index	chromosome	region_start	region_end	peak_start	peak_end	enlarged_peak_start	enlarged_peak_end	n_genes_in_region	genes_in_region	n_genes_in_peak	genes_in_peak	n_genes_on_chip	genes_on_chip	top 3
1	1	149881398	177478268	161041735	161066590	161004307	161098482	8	NIT1,PFDN2,USF1,DEDD,PVRL4,KLHDC9,ARHGAP30,TSTD1,	4	PFDN2,PVRL4,KLHDC9,ARHGAP30,	
2	1	38637698	43755005	40377907	40377907	39531714	40539076	17	BMP8B,MYCL1,PPT1,PABPC4,PPIE,CAP1,MACF1,HEYL,HPCAL4,TRIT1,OXCT2,NT5C1A,MFSD2A,BMP8A,KIAA0754,SNORA55,PPIEL,	0	[MYCL1]	
3	1	149881398	177478268	151993500	151993500	120527361	153377503	201	hsa-mir-554,hsa-mir-4257,hsa-mir-3118-3,hsa-mir-3118-2,hsa-mir-3118-1,ARNT,BCL9,CTSK,CTSS,ECM1,ENSA,FCGR1A,FCGR1B,FLG,FMO5,GJA5,GJA8,IVL,LOR,MCL1,SMCP,NOTCH2,PDZK1,PI4KB,PRKAB2,PSMB4,PSMD4,RFX5,RORC,S100A8,S100A9,S100A10,S100A11,S100A12,SPRR1A,SPRR1B,SPRR2A,SPRR2B,SPRR2C,SPRR2D,SPRR2E,SPRR2F,SPRR2G,SPRR3,VPS72,TCHH,TUFT1,HIST2H2AA3,HIST2H2AC,HIST2H2BE,HIST2H4A,PIP5K1A,ANXA9,ITGA10,PEX11B,SELENBP1,PRPF3,SEC22B,CHD1L,PDE4DIP,SETDB1,SV2A,RBM8A,SF3B4,PIAS3,SEMA6C,POLR3C,TXNIP,MTMR11,MLLT11,TDRKH,CD160,CELF3,VPS45,POGZ,RPRD2,CA14,NBPF14,LCE2B,RNF115,TMOD4,CERS2,CRNN,BOLA1,APH1A,PLEKHO1,ACP6,GPR89B,OAZ3,MRPS21,ADAMTSL4,CRCT1,C1orf56,GOLPH3L,FAM63A,CDC42SE1,OTUD7B,PGLYRP4,FAM91A2,CGN,ZNF687,PRUNE,MRPL9,SCNM1,TNFAIP8L2,C1orf54,TARS2,SNX27,ANP32E,HORMAD1,POLR3GL,LCE3D,PGLYRP3,GNRHR2,THEM4,GABPB2,TCHHL1,RPTN,HIST2H3C,LIX1L,C1orf51,HFE2,ANKRD35,LELP1,BNIPL,SPRR4,PPIAL4A,PDIA3P,LCE4A,NBPF11,NUDT17,LCE5A,RIIAD1,THEM5,NBPF15,ANKRD34A,HIST2H2AB,HIST2H3A,HIST2H2BC,HIST2H2BA,LINGO4,LCE1A,LCE1B,LCE1C,LCE1D,LCE1E,LCE1F,LCE2A,LCE2C,LCE2D,LCE3A,LCE3B,LCE3C,LCE3E,LOC375010,NOTCH2NL,FLJ39739,LOC388692,LYSMD1,HRNR,FLG2,NBPF9,HIST2H2BF,KPRP,LCE6A,HIST2H4B,PRR9,PPIAL4G,PPIAL4D,LOC645166,EMBP1,SRGAP2P2,PPIAL4B,LOC653513,GPR89A,PPIAL4C,HIST2H3D,FAM72B,MIR554,HIST2H2AA4,FAM72D,LOC728855,LOC728875,NBPF24,GPR89C,NBPF16,PDZK1P1,PPIAL4F,LOC728989,PPIAL4E,PFN1P2,C1orf68,LOC100130000,LOC100132111,NBPF10,FCGR1C,C2CD4D,LOC100286793,LOC100289211,MIR4257,TNFAIP8L2-SCNM1,	0	[S100A11]	
4	3	2212571	22388374	12484849	12485147	12483451	12485886	0	[PPARG]	0	[PPARG]	
