| GDAC_IntersectSamples1 mirnafile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN12-TP/4394673/GDAC_MergeDataFiles_4397774/PANCAN12-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt |
| GDAC_IntersectSamples1 mrnafile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN12-TP/4394535/GDAC_MergeDataFiles_4397709/PANCAN12-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt |
| GDAC_CorrelateGenes2 threshold | -0.3 |
| GDAC_DirectTargets3 mapfile | file:/xchip/cga/reference/miR_predictions/human_interactions.predicted.v2.txt |
| Execution Times: | |
| Submitted: | 12:17:21 02-10-13 |
| Completed: | |
| Elapsed: | 00 hrs 06 mins 15 secs |
step 1. GDAC_IntersectSamples [id: 475306]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00115:25
| mirnafile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN12-TP/4394673/GDAC_MergeDataFiles_4397774/PANCAN12-TP.mirna__h_mirna_8x15kv2__unc_edu__Level_3__unc_DWD_Batch_adjusted__data.data.txt |
| mrnafile | file:/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_MergeDataFilesPipeline/PANCAN12-TP/4394535/GDAC_MergeDataFiles_4397709/PANCAN12-TP.transcriptome__ht_hg_u133a__broad_mit_edu__Level_3__gene_rma__data.data.txt |
| outputprefix | gdac_intersectsamples |
| Output Files: | |
| mirnafile.txt | |
| mrnafile.txt | |
| gdac_intersectsamples.samples.txt | |
| gdac_intersectsamples.mirna.gct | |
| gdac_intersectsamples.summary.gct | |
| gdac_intersectsamples.mrna.gct | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 12:17:21 02-10-13 |
| Completed: | 12:18:18 02-10-13 |
| Elapsed: | 00 hrs 00 mins 57 secs |
step 2. GDAC_CorrelateGenes [id: 475307]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00116:22
| mirnafile | gdac_intersectsamples.mirna.gct |
| mrnafile | gdac_intersectsamples.mrna.gct |
| threshold | -0.3 |
| outputprefix | gdac_correlategenes |
| Output Files: | |
| gdac_correlategenes.summary.gct | |
| gdac_correlategenes.corr.txt | |
| gdac_correlategenes.corr.all.txt | |
| .lsf.out | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 12:17:21 02-10-13 |
| Completed: | 12:21:58 02-10-13 |
| Elapsed: | 00 hrs 04 mins 36 secs |
step 3. GDAC_DirectTargets [id: 475308]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00117:21
| mapfile | file:/xchip/cga/reference/miR_predictions/human_interactions.predicted.v2.txt |
| corrfile | gdac_correlategenes.corr.txt |
| outputprefix | gdac_directtargets |
| Execution Times: | |
| Submitted: | 12:17:21 02-10-13 |
| Completed: | 12:22:44 02-10-13 |
| Elapsed: | 00 hrs 05 mins 22 secs |
step 4. GDAC_miRDirectTargetsReport [id: 475309]
urn:lsid:broadinstitute.org:cancer.genome.analysis:00144:40
| summaryfile | gdac_intersectsamples.summary.gct |
| cgsummaryfile | gdac_correlategenes.summary.gct |
| dtsummaryfile | gdac_directtargets.summary.gct |
| mirdistrfile | gdac_directtargets.mir.distr |
| genedistrfile | gdac_directtargets.mrna.distr |
| mirtopnodes | gdac_directtargets.mirna.topnodes |
| mrnatopnodes | gdac_directtargets.mrna.topnodes |
| directtargetscorr | gdac_directtargets.corr.txt |
| directtargetscorr3db | gdac_directtargets.corr.3db.txt |
| directtargetsmirna | gdac_directtargets.mirna.sortednodes |
| directtargetsmrna | gdac_directtargets.mrna.sortednodes |
| Output Files: | |
| db_distr.PNG | |
| mir_edges.PNG | |
| db_distr_hires.PNG | |
| nozzle.html | |
| mrna_edges.PNG | |
| mrna_edges_hires.PNG | |
| mir_edges_hires.PNG | |
| .lsf.out | |
| nozzle.RData | |
| stdout.txt | |
| Execution Times: | |
| Submitted: | 12:17:21 02-10-13 |
| Completed: | 12:23:35 02-10-13 |
| Elapsed: | 00 hrs 06 mins 13 secs |