Molecular subtypes	CN_CNMF		METHLYATION_CNMF	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	56	0.58885	1	0.66768	1
1q gain	0 (0%)	46	0.54965	1	0.8159	1
2p gain	0 (0%)	52	0.096478	1	0.2364	1
2q gain	0 (0%)	56	0.022392	1	0.15792	1
3p gain	0 (0%)	54	0.018814	1	0.19066	1
3q gain	0 (0%)	44	0.00026248	0.037	3.5985e-05	0.00511
4p gain	0 (0%)	59	0.34582	1	1	1
5p gain	0 (0%)	43	0.57878	1	0.64477	1
6p gain	0 (0%)	58	0.61091	1	1	1
6q gain	0 (0%)	60	0.011458	1	1	1
7p gain	0 (0%)	35	0.17547	1	0.41335	1
7q gain	0 (0%)	44	0.57292	1	0.32886	1
8p gain	0 (0%)	46	0.31819	1	0.13949	1
8q gain	0 (0%)	37	0.89802	1	0.53833	1
9p gain	0 (0%)	60	0.10841	1	0.30838	1
9q gain	0 (0%)	55	0.24306	1	0.37867	1
10p gain	0 (0%)	57	1	1	0.3909	1
10q gain	0 (0%)	60	0.24263	1	1	1
11p gain	0 (0%)	60	0.011458	1	0.59092	1
11q gain	0 (0%)	60	0.011458	1	0.79187	1
12p gain	0 (0%)	42	0.00060601	0.0842	0.006387	0.856
12q gain	0 (0%)	54	0.095179	1	0.19066	1
13q gain	0 (0%)	55	0.38232	1	0.013985	1
14q gain	0 (0%)	54	0.81348	1	0.10848	1
15q gain	0 (0%)	59	0.66871	1	0.67624	1
16p gain	0 (0%)	58	1	1	0.23405	1
16q gain	0 (0%)	59	0.66871	1	0.4308	1
17p gain	0 (0%)	56	0.0031968	0.435	0.081246	1
17q gain	0 (0%)	56	0.089815	1	0.51271	1
18p gain	0 (0%)	49	0.014742	1	0.07251	1
18q gain	0 (0%)	60	0.60389	1	0.79187	1
19p gain	0 (0%)	60	0.011458	1	0.59092	1
19q gain	0 (0%)	56	0.0049608	0.67	0.25246	1
20p gain	0 (0%)	38	0.76113	1	0.60162	1
20q gain	0 (0%)	36	0.80411	1	0.34156	1
21q gain	0 (0%)	60	0.10841	1	0.30838	1
22q gain	0 (0%)	55	1	1	0.37867	1
Xq gain	0 (0%)	53	0.22065	1	0.02891	1
3p loss	0 (0%)	37	0.58144	1	0.71448	1
3q loss	0 (0%)	59	0.54267	1	0.67624	1
4p loss	0 (0%)	40	0.047077	1	0.019566	1
4q loss	0 (0%)	45	0.13915	1	0.013371	1
5p loss	0 (0%)	54	0.34213	1	0.21399	1
5q loss	0 (0%)	46	0.7218	1	0.019563	1
6p loss	0 (0%)	53	0.29928	1	0.11129	1
6q loss	0 (0%)	56	0.27235	1	0.081246	1
7p loss	0 (0%)	60	0.10841	1	0.30838	1
8p loss	0 (0%)	49	0.80148	1	0.73672	1
8q loss	0 (0%)	57	1	1	0.54672	1
9p loss	0 (0%)	40	0.39984	1	0.14563	1
9q loss	0 (0%)	53	0.22065	1	0.16731	1
10p loss	0 (0%)	50	0.21607	1	0.24004	1
10q loss	0 (0%)	48	0.0021811	0.299	0.017784	1
11p loss	0 (0%)	52	0.12782	1	0.093639	1
11q loss	0 (0%)	47	0.00049237	0.0689	0.0075695	1
12p loss	0 (0%)	55	0.63499	1	0.33789	1
12q loss	0 (0%)	57	0.6409	1	0.091573	1
13q loss	0 (0%)	48	0.027219	1	0.011993	1
14q loss	0 (0%)	56	1	1	0.58204	1
15q loss	0 (0%)	54	0.46919	1	1	1
16p loss	0 (0%)	53	0.10856	1	0.076171	1
16q loss	0 (0%)	52	0.13905	1	0.52515	1
17p loss	0 (0%)	49	0.17401	1	0.00068307	0.0943
18p loss	0 (0%)	51	0.30744	1	0.28169	1
18q loss	0 (0%)	39	0.50973	1	0.083184	1
19p loss	0 (0%)	54	0.13869	1	0.8979	1
19q loss	0 (0%)	57	0.17817	1	0.74966	1
20p loss	0 (0%)	58	0.19345	1	1	1
21q loss	0 (0%)	36	0.7635	1	0.63674	1
22q loss	0 (0%)	52	0.27448	1	0.023708	1
Xq loss	0 (0%)	60	0.78394	1	0.43756	1