
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> source("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/CNV2ClinicalAnalysis_nozzle_onlysig.R")
> result <- main("/xchip/tcga/gdac_prod/applications/tcga-gdac-genepattern/gp-3.2.4-9272/Tomcat/../../taskLib/Correlate_Cluster_cnvs_onlysig.4.4139/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-iD=/xchip/cga/gdac-prod/tcga-gdac-genepattern/jobResults/476350/all_lesions.conf_99.cnv.cluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering_new/PRAD-TP/4430172/PRAD-TP.transferedmergedcluster.txt", "-fF=ALL", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=PRAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=PRAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  

nPatients in clinical file=248, in cluster file=197, common to both=197
[1]  46 197
[1] "Amp Peak  1(1q21.3)"
[1] 3
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           17                           180 
      AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE 
                           17                           180 
[1] "Amp Peak  2(3q26.2)"
[1] 3
      AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE 
                           31                           166 
      AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE 
                           31                           166 
[1] "Amp Peak  3(7p15.3)"
[1] 3
      AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE 
                           38                           159 
      AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE 
                           38                           159 
[1] "Amp Peak  4(7q34)"
[1] 3
      AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE 
                         35                         162 
      AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE 
                         35                         162 
[1] "Amp Peak  5(8p11.22)"
[1] 3
      AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE 
                            20                            177 
      AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE 
                            20                            177 
[1] "Amp Peak  6(8q24.21)"
[1] 3
      AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE 
                            52                            145 
      AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE 
                            52                            145 
[1] "Amp Peak  7(9q34.3)"
[1] 3
      AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE 
                           20                           177 
      AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE 
                           20                           177 
[1] "Amp Peak  8(11q13.2)"
[1] 3
      AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE 
                            12                            185 
      AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE 
                            12                            185 
[1] "Amp Peak  9(12q24.32)"
[1] 3
      AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE 
                              7                             190 
      AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE 
                              7                             190 
[1] "Amp Peak 10(14q21.1)"
[1] 3
      AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE 
                            12                            185 
      AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE 
                            12                            185 
[1] "Amp Peak 11(20q13.33)"
[1] 3
      AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE 
                             13                             184 
      AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE 
                             13                             184 
[1] "Amp Peak 12(Xp22.11)"
[1] 3
      AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE 
                             7                            190 
      AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE 
                             7                            190 
[1] "Amp Peak 13(Xp22.11)"
[1] 3
      AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE 
                             7                            190 
      AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE 
                             7                            190 
[1] "Amp Peak 14(Xp21.1)"
[1] 3
      AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE 
                            6                           191 
      AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE 
                            6                           191 
[1] "Amp Peak 15(Xq12)"
[1] 3
      AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE 
                          4                         193 
      AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE 
                          4                         193 
[1] "Amp Peak 16(Xq21.1)"
[1] 3
      AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE 
                            7                           190 
      AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE 
                            7                           190 
[1] "Amp Peak 17(Xq21.1)"
[1] 3
      AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE 
                            5                           192 
      AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE 
                            5                           192 
[1] "Amp Peak 18(Xq21.31)"
[1] 3
      AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE 
                             5                            192 
      AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE 
                             5                            192 
[1] "Amp Peak 19(Xq25)"
[1] 3
      AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE 
                          4                         193 
      AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE 
                          4                         193 
[1] "Amp Peak 20(Xq25)"
[1] 3
      AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE 
                          6                         191 
      AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE 
                          6                         191 
[1] "Amp Peak 21(Xq27.1)"
[1] 3
      AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE 
                            9                           188 
      AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE 
                            9                           188 
[1] "Del Peak  1(1p31.3)"
[1] 3
      DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE 
                           25                           172 
      DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE 
                           25                           172 
[1] "Del Peak  2(1q42.13)"
[1] 3
      DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE 
                            18                            179 
      DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE 
                            18                            179 
[1] "Del Peak  3(2q22.1)"
[1] 3
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                           24                           173 
      DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE 
                           24                           173 
[1] "Del Peak  4(3p13)"
[1] 3
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                         29                         168 
      DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE 
                         29                         168 
[1] "Del Peak  5(3q29)"
[1] 3
      DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE 
                         14                         183 
      DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE 
                         14                         183 
[1] "Del Peak  6(4q28.2)"
[1] 3
      DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE 
                           19                           178 
      DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE 
                           19                           178 
[1] "Del Peak  7(5q11.2)"
[1] 3
      DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE 
                           33                           164 
      DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE 
                           33                           164 
[1] "Del Peak  8(5q21.1)"
[1] 3
      DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE 
                           35                           162 
      DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE 
                           35                           162 
[1] "Del Peak  9(6q15)"
[1] 3
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                         63                         134 
      DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE 
                         63                         134 
[1] "Del Peak 10(7q36.1)"
[1] 3
      DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE 
                           10                           187 
      DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE 
                           10                           187 
[1] "Del Peak 11(8p21.3)"
[1] 3
      DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE 
                          112                            85 
      DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE 
                          112                            85 
[1] "Del Peak 12(8p11.21)"
[1] 3
      DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE 
                            62                            135 
      DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE 
                            62                            135 
[1] "Del Peak 13(9p22.3)"
[1] 3
      DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE 
                           16                           181 
      DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE 
                           16                           181 
[1] "Del Peak 14(10q23.31)"
[1] 3
      DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE 
                             69                             128 
      DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE 
                             69                             128 
[1] "Del Peak 15(11q23.2)"
[1] 3
      DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE 
                            24                            173 
      DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE 
                            24                            173 
[1] "Del Peak 16(12p13.2)"
[1] 3
      DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE 
                            41                            156 
      DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE 
                            41                            156 
[1] "Del Peak 17(13q14.13)"
[1] 3
      DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE 
                             89                             108 
      DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE 
                             89                             108 
[1] "Del Peak 18(16q22.3)"
[1] 3
      DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE 
                            64                            133 
      DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE 
                            64                            133 
[1] "Del Peak 19(16q24.1)"
[1] 3
      DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE 
                            78                            119 
      DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE 
                            78                            119 
[1] "Del Peak 20(17p13.1)"
[1] 3
      DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE 
                            54                            143 
      DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE 
                            54                            143 
[1] "Del Peak 21(17q21.31)"
[1] 3
      DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE 
                             39                             158 
      DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE 
                             39                             158 
[1] "Del Peak 22(18q23)"
[1] 3
      DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE 
                          55                          142 
      DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE 
                          55                          142 
[1] "Del Peak 23(19q13.2)"
[1] 3
      DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE 
                            17                            180 
      DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE 
                            17                            180 
[1] "Del Peak 24(21q22.2)"
[1] 3
      DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE 
                            18                            179 
      DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE 
                            18                            179 
[1] "Del Peak 25(21q22.3)"
[1] 3
      DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE 
                            64                            133 
      DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE 
                            64                            133 
[1] "data2feature, selection=ALL"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 10 rows and 197 columns.

