Unique Name	Descriptor	Wide Peak Limits	Peak Limits	Region Limits	q values	Residual q values after removing segments shared with higher peaks	Broad or Focal	Amplitude Threshold	TCGA-F2-6879-01A-11D-2153-01	TCGA-F2-6880-01A-11D-2153-01	TCGA-F2-7273-01A-11D-2153-01	TCGA-F2-7276-01A-11D-2153-01	TCGA-F2-A44G-01A-11D-A26H-01	TCGA-F2-A44H-01A-11D-A26H-01	TCGA-FB-A4P5-01A-11D-A26H-01	TCGA-FB-A545-01A-11D-A26H-01	TCGA-FZ-5919-01A-11D-1608-01	TCGA-FZ-5920-01A-11D-1608-01	TCGA-FZ-5921-01A-11D-1608-01	TCGA-FZ-5922-01A-11D-1608-01	TCGA-FZ-5923-01A-12D-1608-01	TCGA-FZ-5924-01A-13D-1608-01	TCGA-FZ-5926-01A-11D-1608-01	TCGA-H6-8124-01A-11D-2392-01	TCGA-H6-A45N-01A-11D-A26H-01	TCGA-HV-A5A3-01A-11D-A26H-01	TCGA-HV-A5A4-01A-11D-A26H-01	TCGA-HV-A5A5-01A-11D-A26H-01	TCGA-HV-A5A6-01A-11D-A26H-01	TCGA-HZ-7289-01A-11D-2153-01	TCGA-HZ-7918-01A-11D-2153-01	TCGA-HZ-7919-01A-11D-2153-01	TCGA-HZ-7920-01A-11D-2200-01	TCGA-HZ-7922-01A-11D-2153-01	TCGA-HZ-7923-01A-12D-2153-01	TCGA-HZ-7924-01A-11D-2153-01	TCGA-HZ-7925-01A-11D-2153-01	TCGA-HZ-7926-01A-11D-2153-01	TCGA-HZ-8001-01A-11D-2200-01	TCGA-HZ-8002-01A-11D-2200-01	TCGA-HZ-8003-01A-21D-2200-01	TCGA-HZ-8005-01A-11D-2200-01	TCGA-HZ-8315-01A-11D-2392-01	TCGA-HZ-8317-01A-11D-2392-01	TCGA-HZ-8519-01A-11D-2392-01	TCGA-HZ-8636-01A-21D-2392-01	TCGA-HZ-8637-01A-11D-2392-01	TCGA-HZ-8638-01A-11D-2392-01	TCGA-HZ-A49G-01A-11D-A26H-01	TCGA-HZ-A49H-01A-11D-A26H-01	TCGA-HZ-A49I-01A-12D-A26H-01	TCGA-HZ-A4BH-01A-11D-A26H-01	TCGA-HZ-A4BK-01A-11D-A26H-01	TCGA-IB-7644-01A-11D-2153-01	TCGA-IB-7645-01A-22D-2200-01	TCGA-IB-7646-01A-11D-2153-01	TCGA-IB-7647-01A-11D-2153-01	TCGA-IB-7649-01A-11D-2153-01	TCGA-IB-7651-01A-11D-2153-01	TCGA-IB-7652-01A-11D-2153-01	TCGA-IB-7654-01A-11D-2153-01	TCGA-IB-7885-01A-11D-2153-01	TCGA-IB-7886-01A-11D-2153-01	TCGA-IB-7887-01A-11D-2153-01	TCGA-IB-7888-01A-11D-2153-01	TCGA-IB-7889-01A-11D-2153-01	TCGA-IB-7890-01A-12D-2200-01	TCGA-IB-7891-01A-11D-2200-01	TCGA-IB-7893-01A-11D-2200-01	TCGA-IB-7897-01A-21D-2200-01	TCGA-IB-8126-01A-11D-2392-01	TCGA-IB-8127-01A-11D-2392-01	TCGA-M8-A5N4-01A-11D-A26H-01	
Amplification Peak  1	1p34.2  	chr1:37413199-44557362(probes 17955:21959)        	chr1:41107240-42223908(probes 19871:20531)        	chr1:41107240-42227600(probes 19871:20534)        	0.19492	    0.19492		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  2	1p12    	chr1:120033150-120523901(probes 67544:67828)    	chr1:120033850-120522600(probes 67545:67827)    	chr1:120033850-120527360(probes 67545:67830)    	0.058099	   0.058099		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	1	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	1	
Amplification Peak  3	7q22.1  	chr7:97888086-100214486(probes 716809:717691)    	chr7:99137189-99176019(probes 717308:717318)      	chr7:97524031-100224010(probes 716668:717693)    	0.034237	   0.034237		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	2	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	2	0	0	1	0	0	0	0	1	0	0	0	0	0	1	1	0	1	0	0	1	1	
Amplification Peak  4	8q24.21 	chr8:127864635-128801947(probes 819175:819891)  	chr8:128107201-128800300(probes 819382:819890)  	chr8:127865120-128809606(probes 819176:819893)  	0.034237	   0.034237		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	2	0	0	2	1	1	0	0	1	0	0	1	0	0	0	0	2	1	0	0	1	1	0	0	0	0	0	0	0	0	1	1	1	0	1	1	0	1	0	0	1	1	0	1	0	0	1	1	
Amplification Peak  5	9p13.3  	chr9:34541740-36088376(probes 850574:851368)      	chr9:35245314-35291844(probes 850952:850969)      	chr9:35245314-35297424(probes 850952:850972)      	0.24712	    0.24712		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	
Amplification Peak  6	11p11.2 	chr11:46068136-46086726(probes 1007868:1007876)  	chr11:46069665-46082094(probes 1007869:1007875)  	chr11:46069665-46087487(probes 1007869:1007878)  	0.18317	    0.18317		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	
Amplification Peak  7	12p13.33	chr12:1-5520802(probes 1056069:1058898)             	chr12:1-2272875(probes 1056069:1056491)             	chr12:1-2276946(probes 1056069:1056494)             	0.19062	    0.19062		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	1	0	
Amplification Peak  8	12p11.21	chr12:31414318-31442221(probes 1074372:1074383)  	chr12:31414474-31440450(probes 1074373:1074382)  	chr12:30846561-32183698(probes 1074061:1074757)  	0.0086376	  0.0086376		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	1	0	0	2	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	2	2	0	0	1	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	1	0	
Amplification Peak  9	12q15   	chr12:68307608-70989876(probes 1092009:1093890)  	chr12:68393163-68418829(probes 1092082:1092104)  	chr12:68310485-70992716(probes 1092010:1093892)  	0.014023	   0.014023		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 10	17p11.2 	chr17:18097231-18598782(probes 1330180:1330296)  	chr17:18098196-18289032(probes 1330181:1330278)  	chr17:18098196-18602475(probes 1330181:1330298)  	0.14465	    0.14465		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	
Amplification Peak 11	17q21.33	chr17:50046018-50067847(probes 1342075:1342086)  	chr17:50048924-50067238(probes 1342076:1342085)  	chr17:50048924-50071512(probes 1342076:1342088)  	0.19062	    0.19062		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	1	1	0	0	0	0	
Amplification Peak 12	18q11.2 	chr18:19826724-19972386(probes 1367274:1367363)  	chr18:19826743-19876380(probes 1367275:1367305)  	chr18:18694023-22471383(probes 1366780:1368953)  	1.4569e-06	 1.4569e-06		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	0	1	0	0	1	0	0	1	0	2	0	0	2	0	0	1	0	2	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	0	0	0	1	0	0	1	0	2	0	0	0	0	0	1	0	2	1	0	
Amplification Peak 13	19q13.13	chr19:38216998-40880126(probes 1416624:1417941)  	chr19:38514319-38644644(probes 1416784:1416868)  	chr19:38514319-39186949(probes 1416784:1417120)  	0.086108	   0.086108		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	0	1	0	1	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	2	0	0	1	0	
Amplification Peak 14	20q13.2 	chr20:51093677-52298532(probes 1454899:1455693)  	chr20:51395648-51437828(probes 1455129:1455154)  	chr20:51093874-51645373(probes 1454900:1455266)  	0.10406	    0.10406		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	1	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	1	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	0	0	1	2	0	0	0	1	0	1	0	0	0	1	0	0	0	0	1	0	
