		Clinical Features	MRNA_CNMF		MRNA_CHIERARCHICAL		CN_CNMF		METHLYATION_CNMF		RPPA_CNMF		RPPA_CHIERARCHICAL		MRNASEQ_CNMF		MRNASEQ_CHIERARCHICAL		MIRSEQ_CNMF		MIRSEQ_CHIERARCHICAL		MIRSEQ_MATURE_CNMF		MIRSEQ_MATURE_CHIERARCHICAL	
	nCNV (%)	nWild-Type	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Chi-square test_P	Chi-square test_Q	Chi-square test_P	Chi-square test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q	Fisher's exact test_P	Fisher's exact test_Q
1p	421 (42%)	586	8.2235e-06	0.00131	0.00012874	0.0158	5.0961e-22	2.26e-19	6.1931e-07	0.000121	4.0122e-05	0.00542	0.0021679	0.163	2.5654e-09	6.52e-07	6.9469e-10	1.85e-07	3.7212e-07	7.48e-05	1.0685e-06	0.000198	6.9882e-06	0.00115	0.00086831	0.0764
1q	706 (70%)	301	0.001674	0.131	0.1013	1	2.4835e-12	7.95e-10	2.0624e-06	0.000375	0.23872	1	0.09953	1	0.54814	1	0.31806	1	0.96393	1	0.047056	1	0.78455	1	0.72543	1
2p	283 (28%)	724	4.3393e-05	0.00581	2.0354e-06	0.000372	6.3727e-18	2.69e-15	5.6604e-08	1.27e-05	4.5193e-05	0.00597	1.302e-05	0.00198	5.5232e-12	1.71e-09	1.7599e-13	6.12e-11	5.312e-11	1.54e-08	2.6831e-10	7.32e-08	6.5177e-11	1.87e-08	6.2034e-06	0.00104
2q	262 (26%)	745	0.0013577	0.109	6.2819e-05	0.00804	3.3899e-16	1.34e-13	1.6482e-07	3.46e-05	3.4541e-06	0.000598	2.0804e-05	0.00308	9.8294e-09	2.33e-06	1.262e-09	3.31e-07	8.8644e-08	1.95e-05	1.5447e-07	3.29e-05	6.6466e-09	1.63e-06	9.4954e-05	0.012
3p	308 (31%)	699	1.4815e-07	3.17e-05	9.1912e-07	0.000172	1.0303e-26	4.67e-24	1.4389e-15	5.53e-13	0.00019787	0.0226	0.00028252	0.0297	6.4952e-16	2.54e-13	2.2128e-15	8.39e-13	7.5186e-17	3.05e-14	4.6804e-14	1.71e-11	7.8504e-13	2.57e-10	5.8321e-09	1.44e-06
3q	296 (29%)	711	1.1515e-08	2.68e-06	3.148e-09	7.93e-07	2.2698e-28	1.04e-25	4.125e-17	1.7e-14	0.00061751	0.0579	0.0096678	0.532	2.7977e-17	1.16e-14	3.8605e-18	1.65e-15	1.0599e-18	4.56e-16	3.261e-16	1.29e-13	1.5571e-14	5.76e-12	1.0655e-10	3.02e-08
4p	403 (40%)	604	3.3739e-11	9.99e-09	5.1843e-12	1.61e-09	5.5022e-39	2.62e-36	6.4823e-18	2.72e-15	3.7725e-06	0.000649	4.4745e-05	0.00595	1.8879e-27	8.61e-25	4.084e-26	1.85e-23	1.459e-21	6.46e-19	1.6103e-25	7.26e-23	3.021e-19	1.31e-16	7.2026e-16	2.79e-13
4q	362 (36%)	645	2.7909e-05	0.00394	4.7253e-07	9.36e-05	2.0509e-29	9.48e-27	3.1758e-11	9.43e-09	0.0049884	0.319	0.037996	1	1.016e-18	4.38e-16	3.2457e-17	1.34e-14	3.8345e-13	1.31e-10	2.2051e-15	8.38e-13	2.1246e-12	6.84e-10	2.6953e-09	6.82e-07
