
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/6185324/GBM-TP.mergedcluster.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/GBM-TP/6154471/GBM-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=.05", "-cQ=0.25", "-MF=ALL", "-oT=GBM-TP", "-nV=Nozzle.R1", "-OP=AGGREGRATED_CLUSTER", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=GBM-TP"
[1] "opt"                     "-OP=AGGREGRATED_CLUSTER"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"                 "AGGREGRATED_CLUSTER"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/GBM-TP/6154471/GBM-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/GBM-TP/6185324/GBM-TP.mergedcluster.txt"

nPatients in clinical file=576, in cluster file=592, common to both=575
[1]  10 575
[1] "MRNA_CNMF"
[1] 3
  1   2   3   4 
154  97 156 118 
  1   2   3   4 
154  97 156 118 
[1] "MRNA_CHIERARCHICAL"
[1] 3
  1   2   3 
119 177 229 
  1   2   3 
119 177 229 
[1] "MIR_CNMF"
[1] 3
  1   2   3   4 
165 182  90 123 
  1   2   3   4 
165 182  90 123 
[1] "MIR_CHIERARCHICAL"
[1] 3
  1   2   3 
178 188 194 
  1   2   3 
178 188 194 
[1] "CN_CNMF"
[1] 3
  1   2   3 
149 219 185 
  1   2   3 
149 219 185 
[1] "METHLYATION_CNMF"
[1] 3
 1  2  3 
32 44 32 
 1  2  3 
32 44 32 
[1] "RPPA_CNMF"
[1] 3
 1  2  3  4 
57 60 44 49 
 1  2  3  4 
57 60 44 49 
[1] "RPPA_CHIERARCHICAL"
[1] 3
  1   2   3 
 64  35 111 
  1   2   3 
 64  35 111 
[1] "MRNASEQ_CNMF"
[1] 3
 1  2  3 
47 70 35 
 1  2  3 
47 70 35 
[1] "MRNASEQ_CHIERARCHICAL"
[1] 3
 1  2  3 
69 22 61 
 1  2  3 
69 22 61 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "DCCUPLOADDATE"                         
 [7] "GENDER"                                
 [8] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
 [9] "KARNOFSKYPERFORMANCESCORE"             
[10] "HISTOLOGICALTYPE"                      
[11] "RADIATIONS.RADIATION.REGIMENINDICATION"
[12] "BATCHNUMBER"                           

Input Data has 12 rows and 575 columns.

[1] "Batch" "12"   
[1] "Last Follow UP"
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0006 TCGA-02-0007 TCGA-02-0009 
         278          144          345          558          705          322 
TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0016 TCGA-02-0021 
        1077          630         2511          627         1699         2361 
TCGA-02-0023 TCGA-02-0024 TCGA-02-0025 TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 
         612         1614         1300          748          315         2755 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
          86          430          109          326          320          556 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0048 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 
         208          447           97          458          383          199 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 
          76          604          254          291          183          600 
TCGA-02-0068 TCGA-02-0069 TCGA-02-0070 TCGA-02-0071 TCGA-02-0074 TCGA-02-0075 
         804          873          762          167          310          634 
TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 TCGA-02-0084 TCGA-02-0085 TCGA-02-0086 
         828         2729          691            7         1560          268 
TCGA-02-0087 TCGA-02-0089 TCGA-02-0099 TCGA-02-0102 TCGA-02-0104 TCGA-02-0106 
        1757          515          106          821         1977          355 
TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0114 TCGA-02-0115 TCGA-02-0116 
         537          704         2817         3040          476         1489 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0266 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 
         503          514          538          327          440          121 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0321 TCGA-02-0324 
         422          432          485          372          300          234 
TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 
         323            5          484          782          133          764 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0422 TCGA-02-0430 TCGA-02-0432 TCGA-02-0439 
         322          377          441          321         1433           20 
TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-0456 TCGA-02-2466 TCGA-02-2470 
         345          281          492          102          511          393 
TCGA-02-2483 TCGA-02-2485 TCGA-02-2486 TCGA-06-0119 TCGA-06-0122 TCGA-06-0124 
         465          469          492           NA            8          123 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0128 TCGA-06-0129 TCGA-06-0130 
        1439            3          108          691          988          320 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0137 TCGA-06-0138 TCGA-06-0139 TCGA-06-0140 
         570          428          701          674          327           NA 
TCGA-06-0141 TCGA-06-0142 TCGA-06-0143 TCGA-06-0145 TCGA-06-0146 TCGA-06-0147 
         280           NA          357           71          611          508 
TCGA-06-0148 TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 
         298          238           NA           NA          359          389 
TCGA-06-0155 TCGA-06-0156 TCGA-06-0157 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 
         263          164           97          166           NA           NA 
TCGA-06-0162 TCGA-06-0164 TCGA-06-0165 TCGA-06-0166 TCGA-06-0167 TCGA-06-0168 
          78         1729           NA          161           NA          579 
TCGA-06-0169 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 TCGA-06-0175 TCGA-06-0176 
          95          396            7           67           83         2767 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0182 TCGA-06-0184 TCGA-06-0185 
          60         1642          578           77         1228         2246 
TCGA-06-0187 TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
         801          866          454          313          556          142 
TCGA-06-0195 TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0208 TCGA-06-0209 
         214           79           12          196          166          118 
TCGA-06-0210 TCGA-06-0211 TCGA-06-0213 TCGA-06-0214 TCGA-06-0216 TCGA-06-0219 
         151          360            6          378          684           10 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0241 TCGA-06-0394 
         548          314          359           NA          455          313 
TCGA-06-0397 TCGA-06-0402 TCGA-06-0409 TCGA-06-0410 TCGA-06-0412 TCGA-06-0413 
         168            8         2145          142          245            5 
TCGA-06-0414 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0649 
        1065          375           98          136          293           62 
TCGA-06-0650 TCGA-06-0686 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 
         717          285          678          594          163           82 
TCGA-06-0749 TCGA-06-0750 TCGA-06-0875 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 
          65           28         1322         1405          204          218 
TCGA-06-0879 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
         699          178          165          637          226          193 
TCGA-06-1087 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 TCGA-06-1805 
         109          815          263          239          413         1031 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2562 TCGA-06-2563 
          33           23          149          282           86          932 
TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-2567 TCGA-06-2569 TCGA-06-2570 
         181          207          182          133           13          958 
TCGA-06-5408 TCGA-06-5410 TCGA-06-5411 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 
         341          107          254          138          268          273 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5417 TCGA-06-5418 TCGA-06-5856 TCGA-06-5858 
         260          204          155           83          114          186 
TCGA-06-5859 TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6693 
         138          119          236          163           44           15 
TCGA-06-6694 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 TCGA-06-6700 
         224          252          391          145           47          145 
TCGA-06-6701 TCGA-08-0244 TCGA-08-0245 TCGA-08-0246 TCGA-08-0344 TCGA-08-0345 
         151          690         1057          119         3310           53 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 TCGA-08-0351 
         132          419          316          231          103         1636 
TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 
          39          195          458          685          447         1084 
TCGA-08-0358 TCGA-08-0359 TCGA-08-0360 TCGA-08-0373 TCGA-08-0375 TCGA-08-0380 
         593           29          352          134          279          330 
TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
          31          478           97          322            9           17 