Amplification Peak 15	Xp22.11 	chrX:23975644-23983593(probes 1508820:1508827)    	chrX:23976894-23983115(probes 1508821:1508826)    	chrX:23976894-23993915(probes 1508821:1508829)    	0.012188	   0.012188		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Amplification Peak 16	Xq27.1  	chrX:138564705-138580557(probes 1556908:1556914)	chrX:138564964-138580376(probes 1556909:1556913)	chrX:138564964-138580758(probes 1556909:1556916)	0.0092628	  0.0092628		0: t<0.1; 1: 0.1<t< 0.9; 2: t>0.9	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak  1	1p36.22 	chr1:1-36027453(probes 1:17233)                    	chr1:10263148-10447791(probes 3991:4095)            	chr1:10352962-10357405(probes 4044:4045)            	0.055123	    0.10428		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	1	1	0	0	0	0	1	1	
Deletion Peak  2	1p36.11 	chr1:1-38233398(probes 1:18402)                    	chr1:27101202-27341204(probes 12761:12835)          	chr1:20791181-30837979(probes 9686:14472)           	0.048136	    0.18337		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	1	0	0	1	1	0	1	0	0	1	0	
Deletion Peak  3	1p21.2  	chr1:97542480-101370921(probes 54420:56717)      	chr1:100101193-100161103(probes 55948:55986)      	chr1:100143393-100146430(probes 55968:55969)      	0.05486	    0.14154		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	1	0	
Deletion Peak  4	5q14.2  	chr5:72858984-110850818(probes 508198:528140)    	chr5:82345108-82375782(probes 513937:513957)        	chr5:82246120-82446119(probes 513872:514007)        	0.048136	    0.10428		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	
Deletion Peak  5	5q15    	chr5:44806004-150037797(probes 495522:551597)    	chr5:94980800-94997033(probes 520377:520383)        	chr5:94968193-94997473(probes 520369:520384)        	0.052907	     0.1612		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	1	
Deletion Peak  6	6p25.2  	chr6:1-13288668(probes 570334:579180)              	chr6:3151318-3232771(probes 571967:572002)            	chr6:3151332-3174946(probes 571968:571969)            	0.048136	   0.048136		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	1	1	1	1	0	0	1	0	1	0	1	0	0	1	1	1	1	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	0	1	1	0	1	1	0	1	0	0	1	0	
Deletion Peak  7	6p22.3  	chr6:1-32912587(probes 570334:589580)              	chr6:22568822-22572797(probes 585538:585539)        	chr6:22506018-22593985(probes 585473:585557)        	0.055123	    0.18337		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	1	1	1	1	0	0	1	0	1	0	1	0	0	1	1	1	1	0	1	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	0	1	0	0	1	1	0	1	0	0	1	0	
Deletion Peak  8	6q22.33 	chr6:1-171115067(probes 570334:666872)            	chr6:127437577-127523287(probes 640554:640601)    	chr6:127482208-127486616(probes 640578:640579)    	0.26862	    0.23657		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	1	1	1	1	1	0	1	0	1	1	1	0	0	0	1	1	1	0	1	0	0	1	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	1	1	1	0	1	1	0	1	0	0	1	1	
Deletion Peak  9	7q36.1  	chr7:120987351-159138663(probes 728346:748235)  	chr7:151566444-151578991(probes 744781:744782)    	chr7:151352086-151981957(probes 744663:744971)    	0.048136	   0.048136		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	
Deletion Peak 10	8p21.3  	chr8:1-28204263(probes 748236:764687)               	chr8:22203435-22978810(probes 760607:760963)        	chr8:5247523-26980586(probes 750787:763753)          	0.048136	   0.048136		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	1	1	0	1	0	1	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	1	1	0	0	1	0	0	0	0	1	0	
Deletion Peak 11	8q12.1  	chr8:48647103-69264813(probes 773445:785302)      	chr8:58114932-58200501(probes 778745:778788)        	chr8:58109221-58208537(probes 778741:778790)        	0.091306	   0.090283		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 12	9p21.3  	chr9:21865498-21996995(probes 843258:843321)      	chr9:21959052-21977193(probes 843309:843310)        	chr9:19386566-28416171(probes 841453:847294)        	2.9278e-23	 2.9278e-23		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	1	0	1	1	1	1	1	1	1	1	1	0	1	1	0	1	1	1	1	0	1	0	0	1	0	0	0	0	1	1	0	0	1	1	0	1	0	1	1	1	1	0	1	1	1	0	1	1	1	1	1	0	0	1	0	1	0	0	1	1	
Deletion Peak 13	10q23.2 	chr10:86084854-89735596(probes 948012:950268)    	chr10:88018950-88030549(probes 949401:949402)      	chr10:87542271-88109286(probes 949038:949457)      	0.057755	   0.057755		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	1	0	0	1	0	1	0	0	0	0	
Deletion Peak 14	11p15.4 	chr11:1-8622541(probes 978779:983111)               	chr11:4563048-4907215(probes 980385:980640)          	chr11:1-10077602(probes 978779:983931)               	0.013803	   0.014863		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	1	0	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	1	1	1	0	0	0	0	0	0	0	1	0	
Deletion Peak 15	12p12.3 	chr12:4374374-22798169(probes 1057892:1068692)    	chr12:15474824-15811655(probes 1064298:1064453)    	chr12:7853480-22548548(probes 1060186:1068580)      	0.048136	   0.048136		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	
Deletion Peak 16	12q12   	chr12:31809739-53193414(probes 1074574:1083239)  	chr12:40148348-40501364(probes 1076069:1076331)    	chr12:40323642-40324141(probes 1076201:1076202)    	0.051807	   0.075974		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	1	0	1	0	0	0	0	
Deletion Peak 17	12q24.31	chr12:71510065-133851895(probes 1094258:1130044)	chr12:121437721-121456000(probes 1124696:1124711)	chr12:121446747-121449755(probes 1124704:1124705)	0.055768	    0.06764		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	1	1	0	0	1	0	1	0	0	1	1	
Deletion Peak 18	15q15.1 	chr15:1-56540308(probes 1236192:1253744)         	chr15:40328974-41586765(probes 1244511:1245085)    	chr15:40350132-40351716(probes 1244520:1244521)    	0.17844	    0.18337		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	1	1	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	1	1	
Deletion Peak 19	17p11.2 	chr17:1-81195210(probes 1321557:1358559)           	chr17:17322053-17328279(probes 1329760:1329766)    	chr17:17325326-17328110(probes 1329764:1329765)    	0.24007	    0.23657		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	0	0	1	1	1	0	0	0	1	0	0	0	1	0	0	1	1	0	1	0	1	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	1	1	1	0	1	0	0	0	1	1	0	1	0	0	1	0	0	1	0	0	1	1	
Deletion Peak 20	17q22   	chr17:48940134-81195210(probes 1341511:1358559)  	chr17:56426873-56498380(probes 1346271:1346306)    	chr17:51946191-59971369(probes 1343096:1347908)    	0.051807	   0.051807		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	0	0	1	0	0	1	1	1	0	0	0	0	0	0	1	0	
Deletion Peak 21	18p11.32	chr18:1-5797711(probes 1358560:1361451)             	chr18:1-894241(probes 1358560:1358603)                 	chr18:1-340962(probes 1358560:1358567)                 	0.20802	    0.21147		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	1	0	0	1	1	0	1	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	1	0	1	0	0	1	1	0	0	0	0	1	0	0	0	1	1	0	0	1	1	0	0	0	0	0	1	