5p	423 (42%)	584	4.035e-07	8.07e-05	2.192e-06	0.000395	2.5421e-32	1.19e-29	1.5462e-13	5.41e-11	0.0029614	0.207	0.0051112	0.322	5.6192e-15	2.11e-12	5.1988e-16	2.04e-13	2.2246e-13	7.7e-11	5.0287e-18	2.13e-15	4.879e-14	1.78e-11	1.7211e-11	5.23e-09
5q	411 (41%)	596	3.2931e-10	8.96e-08	7.1412e-09	1.74e-06	5.3478e-39	2.55e-36	2.5275e-20	1.1e-17	0.00093392	0.0785	0.00037251	0.0384	1.9224e-21	8.5e-19	4.7394e-23	2.12e-20	3.5616e-22	1.58e-19	3.2905e-25	1.48e-22	1.9459e-16	7.78e-14	2.1204e-16	8.46e-14
6p	370 (37%)	637	0.17871	1	0.017623	0.864	8.5765e-28	3.92e-25	9.1611e-15	3.42e-12	0.013676	0.711	0.23641	1	1.3785e-09	3.58e-07	6.3216e-13	2.11e-10	1.4728e-10	4.12e-08	8.7254e-10	2.3e-07	1.5297e-09	3.93e-07	1.1088e-05	0.00171
6q	396 (39%)	611	0.54958	1	0.35201	1	7.1249e-19	3.09e-16	1.6017e-07	3.4e-05	0.036354	1	0.75882	1	0.0065511	0.389	0.00043133	0.043	0.00011823	0.0148	0.0004876	0.0478	0.0001829	0.0212	0.015609	0.796
7p	395 (39%)	612	0.00091589	0.0785	0.0023942	0.174	4.4425e-18	1.89e-15	2.0366e-08	4.68e-06	0.077035	1	0.027772	1	7.5247e-09	1.82e-06	4.5035e-11	1.32e-08	3.4607e-07	6.99e-05	1.8187e-06	0.000335	0.00016454	0.0193	0.0021395	0.163
7q	360 (36%)	647	0.028803	1	0.016863	0.843	8.6683e-14	3.11e-11	7.1544e-06	0.00117	0.037877	1	0.059656	1	6.875e-06	0.00113	5.8724e-10	1.58e-07	2.6239e-05	0.00378	4.888e-06	0.000836	0.0023826	0.174	0.0032256	0.219
8p	641 (64%)	366	3.2985e-07	6.73e-05	3.7223e-05	0.0051	2.7011e-30	1.25e-27	7.5314e-16	2.91e-13	0.25468	1	0.13623	1	2.3814e-12	7.64e-10	3.4879e-13	1.2e-10	2.7739e-11	8.29e-09	6.3999e-13	2.13e-10	4.885e-12	1.52e-09	1.0561e-06	0.000196
8q	581 (58%)	426	8.1049e-06	0.0013	0.00019498	0.0224	6.7922e-32	3.17e-29	6.3987e-18	2.69e-15	0.1013	1	0.10874	1	1.1603e-10	3.26e-08	4.4591e-12	1.4e-09	1.169e-13	4.14e-11	2.7063e-12	8.61e-10	3.85e-13	1.31e-10	3.4138e-08	7.82e-06
9p	427 (42%)	580	6.4351e-07	0.000124	1.2671e-07	2.74e-05	1.449e-39	6.93e-37	7.6557e-18	3.21e-15	1.6524e-07	3.46e-05	3.9802e-05	0.00541	1.4262e-14	5.29e-12	1.0755e-16	4.35e-14	1.8037e-16	7.25e-14	7.0946e-16	2.76e-13	2.6937e-13	9.27e-11	1.183e-08	2.74e-06
9q	381 (38%)	626	0.00014747	0.0175	2.3102e-06	0.000414	1.5156e-28	6.97e-26	1.1756e-14	4.37e-12	3.1414e-05	0.0044	6.5035e-06	0.00108	2.8307e-16	1.12e-13	1.1644e-15	4.48e-13	6.8004e-15	2.55e-12	2.0293e-15	7.73e-13	2.8994e-11	8.64e-09	9.9435e-09	2.35e-06
10p	359 (36%)	648	3.7941e-09	9.52e-07	1.6082e-07	3.4e-05	1.2888e-33	6.04e-31	1.9102e-20	8.37e-18	1.8623e-05	0.00277	0.00013151	0.016	3.1558e-21	1.39e-18	1.25e-18	5.36e-16	7.3984e-15	2.77e-12	6.8286e-21	3e-18	1.8213e-12	5.88e-10	8.9408e-11	2.54e-08