TCGA-08-0510 TCGA-08-0511 TCGA-08-0512 TCGA-08-0514 TCGA-08-0516 TCGA-08-0517 
         106          235          358          259          561         1770 
TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 TCGA-08-0522 TCGA-08-0524 TCGA-08-0525 
          39          326          146          555          198          486 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0615 TCGA-12-0616 TCGA-12-0618 TCGA-12-0619 
         526          168          426          438           49          316 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0657 TCGA-12-0662 TCGA-12-0670 
         181          218         2004            3         1161          790 
TCGA-12-0688 TCGA-12-0691 TCGA-12-0692 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
         734          185           80          550           NA          378 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0780 
        1615         1311          167          277          451          434 
TCGA-12-0818 TCGA-12-0819 TCGA-12-0820 TCGA-12-0821 TCGA-12-0822 TCGA-12-0826 
        2790          753          562          323          715          845 
TCGA-12-0827 TCGA-12-0828 TCGA-12-0829 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 
        1179          271          626         3880          177          189 
TCGA-12-1091 TCGA-12-1092 TCGA-12-1093 TCGA-12-1094 TCGA-12-1095 TCGA-12-1096 
         929          658          364          346          482          277 
TCGA-12-1097 TCGA-12-1098 TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-1599 
         442          121          103          427          287          769 
TCGA-12-1600 TCGA-12-1602 TCGA-12-3644 TCGA-12-3646 TCGA-12-3648 TCGA-12-3649 
         414          194         1807         1314          784          351 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 
         333          358         1050          357          398           98 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0740 TCGA-14-0781 TCGA-14-0783 TCGA-14-0786 
          61          459          364           29          188          701 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0812 TCGA-14-0813 TCGA-14-0817 
          68          342          418           99           41          164 
TCGA-14-0862 TCGA-14-0865 TCGA-14-0866 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 
          88          502          801           62          879          485 
TCGA-14-1037 TCGA-14-1043 TCGA-14-1395 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 
         587           24           42           34          114          974 
TCGA-14-1450 TCGA-14-1451 TCGA-14-1452 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
        1788          703          216           35          917           28 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1459 TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 
        1245          186          378           30           59          540 
TCGA-14-1823 TCGA-14-1825 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 
         542          232          179          217          532          242 
TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 TCGA-15-0742 TCGA-15-1444 TCGA-15-1446 
          12          114          103          300           NA          581 
TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 TCGA-16-0850 
        1618          167          119          302          793          496 
TCGA-16-0861 TCGA-16-1045 TCGA-16-1047 TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 
         130          882           25          301          406          111 
TCGA-16-1062 TCGA-16-1063 TCGA-16-1460 TCGA-19-0955 TCGA-19-0957 TCGA-19-0960 
         556          425          195          358          665          262 
TCGA-19-0962 TCGA-19-0963 TCGA-19-0964 TCGA-19-1385 TCGA-19-1386 TCGA-19-1387 
          13          434          103          327          276          181 
TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 TCGA-19-1787 
         394          141          772          106          217          385 
TCGA-19-1788 TCGA-19-1789 TCGA-19-1790 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
         111           99          153            4          294          148 
TCGA-19-2621 TCGA-19-2623 TCGA-19-2624 TCGA-19-2625 TCGA-19-2629 TCGA-19-2631 
          33          229            5          124          501          213 
TCGA-19-4065 TCGA-19-4068 TCGA-19-5947 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
         214          136          202          343          244          567 
TCGA-19-5953 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 TCGA-19-5959 
         144          242           54          198          164          161 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-1442 TCGA-26-1443 
         165          305          422          296          953          216 
TCGA-26-1799 TCGA-26-5132 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 
         285          286          452          167          269           37 
TCGA-26-5139 TCGA-26-6173 TCGA-26-6174 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
          48          241           70          146          504           NA 
TCGA-27-1833 TCGA-27-1834 TCGA-27-1835 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
         555         1008          648          914          427          350 
TCGA-27-2518 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 
         752          316          316          489          231           87 
TCGA-27-2527 TCGA-27-2528 TCGA-28-1745 TCGA-28-1746 TCGA-28-1747 TCGA-28-1749 
         438          479          344            6           77          279 
TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1756 
         253          231          257           36           46           86 
TCGA-28-1757 TCGA-28-1760 TCGA-28-2499 TCGA-28-2502 TCGA-28-2506 TCGA-28-2509 
           4          143           94           20          205          145 
TCGA-28-2513 TCGA-28-2514 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 
         222          160          119          275          473          442 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 TCGA-28-5216 TCGA-28-5218 
         358          298          432          237          415          128 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 
         259          319          165          467          641           15 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1980 TCGA-32-1982 TCGA-32-1986 
           3          482          593           36          142          386 
TCGA-32-1987 TCGA-32-1991 TCGA-32-2491 TCGA-32-2494 TCGA-32-2495 TCGA-32-2615 
         451          515          372          632          456          485 
TCGA-32-2616 TCGA-32-2632 TCGA-32-2634 TCGA-32-2638 TCGA-32-4208 TCGA-32-4209 
         223          269          693          644          643          603 
TCGA-32-4210 TCGA-32-4211 TCGA-32-4213 TCGA-32-4719 TCGA-32-5222 TCGA-41-2571 
         112          383          603          330          323           26 
TCGA-41-2572 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 
         406          272          290           30          135           NA 
TCGA-41-4097 TCGA-41-5651 TCGA-41-6646 TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 
           6          351          235          105          635          131 
TCGA-74-6578 TCGA-74-6581 TCGA-74-6584 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 
         436          250          227          145          138          535 
TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
          94          111          278         1458           77          328 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6193 TCGA-76-6280 TCGA-76-6282 TCGA-76-6285 
         507          100           82          346          519          253 
TCGA-76-6286 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 TCGA-76-6662 TCGA-76-6663 
         637          147          153            7          281          234 
TCGA-76-6664 TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 TCGA-OX-A56R 
         236           49          538            2           NA 
Variable 1:'AGE':	nDistinctValues=72,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=368,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=410,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 7:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=24,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 9:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 10:'HISTOLOGICAL.TYPE':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'BATCH.NUMBER':	nDistinctValues=22,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
[1] "AGE"                                   
[2] "GENDER"                                
[3] "KARNOFSKY.PERFORMANCE.SCORE"           
[4] "HISTOLOGICAL.TYPE"                     
[5] "RADIATIONS.RADIATION.REGIMENINDICATION"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 575 columns, 1 survival variables, and 5 non-survival variables.