Deletion Peak 22	18q12.1 	chr18:22038543-59223753(probes 1368576:1392015)  	chr18:25529088-25766994(probes 1370937:1371080)    	chr18:22792867-29734592(probes 1369156:1373399)    	0.044425	   0.057755		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	1	0	1	1	0	1	1	1	1	1	1	1	1	1	1	0	1	0	0	0	0	1	1	1	0	0	0	1	0	0	1	1	0	1	0	1	1	1	0	0	0	1	1	0	1	0	1	0	0	0	1	1	1	1	0	1	1	1	
Deletion Peak 23	18q21.2 	chr18:48514396-48920689(probes 1385162:1385489)  	chr18:48552482-48616860(probes 1385184:1385309)    	chr18:36133799-67408207(probes 1377447:1396628)    	1.5584e-06	 2.0298e-05		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	1	1	0	1	1	1	1	0	1	1	1	1	1	1	1	1	1	1	1	1	0	0	0	0	1	1	1	0	0	1	1	0	0	1	1	0	1	0	1	1	1	1	0	0	1	1	0	1	1	1	1	1	0	1	1	1	1	0	1	1	1	
Deletion Peak 24	19q13.33	chr19:41333271-59128983(probes 1418106:1425203)  	chr19:48312828-48468788(probes 1420906:1420933)    	chr19:48334899-48338546(probes 1420911:1420912)    	0.21208	    0.21147		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	
Deletion Peak 25	21q22.11	chr21:1-48129895(probes 1462505:1483095)         	chr21:32487918-32935111(probes 1473378:1473702)    	chr21:32716703-32720448(probes 1473541:1473542)    	0.18958	          1		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	1	1	1	0	0	1	1	1	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	1	0	1	0	1	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	
Deletion Peak 26	21q22.11	chr21:1-48129895(probes 1462505:1483095)         	chr21:32487918-32935111(probes 1473378:1473702)    	chr21:32716703-32720448(probes 1473541:1473542)    	0.18958	    0.18337		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	0	0	0	0	0	0	0	1	1	1	1	0	0	1	1	1	0	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	0	1	1	0	0	0	0	1	0	1	0	1	0	1	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	
Deletion Peak 27	22q13.31	chr22:42660882-51304566(probes 1495416:1500032)  	chr22:46300770-46512954(probes 1497823:1497878)    	chr22:44789060-47196302(probes 1496777:1498296)    	0.048136	   0.048136		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	1	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	1	0	0	1	0	1	0	0	0	0	1	0	0	0	1	0	
Deletion Peak 28	Xq21.1  	chrX:1-149685409(probes 1500033:1562245)          	chrX:9426965-149685409(probes 1501396:1562245)      	chrX:9480454-9594545(probes 1501445:1501535)          	0.18958	    0.20725		0: t>-0.1; 1: -0.1>t> -1.3; 2: t< -1.3	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	
Amplification Peak  1 - CN values	1p34.2  	chr1:37413199-44557362(probes 17955:21959)        	chr1:41107240-42223908(probes 19871:20531)        	chr1:41107240-42227600(probes 19871:20534)        	0.19492	    0.19492		Actual Copy Change Given	0.0062481	-0.00097017	0.023286	0.0048579	0.0016085	-0.08951	0.0031976	-0.031575	-0.052288	-0.21082	0.067375	0.0014749	0.14021	-0.46014	0.0058309	-0.0051227	0.05466	-0.0025749	0.010842	-0.098746	0.0077783	3.0905	0.022319	-0.86145	0	-0.016567	0.0076392	0	0.11091	-0.044822	-0.030799	-0.0073339	0.0034687	-0.17958	0.0029133	-0.015054	0.029184	-0.046177	0.10462	0	0.024082	0.0072806	-0.0073898	-0.057979	0.056896	0.0068044	0.026462	-0.19987	-0.012713	-0.070135	-0.17056	-0.010094	1.387	0.011533	-0.37306	-0.0032543	-0.00062208	-0.11665	-0.10434	-0.028901	-0.0084169	0.0026357	-0.03395	-0.23667	-0.025893	
Amplification Peak  2 - CN values	1p12    	chr1:120033150-120523901(probes 67544:67828)    	chr1:120033850-120522600(probes 67545:67827)    	chr1:120033850-120527360(probes 67545:67830)    	0.058099	   0.058099		Actual Copy Change Given	0.024829	-0.00097017	0.023286	0.0015906	0.0016085	-0.08951	0.0031976	-0.031575	-0.052288	2.6219	0.067375	0.0014749	0.14021	0.44308	0.0058309	0.021043	0.05466	0.0064447	-0.005034	1.3395	0.0077783	0.012376	0.02274	0.018943	0	-0.0005877	0.0076392	0	0.11091	-0.044822	-0.030799	-0.0073339	0.0034687	-0.17958	0.0029133	-0.015054	0.029184	0.33254	0.10462	0	0.024082	0.0072806	0.0013868	-0.057979	0.056896	0.0068044	0.12402	-0.19987	-0.012713	-0.070135	-0.17056	0.0052455	-0.0019399	0.011533	-0.36488	-0.0032543	0.088576	0.11418	-0.10434	-0.028901	2.096	0.0026357	-0.03395	-0.23667	0.11902	
Amplification Peak  3 - CN values	7q22.1  	chr7:97888086-100214486(probes 716809:717691)    	chr7:99137189-99176019(probes 717308:717318)      	chr7:97524031-100224010(probes 716668:717693)    	0.034237	   0.034237		Actual Copy Change Given	-0.06585	0.0033299	0.021603	0.0024969	0.022585	0.0091705	-0.0017948	0.41444	0.30298	0.013516	0.26718	0.0027745	0.15459	0.013213	0.0074266	3.6569	0.041458	-0.0024364	0.00013863	0.080386	1.0103	0.62333	0.010021	0.0068677	-0.0015243	-0.28025	0.0066653	0.018243	0.012546	0.11038	0.017326	0.025531	0.00097064	0.24949	-0.0027707	-0.0020784	-0.014342	0.11701	0.062223	0.010285	0.035196	0.0011374	0.0056919	1.2342	-0.039072	0.00041593	0.20595	-0.2097	0.0083351	0.0071332	-0.03771	0.21776	0.00936	0.018936	0.038347	-0.0010386	0.001414	0.12351	0.39496	0.03369	0.15487	-0.0024329	0.0016642	0.17309	0.10424	
Amplification Peak  4 - CN values	8q24.21 	chr8:127864635-128801947(probes 819175:819891)  	chr8:128107201-128800300(probes 819382:819890)  	chr8:127865120-128809606(probes 819176:819893)  	0.034237	   0.034237		Actual Copy Change Given	0.60268	-0.00013862	0.0095883	0.012795	0.020623	0.0080567	-0.01312	0.40084	0.006499	0.016146	0.15547	0.028763	0.045566	0.011679	0.18056	0.020483	0.077718	1.1587	0.0023581	0.049897	1.0266	0.60937	0.19529	0.003069	0.0020805	0.82112	-0.0072424	0.0013868	0.22453	-0.063032	0.021946	0.037076	0.0013388	3.6569	0.10716	0.036088	0.067232	0.3887	0.20289	-0.0016629	0	-0.0046493	-0.041295	0.07815	-0.033677	-0.0020784	0.050108	0.18283	0.36104	0.12623	-0.024251	0.30591	0.39048	-0.00056095	0.39496	0.0025671	0.00016585	0.23426	0.61952	0.09638	0.33021	-0.00013862	0.0055484	0.42206	0.11477	
Amplification Peak  5 - CN values	9p13.3  	chr9:34541740-36088376(probes 850574:851368)      	chr9:35245314-35291844(probes 850952:850969)      	chr9:35245314-35297424(probes 850952:850972)      	0.24712	    0.24712		Actual Copy Change Given	-0.6465	0.00041593	-0.0079581	-0.0024938	-0.34125	-0.27703	-0.021035	-0.50873	-0.22996	0.5029	-0.15067	-0.37324	-0.032996	-0.47554	-0.14901	-0.69351	-0.038034	-0.61841	0.0034687	0.066445	0.05694	0.04741	-0.11755	-0.013264	-0.0008316	-0.28382	-0.0081624	-0.0016629	0.5926	0.0015255	-0.070343	-0.03553	-0.040825	-0.15873	-0.0023553	-0.053341	-0.01037	1.4697	-0.13199	-0.00069303	-0.14648	-0.0060409	-0.085722	-0.16357	-0.10039	-0.00013862	-0.098238	0.30921	-0.16914	-0.1092	-0.060076	-0.33606	-0.0047079	-0.13114	-0.45982	-0.30434	-0.0031588	-0.022469	0.029888	0.013772	0.16805	-0.043873	1.6566	-0.36181	0.12093	
