HotNet pathway analysis of mutation and copy number data
Head and Neck Squamous Cell Carcinoma (Primary solid tumor)
23 September 2013
|
analyses__2013_09_23
Maintainer Information
Citation Information
Maintained by Hailei Zhang
(Broad Institute)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2013):
HotNet pathway analysis of mutation and copy number data.
Broad Institute of MIT and Harvard.
doi:10.7908/C10K26VC
Overview
Introduction
Summary
There were 69 significant subnetworks identified in HotNet analysis.
Results
Significant subnetworks
HotNet identifies 69 altered subnetworks based on the matched somatic mutation and copy number alterations data. Table 1 showes the top 10 significant subnetworks.
Table 1. Get Full Table Top 10 out of 69 subnetworks in ranked by p value. The last column of RepeatTimes shows how many times the subnetwork was picked up in differenct delta values.
| Network | No.ofgenes | p-value | RepeatTimes |
|---|---|---|---|
| AP4E1(77),AP4B1(77),BUB1B(77) | 3 | 0 | 3 |
| C7(117),C6(122),C5(104) | 3 | 0 | 3 |
| CCNL2(64),CDK11B(69),TH(97) | 3 | 0 | 3 |
| CHRNA5(74),CHRNB4(74),CHRNA3(73) | 3 | 0 | 3 |
| CNKSR1(66),RALGDS(105),RAP1GAP(66) | 3 | 0 | 3 |
| COL4A4(99),COL4A3(100),SERPINE2(94) | 3 | 0 | 3 |
| COL6A3(102),MMP2(53),LCN2(102) | 3 | 0 | 3 |
| HCN1(120),HCN2(104),HCN4(79) | 3 | 0 | 3 |
| HERC1(85),PKM2(75),TRIM63(65) | 3 | 0 | 3 |
| KCNA1(110),KCNE4(94),KCNQ1(97) | 3 | 0 | 3 |
Methods & Data
Copyright © 2013
Broad Institute TCGA GDAC as part of the TCGA Research Network.
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