AGE, nv=72, binary=FALSE, numeric=TRUE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=3, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE

Clustering(1) Variable = MRNA_CNMF
D1V1, survival
          sevent
clus2        0   1
  subtype1  18 136
  subtype2  21  76
  subtype3  33 123
  subtype4  20  98
subtype1 subtype2 subtype3 subtype4 
     154       97      156      118 
subtype1 subtype2 subtype3 subtype4 
     136       76      123       98 
$subtype1
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0009 TCGA-02-0025 TCGA-02-0027 
        9.14         4.73        11.34        10.59        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0039 TCGA-02-0043 TCGA-02-0046 
       90.58         2.83        14.14        10.52        18.28         6.84 
TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       15.06        12.59         6.54        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0064 TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0089 
        6.02        19.73        20.84        27.22         8.81        16.93 
TCGA-02-0099 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0337 TCGA-02-0456 
        3.48        11.67        17.65        23.15        25.12         3.35 
TCGA-02-2470 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0130 TCGA-06-0139 
       12.92        16.18         0.26         4.04        10.52        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0147 TCGA-06-0149 TCGA-06-0152 
        0.20         9.21        11.74        16.70         7.82        11.80 
TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 
        8.65         5.39        56.84        19.04         3.12         2.73 
TCGA-06-0176 TCGA-06-0184 TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 
       90.97        40.37        14.93        10.29        18.28         4.67 
TCGA-06-0197 TCGA-06-0201 TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0397 
        2.60         0.39         6.44         4.96         0.20         5.52 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 
       70.52         8.05        12.33         3.22         4.47         2.04 
TCGA-06-0650 TCGA-06-0750 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1800 
       23.57         0.92         5.85        20.94         7.43        26.79 
TCGA-06-1802 TCGA-06-2567 TCGA-06-5410 TCGA-06-5412 TCGA-06-5418 TCGA-08-0346 
        7.86         4.37         3.52         4.54         2.73         4.34 
TCGA-08-0352 TCGA-08-0360 TCGA-08-0373 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
        1.28        11.57         4.41        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0522 TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 
        3.48        11.77        18.25        10.39         5.95         7.17 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0778 TCGA-12-0822 
       53.10        43.10         5.49         9.11        14.83        23.51 
TCGA-12-0829 TCGA-12-1088 TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 
       20.58       127.56        21.63        11.97        15.85         9.11 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0789 TCGA-14-0817 TCGA-14-1037 
       15.09         0.95         6.18        11.24         5.39        19.30 
TCGA-14-1396 TCGA-14-1452 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 
        1.12         7.10        17.82         7.13        17.49        29.00 
TCGA-16-1055 TCGA-16-1060 TCGA-19-1385 TCGA-19-1389 TCGA-19-1790 TCGA-19-2623 
        9.90         3.65        10.75         4.64         5.03         7.53 
TCGA-19-5947 TCGA-19-5955 TCGA-26-1438 TCGA-26-5139 TCGA-27-1830 TCGA-27-1832 
        6.64         1.78        10.03         1.58         4.80         9.86 
TCGA-27-2524 TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 TCGA-28-1752 
        7.59        14.40        11.31         8.32         7.59         8.45 
TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5207 TCGA-28-5209 TCGA-28-5215 
        0.66         4.77         7.30         9.04        14.53         7.79 
TCGA-32-1977 TCGA-32-1982 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 
        0.10         4.67        12.69        14.83        12.23        20.78 
TCGA-32-2615 TCGA-32-2632 TCGA-32-4208 TCGA-32-4209 TCGA-32-4213 TCGA-41-3393 
       15.95         8.84        21.14        19.82        19.82         4.44 
TCGA-41-3915 TCGA-41-4097 TCGA-76-6193 TCGA-76-6282 
       11.84         0.20         2.70        17.06 

$subtype2
TCGA-02-0007 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0021 
       23.18        35.41        20.71        82.55        20.61        77.62 
TCGA-02-0024 TCGA-02-0026 TCGA-02-0038 TCGA-02-0047 TCGA-02-0048 TCGA-02-0069 
       53.06        24.59        10.72        14.70         3.19        28.70 
TCGA-02-0074 TCGA-02-0104 TCGA-02-0114 TCGA-02-0116 TCGA-02-0266 TCGA-02-0271 
       10.19        65.00        99.95        48.95        17.69        14.47 
TCGA-02-0281 TCGA-02-0321 TCGA-02-0338 TCGA-02-0339 TCGA-02-2466 TCGA-02-2483 
        3.98         9.86        10.59        12.39        16.80        15.29 
TCGA-06-0174 TCGA-06-0177 TCGA-06-0241 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 
        2.20         1.97        14.96         4.67         0.16        35.01 
TCGA-06-0686 TCGA-06-0745 TCGA-06-0875 TCGA-06-1086 TCGA-06-1087 TCGA-06-2559 
        9.37         5.36        43.46         6.35         3.58         4.90 
TCGA-06-2569 TCGA-06-5413 TCGA-06-5416 TCGA-06-5858 TCGA-08-0245 TCGA-08-0344 
        0.43         8.81         6.71         6.12        34.75       108.82 
TCGA-08-0353 TCGA-08-0517 TCGA-08-0524 TCGA-12-0616 TCGA-12-0692 TCGA-12-0820 
        6.41        58.19         6.51        14.40         2.63        18.48 
TCGA-12-0821 TCGA-12-1598 TCGA-12-3644 TCGA-12-3646 TCGA-12-3650 TCGA-12-5301 
       10.62         9.44        59.41        43.20        10.95         2.01 
TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 
       16.50         2.04        28.90         1.15        30.15         0.92 
TCGA-14-1794 TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-3477 TCGA-14-4157 
        0.99         1.94        17.75         7.63         3.75         3.39 
TCGA-15-1449 TCGA-16-0850 TCGA-19-1390 TCGA-19-1392 TCGA-19-1787 TCGA-19-2624 
        5.49        16.31        25.38         3.48        12.66         0.16 
TCGA-19-5956 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-27-2521 
        6.51        14.86         5.49         8.84         1.22        10.39 
TCGA-27-2523 TCGA-28-1753 TCGA-28-5204 TCGA-28-5208 TCGA-28-5213 TCGA-28-5214 
       16.08         1.18         3.91        15.55         9.80        14.20 
TCGA-28-5216 TCGA-28-5218 TCGA-32-1973 TCGA-32-2616 TCGA-32-2634 TCGA-32-5222 
       13.64         4.21        21.07         7.33        22.78        10.62 
TCGA-41-5651 TCGA-76-4929 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 
       11.54         3.65        47.93         2.53        10.78        16.67 
TCGA-76-6285 
        8.32 

$subtype3
TCGA-02-0016 TCGA-02-0023 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 TCGA-02-0083 
       55.86        20.12        26.43        25.05         5.49        22.72 
TCGA-02-0102 TCGA-02-0113 TCGA-02-0260 TCGA-02-0269 TCGA-02-0285 TCGA-02-0289 
       26.99        92.61        16.90        10.75        13.87        14.20 
TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 TCGA-02-0422 TCGA-02-0430 TCGA-02-2485 
       15.95        12.23         4.37        14.50        10.55        15.42 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 TCGA-06-0154 
       47.31         0.10        23.05         2.33         9.80        12.79 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0182 TCGA-06-0185 TCGA-06-0187 TCGA-06-0208 
        3.19         5.46         2.53        73.84        26.33         5.46 
TCGA-06-0211 TCGA-06-0216 TCGA-06-0394 TCGA-06-0402 TCGA-06-0743 TCGA-06-0744 
       11.84        22.49        10.29         0.26        22.29        19.53 
TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0879 TCGA-06-2562 