10q	327 (32%)	680	1.1186e-05	0.00171	7.4625e-06	0.00121	2.1641e-25	9.74e-23	6.1152e-16	2.4e-13	4.8872e-06	0.000836	0.00022755	0.0252	1.6523e-14	6.1e-12	6.9748e-14	2.52e-11	8.0947e-10	2.15e-07	6.9174e-13	2.29e-10	1.4163e-09	3.67e-07	7.5686e-06	0.00122
11p	388 (39%)	619	0.0039434	0.26	0.082753	1	9.8619e-36	4.66e-33	4.7753e-13	1.61e-10	0.019167	0.92	0.075354	1	1.5148e-11	4.62e-09	8.4176e-12	2.59e-09	8.2072e-11	2.35e-08	1.5412e-12	4.99e-10	6.1921e-11	1.79e-08	5.72e-09	1.42e-06
11q	440 (44%)	567	0.00037859	0.0386	0.17178	1	5.9693e-36	2.83e-33	2.1616e-10	5.99e-08	0.67467	1	0.82426	1	0.00025739	0.0275	0.00042916	0.043	0.0015764	0.125	6.1996e-07	0.000121	0.00076761	0.0683	0.00063985	0.0582
12p	360 (36%)	647	1.3595e-07	2.92e-05	3.8182e-08	8.71e-06	3.2017e-31	1.49e-28	4.6545e-18	1.98e-15	0.00095432	0.0792	2.7192e-05	0.00386	2.3083e-17	9.6e-15	7.2666e-17	2.95e-14	1.5622e-15	5.98e-13	6.1265e-17	2.51e-14	2.1889e-11	6.59e-09	3.2381e-07	6.64e-05
12q	303 (30%)	704	0.00029375	0.0305	3.3136e-05	0.00461	9.4784e-23	4.23e-20	8.0643e-16	3.11e-13	0.0084016	0.47	0.0023925	0.174	6.4478e-11	1.86e-08	4.438e-11	1.3e-08	2.3684e-09	6.04e-07	1.106e-08	2.6e-06	6.6942e-08	1.49e-05	0.00042567	0.043
13q	497 (49%)	510	8.4815e-07	0.000161	5.1979e-08	1.18e-05	2.4815e-35	1.17e-32	2.6693e-14	9.8e-12	0.093603	1	0.027082	1	3.2278e-15	1.22e-12	1.6734e-16	6.74e-14	1.6775e-13	5.85e-11	7.4539e-14	2.68e-11	2.0026e-10	5.59e-08	2.1402e-06	0.000387
14q	379 (38%)	628	6.9513e-08	1.54e-05	9.0672e-07	0.00017	9.3336e-32	4.34e-29	3.2384e-17	1.34e-14	2.841e-06	5e-04	0.00074904	0.0674	8.2035e-19	3.54e-16	2.473e-20	1.08e-17	2.7487e-16	1.09e-13	2.5471e-17	1.06e-14	1.418e-12	4.61e-10	3.6857e-13	1.26e-10
15q	387 (38%)	620	8.6289e-09	2.07e-06	5.9238e-07	0.000116	8.5737e-37	4.07e-34	2.2368e-17	9.33e-15	0.00051419	0.0499	0.00012691	0.0157	5.1877e-21	2.28e-18	1.4964e-19	6.51e-17	1.7848e-15	6.82e-13	5.7894e-18	2.45e-15	3.7753e-11	1.11e-08	7.0663e-10	1.88e-07
16p	603 (60%)	404	0.0054576	0.333	0.0030982	0.214	6.6365e-08	1.49e-05	4.9004e-05	0.00642	0.010531	0.569	0.036985	1	0.00091279	0.0785	0.00054164	0.052	0.18152	1	0.49002	1	0.31322	1	0.14056	1
16q	687 (68%)	320	1.964e-07	4.07e-05	8.926e-08	1.95e-05	3.3331e-07	6.77e-05	5.0631e-11	1.47e-08	0.00089687	0.078	6.4737e-06	0.00108	7.2672e-12	2.25e-09	1.363e-12	4.44e-10	1.9837e-07	4.09e-05	4.1779e-11	1.23e-08	0.00013469	0.0163	5.3183e-05	0.00686
17p	644 (64%)	363	4.9091e-13	1.65e-10	0.050054	1	4.0231e-34	1.89e-31	2.5091e-12	8e-10	7.4159e-07	0.000142	0.0023108	0.171	1.0677e-07	2.32e-05	2.5859e-05	0.00375	6.0033e-09	1.48e-06	5.6095e-08	1.27e-05	1.7701e-07	3.68e-05	0.0032695	0.219