Amplification Peak  6 - CN values	11p11.2 	chr11:46068136-46086726(probes 1007868:1007876)  	chr11:46069665-46082094(probes 1007869:1007875)  	chr11:46069665-46087487(probes 1007869:1007878)  	0.18317	    0.18317		Actual Copy Change Given	0.0098669	0	0.0012481	-0.0008316	-0.0042469	-0.25805	0.0016708	1.23	0.011233	3.6569	-0.056173	-0.0029091	-0.079609	-0.1876	0.0087528	0.015587	-0.0036011	-0.00049703	0.0047629	-0.0091959	0	0.015587	-0.13483	0.0098669	0.0015255	0	0	-0.0008316	0	-0.043059	0.01174	0.018943	0.00083195	0.060365	-0.0022168	0.0024969	-0.015741	0	-0.099341	0.001803	0.029842	0.001348	0	0.066945	0	0.0026357	-0.033541	0.060936	0.23985	0.09188	-0.0041546	-0.13471	-0.0027707	0.01558	0.014051	0.0011795	0.003496	-0.097079	0.034536	-0.040209	0.15562	-0.013677	-0.019726	0.1971	0.10351	
Amplification Peak  7 - CN values	12p13.33	chr12:1-5520802(probes 1056069:1058898)             	chr12:1-2272875(probes 1056069:1056491)             	chr12:1-2276946(probes 1056069:1056494)             	0.19062	    0.19062		Actual Copy Change Given	0.66715	-0.0018014	0.0030522	-0.0075624	0.012655	0.003191	0.0056985	0.0086715	-0.2356	-0.18433	-0.045672	-0.0027707	0.0016642	0.48975	-0.046854	-0.021784	-0.0080244	0.47502	-0.58559	0.076479	-0.029584	3.6569	0.038928	-0.36029	0.0020805	0.18253	-0.0011087	-0.00027724	0.0040243	-0.010232	-0.033208	0.041175	0.034113	0.23442	-0.0019399	0.001803	-0.0092666	-0.10026	0.087245	-0.0010127	0.029561	0.019282	-0.41614	0.094927	-0.051451	0.0087528	-0.022881	0.27947	0.036794	0.0090312	0.0091705	0.010044	3.6569	-0.069874	-0.3685	0.0047893	-0.003574	0.051672	0.11038	-0.022195	-0.19875	-0.015466	0.00083195	0.12491	-0.084793	
Amplification Peak  8 - CN values	12p11.21	chr12:31414318-31442221(probes 1074372:1074383)  	chr12:31414474-31440450(probes 1074373:1074382)  	chr12:30846561-32183698(probes 1074061:1074757)  	0.0086376	  0.0086376		Actual Copy Change Given	0.0097276	-0.0018014	0.0030522	-0.0019399	0.012655	0.003191	0.0056985	0.0086715	-0.11132	0.42032	-0.056442	-0.0027707	0.0016642	0.48975	-0.046854	-0.021784	0.011958	0.44484	0.57505	0.077792	-0.029584	1.2031	0.038928	0.020343	-0.00069551	0.19542	-0.0011087	-0.00027724	0.0040243	-0.010232	-0.033208	0.041175	-0.010094	0.23442	-0.0019399	0.001803	-0.0092666	0.38998	-0.0073912	-0.0010127	0.029561	0.019282	-0.36544	3.3662	1.3047	-0.0022168	-0.022881	0.28295	0.036794	0.0090312	0.0091705	0.010044	0.0070826	-0.069874	1.2056	0.0047893	-0.003574	-0.043737	0.11038	-0.022195	-0.19875	-0.015466	0.00083195	0.41228	-0.084793	
Amplification Peak  9 - CN values	12q15   	chr12:68307608-70989876(probes 1092009:1093890)  	chr12:68393163-68418829(probes 1092082:1092104)  	chr12:68310485-70992716(probes 1092010:1093892)  	0.014023	   0.014023		Actual Copy Change Given	0.015308	-0.0018014	-0.0017159	-0.0019399	0.0037684	0.003191	0.0056985	-0.014308	-0.11132	1.5833	-0.056442	-0.0027707	0.0016642	-0.46897	-0.046854	2.4407	0.011958	3.6569	-0.0045695	0.077792	-0.029584	1.8082	0.038928	0.020343	-0.00069551	-0.28952	-0.0011087	-0.00027724	0.0040243	-0.010232	-0.033208	-0.0071958	-0.010094	0.23442	-0.0019399	0.001803	-0.0092666	-0.30814	-0.0073912	-0.00055444	0.029561	0.019282	0.10585	0	0.19299	-0.0022168	-0.024251	0.26781	0.036794	0.0027745	0.0091705	-0.32254	0.0024969	-0.069874	-0.35613	-0.3095	-0.00094309	-0.043737	-0.21973	-0.022195	-0.19875	-0.015466	0.00083195	-0.14271	-0.084793	
Amplification Peak 10 - CN values	17p11.2 	chr17:18097231-18598782(probes 1330180:1330296)  	chr17:18098196-18289032(probes 1330181:1330278)  	chr17:18098196-18602475(probes 1330181:1330298)  	0.14465	    0.14465		Actual Copy Change Given	-0.60729	0.00055459	0.0023581	0.00083195	0.021744	-0.011611	-0.029714	3.6569	-0.15569	-0.18647	-0.038986	-0.0012473	0.013772	-0.47757	-0.082402	-0.0087146	-0.027945	-0.54467	0.0076392	-0.036468	-0.63547	-0.32588	0.0083502	-0.4108	-0.0024938	-0.29378	-0.0016629	-0.0038779	-0.077345	-0.011473	-0.071146	-0.020824	-0.019314	-0.39297	-0.24849	-0.0044312	-0.021784	-0.16103	-0.073209	-0.00055444	-0.036718	0.0020005	0.54965	-0.20477	-0.15003	-0.55877	0.019643	-0.19962	-0.046989	0.0043021	0.0086135	-0.31541	-0.37144	-0.039808	-0.38022	-0.023359	-0.041404	0.75757	-0.035721	0.019923	-0.23187	-0.027343	-0.038578	-0.3685	-0.29579	
Amplification Peak 11 - CN values	17q21.33	chr17:50046018-50067847(probes 1342075:1342086)  	chr17:50048924-50067238(probes 1342076:1342085)  	chr17:50048924-50071512(probes 1342076:1342088)  	0.19062	    0.19062		Actual Copy Change Given	-0.60729	0.00055459	0.0023581	0.00083195	0.021744	-0.011611	-0.029714	-0.52936	-0.15569	-0.18647	-0.038986	-0.0012473	0.013772	0.018613	-0.082402	-0.0087146	-0.027945	0.002832	0.0076392	-0.036468	0.047126	-0.32461	-0.28298	-0.0080244	-0.0024938	0.22823	-0.0016629	-0.0038779	-0.077345	-0.011473	0.0095106	-0.020824	-0.019314	-0.40084	0	-0.0044312	0.0056919	-0.16103	-0.073209	-0.00055444	-0.036718	0.0020005	-0.019803	1.8339	-0.15003	0.0062481	0.019643	0.27285	-0.046989	0.0043021	0.0086135	-0.31541	-0.011198	-0.039808	-0.38022	0.55399	1.3845	0.031155	-0.035721	0.44765	0.16445	-0.0029091	-0.038578	-0.36759	0.082621	
Amplification Peak 12 - CN values	18q11.2 	chr18:19826724-19972386(probes 1367274:1367363)  	chr18:19826743-19876380(probes 1367275:1367305)  	chr18:18694023-22471383(probes 1366780:1368953)  	1.4569e-06	 1.4569e-06		Actual Copy Change Given	1.9463	-0.096968	-0.03504	-0.017116	0.22746	-0.19962	-0.0087081	0.73709	-0.088665	-0.096968	0.43716	-0.013206	1.7945	-0.46664	-0.018628	1.415	-0.16701	0.022222	0.5003	-0.11711	2.9792	-0.31307	0.011973	0.33577	0.00069327	-0.0091286	-0.015466	-0.0030475	0.19269	-0.10644	-0.12999	-0.024524	-0.029857	-0.04048	-0.15643	-0.017391	-0.056712	0.24684	-0.12421	0.0063871	-0.17276	-0.0064465	0.017963	-0.19487	0.69821	1.2034	0	-0.067458	-0.16536	0.319	-0.019863	0.0013868	0.34356	-0.14362	0.9514	0.046772	-0.05857	-0.18697	-0.21614	-0.11024	0.48475	-0.0077482	1.2221	0.50255	-0.27822	
Amplification Peak 13 - CN values	19q13.13	chr19:38216998-40880126(probes 1416624:1417941)  	chr19:38514319-38644644(probes 1416784:1416868)  	chr19:38514319-39186949(probes 1416784:1417120)  	0.086108	   0.086108		Actual Copy Change Given	0.053094	0.0019418	0.016006	-0.0084237	0.012516	-0.014641	-0.0017243	0.27812	0.022838	0.64231	0.080168	-0.00097017	0.0072217	0.026654	-0.043466	0.58935	0.048688	0.53861	0.00597	0.1087	0.34518	-0.036401	-0.052382	-0.00055444	-0.00013862	0.22237	0.012237	0.0065262	-0.012438	0.0077783	0.13176	-0.0030475	0.01419	-0.091155	-0.047666	-0.020678	0.01433	0.097833	0.037641	-0.0048461	0.021838	-0.0011886	1.2414	1.2705	0.09667	0.019363	0.058081	-0.18055	0.039902	0.021323	0.01433	0.032986	-0.029175	-0.12642	0.33122	-0.010438	-0.0034356	0.004719	0.034677	0.22746	1.9649	0.0083351	-0.007472	0.10031	-0.053796	