Variable 1:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'MRNASEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_MATURE_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "CN_CNMF"                     "METHLYATION_CNMF"           
 [3] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [5] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [7] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
 [9] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 197 columns, 0 survival variables, and 10 non-survival variables.
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = Amp Peak  1(1q21.3)
D1V1, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       1                            27
  CLUS_2                       2                           106
  CLUS_3                      14                            47
D1V2, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       8                            49
  CLUS_2                       0                            65
  CLUS_3                       9                            66
D1V3, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       0                            41
  CLUS_2                       3                            53
  CLUS_3                      12                            45
D1V4, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       1                            50
  CLUS_2                      11                            47
  CLUS_3                       3                            42
D1V5, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       8                            59
  CLUS_2                       0                            60
  CLUS_3                       9                            58
D1V6, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       6                            43
  CLUS_2                      11                            57
  CLUS_3                       0                            77
D1V7, multiclass
D1V8, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       4                            17
  CLUS_3                       9                            65
  CLUS_4                       2                            65
D1V9, multiclass
D1V10, multiclass
        clus
vv       AMP PEAK  1(1Q21.3) CNV AMP PEAK  1(1Q21.3) WILD-TYPE
  CLUS_1                       6                            72
  CLUS_2                       9                            83
  CLUS_3                       2                            24

Clustering(2) Variable = Amp Peak  2(3q26.2)
D2V1, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                       6                            22
  CLUS_2                       7                           101
  CLUS_3                      18                            43
D2V2, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                      14                            43
  CLUS_2                       6                            59
  CLUS_3                      11                            64
D2V3, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                       8                            33
  CLUS_2                       5                            51
  CLUS_3                      15                            42
D2V4, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                       8                            43
  CLUS_2                      15                            43
  CLUS_3                       5                            40
D2V5, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                      15                            52
  CLUS_2                       6                            54
  CLUS_3                      10                            57
D2V6, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                       8                            41
  CLUS_2                      15                            53
  CLUS_3                       8                            69
D2V7, multiclass
D2V8, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                       7                            27
  CLUS_2                       7                            14
  CLUS_3                       7                            67
  CLUS_4                       9                            58
D2V9, multiclass
D2V10, multiclass
        clus
vv       AMP PEAK  2(3Q26.2) CNV AMP PEAK  2(3Q26.2) WILD-TYPE
  CLUS_1                      15                            63
  CLUS_2                      10                            82
  CLUS_3                       5                            21

Clustering(3) Variable = Amp Peak  3(7p15.3)
D3V1, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                       7                            21
  CLUS_2                       5                           103
  CLUS_3                      26                            35
D3V2, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                      19                            38
  CLUS_2                       5                            60
  CLUS_3                      14                            61
D3V3, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                       7                            34
  CLUS_2                       9                            47
  CLUS_3                      16                            41
D3V4, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                       8                            43
  CLUS_2                      16                            42
  CLUS_3                       8                            37
D3V5, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                      21                            46
  CLUS_2                       4                            56
  CLUS_3                      13                            54
D3V6, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                      15                            34
  CLUS_2                      14                            54
  CLUS_3                       9                            68
D3V7, multiclass
D3V8, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                       5                            29
  CLUS_2                      10                            11
  CLUS_3                      14                            60
  CLUS_4                       8                            59
D3V9, multiclass
D3V10, multiclass
        clus
vv       AMP PEAK  3(7P15.3) CNV AMP PEAK  3(7P15.3) WILD-TYPE
  CLUS_1                      12                            66
  CLUS_2                      18                            74
  CLUS_3                       7                            19

Clustering(4) Variable = Amp Peak  4(7q34)
D4V1, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                     7                          21
  CLUS_2                     5                         103
  CLUS_3                    23                          38
D4V2, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                    20                          37
  CLUS_2                     3                          62
  CLUS_3                    12                          63
D4V3, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                     7                          34
  CLUS_2                     9                          47
  CLUS_3                    13                          44
D4V4, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                     8                          43
  CLUS_2                    13                          45
  CLUS_3                     8                          37
D4V5, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                    21                          46
  CLUS_2                     3                          57
  CLUS_3                    11                          56
D4V6, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                    16                          33
  CLUS_2                    11                          57
  CLUS_3                     8                          69
D4V7, multiclass
D4V8, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                     5                          29
  CLUS_2                    10                          11
  CLUS_3                    12                          62
  CLUS_4                     7                          60
D4V9, multiclass
D4V10, multiclass
        clus
vv       AMP PEAK  4(7Q34) CNV AMP PEAK  4(7Q34) WILD-TYPE
  CLUS_1                    12                          66
  CLUS_2                    15                          77
  CLUS_3                     7                          19

Clustering(5) Variable = Amp Peak  5(8p11.22)
D5V1, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                        6                             22
  CLUS_2                        0                            108
  CLUS_3                       14                             47
D5V2, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                       10                             47
  CLUS_2                        3                             62
  CLUS_3                        7                             68
D5V3, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                        3                             38
  CLUS_2                        4                             52
  CLUS_3                       10                             47
D5V4, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                        4                             47
  CLUS_2                       10                             48
  CLUS_3                        3                             42
D5V5, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                       13                             54
  CLUS_2                        3                             57
  CLUS_3                        4                             63
D5V6, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                        6                             43
  CLUS_2                       11                             57
  CLUS_3                        3                             74
D5V7, multiclass
D5V8, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                        3                             31
  CLUS_2                        5                             16
  CLUS_3                        8                             66
  CLUS_4                        3                             64
D5V9, multiclass
D5V10, multiclass
        clus
vv       AMP PEAK  5(8P11.22) CNV AMP PEAK  5(8P11.22) WILD-TYPE
  CLUS_1                        7                             71
  CLUS_2                        8                             84
  CLUS_3                        4                             22

Clustering(6) Variable = Amp Peak  6(8q24.21)
D6V1, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                        7                             21
  CLUS_2                        9                             99
  CLUS_3                       36                             25
D6V2, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                       21                             36
  CLUS_2                       11                             54
  CLUS_3                       20                             55
D6V3, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                       11                             30
  CLUS_2                       10                             46
  CLUS_3                       24                             33
D6V4, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                       12                             39
  CLUS_2                       25                             33
  CLUS_3                        8                             37
D6V5, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                       27                             40
  CLUS_2                        8                             52
  CLUS_3                       17                             50
D6V6, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                       18                             31
  CLUS_2                       24                             44
  CLUS_3                       10                             67
D6V7, multiclass
D6V8, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                        7                             27
  CLUS_2                       11                             10
  CLUS_3                       21                             53
  CLUS_4                       12                             55
D6V9, multiclass
D6V10, multiclass
        clus
vv       AMP PEAK  6(8Q24.21) CNV AMP PEAK  6(8Q24.21) WILD-TYPE
  CLUS_1                       22                             56
  CLUS_2                       21                             71
  CLUS_3                        8                             18

Clustering(7) Variable = Amp Peak  7(9q34.3)
D7V1, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       1                            27
  CLUS_2                       3                           105
  CLUS_3                      16                            45
D7V2, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       7                            50
  CLUS_2                       3                            62
  CLUS_3                      10                            65
D7V3, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       4                            37
  CLUS_2                       2                            54
  CLUS_3                       9                            48
D7V4, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       5                            46
  CLUS_2                       9                            49
  CLUS_3                       1                            44
D7V5, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       8                            59
  CLUS_2                       4                            56
  CLUS_3                       8                            59
D7V6, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       3                            46
  CLUS_2                      11                            57
  CLUS_3                       6                            71
D7V7, multiclass
D7V8, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       1                            33
  CLUS_2                       5                            16
  CLUS_3                       4                            70
  CLUS_4                       9                            58
D7V9, multiclass
D7V10, multiclass
        clus
vv       AMP PEAK  7(9Q34.3) CNV AMP PEAK  7(9Q34.3) WILD-TYPE
  CLUS_1                       9                            69
  CLUS_2                       7                            85
  CLUS_3                       3                            23

Clustering(8) Variable = Amp Peak  8(11q13.2)
D8V1, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        0                             28
  CLUS_2                        2                            106
  CLUS_3                       10                             51
D8V2, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        5                             52
  CLUS_2                        1                             64
  CLUS_3                        6                             69
D8V3, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        1                             40
  CLUS_2                        3                             53
  CLUS_3                        5                             52
D8V4, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        1                             50
  CLUS_2                        5                             53
  CLUS_3                        3                             42
D8V5, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        8                             59
  CLUS_2                        1                             59
  CLUS_3                        3                             64
D8V6, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        4                             45
  CLUS_2                        6                             62
  CLUS_3                        2                             75
D8V7, multiclass
D8V8, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        2                             32
  CLUS_2                        3                             18
  CLUS_3                        4                             70
  CLUS_4                        2                             65
D8V9, multiclass
D8V10, multiclass
        clus
vv       AMP PEAK  8(11Q13.2) CNV AMP PEAK  8(11Q13.2) WILD-TYPE
  CLUS_1                        3                             75
  CLUS_2                        6                             86
  CLUS_3                        2                             24