        2.70        46.19         5.65         7.17        22.98         2.83 
TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-5408 TCGA-06-5414 
       30.64         5.95         6.81         5.98        11.21         8.98 
TCGA-06-5415 TCGA-06-5856 TCGA-06-6390 TCGA-08-0244 TCGA-08-0246 TCGA-08-0354 
        8.55         3.75         5.36        22.68         3.91        15.06 
TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 
       22.52        14.70        35.64        19.50         9.17        15.72 
TCGA-08-0511 TCGA-08-0514 TCGA-08-0516 TCGA-08-0518 TCGA-08-0521 TCGA-08-0525 
        7.73         8.52        18.44         1.28         4.80        15.98 
TCGA-08-0529 TCGA-08-0531 TCGA-12-0656 TCGA-12-0657 TCGA-12-0688 TCGA-12-0703 
       17.29         5.52        65.88         0.10        24.13        18.08 
TCGA-12-0707 TCGA-12-0780 TCGA-12-0826 TCGA-12-0828 TCGA-12-1090 TCGA-12-1091 
       28.37        14.27        27.78         8.91         6.21        30.54 
TCGA-12-1094 TCGA-12-1098 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
       11.38         3.98        25.28        13.61        25.78        11.54 
TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0786 TCGA-14-0787 
       34.52        11.74        13.08         3.22        23.05         2.24 
TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1402 TCGA-14-1459 TCGA-14-2555 
       13.74        26.33        15.95        32.02        12.43         7.96 
TCGA-15-0742 TCGA-15-1446 TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 
        9.86        19.10         0.82        13.35        18.28        13.97 
TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 TCGA-19-1386 TCGA-19-1786 TCGA-19-1789 
       11.77         0.43         3.39         9.07         7.13         3.25 
TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2625 TCGA-19-2631 
        0.13         9.67         4.87         1.08         4.08         7.00 
TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5958 
        4.47        11.28         8.02        18.64         7.96         5.39 
TCGA-19-5959 TCGA-26-1439 TCGA-26-1440 TCGA-26-1443 TCGA-26-1799 TCGA-26-5132 
        5.29        13.87         9.73         7.10         9.37         9.40 
TCGA-27-1831 TCGA-27-1833 TCGA-27-1835 TCGA-27-1837 TCGA-27-1838 TCGA-27-2526 
       16.57        18.25        21.30        14.04        11.51         2.86 
TCGA-27-2528 TCGA-28-1749 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 TCGA-28-2514 
       15.75         9.17         1.51         0.13         4.70         5.26 
TCGA-28-5219 TCGA-28-5220 TCGA-28-6450 TCGA-32-1970 TCGA-32-1978 TCGA-32-1979 
        8.52        10.49         5.42        15.35        15.85        19.50 
TCGA-32-1991 TCGA-32-2495 TCGA-32-2638 TCGA-32-4719 TCGA-41-2572 TCGA-41-3392 
       16.93        14.99        21.17        10.85        13.35         0.99 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4931 TCGA-81-5910 TCGA-87-5896 
        4.54        17.59         3.09         9.14         1.61         0.07 

$subtype4
TCGA-02-0080 TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0115 TCGA-02-0258 
       89.72         0.23        51.29        57.76        15.65        16.54 
TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0332 TCGA-02-0432 
        7.69        10.62         0.16        15.91        25.71        47.11 
TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-06-0127 TCGA-06-0128 
        0.66        11.34         9.24        16.18         3.55        22.72 
TCGA-06-0129 TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0142 TCGA-06-0146 
       32.48        18.74        14.07        22.16         2.20        20.09 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0166 TCGA-06-0167 TCGA-06-0171 TCGA-06-0173 
       11.80         2.56         5.29        11.41        13.02         0.23 
TCGA-06-0178 TCGA-06-0179 TCGA-06-0188 TCGA-06-0195 TCGA-06-0214 TCGA-06-0219 
       53.98        19.00        28.47         7.04        12.43         0.33 
TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 TCGA-06-0648 TCGA-06-0749 
       18.02        10.32        11.80        20.42         9.63         2.14 
TCGA-06-0882 TCGA-06-1801 TCGA-06-1804 TCGA-06-1805 TCGA-06-2557 TCGA-06-2558 
        5.42         8.65        13.58        33.90         1.08         0.76 
TCGA-06-2561 TCGA-06-2570 TCGA-06-5411 TCGA-06-5417 TCGA-06-5859 TCGA-06-6389 
        9.27        31.50         8.35         5.10         4.54         7.76 
TCGA-06-6391 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
        1.45         1.74        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0359 TCGA-08-0380 TCGA-08-0385 TCGA-08-0389 TCGA-08-0520 
       53.79         0.95        10.85         1.02         3.19        10.72 
TCGA-12-0618 TCGA-12-0670 TCGA-12-0818 TCGA-12-0819 TCGA-12-0827 TCGA-12-1089 
        1.61        25.97        91.73        24.76        38.76         5.82 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1597 TCGA-12-1602 TCGA-12-3651 TCGA-14-0812 
       14.53         3.39        14.04         6.38        11.77         3.25 
TCGA-14-0813 TCGA-14-1401 TCGA-14-1451 TCGA-14-1456 TCGA-14-1458 TCGA-14-1827 
        1.35         3.75        23.11        40.93         6.12         5.88 
TCGA-14-3476 TCGA-15-1444 TCGA-15-1447 TCGA-16-0846 TCGA-16-0848 TCGA-16-0849 
        0.39        50.53        53.19         3.91         9.93        26.07 
TCGA-16-0861 TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 
        4.27         6.41        21.86         8.61        14.27         5.95 
TCGA-19-1388 TCGA-19-1788 TCGA-19-2629 TCGA-19-5960 TCGA-26-1442 TCGA-27-1834 
       12.95         3.65        16.47         5.42        31.33        33.14 
TCGA-27-1836 TCGA-27-2518 TCGA-27-2519 TCGA-28-1746 TCGA-28-1747 TCGA-28-1756 
       30.05        24.72        10.39         0.20         2.53         2.83 
TCGA-28-2506 TCGA-32-1976 TCGA-32-1980 TCGA-32-4210 TCGA-32-4211 TCGA-41-2571 
        6.74         0.49         1.18         3.68        12.59         0.85 
TCGA-41-2573 TCGA-41-2575 TCGA-76-4925 TCGA-76-6192 
        8.94         9.53         4.77         3.29 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.16     0.07     0.16 
subtype1 subtype2 subtype3 subtype4 
  127.56   108.82    92.61    91.73 
subtype1 subtype2 subtype3 subtype4 
   9.175   10.620   11.330    9.780 
[1] "0.1 - 127.6 (9.2)"  "0.2 - 108.8 (10.6)" "0.1 - 92.6 (11.3)" 
[4] "0.2 - 91.7 (9.8)"  
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype1" "subtype1" "subtype2" "subtype4"
[133] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[187] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[199] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[217] "subtype1" "subtype3" "subtype2" "subtype4" "subtype4" "subtype3"
[223] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[229] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[235] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype4"
[247] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype3"
[265] "subtype3" "subtype3" "subtype2" "subtype4" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
[295] "subtype4" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[307] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[325] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
[331] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[337] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype3"
[349] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[355] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype2"
[361] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[367] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[379] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[385] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype2"
[391] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[403] "subtype3" "subtype4" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[415] "subtype3" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