Amplification Peak 14 - CN values	20q13.2 	chr20:51093677-52298532(probes 1454899:1455693)  	chr20:51395648-51437828(probes 1455129:1455154)  	chr20:51093874-51645373(probes 1454900:1455266)  	0.10406	    0.10406		Actual Copy Change Given	0.70513	0.0012481	0.010285	0.0084743	0.0048579	0	0.0077502	0.365	0.058481	0.012655	0.15679	-0.0053992	0.013632	0.023145	0.10672	0.013353	0.053237	0.55251	0.013492	0.0082673	0.047196	0.32705	0.52785	0.0052749	-0.010094	0.22437	0.0066653	0.0015255	-0.0096806	0.030169	0.01523	0.0070826	-0.0022168	0.39164	-0.0072993	0.068522	0.0080567	0.0023581	0.1041	0.0086135	0.028998	-0.0025736	-0.15554	0.064225	0.35104	0.0097276	0.04344	0.31161	3.6569	-0.075745	0.006109	0.010982	0.38502	-0.084667	0.34616	0.0052062	0.0061363	-0.0060904	0.28184	0.050108	-0.020824	-0.002398	-0.01849	0.19102	0.078006	
Amplification Peak 15 - CN values	Xp22.11 	chrX:23975644-23983593(probes 1508820:1508827)    	chrX:23976894-23983115(probes 1508821:1508826)    	chrX:23976894-23993915(probes 1508821:1508829)    	0.012188	   0.012188		Actual Copy Change Given	-0.10635	3.6569	-0.036265	3.6569	-0.017803	-0.038034	0.011407	-0.038793	-0.038197	-0.059	0.014051	-0.033977	-0.0091286	-0.14232	-0.088507	-0.1968	0.01447	-0.023783	-0.0080244	0.027288	-0.078411	-0.10906	-0.17574	-0.062764	0.012097	-0.0123	0.0058455	0.0033299	0.10848	-0.0019399	-0.24783	0.0086135	-0.015466	0.05153	-0.014778	0.0015255	0.0020357	-0.021784	-0.27703	0.0041632	-0.012345	0.00044491	-0.050235	-0.0015243	0.1424	-0.060345	0.015587	0.048546	-0.0088526	-0.029038	0.00069327	-0.10026	0.048688	-0.038992	-0.1508	-0.075811	-0.0068924	0.010982	-0.024112	0.014749	0.038711	-0.0049844	-0.0096806	-0.047801	0.003191	
Amplification Peak 16 - CN values	Xq27.1  	chrX:138564705-138580557(probes 1556908:1556914)	chrX:138564964-138580376(probes 1556909:1556913)	chrX:138564964-138580758(probes 1556909:1556916)	0.0092628	  0.0092628		Actual Copy Change Given	3.6569	-0.0084385	0.015028	-0.0037679	-0.023429	-0.061056	-0.021539	-0.038793	-0.038197	-0.046041	0.014051	-0.033977	-0.0091286	-0.19829	-0.010508	-0.1968	0.01447	-0.023783	-0.0080244	0.026715	-0.094688	3.6569	0.12095	-0.062764	-0.00047385	-0.015741	0.0079175	-0.00038911	-0.097477	-0.0019399	0.12154	0.0094491	0.01419	0.05153	-0.014778	0.0015255	-0.0021732	0.058081	0.22715	0.0041632	-0.012345	0.0044999	-0.050235	-0.011198	0.013492	-0.060345	0.015587	0.015168	-0.017559	-0.029038	0.00069327	0.19193	0.054233	-0.023709	-0.1508	-0.079557	-0.0068924	0.0070826	-0.017599	0.014749	0.041458	-0.0049844	-0.0096806	-0.047801	-0.040345	
Deletion Peak  1 - CN values	1p36.22 	chr1:1-36027453(probes 1:17233)                    	chr1:10263148-10447791(probes 3991:4095)            	chr1:10352962-10357405(probes 4044:4045)            	0.055123	    0.10428		Actual Copy Change Given	0.060365	-0.00097017	0.0019418	0.0048579	0.030169	-0.08951	0.0031976	-0.0905	-0.052288	-0.21082	0.067375	-0.37943	-0.27021	-0.43594	0.0058309	-0.0051227	-0.010235	0.57405	0.017544	-0.098746	0.0077783	-0.33802	-0.2922	0.0022193	0	-0.039182	0.0076392	0	0.19132	-0.044822	-0.030799	-0.011473	0.0034687	-0.15656	0.0029133	-0.043751	-0.061017	-0.046177	0.10462	0	0.024082	0.0072806	-0.0073898	-0.057979	0.056896	0.5463	0.026462	-0.19987	-0.014663	-0.070135	-0.17056	0.33302	-0.025209	0.011533	-0.37306	-0.0032543	-0.00062208	-0.11665	-0.10434	-0.028901	-0.016567	0.0026357	-0.03395	-0.23667	-0.16088	
Deletion Peak  2 - CN values	1p36.11 	chr1:1-38233398(probes 1:18402)                    	chr1:27101202-27341204(probes 12761:12835)          	chr1:20791181-30837979(probes 9686:14472)           	0.048136	    0.18337		Actual Copy Change Given	0.060365	-0.00097017	0.023286	0.0048579	0.0016085	-0.08951	0.0031976	-0.031575	-0.052288	-0.21082	0.067375	-0.37943	-0.27021	-0.46014	0.0058309	-0.0051227	-0.010235	-0.0025749	-0.57989	-0.098746	0.0077783	-0.33802	-0.2922	0.0022193	0	-0.039182	0.0076392	0	-0.26155	-0.044822	-0.030799	-0.0073339	0.0034687	-0.15656	0.0029133	-0.015054	0.029184	-0.046177	0.10462	0	0.024082	0.0072806	-0.0073898	-0.057979	0.056896	0.0068044	0.026462	-0.19987	-0.012713	-0.070135	-0.17056	-0.31447	-0.37865	0.011533	-0.37306	-0.0032543	-0.00062208	-0.11665	-0.10434	-0.028901	-0.42309	0.0026357	-0.03395	-0.23667	-0.036031	
Deletion Peak  3 - CN values	1p21.2  	chr1:97542480-101370921(probes 54420:56717)      	chr1:100101193-100161103(probes 55948:55986)      	chr1:100143393-100146430(probes 55968:55969)      	0.05486	    0.14154		Actual Copy Change Given	0.024829	-0.00097017	0.023286	-0.0027629	0.0016085	-0.08951	0.0031976	-0.031575	-0.052288	-0.21082	0.067375	0.0014749	0.14021	-0.46838	0.0058309	0.021043	0.05466	0.0064447	-0.005034	-0.098746	0.0077783	-0.31061	-0.27031	0.018943	0	0.0054139	0.0076392	0	0.11091	-0.044822	-0.030799	-0.0073339	0.0034687	-0.17958	0.0029133	-0.015054	0.029184	-0.046177	0.10462	0	0.024082	0.0072806	0.0013868	-0.057979	0.056896	0.0068044	0.12402	-0.19987	-0.012713	-0.070135	-0.17056	-0.33329	0.024689	0.011533	-0.37306	-0.0032543	0.088576	0.11418	-0.10434	-0.028901	-0.0084169	0.0026357	-0.03395	-0.23667	0.11902	
Deletion Peak  4 - CN values	5q14.2  	chr5:72858984-110850818(probes 508198:528140)    	chr5:82345108-82375782(probes 513937:513957)        	chr5:82246120-82446119(probes 513872:514007)        	0.048136	    0.10428		Actual Copy Change Given	-0.00013862	-0.0012473	0.010564	-0.00027724	-0.0057568	0.0084743	0.0037892	-0.45657	0	0.014052	-0.0018014	0.0019418	0.0019418	0.011978	-0.13419	0.035524	0.015447	0.0035263	-0.0011087	0.072542	-0.6274	-0.32263	-0.26539	-0.053476	0.00069327	-0.9113	0.00597	0.0016642	0.012376	0	0.022366	0	-0.062764	-0.10517	0.0073609	0.0011093	0.0054139	-0.022606	-0.21542	-0.00013862	0.02703	0.0032498	0.0038854	-0.0036011	0.095217	-0.0008316	0.019923	-0.031496	-0.018902	0.0049969	0.0034687	-0.34271	0.01419	0.011254	0.030591	0.0054842	0.0029406	0.013353	-0.083598	0.060651	-0.30396	-0.0017087	0.0049969	-0.35624	-0.30369	
Deletion Peak  5 - CN values	5q15    	chr5:44806004-150037797(probes 495522:551597)    	chr5:94980800-94997033(probes 520377:520383)        	chr5:94968193-94997473(probes 520369:520384)        	0.052907	     0.1612		Actual Copy Change Given	-0.00013862	-0.0012473	0.010564	-0.00027724	-0.0057568	0.0084743	0.0037892	-0.45657	0.0016371	0.015308	-0.0018014	0.0019418	0.0019418	-0.47236	-0.13419	0.035524	0.015447	0.0035263	-0.0011087	0.072542	-0.6274	-0.32263	-0.26539	-0.053476	0.00069327	-0.26742	0.00597	0.0016642	0.012376	0	0.022366	0	-0.062764	-0.10517	0.0073609	0.0011093	0.0054139	-0.022606	-0.21542	-0.00013862	0.02703	0.0032498	-1.0768	-0.0036011	0.095217	-0.0008316	0.019923	-0.031496	-0.018902	0.0049969	0.0034687	-0.34271	0.01419	0.011254	0.030591	0.0054842	0.0029406	0.013353	-0.083598	0.060651	-0.30396	-0.0017087	0.0049969	-0.35624	-0.30369	
