CHASM (Cancer-Specific High-throughput Annotation of Somatic Mutations)
Kidney Renal Papillary Cell Carcinoma (Primary solid tumor)
Due to issues with GAF 3.0, we strongly advise caution in the use of these results.
23 September 2013
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analyses__2013_09_23
Maintainer Information
Citation Information
Maintained by Spring Yingchun Liu
(Broad Institute)
Cite as
Broad Institute TCGA Genome Data Analysis Center
(2013):
CHASM (Cancer-Specific High-throughput Annotation of Somatic Mutations).
Broad Institute of MIT and Harvard.
doi:10.7908/C1M90713
Overview
Introduction
Summary
There are 9630 mutations identified by MuTect and 702 mutations with significant functional impact at BHFDR <= 0.25.
Results
Top Mutations
Table 1.
Get Full Table
Top mutations with significant funcational impact.
MutationID: mutation seen in sample.
Mutation: mutation seen in gene and AA variant.
CHASM: CHASM score.
BHFDR: Benjamini-Hochberg False Discovery Rate.
| MutationID | Mutation | CHASM | PValue | BHFDR |
|---|---|---|---|---|
| TCGA-A4-7288-01A-11D-2136-08 | ENST00000401700_E591D | 0.2 | 0 | 0.05 |
| TCGA-A4-7288-01A-11D-2136-08 | ENST00000401700_E591D | 0.2 | 0 | 0.05 |
| TCGA-A4-7585-01A-11D-2136-08 | NM_014396.3_D692V | 0.26 | 0.001 | 0.05 |
| TCGA-A4-7585-01A-11D-2136-08 | NM_014396.3_D692V | 0.26 | 0.001 | 0.05 |
| TCGA-A4-7732-01A-11D-2136-08 | NM_015229.3_L528P | 0.22 | 0 | 0.05 |
Methods & Data
Copyright © 2013
Broad Institute TCGA GDAC as part of the TCGA Research Network.
All rights reserved.