Clustering(9) Variable = Amp Peak  9(12q24.32)
D9V1, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         0                              28
  CLUS_2                         1                             107
  CLUS_3                         6                              55
D9V2, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         4                              53
  CLUS_2                         2                              63
  CLUS_3                         1                              74
D9V3, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         1                              40
  CLUS_2                         1                              55
  CLUS_3                         5                              52
D9V4, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         1                              50
  CLUS_2                         5                              53
  CLUS_3                         1                              44
D9V5, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         3                              64
  CLUS_2                         2                              58
  CLUS_3                         2                              65
D9V6, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         0                              49
  CLUS_2                         5                              63
  CLUS_3                         2                              75
D9V7, multiclass
D9V8, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         1                              33
  CLUS_2                         1                              20
  CLUS_3                         1                              73
  CLUS_4                         3                              64
D9V9, multiclass
D9V10, multiclass
        clus
vv       AMP PEAK  9(12Q24.32) CNV AMP PEAK  9(12Q24.32) WILD-TYPE
  CLUS_1                         5                              73
  CLUS_2                         1                              91
  CLUS_3                         0                              26

Clustering(10) Variable = Amp Peak 10(14q21.1)
D10V1, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                        4                             24
  CLUS_2                        1                            107
  CLUS_3                        7                             54
D10V2, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                        8                             49
  CLUS_2                        1                             64
  CLUS_3                        3                             72
D10V3, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                        1                             40
  CLUS_2                        2                             54
  CLUS_3                        7                             50
D10V4, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                        1                             50
  CLUS_2                        7                             51
  CLUS_3                        2                             43
D10V5, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                       10                             57
  CLUS_2                        0                             60
  CLUS_3                        2                             65
D10V6, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                        5                             44
  CLUS_2                        5                             63
  CLUS_3                        2                             75
D10V7, multiclass
D10V8, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                        3                             31
  CLUS_2                        5                             16
  CLUS_3                        3                             71
  CLUS_4                        1                             66
D10V9, multiclass
D10V10, multiclass
        clus
vv       AMP PEAK 10(14Q21.1) CNV AMP PEAK 10(14Q21.1) WILD-TYPE
  CLUS_1                        6                             72
  CLUS_2                        4                             88
  CLUS_3                        2                             24

Clustering(11) Variable = Amp Peak 11(20q13.33)
D11V1, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                         1                              27
  CLUS_2                         3                             105
  CLUS_3                         9                              52
D11V2, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                        10                              47
  CLUS_2                         1                              64
  CLUS_3                         2                              73
D11V3, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                         2                              39
  CLUS_2                         6                              50
  CLUS_3                         4                              53
D11V4, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                         3                              48
  CLUS_2                         4                              54
  CLUS_3                         5                              40
D11V5, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                         9                              58
  CLUS_2                         1                              59
  CLUS_3                         3                              64
D11V6, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                         8                              41
  CLUS_2                         3                              65
  CLUS_3                         2                              75
D11V7, multiclass
D11V8, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                         4                              30
  CLUS_2                         2                              19
  CLUS_3                         6                              68
  CLUS_4                         1                              66
D11V9, multiclass
D11V10, multiclass
        clus
vv       AMP PEAK 11(20Q13.33) CNV AMP PEAK 11(20Q13.33) WILD-TYPE
  CLUS_1                         6                              72
  CLUS_2                         6                              86
  CLUS_3                         1                              25

Clustering(12) Variable = Amp Peak 12(Xp22.11)
D12V1, multiclass
        clus
vv       AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE
  CLUS_1                        0                             28
  CLUS_2                        2                            106
  CLUS_3                        5                             56
D12V2, multiclass
        clus
vv       AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE
  CLUS_1                        2                             55
  CLUS_2                        2                             63
  CLUS_3                        3                             72
D12V3, multiclass
[1] "Remove cluster labels:"   "AMP PEAK 12(XP22.11) CNV"
clus
      AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE 
                             2                            152 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5748 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5750                     TCGA-CH-5751 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5752                     TCGA-CH-5753 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5754                     TCGA-CH-5761 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5762                     TCGA-CH-5763 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5764                     TCGA-CH-5765 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5766                     TCGA-CH-5767 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5768                     TCGA-CH-5769 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5771                     TCGA-CH-5772 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5788                     TCGA-CH-5789 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5790                     TCGA-CH-5791 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5792                     TCGA-CH-5794 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5494                     TCGA-EJ-5495 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5496                     TCGA-EJ-5497 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5498                     TCGA-EJ-5499 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5501                     TCGA-EJ-5502 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5503                     TCGA-EJ-5504 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5505                     TCGA-EJ-5506 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5507                     TCGA-EJ-5508 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5509                     TCGA-EJ-5510 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5511                     TCGA-EJ-5512 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5514                     TCGA-EJ-5515 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5516                     TCGA-EJ-5517 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5518                     TCGA-EJ-5519 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5521                     TCGA-EJ-5522 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5524                     TCGA-EJ-5525 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5526                     TCGA-EJ-5527 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5530                     TCGA-EJ-5531 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5532                     TCGA-EJ-5542 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7115                     TCGA-EJ-7125 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7321 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7791                     TCGA-EJ-7792 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7793                     TCGA-EJ-7794 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7797                     TCGA-EJ-8468 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8469                     TCGA-EJ-8470 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8474                     TCGA-EJ-A46B 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46D                     TCGA-EJ-A46E 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46F                     TCGA-FC-7708 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-FC-A4JI                     TCGA-G9-6329 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6338                     TCGA-G9-6342 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6343                     TCGA-G9-6351 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6370 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6371                     TCGA-G9-6373 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6377                     TCGA-G9-6378 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6384                     TCGA-G9-6494 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-7510                     TCGA-G9-7521 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-7522                     TCGA-G9-7523 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-7525                     TCGA-H9-7775 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7077                     TCGA-HC-7079 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7081                     TCGA-HC-7210 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7211                     TCGA-HC-7212 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7213                     TCGA-HC-7232 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7233                     TCGA-HC-7736 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7740                     TCGA-HC-7744 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7748                     TCGA-HC-8264 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HI-7168                     TCGA-HI-7169 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HI-7170                     TCGA-HI-7171 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-J4-8198                     TCGA-J9-A52C 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-J9-A52E                     TCGA-KC-A4BL 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BN                     TCGA-KC-A4BO 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BR                     TCGA-KC-A4BV 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-KK-A59Y                     TCGA-KK-A59Z 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
D12V4, multiclass
[1] "Remove cluster labels:"   "AMP PEAK 12(XP22.11) CNV"
clus
      AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE 
                             2                            152 
                    TCGA-CH-5737                     TCGA-CH-5738 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5739                     TCGA-CH-5740 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5741                     TCGA-CH-5743 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5744                     TCGA-CH-5748 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5750                     TCGA-CH-5751 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5752                     TCGA-CH-5753 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5754                     TCGA-CH-5761 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5762                     TCGA-CH-5763 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5764                     TCGA-CH-5765 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5766                     TCGA-CH-5767 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5768                     TCGA-CH-5769 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5771                     TCGA-CH-5772 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5788                     TCGA-CH-5789 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5790                     TCGA-CH-5791 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-CH-5792                     TCGA-CH-5794 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5494                     TCGA-EJ-5495 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5496                     TCGA-EJ-5497 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5498                     TCGA-EJ-5499 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5501                     TCGA-EJ-5502 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5503                     TCGA-EJ-5504 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5505                     TCGA-EJ-5506 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5507                     TCGA-EJ-5508 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5509                     TCGA-EJ-5510 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5511                     TCGA-EJ-5512 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5514                     TCGA-EJ-5515 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5516                     TCGA-EJ-5517 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5518                     TCGA-EJ-5519 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5521                     TCGA-EJ-5522 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5524                     TCGA-EJ-5525 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5526                     TCGA-EJ-5527 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5530                     TCGA-EJ-5531 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-5532                     TCGA-EJ-5542 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7115                     TCGA-EJ-7125 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7314                     TCGA-EJ-7315 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7317                     TCGA-EJ-7321 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7328                     TCGA-EJ-7330 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7331                     TCGA-EJ-7781 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7782                     TCGA-EJ-7783 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7784                     TCGA-EJ-7785 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7786                     TCGA-EJ-7788 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7791                     TCGA-EJ-7792 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7793                     TCGA-EJ-7794 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-7797                     TCGA-EJ-8468 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8469                     TCGA-EJ-8470 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-8474                     TCGA-EJ-A46B 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46D                     TCGA-EJ-A46E 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-EJ-A46F                     TCGA-FC-7708 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-FC-A4JI                     TCGA-G9-6329 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6338                     TCGA-G9-6342 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6343                     TCGA-G9-6351 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6353                     TCGA-G9-6356 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6361                     TCGA-G9-6362 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6363                     TCGA-G9-6364 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6365                     TCGA-G9-6366 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6367                     TCGA-G9-6370 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6371                     TCGA-G9-6373 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6377                     TCGA-G9-6378 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6384                     TCGA-G9-6494 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-6496                     TCGA-G9-6499 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-7510                     TCGA-G9-7521 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-7522                     TCGA-G9-7523 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-G9-7525                     TCGA-H9-7775 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7077                     TCGA-HC-7079 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7081                     TCGA-HC-7210 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7211                     TCGA-HC-7212 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7213                     TCGA-HC-7232 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7233                     TCGA-HC-7736 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7740                     TCGA-HC-7744 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HC-7748                     TCGA-HC-8264 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HI-7168                     TCGA-HI-7169 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-HI-7170                     TCGA-HI-7171 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-J4-8198                     TCGA-J9-A52C 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-J9-A52E                     TCGA-KC-A4BL 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BN                     TCGA-KC-A4BO 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-KC-A4BR                     TCGA-KC-A4BV 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
                    TCGA-KK-A59Y                     TCGA-KK-A59Z 
"AMP PEAK 12(XP22.11) WILD-TYPE" "AMP PEAK 12(XP22.11) WILD-TYPE" 
D12V5, multiclass
        clus
vv       AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE
  CLUS_1                        4                             63
  CLUS_2                        2                             58
  CLUS_3                        1                             66
D12V6, multiclass
        clus
vv       AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE
  CLUS_1                        2                             47
  CLUS_2                        3                             65
  CLUS_3                        2                             75
D12V7, multiclass
D12V8, multiclass
        clus
vv       AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE
  CLUS_1                        0                             34
  CLUS_2                        2                             19
  CLUS_3                        5                             69
  CLUS_4                        0                             67
D12V9, multiclass
D12V10, multiclass
        clus
vv       AMP PEAK 12(XP22.11) CNV AMP PEAK 12(XP22.11) WILD-TYPE
  CLUS_1                        0                             78
  CLUS_2                        5                             87
  CLUS_3                        2                             24