Deletion Peak  6 - CN values	6p25.2  	chr6:1-13288668(probes 570334:579180)              	chr6:3151318-3232771(probes 571967:572002)            	chr6:3151332-3174946(probes 571968:571969)            	0.048136	   0.048136		Actual Copy Change Given	-0.65407	0	-0.0069195	-0.0034627	-0.0069195	-0.16039	-0.048065	-0.53455	-0.16818	-0.22022	-0.15477	-0.00027724	-0.062361	-0.23459	0.013772	-0.6296	0.09188	-0.61293	-0.0078863	-0.012859	-0.28928	-0.32623	-0.24483	-0.37132	-0.00069303	-0.17163	-0.00041585	0.0056919	0.0036076	-0.083333	-0.15356	-0.023155	-0.073496	0.41381	-0.23123	-0.029857	0.00097064	-0.076278	0	0.010564	-0.033313	-0.0038193	-0.087314	0.079735	-0.25055	0.0070826	-0.061234	-0.20162	-0.10762	0.00083195	-0.016567	0.0029133	-0.37482	0.0012415	-0.35731	-0.31161	0.014218	-0.11822	-0.2446	0.017124	-0.19625	-0.010319	0.0049969	-1.2929	-0.078272	
Deletion Peak  7 - CN values	6p22.3  	chr6:1-32912587(probes 570334:589580)              	chr6:22568822-22572797(probes 585538:585539)        	chr6:22506018-22593985(probes 585473:585557)        	0.055123	    0.18337		Actual Copy Change Given	-1.2929	0	-0.0069195	-0.0034627	-0.0069195	-0.16039	-0.048065	-0.53193	-0.16818	-0.22022	-0.15477	-0.000726	-0.062361	-0.22576	-0.071528	-0.6168	0.09188	-0.61293	-0.0078863	-0.012859	-0.28928	-0.32623	-0.24483	-0.37132	-0.00069303	-0.17163	-0.00041585	0.00013863	-0.18803	-0.083333	-0.15356	-0.023155	-0.025117	0.40295	-0.23123	-0.029857	0.00097064	-0.076278	0	0.010564	-0.033313	-0.0038193	-0.087314	-0.031025	-0.25055	0.0070826	-0.061234	-0.20112	-0.15031	0.00083195	-0.016567	0.0029133	0.0033299	0.0012415	-0.35731	0.010634	-0.0021839	-0.11822	-0.25781	0.017124	-0.19625	-0.00063209	0.0049969	-0.28382	-0.078272	
Deletion Peak  8 - CN values	6q22.33 	chr6:1-171115067(probes 570334:666872)            	chr6:127437577-127523287(probes 640554:640601)    	chr6:127482208-127486616(probes 640578:640579)    	0.26862	    0.23657		Actual Copy Change Given	-0.65566	0	-0.0069195	-0.0034627	-0.0069195	-0.16039	-0.048065	-0.50676	-0.16818	-0.22022	-0.15477	-0.37516	-0.062361	-0.48344	-0.071528	-0.62421	-0.10184	-0.62146	-0.0078863	-0.012859	-0.051046	-0.24679	-0.25765	-0.41286	-0.00069303	-0.9329	-0.0018977	0.00013863	-0.18803	-0.083333	-0.15356	-0.023155	-0.025117	-0.19875	-0.23123	-0.029857	0.00097064	-0.19475	0	0.010564	-0.033313	-0.0038193	-0.087314	-0.031025	0.1486	-0.5853	-0.097879	-0.20622	-0.19237	-0.0074187	-0.024382	0.0029133	0.0090312	-0.12843	-0.34767	-0.3144	0	-0.11822	-0.25781	0.017124	-0.19625	0.0084743	0.0049969	-0.28382	-0.29319	
Deletion Peak  9 - CN values	7q36.1  	chr7:120987351-159138663(probes 728346:748235)  	chr7:151566444-151578991(probes 744781:744782)    	chr7:151352086-151981957(probes 744663:744971)    	0.048136	   0.048136		Actual Copy Change Given	-0.090096	0.0033299	0.021603	0.0024969	-0.015442	0.0091705	-0.0017948	0.36714	-0.17843	0	0.26718	0.0027745	0.020763	0.00083195	0.0074266	-0.71239	0.041458	-0.0024364	0.00013863	0.080386	-0.62751	0.62333	0.010021	0.0091705	0.0033299	-0.28025	0.0066653	0.018243	0.012546	0.11038	-0.027364	0.025531	0.00097064	0.24214	-0.0027707	-0.0020784	-0.014342	0.11701	0.062223	0.010285	0.03576	-0.012793	0.0056919	-0.10276	-0.039072	0.00041593	0.12405	-0.79528	0.0083351	0.0071332	-0.03771	0.42133	0.0040243	0.018936	0.038347	-0.0010386	0.001414	0.12351	-0.25866	0.03369	0.15487	-0.0013858	0	0.17309	0.093911	
Deletion Peak 10 - CN values	8p21.3  	chr8:1-28204263(probes 748236:764687)               	chr8:22203435-22978810(probes 760607:760963)        	chr8:5247523-26980586(probes 750787:763753)          	0.048136	   0.048136		Actual Copy Change Given	-0.65174	-0.00013862	0.0095883	0.012795	0.0040243	0.0080567	-0.050014	0.40084	0.006499	0.016146	-0.16675	0.001803	0.045566	0.0094491	-0.15745	0.020483	-0.0031866	-0.60212	0.0023581	-0.089366	-0.63519	-0.68852	-0.086031	-0.3711	0.0020805	-0.29201	-0.0072424	0.0013868	-0.15682	-0.063032	0.021946	0.037076	0.0013388	-0.42898	0.10716	-7.8835e-05	0.015786	-0.16001	0.11155	-0.0016629	0	-0.0046493	-0.041295	0.07815	-0.11542	-0.0020784	0.011332	-0.47765	-0.19112	0.014459	-0.024251	-0.33987	0	-0.00056095	-0.79394	-0.31383	0.012543	0.037858	-0.2339	0.050305	0.22422	-0.00013862	-0.063972	-0.62988	0.10891	
Deletion Peak 11 - CN values	8q12.1  	chr8:48647103-69264813(probes 773445:785302)      	chr8:58114932-58200501(probes 778745:778788)        	chr8:58109221-58208537(probes 778741:778790)        	0.091306	   0.090283		Actual Copy Change Given	0.60268	-0.00013862	0.0095883	0.012795	0.0040243	0.0080567	-0.01312	0.40084	0.006499	0.016146	0.15547	0.017544	0.045566	0.0094491	0.18056	0.020483	0.077718	-0.6248	0.0023581	-0.089366	1.0266	0.60937	-0.086031	0.003191	0.0020805	0.29692	-0.0072424	0.0013868	-0.90707	-0.063032	0.021946	0.037076	0.0013388	0.22345	0.10716	0.036088	0.015786	-0.16001	0.11155	-0.0016629	0	-0.0046493	-0.041295	0.07815	-0.11542	-0.0020784	0.011332	0.15816	-0.19112	0.12623	-0.024251	-0.0015243	0.0063871	-0.00056095	0.39496	0.0025671	0.00016585	0.037858	0.61952	0.050305	0.22422	-0.00013862	0.0055484	0.42895	0.10434	
Deletion Peak 12 - CN values	9p21.3  	chr9:21865498-21996995(probes 843258:843321)      	chr9:21959052-21977193(probes 843309:843310)        	chr9:19386566-28416171(probes 841453:847294)        	2.9278e-23	 2.9278e-23		Actual Copy Change Given	-0.6465	0.00041593	-0.0079581	-0.0024938	-0.67315	-0.27703	-0.021035	-0.50873	-0.49967	-0.23472	-0.15067	-0.74803	-0.57269	-0.47554	-0.14901	-0.69351	-0.038034	-1.1999	-1.1451	0.066445	-0.62131	-0.29118	-0.11755	-0.85662	-0.0008316	-0.88527	-0.0081624	-0.0016629	-0.22527	0.0015255	-0.070343	-0.023566	-0.040825	-0.15873	-0.49392	-0.053341	-0.01037	-0.84155	-0.13199	-0.00069303	-0.14648	-0.0060409	-0.72341	-0.16357	-0.63461	-0.92301	-0.098238	-0.78488	-0.16914	-0.1092	-0.060076	-0.33606	-0.36102	-0.13114	-0.45982	-0.64626	-0.0031588	-0.022469	-0.88989	0.013772	-0.62665	-0.043873	-0.073877	-0.36181	-0.30097	
