1                90
D80V12, binary
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS CNV          8   11
  XQ LOSS WILD-TYPE  169  139
        clus
vv       XQ LOSS CNV XQ LOSS WILD-TYPE
  CLUS_1           8               169
  CLUS_2          11               139
                           V1                            V2 
                  "MRNA_CNMF"          "MRNA_CHIERARCHICAL" 
                           V3                            V4 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V5                            V6 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V7                            V8 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V9                           V10 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                          V11                           V12 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
