Molecular subtypes	CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p gain	0 (0%)	194	0.049665	1	0.023317	1	0.78075	1	0.63577	1	0.10853	1	0.185	1	0.5656	1	0.267	1	0.0036778	1	0.73579	1
1q gain	0 (0%)	192	0.0040471	1	0.22749	1	0.18926	1	0.12917	1	0.37605	1	0.11846	1	0.40523	1	0.27212	1	0.080665	1	0.69255	1
3p gain	0 (0%)	192	0.55339	1	0.44546	1	0.18926	1	0.12917	1	0.131	1	0.11846	1	0.040424	1	0.024194	1	0.45943	1	0.69255	1
3q gain	0 (0%)	190	0.20046	1	0.29934	1	0.07482	1	0.049914	1	0.018585	1	0.048219	1	0.16177	1	0.0024224	0.695	0.016436	1	0.41306	1
7p gain	0 (0%)	180	9.2835e-08	2.9e-05	0.029855	1	0.045538	1	0.11523	1	0.040966	1	0.034914	1	0.014084	1	0.00027562	0.0821	0.0002045	0.0614	0.13946	1
7q gain	0 (0%)	181	4.1619e-07	0.000129	0.024686	1	0.086579	1	0.21851	1	0.062578	1	0.12366	1	0.010661	1	0.0017683	0.511	0.00010367	0.0313	0.31606	1
8p gain	0 (0%)	186	1.9275e-06	0.000596	0.10858	1	0.00087536	0.255	0.00042459	0.125	0.040277	1	0.0688	1	0.0074797	1	0.0060876	1	0.0036588	1	0.31959	1
8q gain	0 (0%)	173	2.2825e-08	7.14e-06	0.12905	1	0.00024991	0.0747	0.00010727	0.0323	0.0097636	1	0.0061494	1	0.00035085	0.104	1.0091e-05	0.00308	4.5284e-06	0.00139	0.061006	1
9p gain	0 (0%)	194	0.049665	1	0.38447	1	NA	NA	NA	NA	0.7752	1	0.057205	1	0.25985	1	0.5005	1	0.86732	1	1	1
9q gain	0 (0%)	189	0.0040367	1	0.08543	1	0.047882	1	0.063835	1	0.13435	1	0.17562	1	0.38922	1	0.091511	1	0.023076	1	0.53464	1
10q gain	0 (0%)	193	0.1866	1	0.4623	1	0.11332	1	0.11035	1	0.32815	1	0.13121	1	0.65033	1	0.057199	1	0.87435	1	0.6249	1
12q gain	0 (0%)	194	0.55644	1	0.1946	1	0.48396	1	1	1	0.52792	1	1	1	0.93477	1	0.58475	1	0.53531	1	0.73579	1
16p gain	0 (0%)	194	0.049665	1	0.38447	1	0.78075	1	0.63577	1	0.7752	1	0.057205	1	0.5656	1	0.58475	1	0.83729	1	0.73579	1
16q gain	0 (0%)	194	0.049665	1	0.38447	1	0.78075	1	0.63577	1	0.7752	1	0.057205	1	0.5656	1	0.58475	1	0.83729	1	0.73579	1
5q loss	0 (0%)	192	0.0040471	1	0.036185	1	0.45242	1	0.318	1	0.131	1	0.047247	1	0.40523	1	0.010382	1	0.60165	1	1	1
6q loss	0 (0%)	188	0.00073589	0.215	0.065629	1	0.48819	1	0.62852	1	0.082432	1	0.014868	1	0.30588	1	0.15042	1	0.38607	1	0.72238	1
8p loss	0 (0%)	149	0.0034512	0.98	4.2448e-06	0.0013	0.55618	1	0.82374	1	0.00040671	0.12	0.00041304	0.122	1.6575e-05	0.00504	0.48207	1	0.0092039	1	0.084205	1
8q loss	0 (0%)	193	0.1866	1	0.31741	1	0.5615	1	1	1	0.32815	1	0.13121	1	0.26259	1	0.44796	1	0.60486	1	0.36206	1
10p loss	0 (0%)	190	0.010905	1	0.089738	1	0.07482	1	0.049914	1	0.18071	1	0.040061	1	0.21967	1	0.026814	1	0.24636	1	0.41306	1
10q loss	0 (0%)	190	0.010905	1	0.56186	1	0.18926	1	0.12917	1	0.51089	1	0.14977	1	0.25433	1	0.44554	1	0.24636	1	0.41306	1
12p loss	0 (0%)	186	0.01096	1	0.064448	1	0.23092	1	0.62852	1	0.033984	1	0.020769	1	0.24131	1	0.27145	1	0.34804	1	0.69095	1
13q loss	0 (0%)	182	3.1058e-06	0.000957	0.05406	1	0.006058	1	0.019394	1	0.0098039	1	0.021079	1	0.24269	1	0.14396	1	0.26217	1	0.54264	1
15q loss	0 (0%)	194	0.049665	1	0.023317	1	0.78075	1	0.63577	1	0.10853	1	0.185	1	0.55302	1	0.04519	1	0.003774	1	0.51222	1
16p loss	0 (0%)	193	0.018007	1	0.0064902	1	NA	NA	NA	NA	0.035318	1	0.17804	1	0.0092278	1	0.04519	1	0.003774	1	0.046813	1
16q loss	0 (0%)	169	8.6389e-09	2.71e-06	0.003426	0.976	0.41481	1	0.10872	1	0.030392	1	0.0025209	0.721	0.0091712	1	0.00046315	0.136	0.035652	1	0.24302	1
17p loss	0 (0%)	173	6.4856e-07	0.000201	0.0099896	1	0.017478	1	0.028227	1	0.0187	1	0.0015498	0.449	0.038289	1	0.042969	1	0.024172	1	0.32187	1
18p loss	0 (0%)	178	0.0019708	0.568	0.17725	1	0.026278	1	0.027873	1	0.46956	1	0.11658	1	0.16575	1	0.12938	1	0.027362	1	0.063788	1
18q loss	0 (0%)	171	7.9786e-05	0.0242	0.23268	1	0.0059013	1	0.0078628	1	0.11304	1	0.034114	1	0.38266	1	0.030435	1	0.13293	1	0.3336	1
20p loss	0 (0%)	192	0.55339	1	0.036185	1	0.53665	1	0.73624	1	0.131	1	0.30407	1	0.26276	1	0.028255	1	0.45943	1	0.26757	1
21q loss	0 (0%)	192	0.059844	1	0.27336	1	0.48396	1	0.777	1	0.131	1	0.1473	1	0.75328	1	0.18688	1	0.7692	1	0.8353	1
22q loss	0 (0%)	192	0.01861	1	0.27336	1	0.83738	1	0.68396	1	0.37605	1	0.11846	1	0.78675	1	1	1	0.4911	1	1	1
Xq loss	0 (0%)	194	0.12303	1	0.023317	1	NA	NA	NA	NA	0.10853	1	0.185	1	0.3494	1	0.58475	1	0.31072	1	0.25963	1