Deletion Peak 13 - CN values	10q23.2 	chr10:86084854-89735596(probes 948012:950268)    	chr10:88018950-88030549(probes 949401:949402)      	chr10:87542271-88109286(probes 949038:949457)      	0.057755	   0.057755		Actual Copy Change Given	0.0066898	0.0077783	0.027076	0.0032255	-0.00048465	0.0023819	0.0034753	-0.46808	0.004275	0.19466	-0.14631	-0.027945	0.19482	-0.47247	-0.075745	-0.6332	0	0.016811	0.0079175	0.051574	-0.28727	-0.35065	-0.17148	-0.0044312	0.0020805	0.0073747	-0.0019399	-0.00013862	0.011425	0.012237	-0.067934	-0.0049844	0.00083195	-0.16434	0.00052412	0.0019478	-0.0048327	0.031155	0.025952	0	-0.064125	-0.00035719	0.0022193	-0.09578	0.050392	-0.034223	-0.024661	-0.20224	0.010842	-0.071071	0	-0.024114	-0.36022	-0.11888	0.017415	-1.1883	-0.068904	0.060508	-0.19093	-0.0047079	-0.21057	-0.006505	0.00055459	0.046275	0.0048579	
Deletion Peak 14 - CN values	11p15.4 	chr11:1-8622541(probes 978779:983111)               	chr11:4563048-4907215(probes 980385:980640)          	chr11:1-10077602(probes 978779:983931)               	0.013803	   0.014863		Actual Copy Change Given	0.033549	0	0.0012481	-0.0008316	-0.0042469	-0.25805	0.0016708	-0.48129	0.011233	-0.15157	-0.056173	-0.0029091	-0.079609	-0.48649	0.0087528	0.015587	-0.0036011	-0.00049703	0.0047629	-0.0091959	0	0.015587	-0.26479	0.0098669	0.0015255	0	0	-0.0008316	0	-0.043059	0.01174	0.018943	0.00083195	0.060365	-0.0022168	0.0024969	-0.015741	0	-0.099341	0.001803	0.029842	0.001348	-0.019941	-0.28311	0	0.0026357	-0.10013	0.075703	0.21978	0.09188	-0.0041546	-0.13471	-0.012713	-0.15311	-0.38772	-0.31055	0.003496	-0.097079	0.0375	-0.040209	0.16046	-0.013677	-0.019726	-0.37189	0.10351	
Deletion Peak 15 - CN values	12p12.3 	chr12:4374374-22798169(probes 1057892:1068692)    	chr12:15474824-15811655(probes 1064298:1064453)    	chr12:7853480-22548548(probes 1060186:1068580)      	0.048136	   0.048136		Actual Copy Change Given	-0.62893	-0.0018014	0.0030522	-0.0075624	0.012655	0.003191	0.0056985	0.0086715	-0.2356	-0.18433	-0.045672	-0.0027707	0.0016642	0.48975	-0.046854	-0.021784	-0.0080244	0.47502	-0.58559	0.077792	-0.029584	-0.66956	0.038928	-0.36029	-0.00069551	0.18253	-0.0011087	-0.00027724	0.0040243	-0.010232	-0.033208	0.041175	-0.010094	0.23442	-0.0019399	0.001803	-0.0092666	-0.10026	-0.0073912	-0.0010127	0.029561	0.019282	-0.37392	-0.39328	-0.051451	0.0087528	-0.022881	0.28295	0.036794	0.0090312	0.0091705	0.010044	0.0070826	-0.069874	-0.3685	0.0047893	-0.003574	-0.043737	0.11038	-0.022195	-0.19875	-0.015466	0.00083195	0.51899	-0.084793	
Deletion Peak 16 - CN values	12q12   	chr12:31809739-53193414(probes 1074574:1083239)  	chr12:40148348-40501364(probes 1076069:1076331)    	chr12:40323642-40324141(probes 1076201:1076202)    	0.051807	   0.075974		Actual Copy Change Given	-0.034495	-0.0018014	0.00013863	-0.0019399	0.012655	0.003191	0.0056985	-0.92216	-0.11132	0.23876	-0.056442	-0.0027707	0.0016642	-0.46897	-0.046854	-0.66938	0.011958	0.44484	-0.0045695	0.077792	-0.029584	0.1619	0.038928	0.020343	-0.00069551	0.19542	-0.0011087	-0.00027724	0.0040243	-0.010232	-0.033208	0.041175	-0.010094	0.23442	-0.0019399	0.001803	-0.0092666	-0.29827	-0.0073912	-0.0010127	0.029561	0.019282	1.9619	0	0.10598	-0.0022168	-0.022881	0.28295	0.036794	0.0090312	0.0091705	0.014051	-0.35658	-0.069874	-0.36263	-0.3095	-0.003574	-0.043737	-0.21973	-0.022195	-0.19875	-0.015466	0.00083195	0.41228	-0.084793	
Deletion Peak 17 - CN values	12q24.31	chr12:71510065-133851895(probes 1094258:1130044)	chr12:121437721-121456000(probes 1124696:1124711)	chr12:121446747-121449755(probes 1124704:1124705)	0.055768	    0.06764		Actual Copy Change Given	0.015308	-0.0018014	-0.0017159	-0.0019399	0.0037684	0.003191	0.0056985	-0.014308	-0.11132	-0.2133	-0.078378	0.0086135	0.0016642	-0.48744	-0.046854	-0.67756	0.0077901	-0.073821	-0.0045695	0.072326	-0.029584	-0.31646	-0.011459	-0.0034627	-0.00069551	-0.27989	-0.0011087	-0.00027724	0.0040243	-0.085722	-0.033208	-0.0071958	-0.010094	0.29231	-0.0019399	0.001803	-0.0092666	-0.30814	-0.0073912	-0.00055444	0.0098368	0.019282	-0.39319	0	0.16986	-0.0022168	-0.024251	0.27143	0.036794	0.0086135	0.0091705	-0.33084	0.0024969	-0.14813	-0.35613	-0.3095	0.0032183	-0.043737	-0.21973	-0.022195	-0.19875	-0.015466	0.00083195	-0.15503	-1.2836	
Deletion Peak 18 - CN values	15q15.1 	chr15:1-56540308(probes 1236192:1253744)         	chr15:40328974-41586765(probes 1244511:1245085)    	chr15:40350132-40351716(probes 1244520:1244521)    	0.17844	    0.18337		Actual Copy Change Given	0.089127	-0.0015781	-0.0029309	0.003191	0.029606	0.00041593	-0.0011022	-0.46574	0.018216	-0.080275	-0.15349	0.0022193	-0.022332	0.022964	-0.041838	0.013353	-0.0087146	-0.53506	0.0095883	0.16078	-0.27655	-0.68031	-0.25575	-0.0011087	0.00055459	-0.29296	0.011958	-0.0013858	-0.0040162	-0.093535	-0.06326	-0.010497	-0.069541	-0.38582	-0.0012473	0.0066653	0.0038934	-0.024114	-0.068261	0.0015255	0.021978	-0.0017428	-0.0030475	0.078727	-0.054555	-0.30874	0.045168	0.061365	-0.040247	-0.099077	-0.0076101	0.015308	-0.36567	-0.0025003	0.018243	-0.0050527	0.0023853	0.10519	-0.2368	-0.021647	-0.18194	0.0052749	0.004719	-0.11325	-0.29933	
Deletion Peak 19 - CN values	17p11.2 	chr17:1-81195210(probes 1321557:1358559)           	chr17:17322053-17328279(probes 1329760:1329766)    	chr17:17325326-17328110(probes 1329764:1329765)    	0.24007	    0.23657		Actual Copy Change Given	-0.60729	0.00055459	0.0023581	0.00083195	-0.33063	-0.011611	-0.029714	-0.56381	-0.15569	-0.18647	-0.038986	-0.0012473	0.013772	-0.47757	-0.082402	-0.0087146	-0.027945	-0.54467	0.0076392	-0.036468	-0.63547	-0.32588	0.0083502	-0.4108	-0.0024938	-0.29378	-0.0016629	-0.0038779	-0.077345	-0.011473	-1.0631	-0.020824	-0.019314	-0.39297	-0.24849	-0.0044312	-0.021784	-0.16103	-0.073209	-0.00055444	-0.036718	0.0020005	0.54965	-0.20477	-0.15003	-0.55877	0.019643	-0.19962	-0.046989	0.0043021	0.0086135	-0.31541	-0.37144	-0.039808	-0.38022	-0.023359	-0.041404	-0.11011	-0.035721	0.019923	-0.23187	-0.027343	-0.038578	-0.3685	-0.29579	
Deletion Peak 20 - CN values	17q22   	chr17:48940134-81195210(probes 1341511:1358559)  	chr17:56426873-56498380(probes 1346271:1346306)    	chr17:51946191-59971369(probes 1343096:1347908)    	0.051807	   0.051807		Actual Copy Change Given	-0.60729	0.00055459	0.0023581	0.00083195	0.021744	-0.011611	-0.029714	-0.52936	-0.15569	-0.18647	-0.038986	-0.0012473	0.013772	0.018613	-0.082402	-0.0087146	-0.027945	-0.54991	0.0076392	-0.036468	0.047126	-0.32461	0.30792	-0.38246	-0.0024938	-0.29662	-0.0016629	-0.0038779	-0.077345	-0.011473	0.0095106	-0.020824	-0.019314	-0.39196	0	-0.0044312	0.0056919	-0.16103	-0.073209	-0.00055444	-0.036718	0.0020005	-0.019803	-0.27212	0.2653	-0.56873	0.019643	-0.20062	-0.046989	0.0043021	0.0086135	-0.31541	-0.011198	-0.039808	-0.38022	-0.315	-0.13365	0.031155	-0.035721	-0.017666	0.16445	-0.0029091	-0.038578	-0.36759	0.082621	