5	3	174669766	188422622	178747899	178800509	160810203	197538677	238	hsa-mir-922,hsa-mir-570,hsa-mir-3137,hsa-mir-944,hsa-mir-28,hsa-mir-1248,hsa-mir-1224,hsa-mir-569,hsa-mir-551b,hsa-mir-720,hsa-mir-1263,ACTL6A,AHSG,APOD,BCHE,BCL6,BDH1,AP2M1,CLCN2,CPN2,CRYGS,DGKG,DLG1,DVL3,ECT2,EHHADH,EIF4A2,EIF4G1,EPHB3,ETV5,MECOM,FGF12,GHSR,GP5,HRG,HES1,IL1RAP,KNG1,LPP,MFI2,MUC4,NDUFB5,OPA1,CLDN11,PAK2,PCYT1A,SERPINI1,SERPINI2,PIK3CA,PLD1,POLR2H,PPP1R2,PRKCI,MASP1,PSMD2,RFC4,SNORA63,RPL35A,TRA2B,SI,ST6GAL1,SKIL,SLC2A2,SOX2,SST,TERC,TFRC,THPO,SEC62,FXR1,TP63,CHRD,B3GALNT1,TNFSF10,EIF2B5,USP13,CLDN1,MAP3K13,ADIPOQ,KIAA0226,ECE2,ABCC5,TNK2,ALG3,KCNMB2,IGF2BP2,CLDN16,PDCD10,SLITRK3,NLGN1,NCBP2,TNIK,MCF2L2,ATP11B,VPS8,ACAP2,UBXN7,GPR160,FETUB,LAMP3,KCNMB3,GOLIM4,NMD3,ZNF639,PEX5L,DNAJB11,DCUN1D1,KLHL24,PIGX,TBCCD1,LEPREL1,ABCF3,LSG1,PARL,MFN1,YEATS2,MYNN,EIF5A2,MCCC1,HRASLS,MRPL47,NCEH1,SLC7A14,SENP2,GNB4,RTP4,MAGEF1,ZMAT3,FNDC3B,ATP13A3,TBL1XR1,ZBBX,LRRC31,MAP6D1,PHC3,PIGZ,SPATA16,B3GNT5,IQCG,ATP13A4,FYTTD1,ARPM1,MGC2889,LRCH3,CEP19,LMLN,KLHL6,VWA5B2,TMEM41A,TMEM44,EGFEM1P,CAMK2N2,TM4SF19,RPL39L,DNAJC19,OTOL1,FAM131A,ZDHHC19,LRRC15,FAM43A,TMEM207,RTP1,TTC14,WDR49,LRRC34,MB21D2,XXYLT1,CCDC50,PYDC2,LOC152217,SPTSSB,RNF168,HTR3C,LIPH,HTR3D,RPL22L1,OSTalpha,FBXO45,MUC20,SENP5,LOC220729,LOC253573,NAALADL2,TCTEX1D2,C3orf43,SDHAP1,UTS2D,HTR3E,C3orf70,TPRG1,CCDC39,LOC339926,LPP-AS2,LRRIQ4,SAMD7,LOC344887,RTP2,OSTN,ATP13A5,SOX2-OT,WDR53,ANKRD18DP,LRRC33,TMEM212,FLJ46066,FLJ42393,FLJ34208,LOC401109,SNORD2,SNORA4,LOC646168,C3orf65,LOC647107,GMNC,LOC647323,SNORA81,SNORD66,MIR551B,MIR569,MIR570,SDHAP2,FAM157A,MIR922,MIR944,LOC100128023,LOC100128164,LOC100131551,LOC100131635,SNAR-I,MIR1224,MIR1248,LOC100505687,MFI2-AS1,LOC100507086,LOC100507391,TM4SF19-TCTEX1D2,MIR4797,MIR4789,	1	ZMAT3,	
6	4	1648452	2195738	1752567	1804276	1738732	1816690	3	FGFR3,LETM1,TACC3,	2	FGFR3,LETM1,	
7	4	71972757	74855795	73234042	73279209	72387348	74853903	16	AFM,AFP,ALB,GC,CXCL1,IL8,PF4,PF4V1,PPBP,CXCL6,SLC4A4,ADAMTS3,NPFFR2,ANKRD17,RASSF6,COX18,	1	ADAMTS3,	
8	5	914233	15332578	1287540	1287540	914233	2732331	34	hsa-mir-4277,NDUFS6,SDHA,SLC6A3,SLC9A3,TERT,TRIP13,PDCD6,SLC12A7,TPPP,EXOC3,PP7080,IRX4,CEP72,AHRR,MRPL36,BRD9,ZDHHC11,LPCAT1,CLPTM1L,NKD2,C5orf55,CCDC127,PLEKHG4B,SLC6A19,SLC6A18,LRRC14B,SDHAP3,LOC728613,MIR4277,LOC100506688,MIR4457,MIR4456,MIR4635,	6	TERT,SLC12A7,NKD2,SLC6A19,SLC6A18,MIR4635,	
9	6	4700684	26472114	21166588	21168368	21085468	21756036	3	SOX4,CDKAL1,LINC00340,	1	CDKAL1,	
10	6	106657195	107549331	107310106	107335307	107099411	107514697	6	hsa-mir-587,C6orf203,QRSL1,PDSS2,BEND3,LOC100422737,	0	[C6orf203]	
11	7	51767909	57923947	55090379	55090852	54753353	55428178	2	EGFR,SEC61G,	1	EGFR,	
12	7	13715838	22566600	17800816	17847235	16814353	20589660	16	hsa-mir-3146,hsa-mir-1302-6,AHR,ITGB8,TWIST1,HDAC9,AGR2,SNX13,TSPAN13,AGR3,PRPS1L1,TWISTNB,FERD3L,TMEM196,MACC1,MIR3146,	2	AHR,SNX13,	