[421] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[433] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[439] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[445] "subtype3" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[457] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[463] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[469] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[481] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[487] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[493] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[499] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype4"
[505] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[511] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
[523] "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype1" "subtype1" "subtype2" "subtype4"
[133] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[187] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[199] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[217] "subtype1" "subtype3" "subtype2" "subtype4" "subtype4" "subtype3"
[223] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[229] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[235] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype4"
[247] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype3"
[265] "subtype3" "subtype3" "subtype2" "subtype4" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
[295] "subtype4" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[307] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[325] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
[331] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[337] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype3"
[349] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[355] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype2"
[361] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[367] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[379] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[385] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype2"
[391] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[403] "subtype3" "subtype4" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[415] "subtype3" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
[421] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[433] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[439] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[445] "subtype3" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[457] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[463] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[469] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[481] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[487] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[493] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[499] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype4"
[505] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[511] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
[523] "subtype2" "subtype3" "subtype3"
  [1] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype2"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
 [13] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
 [19] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
 [31] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype1" "subtype1" "subtype4" "subtype3"
 [43] "subtype4" "subtype4" "subtype1" "subtype4" "subtype1" "subtype1"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype2"
 [61] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
 [67] "subtype3" "subtype2" "subtype4" "subtype4" "subtype4" "subtype4"
 [73] "subtype4" "subtype3" "subtype1" "subtype2" "subtype2" "subtype3"
 [79] "subtype3" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
 [85] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype1"
 [91] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
 [97] "subtype4" "subtype1" "subtype4" "subtype4" "subtype3" "subtype4"
[103] "subtype1" "subtype1" "subtype1" "subtype4" "subtype1" "subtype3"
[109] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype3"
[115] "subtype1" "subtype1" "subtype3" "subtype3" "subtype4" "subtype4"
[121] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[127] "subtype4" "subtype2" "subtype1" "subtype1" "subtype2" "subtype4"
[133] "subtype4" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[139] "subtype1" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
[145] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[151] "subtype4" "subtype3" "subtype4" "subtype4" "subtype4" "subtype4"
[157] "subtype4" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
[163] "subtype2" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[169] "subtype1" "subtype4" "subtype1" "subtype1" "subtype2" "subtype3"
[175] "subtype3" "subtype2" "subtype3" "subtype4" "subtype1" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype4"
[187] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype4"
[193] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype2"
[199] "subtype4" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[205] "subtype1" "subtype2" "subtype4" "subtype3" "subtype1" "subtype4"
[211] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[217] "subtype1" "subtype3" "subtype2" "subtype4" "subtype4" "subtype3"
[223] "subtype4" "subtype3" "subtype2" "subtype3" "subtype2" "subtype4"
[229] "subtype1" "subtype4" "subtype4" "subtype4" "subtype4" "subtype4"
[235] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[241] "subtype3" "subtype4" "subtype1" "subtype1" "subtype3" "subtype4"
[247] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype1"
[253] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[259] "subtype3" "subtype4" "subtype3" "subtype1" "subtype2" "subtype3"
[265] "subtype3" "subtype3" "subtype2" "subtype4" "subtype1" "subtype1"
[271] "subtype1" "subtype3" "subtype3" "subtype4" "subtype3" "subtype2"
[277] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[283] "subtype1" "subtype3" "subtype4" "subtype4" "subtype2" "subtype2"
[289] "subtype1" "subtype3" "subtype4" "subtype3" "subtype1" "subtype1"
[295] "subtype4" "subtype3" "subtype3" "subtype1" "subtype1" "subtype3"
[301] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype4"
[307] "subtype2" "subtype3" "subtype3" "subtype4" "subtype2" "subtype2"
[313] "subtype3" "subtype3" "subtype2" "subtype4" "subtype3" "subtype3"
[319] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[325] "subtype3" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
[331] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[337] "subtype1" "subtype1" "subtype4" "subtype3" "subtype4" "subtype1"
[343] "subtype2" "subtype2" "subtype2" "subtype4" "subtype4" "subtype3"
[349] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype4"
[355] "subtype1" "subtype1" "subtype3" "subtype4" "subtype2" "subtype2"
[361] "subtype3" "subtype4" "subtype3" "subtype4" "subtype2" "subtype4"
[367] "subtype4" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[373] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype4"
[379] "subtype3" "subtype4" "subtype4" "subtype3" "subtype4" "subtype3"
[385] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype2"
[391] "subtype2" "subtype3" "subtype2" "subtype4" "subtype3" "subtype1"
[397] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[403] "subtype3" "subtype4" "subtype3" "subtype3" "subtype1" "subtype3"
[409] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype3"
[415] "subtype3" "subtype4" "subtype1" "subtype3" "subtype3" "subtype4"
[421] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype2" "subtype1" "subtype1" "subtype3" "subtype1" "subtype3"
[433] "subtype4" "subtype3" "subtype4" "subtype3" "subtype3" "subtype4"
[439] "subtype4" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[445] "subtype3" "subtype1" "subtype4" "subtype4" "subtype3" "subtype1"
[451] "subtype1" "subtype1" "subtype2" "subtype3" "subtype4" "subtype3"
[457] "subtype3" "subtype1" "subtype4" "subtype1" "subtype1" "subtype3"