Deletion Peak 21 - CN values	18p11.32	chr18:1-5797711(probes 1358560:1361451)             	chr18:1-894241(probes 1358560:1358603)                 	chr18:1-340962(probes 1358560:1358567)                 	0.20802	    0.21147		Actual Copy Change Given	0.026795	-0.096968	-0.03504	-0.017116	-0.34366	-0.19962	-0.0087081	-0.48308	-0.088665	-0.096968	0.43716	-0.010922	-0.0019399	-0.46664	-0.018628	0.030732	-0.16701	0.022222	-0.00069303	-0.11711	-0.5793	0.8691	-0.30426	0.33577	0.00069327	-0.0091286	-0.015466	-0.0030475	0.19269	-0.10644	-0.12363	-0.024524	-0.029857	-0.04048	-0.15643	-0.017391	-0.056712	0.24684	-0.12421	0.0063871	-0.17276	-0.0064465	0.017963	-0.19487	-0.36612	0.0030522	0	-0.067458	-0.08094	-0.30498	-0.019863	-0.011887	-0.007472	-0.14362	-0.38224	0.0015957	-0.05857	-0.18697	-0.21614	-0.047936	0.12653	-0.0077482	-0.053071	0.50255	-0.28615	
Deletion Peak 22 - CN values	18q12.1 	chr18:22038543-59223753(probes 1368576:1392015)  	chr18:25529088-25766994(probes 1370937:1371080)    	chr18:22792867-29734592(probes 1369156:1373399)    	0.044425	   0.057755		Actual Copy Change Given	-0.65435	-0.096968	-0.03504	-0.017116	0.22746	-0.19962	-0.0087081	-0.52053	-0.088665	-0.35168	-0.24545	-0.013206	-0.29508	-0.46664	-0.27476	-0.68451	-0.16701	-0.60144	-0.59361	-0.11711	-0.95457	-0.31307	0.011973	-0.34159	0.00069327	-0.0091286	-0.015466	-0.0030475	-0.23006	-0.10644	-0.12999	-0.024524	-0.029857	-0.04048	-0.15643	-0.017391	-0.056712	-0.29933	-0.12421	0.0063871	-0.17276	-0.0064465	-0.37685	-0.19487	-0.44102	-0.0016629	0	-0.067458	-0.16536	-0.31342	-0.019863	-0.35527	0.34356	-0.16052	0.024969	0.046772	-0.05857	-0.18697	-0.21614	-0.11024	-0.39819	-0.0077482	-0.10118	-0.63595	-0.27822	
Deletion Peak 23 - CN values	18q21.2 	chr18:48514396-48920689(probes 1385162:1385489)  	chr18:48552482-48616860(probes 1385184:1385309)    	chr18:36133799-67408207(probes 1377447:1396628)    	1.5584e-06	 2.0298e-05		Actual Copy Change Given	-1.1369	-0.096968	-0.03504	-0.032725	-0.62817	-0.19962	-0.0087081	-0.52053	-0.12734	-0.41762	-0.24545	-0.013206	-0.29508	-0.46664	-0.27476	-0.69486	-0.16701	-0.60144	-0.59087	-0.11711	-0.96409	-0.31307	-0.29365	-0.34159	0.00069327	-0.0091286	-0.015466	-0.0030475	-0.23006	-0.10644	-0.12999	-0.024524	-0.050742	-0.41619	-0.15643	-0.017391	-0.056712	-0.29933	-0.12421	0.0063871	-0.17276	-0.0064465	-0.37685	-0.26412	-0.44102	-0.57763	0	-0.067458	-0.17319	-0.31342	-0.019863	-0.35316	-0.37335	-0.16052	-0.78681	-0.65057	-0.05857	-0.18697	-0.21614	-0.11024	-0.41773	-0.039369	-0.12253	-0.64481	-0.70091	
Deletion Peak 24 - CN values	19q13.33	chr19:41333271-59128983(probes 1418106:1425203)  	chr19:48312828-48468788(probes 1420906:1420933)    	chr19:48334899-48338546(probes 1420911:1420912)    	0.21208	    0.21147		Actual Copy Change Given	0.10031	0.0019418	0.016006	0.0024969	0.012516	-0.014641	-0.0017243	0.27812	0.022838	-0.21057	0.080168	-0.00097017	0.0072217	0.026654	-0.043466	0.59116	0.048688	0.53861	-0.90487	-0.03238	0.34518	-0.036401	0.33369	-0.00055444	-0.00013862	0.22237	0.012237	0.0065262	-0.012438	0.0077783	0.13176	-0.0030475	0.01419	-0.091155	-0.0070576	-0.0076101	0.01433	0.097833	0.037641	-0.0048461	0.021838	-0.0011886	-0.38325	-0.2862	0.09667	0.019363	0.058081	-0.18055	0.039902	0.021323	0.01433	-0.29319	-0.029175	-0.12642	0.33122	-0.010438	-0.0034356	0.004719	0.034677	0.22746	-0.033132	-0.00038112	-0.007472	0.10031	-0.048207	
Deletion Peak 25 - CN values	21q22.11	chr21:1-48129895(probes 1462505:1483095)         	chr21:32487918-32935111(probes 1473378:1473702)    	chr21:32716703-32720448(probes 1473541:1473542)    	0.18958	          1		Actual Copy Change Given	0	-0.014366	0.0066653	-0.0047079	0.00597	-0.0038779	0.0018096	-0.52712	-0.1045	-0.33729	-0.14831	-0.0088526	-0.0037395	-0.47617	-0.14157	-0.69974	-0.092478	-0.0038205	0.0033299	-0.0969	-0.61153	0	-0.27797	-0.27523	-0.0048461	-0.58343	0.0076392	-0.0016629	1.0274	0.099142	-0.056517	-0.03245	-0.070269	-0.19036	-0.005814	-0.0047079	-0.007472	-0.28703	-0.10053	-0.0027707	0.017638	0.0038053	0.0048579	-0.20759	-0.058462	-0.3432	-0.05496	-0.44243	-0.086916	-0.11247	-0.1316	0.0068044	-0.0067813	-0.14978	-0.4504	-0.30539	-0.0063397	-0.006505	-0.047936	0.040468	-0.030267	-0.0038779	-0.014778	0.0034687	-0.098682	
Deletion Peak 26 - CN values	21q22.11	chr21:1-48129895(probes 1462505:1483095)         	chr21:32487918-32935111(probes 1473378:1473702)    	chr21:32716703-32720448(probes 1473541:1473542)    	0.18958	    0.18337		Actual Copy Change Given	0	-0.014366	0.0066653	-0.0047079	0.00597	-0.0038779	0.0018096	-0.52712	-0.1045	-0.33729	-0.14831	-0.0088526	-0.0037395	-0.47617	-0.14157	-0.69974	-0.092478	-0.0038205	0.0033299	-0.0969	-0.61153	0	-0.27797	-0.27523	-0.0048461	-0.58343	0.0076392	-0.0016629	1.0274	0.099142	-0.056517	-0.03245	-0.070269	-0.19036	-0.005814	-0.0047079	-0.007472	-0.28703	-0.10053	-0.0027707	0.017638	0.0038053	0.0048579	-0.20759	-0.058462	-0.3432	-0.05496	-0.44243	-0.086916	-0.11247	-0.1316	0.0068044	-0.0067813	-0.14978	-0.4504	-0.30539	-0.0063397	-0.006505	-0.047936	0.040468	-0.030267	-0.0038779	-0.014778	0.0034687	-0.098682	
Deletion Peak 27 - CN values	22q13.31	chr22:42660882-51304566(probes 1495416:1500032)  	chr22:46300770-46512954(probes 1497823:1497878)    	chr22:44789060-47196302(probes 1496777:1498296)    	0.048136	   0.048136		Actual Copy Change Given	-0.62159	-0.0063668	-0.0059522	-0.0030274	-0.080275	-0.25079	-0.010364	0.33471	-0.1944	-0.22724	0.14013	0.0012481	-0.076812	-0.45672	0.023698	-0.015191	-0.071338	0.011737	0.016006	-0.098351	0.047694	-0.016591	0.012391	-0.3592	-0.006505	0.20137	-0.00097017	-0.0015243	-0.032041	-0.052126	-0.047335	-0.037762	-0.0018014	-0.40202	-0.016704	-0.070536	-0.010922	-0.51579	-0.033814	-0.0008316	-0.0095874	-0.0058937	-0.0073339	-0.24057	-0.069198	-0.5795	-0.02384	-0.54138	-0.020992	-0.10316	0.001803	0.036229	-0.39096	-0.019046	-0.39775	-0.0057764	-0.00025003	-0.0095426	0.015587	-0.11767	0.15801	0.00097064	-0.03885	-0.37144	-0.098744	
Deletion Peak 28 - CN values	Xq21.1  	chrX:1-149685409(probes 1500033:1562245)          	chrX:9426965-149685409(probes 1501396:1562245)      	chrX:9480454-9594545(probes 1501445:1501535)          	0.18958	    0.20725		Actual Copy Change Given	-0.15208	-0.013264	0.015028	-0.018078	-0.017803	-0.03817	0.011407	-0.038793	-0.038197	-0.046041	0.014051	-0.033977	-0.0091286	-0.16548	-0.010508	-0.1968	0.01447	-0.023783	-0.0080244	0.030382	-0.078411	-0.15643	-0.17574	-0.062764	-0.00070692	-0.0123	0.0079175	-0.00038911	-0.020338	-0.0019399	0.12154	0.0015822	-0.015466	0.05153	-0.014778	0.0015255	-0.0021732	-0.021784	0.17748	0.0041632	-0.012345	0.00044491	-0.050235	-0.011198	0.055088	-0.060345	0.015587	0.01447	-0.0088526	-0.029038	0.00069327	-0.10828	0.048688	-0.038992	-0.1508	-0.075811	-0.0068924	0.010982	-0.024112	0.014749	0.041458	-0.0049844	-0.0096806	-0.047801	-0.039396	
