CHASM (Cancer-Specific High-throughput Annotation of Somatic Mutations)
Bladder Urothelial Carcinoma (Primary solid tumor)
23 September 2013
|
analyses__2013_09_23
Maintainer Information
Citation Information
Maintained by Spring Yingchun Liu
(Broad Institute)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2013):
CHASM (Cancer-Specific High-throughput Annotation of Somatic Mutations).
Broad Institute of MIT and Harvard.
doi:10.7908/C1474884
Overview
Introduction
Summary
There are 9436 mutations identified by MuTect and 152 mutations with significant functional impact at BHFDR <= 0.25.
Results
Top Mutations
Table 1.
Get Full Table
Top mutations with significant funcational impact.
MutationID: mutation seen in sample.
Mutation: mutation seen in gene and AA variant.
CHASM: CHASM score.
BHFDR: Benjamini-Hochberg False Discovery Rate.
| MutationID | Mutation | CHASM | PValue | BHFDR |
|---|---|---|---|---|
| TCGA-BL-A13J-01A-11D-A10S-08 | NM_001126112.1_Y220C | 0.022 | 0 | 0.05 |
| TCGA-BL-A13J-01A-11D-A10S-08 | NM_001126112.1_Y220C | 0.022 | 0 | 0.05 |
| TCGA-BT-A0S7-01A-11D-A10S-08 | NM_033225.5_Y1508C | 0.13 | 0 | 0.05 |
| TCGA-BT-A0S7-01A-11D-A10S-08 | NM_033225.5_Y1508C | 0.13 | 0 | 0.05 |
| TCGA-BT-A0S7-01A-11D-A10S-08 | ENST00000373198_E1140A | 0.098 | 0 | 0.05 |
Methods & Data
Copyright © 2013
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.