Clustering(13) Variable = Amp Peak 13(Xp22.11)
D13V1, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        0                             28
  CLUS_2                        2                            106
  CLUS_3                        5                             56
D13V2, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        2                             55
  CLUS_2                        3                             62
  CLUS_3                        2                             73
D13V3, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        3                             38
  CLUS_2                        0                             56
  CLUS_3                        2                             55
D13V4, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        3                             48
  CLUS_2                        2                             56
  CLUS_3                        0                             45
D13V5, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        4                             63
  CLUS_2                        1                             59
  CLUS_3                        2                             65
D13V6, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        2                             47
  CLUS_2                        3                             65
  CLUS_3                        2                             75
D13V7, multiclass
D13V8, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        2                             32
  CLUS_2                        2                             19
  CLUS_3                        2                             72
  CLUS_4                        1                             66
D13V9, multiclass
D13V10, multiclass
        clus
vv       AMP PEAK 13(XP22.11) CNV AMP PEAK 13(XP22.11) WILD-TYPE
  CLUS_1                        3                             75
  CLUS_2                        2                             90
  CLUS_3                        2                             24

Clustering(14) Variable = Amp Peak 14(Xp21.1)
D14V1, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       0                            28
  CLUS_2                       2                           106
  CLUS_3                       4                            57
D14V2, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       2                            55
  CLUS_2                       0                            65
  CLUS_3                       4                            71
D14V3, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       1                            40
  CLUS_2                       1                            55
  CLUS_3                       3                            54
D14V4, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       1                            50
  CLUS_2                       3                            55
  CLUS_3                       1                            44
D14V5, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       3                            64
  CLUS_2                       1                            59
  CLUS_3                       2                            65
D14V6, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       1                            48
  CLUS_2                       3                            65
  CLUS_3                       2                            75
D14V7, multiclass
D14V8, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       1                            33
  CLUS_2                       2                            19
  CLUS_3                       1                            73
  CLUS_4                       2                            65
D14V9, multiclass
D14V10, multiclass
        clus
vv       AMP PEAK 14(XP21.1) CNV AMP PEAK 14(XP21.1) WILD-TYPE
  CLUS_1                       3                            75
  CLUS_2                       1                            91
  CLUS_3                       2                            24

Clustering(15) Variable = Amp Peak 15(Xq12)
D15V1, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     0                          28
  CLUS_2                     1                         107
  CLUS_3                     3                          58
D15V2, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     3                          54
  CLUS_2                     0                          65
  CLUS_3                     1                          74
D15V3, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     0                          41
  CLUS_2                     2                          54
  CLUS_3                     2                          55
D15V4, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     0                          51
  CLUS_2                     2                          56
  CLUS_3                     2                          43
D15V5, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     4                          63
  CLUS_2                     0                          60
  CLUS_3                     0                          67
D15V6, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     2                          47
  CLUS_2                     2                          66
  CLUS_3                     0                          77
D15V7, multiclass
D15V8, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     1                          33
  CLUS_2                     1                          20
  CLUS_3                     2                          72
  CLUS_4                     0                          67
D15V9, multiclass
D15V10, multiclass
        clus
vv       AMP PEAK 15(XQ12) CNV AMP PEAK 15(XQ12) WILD-TYPE
  CLUS_1                     1                          77
  CLUS_2                     3                          89
  CLUS_3                     0                          26

Clustering(16) Variable = Amp Peak 16(Xq21.1)
D16V1, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       1                            27
  CLUS_2                       1                           107
  CLUS_3                       5                            56
D16V2, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       3                            54
  CLUS_2                       0                            65
  CLUS_3                       4                            71
D16V3, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       2                            39
  CLUS_2                       1                            55
  CLUS_3                       4                            53
D16V4, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       1                            50
  CLUS_2                       4                            54
  CLUS_3                       2                            43
D16V5, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       3                            64
  CLUS_2                       0                            60
  CLUS_3                       4                            63
D16V6, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       2                            47
  CLUS_2                       4                            64
  CLUS_3                       1                            76
D16V7, multiclass
D16V8, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       1                            33
  CLUS_2                       0                            21
  CLUS_3                       2                            72
  CLUS_4                       4                            63
D16V9, multiclass
D16V10, multiclass
        clus
vv       AMP PEAK 16(XQ21.1) CNV AMP PEAK 16(XQ21.1) WILD-TYPE
  CLUS_1                       5                            73
  CLUS_2                       2                            90
  CLUS_3                       0                            26

Clustering(17) Variable = Amp Peak 17(Xq21.1)
D17V1, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       1                            27
  CLUS_2                       1                           107
  CLUS_3                       3                            58
D17V2, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       5                            52
  CLUS_2                       0                            65
  CLUS_3                       0                            75
D17V3, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       0                            41
  CLUS_2                       1                            55
  CLUS_3                       3                            54
D17V4, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       1                            50
  CLUS_2                       2                            56
  CLUS_3                       1                            44
D17V5, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       3                            64
  CLUS_2                       1                            59
  CLUS_3                       1                            66
D17V6, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       2                            47
  CLUS_2                       2                            66
  CLUS_3                       1                            76
D17V7, multiclass
D17V8, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       0                            34
  CLUS_2                       0                            21
  CLUS_3                       3                            71
  CLUS_4                       2                            65
D17V9, multiclass
D17V10, multiclass
        clus
vv       AMP PEAK 17(XQ21.1) CNV AMP PEAK 17(XQ21.1) WILD-TYPE
  CLUS_1                       2                            76
  CLUS_2                       3                            89
  CLUS_3                       0                            26