[463] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[469] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[475] "subtype3" "subtype2" "subtype4" "subtype1" "subtype3" "subtype3"
[481] "subtype4" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
[487] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype2"
[493] "subtype3" "subtype1" "subtype1" "subtype4" "subtype4" "subtype1"
[499] "subtype3" "subtype2" "subtype4" "subtype3" "subtype4" "subtype4"
[505] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype4"
[511] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype4" "subtype1" "subtype1"
[523] "subtype2" "subtype3" "subtype3"
D1V2, continuous
D1V3, binary
          cls
clus        0  1
  subtype1 59 95
  subtype2 41 56
  subtype3 66 90
  subtype4 39 79
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   59   95
  subtype2   41   56
  subtype3   66   90
  subtype4   39   79
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       59       41       66       39
  MALE         95       56       90       79
D1V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             1                   8
  subtype2                             0                   7
  subtype3                             0                   4
  subtype4                             5                   1
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             145
  subtype2                              90
  subtype3                             152
  subtype4                             112
D1V5, multiclass
D1V6, binary
          cls
clus         0   1
  subtype1 106  48
  subtype2  68  29
  subtype3 116  40
  subtype4  70  48
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  106   48
  subtype2   68   29
  subtype3  116   40
  subtype4   70   48
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       106       68      116       70
  YES       48       29       40       48

Clustering(2) Variable = MRNA_CHIERARCHICAL
D2V1, survival
          sevent
clus2        0   1
  subtype1  24  95
  subtype2  33 144
  subtype3  35 194
subtype1 subtype2 subtype3 
     119      177      229 
subtype1 subtype2 subtype3 
      95      144      194 
$subtype1
TCGA-02-0016 TCGA-02-0023 TCGA-02-0083 TCGA-02-0089 TCGA-02-0113 TCGA-02-0115 
       55.86        20.12        22.72        16.93        92.61        15.65 
TCGA-02-0260 TCGA-02-0269 TCGA-02-0289 TCGA-02-0317 TCGA-02-0333 TCGA-02-0422 
       16.90        10.75        14.20        12.23         4.37        14.50 
TCGA-02-0430 TCGA-06-0125 TCGA-06-0126 TCGA-06-0127 TCGA-06-0157 TCGA-06-0158 
       10.55        47.31         0.10         3.55         3.19         5.46 
TCGA-06-0185 TCGA-06-0187 TCGA-06-0211 TCGA-06-0216 TCGA-06-0743 TCGA-06-0744 
       73.84        26.33        11.84        22.49        22.29        19.53 
TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0879 TCGA-06-0882 TCGA-06-1804 
        2.70        46.19         5.65        22.98         5.42        13.58 
TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2566 TCGA-06-5408 
        9.27        30.64         5.95         6.81         5.98        11.21 
TCGA-06-5415 TCGA-06-6390 TCGA-08-0244 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 
        8.55         5.36        22.68        35.64        19.50         9.17 
TCGA-08-0386 TCGA-08-0511 TCGA-08-0516 TCGA-08-0518 TCGA-08-0520 TCGA-08-0521 
       15.72         7.73        18.44         1.28        10.72         4.80 
TCGA-08-0531 TCGA-12-0656 TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0692 
        5.52        65.88         0.10        25.97        24.13         2.63 
TCGA-12-0703 TCGA-12-0707 TCGA-12-0780 TCGA-12-0819 TCGA-12-0821 TCGA-12-0826 
       18.08        28.37        14.27        24.76        10.62        27.78 
TCGA-12-0828 TCGA-12-1089 TCGA-12-1091 TCGA-12-1094 TCGA-12-1098 TCGA-12-1599 
        8.91         5.82        30.54        11.38         3.98        25.28 
TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 TCGA-12-3653 TCGA-14-0786 
       13.61        25.78        11.54        34.52        11.74        23.05 
TCGA-14-0787 TCGA-14-0790 TCGA-14-1453 TCGA-14-1459 TCGA-15-0742 TCGA-15-1446 
        2.24        13.74         1.15        12.43         9.86        19.10 
TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 TCGA-19-0955 TCGA-19-0962 TCGA-19-0964 
        0.82        13.35        18.28        11.77         0.43         3.39 
TCGA-19-1386 TCGA-19-1786 TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2620 
        9.07         7.13         3.25         0.13         9.67         4.87 
TCGA-19-2621 TCGA-19-2631 TCGA-19-4068 TCGA-19-5950 TCGA-19-5951 TCGA-19-5954 
        1.08         7.00         4.47        11.28         8.02         7.96 
TCGA-19-5958 TCGA-26-1440 TCGA-26-1443 TCGA-27-1833 TCGA-27-1835 TCGA-27-2518 
        5.39         9.73         7.10        18.25        21.30        24.72 
TCGA-27-2528 TCGA-28-1749 TCGA-28-1755 TCGA-28-1757 TCGA-28-2506 TCGA-28-5220 
       15.75         9.17         1.51         0.13         6.74        10.49 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1978 TCGA-32-1991 TCGA-32-2495 TCGA-32-4719 
        5.42        15.35        15.85        16.93        14.99        10.85 
TCGA-41-2572 TCGA-41-3392 TCGA-41-4097 TCGA-81-5910 TCGA-87-5896 
       13.35         0.99         0.20         1.61         0.07 

$subtype2
TCGA-02-0014 TCGA-02-0026 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 
       82.55        24.59         3.19        28.70        10.19        89.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0104 TCGA-02-0114 TCGA-02-0258 
        0.23        51.29        57.76        65.00        99.95        16.54 
TCGA-02-0281 TCGA-02-0321 TCGA-02-0324 TCGA-02-0325 TCGA-02-0326 TCGA-02-0332 
        3.98         9.86         7.69        10.62         0.16        25.71 
TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 
       10.59        12.39        47.11         0.66        11.34         9.24 
TCGA-02-2466 TCGA-02-2470 TCGA-02-2483 TCGA-02-2485 TCGA-06-0128 TCGA-06-0129 
       16.80        12.92        15.29        15.42        22.72        32.48 
TCGA-06-0132 TCGA-06-0133 TCGA-06-0138 TCGA-06-0142 TCGA-06-0146 TCGA-06-0160 
       18.74        14.07        22.16         2.20        20.09        11.80 
TCGA-06-0162 TCGA-06-0166 TCGA-06-0167 TCGA-06-0171 TCGA-06-0173 TCGA-06-0174 
        2.56         5.29        11.41        13.02         0.23         2.20 
TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0188 TCGA-06-0195 TCGA-06-0208 
        1.97        53.98        19.00        28.47         7.04         5.46 
TCGA-06-0214 TCGA-06-0219 TCGA-06-0221 TCGA-06-0237 TCGA-06-0238 TCGA-06-0240 
       12.43         0.33        18.02        10.32        11.80        20.42 
TCGA-06-0241 TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0646 TCGA-06-0648 
       14.96         4.67         0.16        35.01         4.47         9.63 
TCGA-06-0686 TCGA-06-0745 TCGA-06-0749 TCGA-06-0875 TCGA-06-1087 TCGA-06-1801 
        9.37         5.36         2.14        43.46         3.58         8.65 
TCGA-06-1802 TCGA-06-1805 TCGA-06-2558 TCGA-06-2559 TCGA-06-2570 TCGA-06-5411 
        7.86        33.90         0.76         4.90        31.50         8.35 
TCGA-06-5416 TCGA-06-5417 TCGA-06-5856 TCGA-06-6389 TCGA-06-6391 TCGA-08-0245 
        6.71         5.10         3.75         7.76         1.45        34.75 
TCGA-08-0344 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 TCGA-08-0350 
      108.82         1.74        13.78        10.39         7.59         3.39 
TCGA-08-0351 TCGA-08-0353 TCGA-08-0359 TCGA-08-0385 TCGA-08-0389 TCGA-08-0517 
       53.79         6.41         0.95         1.02         3.19        58.19 
TCGA-08-0524 TCGA-12-0616 TCGA-12-0618 TCGA-12-0818 TCGA-12-0820 TCGA-12-1088 
        6.51        14.40         1.61        91.73        18.48       127.56 
TCGA-12-1097 TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 
       14.53         3.39        14.04         9.44         6.38        59.41 
