Molecular subtypes	CN_CNMF		METHLYATION_CNMF	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
Amp Peak  1(1p34.2)	0 (0%)	50	0.35438	1	0.43961	1
Amp Peak  2(1q42.3)	0 (0%)	30	0.07128	1	0.050779	1
Amp Peak  3(2q14.2)	0 (0%)	43	0.0924	1	0.16661	1
Amp Peak  4(3q26.2)	0 (0%)	15	4.5999e-05	0.00598	0.00015263	0.0197
Amp Peak  5(5p15.33)	0 (0%)	24	0.27424	1	0.1717	1
Amp Peak  6(6p21.1)	0 (0%)	46	0.15015	1	0.93275	1
Amp Peak  7(6q12)	0 (0%)	48	0.52592	1	1	1
Amp Peak  8(7p11.2)	0 (0%)	19	1	1	0.87959	1
Amp Peak  9(7q21.2)	0 (0%)	21	0.021876	1	0.34894	1
Amp Peak 10(8p11.21)	0 (0%)	31	0.76568	1	0.31297	1
Amp Peak 11(8q24.21)	0 (0%)	10	0.18269	1	0.024743	1
Amp Peak 12(10p11.21)	0 (0%)	48	0.52592	1	0.74057	1
Amp Peak 13(11p13)	0 (0%)	45	0.82245	1	0.87427	1
Amp Peak 14(11q13.3)	0 (0%)	24	0.0016595	0.207	0.0059598	0.739
Amp Peak 15(12p13.33)	0 (0%)	32	0.0014867	0.187	0.00080552	0.103
Amp Peak 16(12p12.1)	0 (0%)	28	0.019846	1	0.023944	1
Amp Peak 17(14q22.1)	0 (0%)	41	0.21876	1	0.2597	1
Amp Peak 18(17q12)	0 (0%)	40	0.023743	1	0.41217	1
Amp Peak 19(17q24.3)	0 (0%)	35	0.30522	1	0.41335	1
Amp Peak 20(18p11.32)	0 (0%)	40	0.023743	1	0.58776	1
Amp Peak 21(18q11.2)	0 (0%)	47	0.14791	1	0.28712	1
Amp Peak 22(19p13.2)	0 (0%)	49	0.37472	1	0.30583	1
Amp Peak 23(19p13.11)	0 (0%)	47	0.027156	1	0.60864	1
Amp Peak 24(19q12)	0 (0%)	42	0.14811	1	0.25701	1
Amp Peak 25(Xp11.4)	0 (0%)	51	0.18972	1	0.84303	1
Del Peak  1(1p36.13)	0 (0%)	44	1	1	0.12636	1
Del Peak  2(1p13.2)	0 (0%)	40	0.94573	1	0.4962	1
Del Peak  3(1q44)	0 (0%)	55	0.34308	1	0.4845	1
Del Peak  4(2q22.1)	0 (0%)	47	0.70974	1	0.39157	1
Del Peak  5(2q34)	0 (0%)	47	0.40301	1	0.042315	1
Del Peak  6(3p26.1)	0 (0%)	18	0.16788	1	0.057645	1
Del Peak  7(3p14.3)	0 (0%)	13	0.010768	1	0.025063	1
Del Peak  8(3p14.2)	0 (0%)	12	0.15829	1	0.28169	1
Del Peak  9(3q11.1)	0 (0%)	53	0.74497	1	1	1
Del Peak 10(3q26.31)	0 (0%)	57	0.6409	1	0.091573	1
Del Peak 11(4p15.2)	0 (0%)	28	0.65289	1	0.84539	1
Del Peak 12(4q22.1)	0 (0%)	32	0.65665	1	0.84905	1
Del Peak 13(5q11.2)	0 (0%)	26	0.44035	1	0.0067602	0.832
Del Peak 14(5q12.3)	0 (0%)	24	0.63899	1	0.016824	1
Del Peak 15(6p25.3)	0 (0%)	39	0.94573	1	0.27611	1
Del Peak 16(6q14.2)	0 (0%)	47	0.30664	1	0.80574	1
Del Peak 17(7q31.1)	0 (0%)	42	0.16665	1	0.83233	1
Del Peak 18(7q36.2)	0 (0%)	36	0.22952	1	0.89544	1
Del Peak 19(8p23.2)	0 (0%)	34	0.12242	1	0.54514	1
Del Peak 20(9p21.3)	0 (0%)	11	0.0077985	0.951	0.023708	1
Del Peak 21(10p11.21)	0 (0%)	44	0.25272	1	0.11057	1
Del Peak 22(10q23.31)	0 (0%)	33	0.14645	1	0.2129	1
Del Peak 23(11p15.4)	0 (0%)	35	0.086236	1	0.069324	1
Del Peak 24(11q24.3)	0 (0%)	33	0.0010772	0.137	0.72013	1
Del Peak 25(12q12)	0 (0%)	46	0.7218	1	0.7611	1
Del Peak 26(13q12.11)	0 (0%)	33	0.058078	1	0.072631	1
Del Peak 27(15q13.1)	0 (0%)	45	0.82245	1	0.58729	1
Del Peak 28(16q23.1)	0 (0%)	39	0.044933	1	0.030008	1
Del Peak 29(17q25.3)	0 (0%)	49	0.80148	1	0.92318	1
Del Peak 30(18q12.2)	0 (0%)	28	0.17547	1	0.14944	1
Del Peak 31(18q21.2)	0 (0%)	25	0.11772	1	0.15413	1
Del Peak 32(19p13.3)	0 (0%)	31	0.26433	1	0.64515	1
Del Peak 33(19q13.31)	0 (0%)	43	0.20297	1	0.011142	1
Del Peak 34(20p12.1)	0 (0%)	55	0.1681	1	0.4845	1
Del Peak 35(21q22.12)	0 (0%)	26	0.28294	1	0.28314	1
Del Peak 36(22q11.1)	0 (0%)	37	0.26894	1	0.01669	1
Del Peak 37(Xp22.2)	0 (0%)	36	0.41995	1	0.80435	1
Del Peak 38(Xp21.1)	0 (0%)	35	0.23304	1	0.68099	1
Del Peak 39(Xp11.3)	0 (0%)	32	0.14486	1	0.71983	1
Del Peak 40(Xq21.33)	0 (0%)	49	0.26624	1	0.92318	1