Clustering(18) Variable = Amp Peak 18(Xq21.31)
D18V1, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        0                             28
  CLUS_2                        1                            107
  CLUS_3                        4                             57
D18V2, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        2                             55
  CLUS_2                        1                             64
  CLUS_3                        2                             73
D18V3, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        1                             40
  CLUS_2                        1                             55
  CLUS_3                        3                             54
D18V4, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        1                             50
  CLUS_2                        3                             55
  CLUS_3                        1                             44
D18V5, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        3                             64
  CLUS_2                        0                             60
  CLUS_3                        2                             65
D18V6, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        2                             47
  CLUS_2                        3                             65
  CLUS_3                        0                             77
D18V7, multiclass
D18V8, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        1                             33
  CLUS_2                        1                             20
  CLUS_3                        2                             72
  CLUS_4                        1                             66
D18V9, multiclass
D18V10, multiclass
        clus
vv       AMP PEAK 18(XQ21.31) CNV AMP PEAK 18(XQ21.31) WILD-TYPE
  CLUS_1                        3                             75
  CLUS_2                        2                             90
  CLUS_3                        0                             26

Clustering(19) Variable = Amp Peak 19(Xq25)
D19V1, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     0                          28
  CLUS_2                     1                         107
  CLUS_3                     3                          58
D19V2, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     2                          55
  CLUS_2                     2                          63
  CLUS_3                     0                          75
D19V3, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     0                          41
  CLUS_2                     2                          54
  CLUS_3                     1                          56
D19V4, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     1                          50
  CLUS_2                     1                          57
  CLUS_3                     1                          44
D19V5, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     2                          65
  CLUS_2                     2                          58
  CLUS_3                     0                          67
D19V6, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     1                          48
  CLUS_2                     1                          67
  CLUS_3                     2                          75
D19V7, multiclass
D19V8, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     0                          34
  CLUS_2                     0                          21
  CLUS_3                     4                          70
  CLUS_4                     0                          67
D19V9, multiclass
D19V10, multiclass
        clus
vv       AMP PEAK 19(XQ25) CNV AMP PEAK 19(XQ25) WILD-TYPE
  CLUS_1                     0                          78
  CLUS_2                     4                          88
  CLUS_3                     0                          26

Clustering(20) Variable = Amp Peak 20(Xq25)
D20V1, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     1                          27
  CLUS_2                     2                         106
  CLUS_3                     3                          58
D20V2, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     3                          54
  CLUS_2                     1                          64
  CLUS_3                     2                          73
D20V3, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     1                          40
  CLUS_2                     2                          54
  CLUS_3                     3                          54
D20V4, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     1                          50
  CLUS_2                     3                          55
  CLUS_3                     2                          43
D20V5, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     3                          64
  CLUS_2                     3                          57
  CLUS_3                     0                          67
D20V6, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     2                          47
  CLUS_2                     1                          67
  CLUS_3                     3                          74
D20V7, multiclass
D20V8, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     0                          34
  CLUS_2                     0                          21
  CLUS_3                     2                          72
  CLUS_4                     4                          63
D20V9, multiclass
D20V10, multiclass
        clus
vv       AMP PEAK 20(XQ25) CNV AMP PEAK 20(XQ25) WILD-TYPE
  CLUS_1                     4                          74
  CLUS_2                     2                          90
  CLUS_3                     0                          26

Clustering(21) Variable = Amp Peak 21(Xq27.1)
D21V1, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       2                            26
  CLUS_2                       4                           104
  CLUS_3                       3                            58
D21V2, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       4                            53
  CLUS_2                       1                            64
  CLUS_3                       4                            71
D21V3, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       1                            40
  CLUS_2                       5                            51
  CLUS_3                       2                            55
D21V4, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       1                            50
  CLUS_2                       3                            55
  CLUS_3                       4                            41
D21V5, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       4                            63
  CLUS_2                       2                            58
  CLUS_3                       3                            64
D21V6, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       2                            47
  CLUS_2                       4                            64
  CLUS_3                       3                            74
D21V7, multiclass
D21V8, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       0                            21
  CLUS_3                       7                            67
  CLUS_4                       0                            67
D21V9, multiclass
D21V10, multiclass
        clus
vv       AMP PEAK 21(XQ27.1) CNV AMP PEAK 21(XQ27.1) WILD-TYPE
  CLUS_1                       0                            78
  CLUS_2                       9                            83
  CLUS_3                       0                            26

Clustering(22) Variable = Del Peak  1(1p31.3)
D22V1, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       2                            26
  CLUS_2                      10                            98
  CLUS_3                      13                            48
D22V2, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       6                            51
  CLUS_2                       1                            64
  CLUS_3                      18                            57
D22V3, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       5                            36
  CLUS_2                       5                            51
  CLUS_3                       9                            48
D22V4, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       5                            46
  CLUS_2                       8                            50
  CLUS_3                       6                            39
D22V5, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       7                            60
  CLUS_2                       2                            58
  CLUS_3                      16                            51
D22V6, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       5                            44
  CLUS_2                      18                            50
  CLUS_3                       2                            75
D22V7, multiclass
D22V8, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       5                            16
  CLUS_3                      12                            62
  CLUS_4                       6                            61
D22V9, multiclass
D22V10, multiclass
        clus
vv       DEL PEAK  1(1P31.3) CNV DEL PEAK  1(1P31.3) WILD-TYPE
  CLUS_1                       7                            71
  CLUS_2                      15                            77
  CLUS_3                       3                            23

Clustering(23) Variable = Del Peak  2(1q42.13)
D23V1, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                        2                             26
  CLUS_2                        8                            100
  CLUS_3                        8                             53
D23V2, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                       11                             46
  CLUS_2                        1                             64
  CLUS_3                        6                             69
D23V3, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                        4                             37
  CLUS_2                        5                             51
  CLUS_3                        4                             53
D23V4, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                        7                             44
  CLUS_2                        5                             53
  CLUS_3                        1                             44
D23V5, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                        7                             60
  CLUS_2                        4                             56
  CLUS_3                        7                             60
D23V6, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                        6                             43
  CLUS_2                        6                             62
  CLUS_3                        6                             71
D23V7, multiclass
D23V8, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                        3                             31
  CLUS_2                        1                             20
  CLUS_3                       10                             64
  CLUS_4                        4                             63
D23V9, multiclass
D23V10, multiclass
        clus
vv       DEL PEAK  2(1Q42.13) CNV DEL PEAK  2(1Q42.13) WILD-TYPE
  CLUS_1                        8                             70
  CLUS_2                       10                             82
  CLUS_3                        0                             26

Clustering(24) Variable = Del Peak  3(2q22.1)
D24V1, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       9                            19
  CLUS_2                       3                           105
  CLUS_3                      12                            49
D24V2, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      14                            43
  CLUS_2                       1                            64
  CLUS_3                       9                            66
D24V3, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       4                            37
  CLUS_2                       1                            55
  CLUS_3                      12                            45
D24V4, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       4                            47
  CLUS_2                      12                            46
  CLUS_3                       1                            44
D24V5, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      13                            54
  CLUS_2                       3                            57
  CLUS_3                       8                            59
D24V6, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                      10                            39
  CLUS_2                      11                            57
  CLUS_3                       3                            74
D24V7, multiclass
D24V8, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       4                            17
  CLUS_3                      17                            57
  CLUS_4                       1                            66
D24V9, multiclass
D24V10, multiclass
        clus
vv       DEL PEAK  3(2Q22.1) CNV DEL PEAK  3(2Q22.1) WILD-TYPE
  CLUS_1                       3                            75
  CLUS_2                      18                            74
  CLUS_3                       3                            23

Clustering(25) Variable = Del Peak  4(3p13)
D25V1, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     2                          26
  CLUS_2                    19                          89
  CLUS_3                     8                          53
D25V2, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     3                          54
  CLUS_2                     9                          56
  CLUS_3                    17                          58
D25V3, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     6                          35
  CLUS_2                    10                          46
  CLUS_3                     7                          50
D25V4, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     8                          43
  CLUS_2                     8                          50
  CLUS_3                     7                          38
D25V5, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     6                          61
  CLUS_2                     8                          52
  CLUS_3                    15                          52
D25V6, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     4                          45
  CLUS_2                    15                          53
  CLUS_3                    10                          67
D25V7, multiclass
D25V8, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                     4                          30
  CLUS_2                     2                          19
  CLUS_3                    12                          62
  CLUS_4                    11                          56
D25V9, multiclass
D25V10, multiclass
        clus
vv       DEL PEAK  4(3P13) CNV DEL PEAK  4(3P13) WILD-TYPE
  CLUS_1                    18                          60
  CLUS_2                    10                          82
  CLUS_3                     1                          25