17q	462 (46%)	545	6.3075e-10	1.69e-07	1.6779e-05	0.00252	3.6226e-29	1.67e-26	2.9939e-12	9.46e-10	7.2707e-07	0.00014	0.00023705	0.0256	1.3435e-09	3.51e-07	4.906e-09	1.22e-06	1.1459e-08	2.68e-06	1.5174e-13	5.33e-11	9.377e-08	2.04e-05	0.00021896	0.0245
18p	463 (46%)	544	5.8219e-07	0.000115	2.6702e-06	0.000473	1.8508e-33	8.66e-31	1.9894e-13	6.9e-11	0.00014844	0.0175	0.00020418	0.0231	5.2669e-17	2.16e-14	1.9306e-16	7.74e-14	3.3137e-14	1.21e-11	1.4807e-13	5.21e-11	2.6132e-13	9.02e-11	7.1044e-09	1.73e-06
18q	443 (44%)	564	9.4672e-05	0.012	0.00013733	0.0165	1.4363e-34	6.77e-32	4.2003e-13	1.42e-10	0.00061593	0.0579	0.0078286	0.446	8.8555e-14	3.17e-11	1.935e-11	5.84e-09	2.4846e-11	7.45e-09	2.4442e-10	6.75e-08	1.1409e-11	3.5e-09	8.2154e-06	0.00131
19p	350 (35%)	657	8.9076e-06	0.00139	2.33e-06	0.000415	1.9289e-28	8.85e-26	7.209e-13	2.38e-10	1.527e-05	0.00231	5.0245e-05	0.00653	6.7054e-13	2.23e-10	6.9584e-14	2.52e-11	2.4796e-16	9.87e-14	1.158e-13	4.11e-11	9.295e-14	3.31e-11	3.2629e-06	0.000568
19q	354 (35%)	653	2.4919e-05	0.00364	1.0649e-05	0.00165	2.1147e-27	9.62e-25	1.0917e-10	3.08e-08	0.00063117	0.0581	0.0072731	0.422	8.5994e-11	2.45e-08	5.5233e-14	2e-11	5.2743e-13	1.77e-10	3.3071e-12	1.04e-09	4.0023e-10	1.08e-07	2.6796e-05	0.00383
20p	477 (47%)	530	3.9567e-09	9.89e-07	8.6293e-06	0.00135	6.9386e-48	3.33e-45	6.6275e-17	2.7e-14	0.00023389	0.0255	0.010706	0.569	6.7633e-16	2.64e-13	1.6539e-14	6.1e-12	1.4448e-13	5.1e-11	5.1822e-13	1.74e-10	1.4467e-08	3.34e-06	8.8057e-09	2.1e-06
20q	473 (47%)	534	5.2768e-06	0.000892	0.0012863	0.104	1.0335e-45	4.95e-43	1.3064e-18	5.59e-16	0.0064786	0.389	0.096077	1	2.9589e-12	9.38e-10	1.8911e-11	5.73e-09	4.2444e-10	1.15e-07	2.5833e-10	7.08e-08	6.9334e-08	1.54e-05	4.2091e-07	8.38e-05
21q	350 (35%)	657	1.4669e-09	3.78e-07	2.3113e-05	0.0034	5.5997e-27	2.54e-24	2.0635e-10	5.74e-08	0.00027456	0.0291	0.0018923	0.146	2.2841e-15	8.63e-13	7.2461e-17	2.95e-14	7.9653e-13	2.6e-10	3.7821e-12	1.19e-09	2.4623e-10	6.77e-08	7.6326e-09	1.84e-06
22q	545 (54%)	462	0.060285	1	0.16285	1	1.1024e-17	4.61e-15	1.1167e-09	2.94e-07	0.49381	1	0.21201	1	0.00022716	0.0252	0.0041044	0.267	0.0012712	0.104	0.036942	1	0.038374	1	0.17257	1
xq	299 (30%)	708	3.3783e-05	0.00466	8.9326e-07	0.000169	4.8424e-23	2.16e-20	2.2575e-09	5.78e-07	0.034258	1	0.00059821	0.0568	1.4946e-11	4.57e-09	7.6043e-13	2.5e-10	9.0509e-14	3.23e-11	8.9489e-09	2.13e-06	3.1931e-06	0.000559	0.0053289	0.33