TCGA-12-3646 TCGA-12-3650 TCGA-12-3651 TCGA-14-0813 TCGA-14-0865 TCGA-14-0866 
       43.20        10.95        11.77         1.35        16.50        26.33 
TCGA-14-1401 TCGA-14-1451 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 
        3.75        23.11        30.15         0.92        40.93         6.12 
TCGA-14-1795 TCGA-14-1821 TCGA-14-1825 TCGA-14-1827 TCGA-14-3476 TCGA-14-3477 
        1.94        17.75         7.63         5.88         0.39         3.75 
TCGA-14-4157 TCGA-15-1444 TCGA-15-1447 TCGA-15-1449 TCGA-16-0846 TCGA-16-0848 
        3.39        50.53        53.19         5.49         3.91         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1063 TCGA-16-1460 TCGA-19-0957 
       26.07        16.31         4.27        13.97         6.41        21.86 
TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 TCGA-19-1388 TCGA-19-1390 TCGA-19-1392 
        8.61        14.27         5.95        12.95        25.38         3.48 
TCGA-19-1788 TCGA-19-2624 TCGA-19-2629 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 
        3.65         0.16        16.47         6.51         5.29         5.42 
TCGA-26-1442 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-27-1836 
       31.33         9.37        14.86         5.49         8.84        30.05 
TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 TCGA-28-1746 TCGA-28-1747 TCGA-28-1756 
       14.04        10.39        16.08         0.20         2.53         2.83 
TCGA-28-2514 TCGA-28-5204 TCGA-32-1976 TCGA-32-1980 TCGA-32-1982 TCGA-32-2634 
        5.26         3.91         0.49         1.18         4.67        22.78 
TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 TCGA-41-2571 TCGA-41-2573 
       21.14         3.68        12.59        10.62         0.85         8.94 
TCGA-41-2575 TCGA-41-5651 TCGA-76-4925 TCGA-76-4932 TCGA-76-4934 TCGA-76-4935 
        9.53        11.54         4.77        47.93         2.53        10.78 
TCGA-76-6191 TCGA-76-6192 TCGA-76-6285 
       16.67         3.29         8.32 

$subtype3
TCGA-02-0001 TCGA-02-0003 TCGA-02-0004 TCGA-02-0007 TCGA-02-0009 TCGA-02-0010 
        9.14         4.73        11.34        23.18        10.59        35.41 
TCGA-02-0011 TCGA-02-0015 TCGA-02-0021 TCGA-02-0024 TCGA-02-0025 TCGA-02-0027 
       20.71        20.61        77.62        53.06        42.74        10.36 
TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0038 TCGA-02-0039 TCGA-02-0043 
       90.58         2.83        14.14        10.72        10.52        18.28 
TCGA-02-0046 TCGA-02-0047 TCGA-02-0051 TCGA-02-0052 TCGA-02-0054 TCGA-02-0057 
        6.84        14.70        15.06        12.59         6.54        19.86 
TCGA-02-0058 TCGA-02-0059 TCGA-02-0060 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
        8.35         9.57         6.02        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0075 TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0102 
        5.49        20.84        27.22         8.81         3.48        26.99 
TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0116 TCGA-02-0266 TCGA-02-0271 
       11.67        17.65        23.15        48.95        17.69        14.47 
TCGA-02-0285 TCGA-02-0290 TCGA-02-0330 TCGA-02-0337 TCGA-02-0451 TCGA-02-0456 
       13.87        15.95        15.91        25.12        16.18         3.35 
TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0130 TCGA-06-0137 TCGA-06-0139 
       16.18         0.26         4.04        10.52        23.05        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0145 TCGA-06-0147 TCGA-06-0148 
        0.20         9.21        11.74         2.33        16.70         9.80 
TCGA-06-0149 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 
        7.82        11.80        12.79         8.65         5.39        56.84 
TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 TCGA-06-0182 TCGA-06-0184 
       19.04         3.12         2.73        90.97         2.53        40.37 
TCGA-06-0189 TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 
       14.93        10.29        18.28         4.67         2.60         0.39 
TCGA-06-0206 TCGA-06-0210 TCGA-06-0213 TCGA-06-0394 TCGA-06-0397 TCGA-06-0402 
        6.44         4.96         0.20        10.29         5.52         0.26 
TCGA-06-0409 TCGA-06-0412 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 TCGA-06-0650 
       70.52         8.05        12.33         3.22         2.04        23.57 
TCGA-06-0750 TCGA-06-0878 TCGA-06-0881 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        0.92         7.17         5.85        20.94         7.43         6.35 
TCGA-06-1800 TCGA-06-2557 TCGA-06-2562 TCGA-06-2567 TCGA-06-2569 TCGA-06-5410 
       26.79         1.08         2.83         4.37         0.43         3.52 
TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        4.54         8.81         8.98         2.73         6.12         4.54 
TCGA-08-0246 TCGA-08-0346 TCGA-08-0352 TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 
        3.91         4.34         1.28        15.06        22.52        14.70 
TCGA-08-0360 TCGA-08-0373 TCGA-08-0380 TCGA-08-0390 TCGA-08-0392 TCGA-08-0509 
       11.57         4.41        10.85        10.59         0.30         0.56 
TCGA-08-0510 TCGA-08-0512 TCGA-08-0514 TCGA-08-0522 TCGA-08-0525 TCGA-08-0529 
        3.48        11.77         8.52        18.25        15.98        17.29 
TCGA-12-0619 TCGA-12-0620 TCGA-12-0654 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 
       10.39         5.95         7.17        53.10        43.10         5.49 
TCGA-12-0776 TCGA-12-0778 TCGA-12-0822 TCGA-12-0827 TCGA-12-0829 TCGA-12-1090 
        9.11        14.83        23.51        38.76        20.58         6.21 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1095 TCGA-12-1096 TCGA-12-5295 TCGA-12-5299 
       21.63        11.97        15.85         9.11        13.08         3.22 
TCGA-12-5301 TCGA-14-0736 TCGA-14-0781 TCGA-14-0783 TCGA-14-0789 TCGA-14-0812 
        2.01        15.09         0.95         6.18        11.24         3.25 
TCGA-14-0817 TCGA-14-0867 TCGA-14-0871 TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 
        5.39         2.04        28.90        15.95        19.30         1.12 
TCGA-14-1402 TCGA-14-1452 TCGA-14-1794 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 
       32.02         7.10         0.99        17.82         7.13        17.49 
TCGA-14-2555 TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-1385 TCGA-19-1389 
        7.96        29.00         9.90         3.65        10.75         4.64 
TCGA-19-1787 TCGA-19-1790 TCGA-19-2623 TCGA-19-2625 TCGA-19-5947 TCGA-19-5952 
       12.66         5.03         7.53         4.08         6.64        18.64 
TCGA-19-5955 TCGA-26-1438 TCGA-26-1439 TCGA-26-5132 TCGA-26-5136 TCGA-26-5139 
        1.78        10.03        13.87         9.40         1.22         1.58 
TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1838 TCGA-27-2519 
        4.80        16.57         9.86        33.14        11.51        10.39 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-28-1745 TCGA-28-1750 TCGA-28-1751 
        7.59         2.86        14.40        11.31         8.32         7.59 
TCGA-28-1752 TCGA-28-1753 TCGA-28-1760 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 
        8.45         1.18         4.70         0.66         4.77         7.30 
TCGA-28-5207 TCGA-28-5208 TCGA-28-5209 TCGA-28-5213 TCGA-28-5214 TCGA-28-5215 
        9.04        15.55        14.53         9.80        14.20         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-32-1973 TCGA-32-1977 TCGA-32-1979 
       13.64         4.21         8.52        21.07         0.10        19.50 
TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 TCGA-32-2616 
       12.69        14.83        12.23        20.78        15.95         7.33 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4209 TCGA-32-4213 TCGA-41-3393 TCGA-41-3915 
        8.84        21.17        19.82        19.82         4.44        11.84 
TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 TCGA-76-4931 TCGA-76-6193 