Clustering(26) Variable = Del Peak  5(3q29)
D26V1, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     1                          27
  CLUS_2                     8                         100
  CLUS_3                     5                          56
D26V2, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     2                          55
  CLUS_2                     2                          63
  CLUS_3                    10                          65
D26V3, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     3                          38
  CLUS_2                     4                          52
  CLUS_3                     3                          54
D26V4, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     2                          49
  CLUS_2                     4                          54
  CLUS_3                     4                          41
D26V5, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     4                          63
  CLUS_2                     1                          59
  CLUS_3                     9                          58
D26V6, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     4                          45
  CLUS_2                     7                          61
  CLUS_3                     3                          74
D26V7, multiclass
D26V8, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     2                          32
  CLUS_2                     3                          18
  CLUS_3                     6                          68
  CLUS_4                     3                          64
D26V9, multiclass
D26V10, multiclass
        clus
vv       DEL PEAK  5(3Q29) CNV DEL PEAK  5(3Q29) WILD-TYPE
  CLUS_1                     4                          74
  CLUS_2                     7                          85
  CLUS_3                     3                          23

Clustering(27) Variable = Del Peak  6(4q28.2)
D27V1, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                       5                            23
  CLUS_2                       1                           107
  CLUS_3                      13                            48
D27V2, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                      13                            44
  CLUS_2                       0                            65
  CLUS_3                       6                            69
D27V3, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                       2                            39
  CLUS_2                       2                            54
  CLUS_3                       9                            48
D27V4, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                       2                            49
  CLUS_2                       9                            49
  CLUS_3                       2                            43
D27V5, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                      12                            55
  CLUS_2                       1                            59
  CLUS_3                       6                            61
D27V6, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                       8                            41
  CLUS_2                       8                            60
  CLUS_3                       3                            74
D27V7, multiclass
D27V8, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                       3                            31
  CLUS_2                       4                            17
  CLUS_3                       9                            65
  CLUS_4                       2                            65
D27V9, multiclass
D27V10, multiclass
        clus
vv       DEL PEAK  6(4Q28.2) CNV DEL PEAK  6(4Q28.2) WILD-TYPE
  CLUS_1                       4                            74
  CLUS_2                      12                            80
  CLUS_3                       2                            24

Clustering(28) Variable = Del Peak  7(5q11.2)
D28V1, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                       5                            23
  CLUS_2                       9                            99
  CLUS_3                      19                            42
D28V2, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                      17                            40
  CLUS_2                       2                            63
  CLUS_3                      14                            61
D28V3, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                       3                            38
  CLUS_2                       6                            50
  CLUS_3                      18                            39
D28V4, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                       6                            45
  CLUS_2                      17                            41
  CLUS_3                       4                            41
D28V5, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                      15                            52
  CLUS_2                       4                            56
  CLUS_3                      14                            53
D28V6, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                      10                            39
  CLUS_2                      18                            50
  CLUS_3                       5                            72
D28V7, multiclass
D28V8, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       8                            13
  CLUS_3                      13                            61
  CLUS_4                       9                            58
D28V9, multiclass
D28V10, multiclass
        clus
vv       DEL PEAK  7(5Q11.2) CNV DEL PEAK  7(5Q11.2) WILD-TYPE
  CLUS_1                      12                            66
  CLUS_2                      17                            75
  CLUS_3                       3                            23

Clustering(29) Variable = Del Peak  8(5q21.1)
D29V1, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                      14                            14
  CLUS_2                       2                           106
  CLUS_3                      19                            42
D29V2, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                      25                            32
  CLUS_2                       2                            63
  CLUS_3                       8                            67
D29V3, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                       6                            35
  CLUS_2                       6                            50
  CLUS_3                      15                            42
D29V4, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                       9                            42
  CLUS_2                      14                            44
  CLUS_3                       4                            41
D29V5, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                      21                            46
  CLUS_2                       6                            54
  CLUS_3                       8                            59
D29V6, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                      15                            34
  CLUS_2                      13                            55
  CLUS_3                       7                            70
D29V7, multiclass
D29V8, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                       3                            31
  CLUS_2                       7                            14
  CLUS_3                      14                            60
  CLUS_4                      10                            57
D29V9, multiclass
D29V10, multiclass
        clus
vv       DEL PEAK  8(5Q21.1) CNV DEL PEAK  8(5Q21.1) WILD-TYPE
  CLUS_1                      12                            66
  CLUS_2                      19                            73
  CLUS_3                       3                            23

Clustering(30) Variable = Del Peak  9(6q15)
D30V1, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    21                           7
  CLUS_2                    12                          96
  CLUS_3                    30                          31
D30V2, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    36                          21
  CLUS_2                     3                          62
  CLUS_3                    24                          51
D30V3, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    14                          27
  CLUS_2                     7                          49
  CLUS_3                    27                          30
D30V4, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    17                          34
  CLUS_2                    24                          34
  CLUS_3                     7                          38
D30V5, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    35                          32
  CLUS_2                     6                          54
  CLUS_3                    22                          45
D30V6, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    25                          24
  CLUS_2                    29                          39
  CLUS_3                     9                          68
D30V7, multiclass
D30V8, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    10                          24
  CLUS_2                    12                           9
  CLUS_3                    29                          45
  CLUS_4                    11                          56
D30V9, multiclass
D30V10, multiclass
        clus
vv       DEL PEAK  9(6Q15) CNV DEL PEAK  9(6Q15) WILD-TYPE
  CLUS_1                    22                          56
  CLUS_2                    33                          59
  CLUS_3                     7                          19

Clustering(31) Variable = Del Peak 10(7q36.1)
D31V1, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       1                            27
  CLUS_2                       4                           104
  CLUS_3                       5                            56
D31V2, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       2                            55
  CLUS_2                       3                            62
  CLUS_3                       5                            70
D31V3, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       1                            40
  CLUS_2                       0                            56
  CLUS_3                       4                            53
D31V4, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       1                            50
  CLUS_2                       4                            54
  CLUS_3                       0                            45
D31V5, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       4                            63
  CLUS_2                       2                            58
  CLUS_3                       4                            63
D31V6, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       2                            47
  CLUS_2                       5                            63
  CLUS_3                       3                            74
D31V7, multiclass
D31V8, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       0                            34
  CLUS_2                       2                            19
  CLUS_3                       4                            70
  CLUS_4                       4                            63
D31V9, multiclass
D31V10, multiclass
        clus
vv       DEL PEAK 10(7Q36.1) CNV DEL PEAK 10(7Q36.1) WILD-TYPE
  CLUS_1                       5                            73
  CLUS_2                       4                            88
  CLUS_3                       1                            25

Clustering(32) Variable = Del Peak 11(8p21.3)
D32V1, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      10                            18
  CLUS_2                      52                            56
  CLUS_3                      50                            11
D32V2, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      31                            26
  CLUS_2                      21                            44
  CLUS_3                      60                            15
D32V3, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      21                            20
  CLUS_2                      26                            30
  CLUS_3                      43                            14
D32V4, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      28                            23
  CLUS_2                      42                            16
  CLUS_3                      20                            25
D32V5, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      35                            32
  CLUS_2                      24                            36
  CLUS_3                      53                            14
D32V6, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      23                            26
  CLUS_2                      55                            13
  CLUS_3                      34                            43
D32V7, multiclass
D32V8, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      14                            20
  CLUS_2                      15                             6
  CLUS_3                      49                            25
  CLUS_4                      33                            34
D32V9, multiclass
D32V10, multiclass
        clus
vv       DEL PEAK 11(8P21.3) CNV DEL PEAK 11(8P21.3) WILD-TYPE
  CLUS_1                      49                            29
  CLUS_2                      56                            36
  CLUS_3                       6                            20