13	8	87796116	145232496	101861829	101883378	101181328	102530730	11	SPAG1,YWHAZ,RNF19A,PABPC1,ZNF706,GRHL2,NACAP1,ANKRD46,SNX31,FLJ42969,MIR4471,	0	[YWHAZ]	
14	8	36031255	39995046	37547777	37547777	37389985	37645346	4	ERLIN2,PROSC,ZNF703,LOC728024,	0	[ZNF703]	
15	8	41173630	42153581	41885433	41927963	41413454	42133102	9	hsa-mir-486,ANK1,IKBKB,PLAT,KAT6A,AP3M2,AGPAT6,NKX6-3,MIR486,	1	KAT6A,	
16	8	87796116	145232496	128303988	128424792	127334046	129787426	15	hsa-mir-1208,hsa-mir-1207,hsa-mir-1205,hsa-mir-1204,MYC,POU5F1B,PVT1,FAM84B,LOC727677,MIR1205,MIR1206,MIR1207,MIR1204,MIR1208,PCAT1,	1	POU5F1B,	
17	9	5087087	5925878	5087087	5916465	789932	11065071	48	hsa-mir-101-2,hsa-mir-1302-9,DMRT1,FOXD4,MLANA,GLDC,INSL4,JAK2,PTPRD,RFX3,RLN1,RLN2,SLC1A1,SMARCA2,VLDLR,KIAA0020,RCL1,DMRT2,INSL6,KDM4C,KANK1,RANBP6,CD274,AK3,C9orf68,CDC37L1,C9orf46,CBWD1,KIAA1432,DMRT3,ERMP1,PDCD1LG2,DOCK8,GLIS3-AS1,TPD52L3,IL33,C9orf123,UHRF2,C9orf66,KIAA2026,KCNV2,GLIS3,FLJ35024,PPAPDC2,MIR101-2,FAM138C,WASH1,MIR4665,	11	MLANA,INSL4,JAK2,RLN1,RLN2,INSL6,CD274,C9orf46,KIAA1432,ERMP1,PDCD1LG2,	
18	10	415240	14869299	5611426	5624369	5413375	5843691	8	CALML3,GDI2,NET1,CALML5,FAM208B,ASB13,TUBAL3,UCN3,	0	[CALML3]	
19	11	66272237	81947713	69474526	69493271	69465157	69502929	2	CCND1,ORAOV1,	2	CCND1,ORAOV1,	
20	11	100657318	103464952	102301960	102356081	101887478	102673248	12	BIRC2,BIRC3,MMP1,MMP7,MMP8,MMP10,MMP20,YAP1,MMP27,C11orf70,TMEM123,LOC100288077,	1	TMEM123,	
21	12	65911456	73655363	69334371	69513675	69198112	69569846	2	CPM,MDM2,	1	CPM,	
22	13	73642877	74271805	73846692	73897522	73652776	74155591	0	[KLF5]	0	[KLF5]	
23	16	23239908	25858537	24709884	24791312	23877424	25068566	7	PRKCB,RBBP6,CACNG3,TNRC6A,ARHGAP17,SLC5A11,LOC554206,	1	TNRC6A,	
24	17	37362533	38378810	37899688	37899688	37822311	37904211	7	ERBB2,GRB7,PNMT,TCAP,MIEN1,PGAP3,MIR4728,	1	GRB7,	
25	17	25270517	29772472	27688854	27688854	27388957	27859516	6	CRYBA1,TIAF1,NUFIP2,TAOK1,MYO18A,MIR4523,	0	[MIR4523]	
26	19	28240494	33393385	30479310	30519017	30244480	30531050	2	CCNE1,URI1,	1	URI1,	
27	20	29843973	33250326	30171850	30270772	30072986	30330306	10	hsa-mir-3193,BCL2L1,ID1,TPX2,REM1,HM13,COX4I2,LINC00028,PSIMCT-1,MIR3193,	5	hsa-mir-3193,BCL2L1,ID1,COX4I2,MIR3193,	
28	22	25208356	26821186	25404325	25419611	25205951	26817737	12	ADRBK2,CRYBB2,CRYBB2P1,CRYBB3,SEZ6L,MYO18B,KIAA1671,IGLL3P,LRP5L,SGSM1,TMEM211,LOC100128531,	0	[KIAA1671]	
