Pipeline Input Name	Archive Result File REF	Comment [TCGA Archive Name]	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
exonFile	OV-TP.exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_exon__huex_1_0_st_v2__lbl_gov__Level_3__quantile_normalization_gene__data.Level_3.2013092300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00374:36	mRNA_Preprocess_Median_2013092300	OV-TP.medianexp.txt	Median-Expression_Gene	Level_4	text	gdac.broadinstitute.org_OV-TP.mRNA_Preprocess_Median.Level_4.2013092300.0.0	yes
broadFile	OV-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.Level_3.2013092300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00374:36	mRNA_Preprocess_Median_2013092300	OV-TP.medianexp.txt	Median-Expression_Gene	Level_4	text	gdac.broadinstitute.org_OV-TP.mRNA_Preprocess_Median.Level_4.2013092300.0.0	yes
uncFile	OV-TP.transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.data.txt	gdac.broadinstitute.org_OV-TP.Merge_transcriptome__agilentg4502a_07_3__unc_edu__Level_3__unc_lowess_normalization_gene_level__data.Level_3.2013092300.1.0	urn:lsid:broadinstitute.org:cancer.genome.analysis:00374:36	mRNA_Preprocess_Median_2013092300	OV-TP.medianexp.txt	Median-Expression_Gene	Level_4	text	gdac.broadinstitute.org_OV-TP.mRNA_Preprocess_Median.Level_4.2013092300.0.0	yes