Clustering(33) Variable = Del Peak 12(8p11.21)
D33V1, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                        1                             27
  CLUS_2                       35                             73
  CLUS_3                       26                             35
D33V2, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                       16                             41
  CLUS_2                        9                             56
  CLUS_3                       37                             38
D33V3, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                       14                             27
  CLUS_2                       16                             40
  CLUS_3                       19                             38
D33V4, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                       17                             34
  CLUS_2                       20                             38
  CLUS_3                       12                             33
D33V5, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                       19                             48
  CLUS_2                       10                             50
  CLUS_3                       33                             34
D33V6, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                       15                             34
  CLUS_2                       31                             37
  CLUS_3                       16                             61
D33V7, multiclass
D33V8, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                        9                             25
  CLUS_2                        6                             15
  CLUS_3                       28                             46
  CLUS_4                       19                             48
D33V9, multiclass
D33V10, multiclass
        clus
vv       DEL PEAK 12(8P11.21) CNV DEL PEAK 12(8P11.21) WILD-TYPE
  CLUS_1                       27                             51
  CLUS_2                       32                             60
  CLUS_3                        3                             23

Clustering(34) Variable = Del Peak 13(9p22.3)
D34V1, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       0                            28
  CLUS_2                       3                           105
  CLUS_3                      13                            48
D34V2, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       5                            52
  CLUS_2                       3                            62
  CLUS_3                       8                            67
D34V3, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       1                            40
  CLUS_2                       2                            54
  CLUS_3                      11                            46
D34V4, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       2                            49
  CLUS_2                      11                            47
  CLUS_3                       1                            44
D34V5, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       5                            62
  CLUS_2                       2                            58
  CLUS_3                       9                            58
D34V6, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       2                            47
  CLUS_2                      11                            57
  CLUS_3                       3                            74
D34V7, multiclass
D34V8, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       2                            32
  CLUS_2                       3                            18
  CLUS_3                       6                            68
  CLUS_4                       4                            63
D34V9, multiclass
D34V10, multiclass
        clus
vv       DEL PEAK 13(9P22.3) CNV DEL PEAK 13(9P22.3) WILD-TYPE
  CLUS_1                       7                            71
  CLUS_2                       7                            85
  CLUS_3                       1                            25

Clustering(35) Variable = Del Peak 14(10q23.31)
D35V1, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                         6                              22
  CLUS_2                        26                              82
  CLUS_3                        37                              24
D35V2, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                        15                              42
  CLUS_2                        11                              54
  CLUS_3                        43                              32
D35V3, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                        13                              28
  CLUS_2                        16                              40
  CLUS_3                        27                              30
D35V4, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                        15                              36
  CLUS_2                        26                              32
  CLUS_3                        15                              30
D35V5, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                        15                              52
  CLUS_2                         9                              51
  CLUS_3                        45                              22
D35V6, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                        11                              38
  CLUS_2                        40                              28
  CLUS_3                        18                              59
D35V7, multiclass
D35V8, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                         6                              28
  CLUS_2                         8                              13
  CLUS_3                        31                              43
  CLUS_4                        23                              44
D35V9, multiclass
D35V10, multiclass
        clus
vv       DEL PEAK 14(10Q23.31) CNV DEL PEAK 14(10Q23.31) WILD-TYPE
  CLUS_1                        30                              48
  CLUS_2                        33                              59
  CLUS_3                         5                              21

Clustering(36) Variable = Del Peak 15(11q23.2)
D36V1, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                        4                             24
  CLUS_2                        9                             99
  CLUS_3                       11                             50
D36V2, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                       11                             46
  CLUS_2                        4                             61
  CLUS_3                        9                             66
D36V3, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                        6                             35
  CLUS_2                        5                             51
  CLUS_3                       12                             45
D36V4, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                        6                             45
  CLUS_2                       13                             45
  CLUS_3                        4                             41
D36V5, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                        7                             60
  CLUS_2                        6                             54
  CLUS_3                       11                             56
D36V6, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                        5                             44
  CLUS_2                       11                             57
  CLUS_3                        8                             69
D36V7, multiclass
D36V8, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                        5                             16
  CLUS_3                        9                             65
  CLUS_4                        6                             61
D36V9, multiclass
D36V10, multiclass
        clus
vv       DEL PEAK 15(11Q23.2) CNV DEL PEAK 15(11Q23.2) WILD-TYPE
  CLUS_1                       10                             68
  CLUS_2                       11                             81
  CLUS_3                        3                             23

Clustering(37) Variable = Del Peak 16(12p13.2)
D37V1, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                        4                             24
  CLUS_2                       14                             94
  CLUS_3                       23                             38
D37V2, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                       17                             40
  CLUS_2                        5                             60
  CLUS_3                       19                             56
D37V3, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                        5                             36
  CLUS_2                       11                             45
  CLUS_3                       18                             39
D37V4, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                        9                             42
  CLUS_2                       16                             42
  CLUS_3                        9                             36
D37V5, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                       14                             53
  CLUS_2                        9                             51
  CLUS_3                       18                             49
D37V6, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                        8                             41
  CLUS_2                       21                             47
  CLUS_3                       12                             65
D37V7, multiclass
D37V8, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                        5                             16
  CLUS_3                       19                             55
  CLUS_4                       12                             55
D37V9, multiclass
D37V10, multiclass
        clus
vv       DEL PEAK 16(12P13.2) CNV DEL PEAK 16(12P13.2) WILD-TYPE
  CLUS_1                       18                             60
  CLUS_2                       20                             72
  CLUS_3                        2                             24

Clustering(38) Variable = Del Peak 17(13q14.13)
D38V1, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        17                              11
  CLUS_2                        34                              74
  CLUS_3                        38                              23
D38V2, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        33                              24
  CLUS_2                        14                              51
  CLUS_3                        42                              33
D38V3, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        16                              25
  CLUS_2                        21                              35
  CLUS_3                        32                              25
D38V4, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        23                              28
  CLUS_2                        31                              27
  CLUS_3                        15                              30
D38V5, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        33                              34
  CLUS_2                        14                              46
  CLUS_3                        41                              26
D38V6, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        27                              22
  CLUS_2                        41                              27
  CLUS_3                        20                              57
D38V7, multiclass
D38V8, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        13                              21
  CLUS_2                        12                               9
  CLUS_3                        39                              35
  CLUS_4                        25                              42
D38V9, multiclass
D38V10, multiclass
        clus
vv       DEL PEAK 17(13Q14.13) CNV DEL PEAK 17(13Q14.13) WILD-TYPE
  CLUS_1                        34                              44
  CLUS_2                        46                              46
  CLUS_3                         9                              17

Clustering(39) Variable = Del Peak 18(16q22.3)
D39V1, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                        4                             24
  CLUS_2                       18                             90
  CLUS_3                       42                             19
D39V2, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                       18                             39
  CLUS_2                       12                             53
  CLUS_3                       34                             41
D39V3, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                       12                             29
  CLUS_2                       18                             38
  CLUS_3                       21                             36
D39V4, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                       13                             38
  CLUS_2                       23                             35
  CLUS_3                       15                             30
D39V5, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                       18                             49
  CLUS_2                       13                             47
  CLUS_3                       33                             34
D39V6, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                        9                             40
  CLUS_2                       36                             32
  CLUS_3                       19                             58
D39V7, multiclass
D39V8, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                        6                             28
  CLUS_2                       12                              9
  CLUS_3                       29                             45
  CLUS_4                       16                             51
D39V9, multiclass
D39V10, multiclass
        clus
vv       DEL PEAK 18(16Q22.3) CNV DEL PEAK 18(16Q22.3) WILD-TYPE
  CLUS_1                       21                             57
  CLUS_2                       34                             58
  CLUS_3                        8                             18

Clustering(40) Variable = Del Peak 19(16q24.1)
D40V1, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                        4                             24
  CLUS_2                       24                             84
  CLUS_3                       50                             11
D40V2, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                       21                             36
  CLUS_2                       16                             49
  CLUS_3                       41                             34
D40V3, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                       16                             25
  CLUS_2                       22                             34
  CLUS_3                       25                             32
D40V4, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                       21                             30
  CLUS_2                       26                             32
  CLUS_3                       16                             29
D40V5, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                       22                             45
  CLUS_2                       19                             41
  CLUS_3                       37                             30
D40V6, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                       12                             37
  CLUS_2                       37                             31
  CLUS_3                       29                             48
D40V7, multiclass
D40V8, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                        6                             28
  CLUS_2                       12                              9
  CLUS_3                       34                             40
  CLUS_4                       25                             42
D40V9, multiclass
D40V10, multiclass
        clus
vv       DEL PEAK 19(16Q24.1) CNV DEL PEAK 19(16Q24.1) WILD-TYPE
  CLUS_1                       31                             47
  CLUS_2                       39                             53
  CLUS_3                        7                             19

Clustering(41) Variable = Del Peak 20(17p13.1)
D41V1, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                        3                             25
  CLUS_2                       14                             94
  CLUS_3                       37                             24
D41V2, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                       14                             43
  CLUS_2                       12                             53
  CLUS_3                       28                             47
D41V3, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                        6                             35
  CLUS_2                       13                             43
  CLUS_3                       23                             34
D41V4, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                        8                             43
  CLUS_2                       23                             35
  CLUS_3                       11                             34
D41V5, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                       15                             52
  CLUS_2                       10                             50
  CLUS_3                       29                             38
D41V6, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                        8                             41
  CLUS_2                       33                             35
  CLUS_3                       13                             64
D41V7, multiclass
D41V8, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                       13                              8
  CLUS_3                       20                             54
  CLUS_4                       16                             51
D41V9, multiclass
D41V10, multiclass
        clus
vv       DEL PEAK 20(17P13.1) CNV DEL PEAK 20(17P13.1) WILD-TYPE
  CLUS_1                       21                             57
  CLUS_2                       24                             68
  CLUS_3                        8                             18

Clustering(42) Variable = Del Peak 21(17q21.31)
D42V1, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                         2                              26
  CLUS_2                        14                              94
  CLUS_3                        23                              38
D42V2, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                         4                              53
  CLUS_2                         6                              59
  CLUS_3                        29                              46
D42V3, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                         8                              33
  CLUS_2                         9                              47
  CLUS_3                        14                              43
D42V4, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                        10                              41
  CLUS_2                        13                              45
  CLUS_3                         8                              37
D42V5, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                         9                              58
  CLUS_2                         4                              56
  CLUS_3                        26                              41
D42V6, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                         4                              45
  CLUS_2                        23                              45
  CLUS_3                        12                              65
D42V7, multiclass
D42V8, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                         3                              31
  CLUS_2                         6                              15
  CLUS_3                        17                              57
  CLUS_4                        12                              55
D42V9, multiclass
D42V10, multiclass
        clus
vv       DEL PEAK 21(17Q21.31) CNV DEL PEAK 21(17Q21.31) WILD-TYPE
  CLUS_1                        13                              65
  CLUS_2                        20                              72
  CLUS_3                         5                              21

Clustering(43) Variable = Del Peak 22(18q23)
D43V1, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                      3                           25
  CLUS_2                     18                           90
  CLUS_3                     34                           27
D43V2, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                     17                           40
  CLUS_2                     15                           50
  CLUS_3                     23                           52
D43V3, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                     12                           29
  CLUS_2                     15                           41
  CLUS_3                     16                           41
D43V4, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                     12                           39
  CLUS_2                     17                           41
  CLUS_3                     14                           31
D43V5, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                     18                           49
  CLUS_2                     12                           48
  CLUS_3                     24                           43
D43V6, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                     11                           38
  CLUS_2                     25                           43
  CLUS_3                     18                           59
D43V7, multiclass
D43V8, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                     10                           24
  CLUS_2                      6                           15
  CLUS_3                     21                           53
  CLUS_4                     17                           50
D43V9, multiclass
D43V10, multiclass
        clus
vv       DEL PEAK 22(18Q23) CNV DEL PEAK 22(18Q23) WILD-TYPE
  CLUS_1                     22                           56
  CLUS_2                     27                           65
  CLUS_3                      5                           21

Clustering(44) Variable = Del Peak 23(19q13.2)
D44V1, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        2                             26
  CLUS_2                        5                            103
  CLUS_3                       10                             51
D44V2, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        4                             53
  CLUS_2                        2                             63
  CLUS_3                       11                             64
D44V3, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        2                             39
  CLUS_2                        2                             54
  CLUS_3                        6                             51
D44V4, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        2                             49
  CLUS_2                        6                             52
  CLUS_3                        2                             43
D44V5, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        5                             62
  CLUS_2                        2                             58
  CLUS_3                       10                             57
D44V6, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        3                             46
  CLUS_2                       10                             58
  CLUS_3                        4                             73
D44V7, multiclass
D44V8, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        0                             34
  CLUS_2                        4                             17
  CLUS_3                        9                             65
  CLUS_4                        3                             64
D44V9, multiclass
D44V10, multiclass
        clus
vv       DEL PEAK 23(19Q13.2) CNV DEL PEAK 23(19Q13.2) WILD-TYPE
  CLUS_1                        3                             75
  CLUS_2                       10                             82
  CLUS_3                        3                             23

Clustering(45) Variable = Del Peak 24(21q22.2)
D45V1, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        0                             28
  CLUS_2                        9                             99
  CLUS_3                        9                             52
D45V2, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        4                             53
  CLUS_2                        4                             61
  CLUS_3                       10                             65
D45V3, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        4                             37
  CLUS_2                        4                             52
  CLUS_3                        8                             49
D45V4, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        5                             46
  CLUS_2                        7                             51
  CLUS_3                        4                             41
D45V5, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        3                             64
  CLUS_2                        4                             56
  CLUS_3                       11                             56
D45V6, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        0                             49
  CLUS_2                       12                             56
  CLUS_3                        6                             71
D45V7, multiclass
D45V8, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        2                             32
  CLUS_2                        3                             18
  CLUS_3                        4                             70
  CLUS_4                        8                             59
D45V9, multiclass
D45V10, multiclass
        clus
vv       DEL PEAK 24(21Q22.2) CNV DEL PEAK 24(21Q22.2) WILD-TYPE
  CLUS_1                        8                             70
  CLUS_2                        7                             85
  CLUS_3                        2                             24

Clustering(46) Variable = Del Peak 25(21q22.3)
D46V1, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        1                             27
  CLUS_2                       32                             76
  CLUS_3                       31                             30
D46V2, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        7                             50
  CLUS_2                       10                             55
  CLUS_3                       47                             28
D46V3, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                       14                             27
  CLUS_2                       13                             43
  CLUS_3                       24                             33
D46V4, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                       16                             35
  CLUS_2                       24                             34
  CLUS_3                       11                             34
D46V5, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        6                             61
  CLUS_2                       12                             48
  CLUS_3                       46                             21
D46V6, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        2                             47
  CLUS_2                       40                             28
  CLUS_3                       22                             55
D46V7, multiclass
D46V8, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                        4                             30
  CLUS_2                       13                              8
  CLUS_3                       20                             54
  CLUS_4                       26                             41
D46V9, multiclass
D46V10, multiclass
        clus
vv       DEL PEAK 25(21Q22.3) CNV DEL PEAK 25(21Q22.3) WILD-TYPE
  CLUS_1                       33                             45
  CLUS_2                       23                             69
  CLUS_3                        7                             19
                           V1                            V2 
                    "CN_CNMF"            "METHLYATION_CNMF" 
                           V3                            V4 
                  "RPPA_CNMF"          "RPPA_CHIERARCHICAL" 
                           V5                            V6 
               "MRNASEQ_CNMF"       "MRNASEQ_CHIERARCHICAL" 
                           V7                            V8 
                "MIRSEQ_CNMF"        "MIRSEQ_CHIERARCHICAL" 
                           V9                           V10 
         "MIRSEQ_MATURE_CNMF" "MIRSEQ_MATURE_CHIERARCHICAL" 
> q(save="no")