        4.54        17.59         3.09         3.65         9.14         2.70 
TCGA-76-6282 
       17.06 

subtype1 subtype2 subtype3 
    0.07     0.16     0.10 
subtype1 subtype2 subtype3 
   92.61   127.56    90.97 
subtype1 subtype2 subtype3 
   11.21     9.93    10.03 
[1] "0.1 - 92.6 (11.2)" "0.2 - 127.6 (9.9)" "0.1 - 91.0 (10.0)"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[199] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[343] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[379] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[409] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[433] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[475] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[481] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[487] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[499] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[505] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[523] "subtype2" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[199] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[343] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[379] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[409] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[433] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[475] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[481] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[487] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[499] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[505] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[523] "subtype2" "subtype1" "subtype1"
  [1] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
  [7] "subtype3" "subtype2" "subtype3" "subtype1" "subtype3" "subtype1"
 [13] "subtype3" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [25] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
 [37] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
 [43] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [49] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
 [61] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
 [67] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [73] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype1"
 [79] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [85] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype2"
 [97] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype2"
[103] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
[127] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype2"
[133] "subtype2" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
[139] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[145] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[151] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype2" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[175] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[181] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype1"
[187] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[199] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[205] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[217] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[223] "subtype2" "subtype1" "subtype2" "subtype3" "subtype2" "subtype2"
[229] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[235] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[241] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[247] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
[253] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype2"
[259] "subtype1" "subtype1" "subtype1" "subtype3" "subtype2" "subtype3"
[265] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[271] "subtype3" "subtype1" "subtype1" "subtype1" "subtype1" "subtype1"
[277] "subtype1" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[283] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[289] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[295] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[301] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[307] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[313] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
[319] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[325] "subtype1" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[331] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[337] "subtype3" "subtype3" "subtype2" "subtype3" "subtype2" "subtype3"
[343] "subtype1" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[349] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[355] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[361] "subtype1" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[367] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[373] "subtype3" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[379] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype2"
[391] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[397] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[403] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype1"
[409] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[415] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[421] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[427] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[433] "subtype3" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[439] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[445] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[451] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[457] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[463] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[469] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype1"
[475] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[481] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[487] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype2"
[493] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
[499] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[505] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[511] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[517] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[523] "subtype2" "subtype1" "subtype1"
D2V2, continuous
D2V3, binary
          cls
clus         0   1
  subtype1  49  70
  subtype2  64 113
  subtype3  92 137
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   49   70
  subtype2   64  113
  subtype3   92  137
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       49       64       92
  MALE         70      113      137
D2V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             0                   5
  subtype2                             5                   4
  subtype3                             1                  11
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             114
  subtype2                             168
  subtype3                             217
D2V5, multiclass
D2V6, binary
          cls
clus         0   1
  subtype1  85  34
  subtype2 112  65
  subtype3 163  66
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   85   34
  subtype2  112   65
  subtype3  163   66
     clus
vv    subtype1 subtype2 subtype3
  NO        85      112      163
  YES       34       65       66

Clustering(3) Variable = MIR_CNMF
D3V1, survival
          sevent
clus2        0   1
  subtype1  29 136
  subtype2  41 141
  subtype3  18  72
  subtype4  24  99
subtype1 subtype2 subtype3 subtype4 
     165      182       90      123 
subtype1 subtype2 subtype3 subtype4 
     136      141       72       99 
$subtype1
TCGA-02-0001 TCGA-02-0004 TCGA-02-0006 TCGA-02-0009 TCGA-02-0015 TCGA-02-0027 
        9.14        11.34        18.35        10.59        20.61        10.36 
TCGA-02-0033 TCGA-02-0037 TCGA-02-0038 TCGA-02-0039 TCGA-02-0051 TCGA-02-0054 
        2.83         3.58        10.72        10.52        15.06         6.54 
TCGA-02-0055 TCGA-02-0057 TCGA-02-0059 TCGA-02-0070 TCGA-02-0071 TCGA-02-0075 
        2.50        19.86         9.57        25.05         5.49        20.84 
TCGA-02-0079 TCGA-02-0086 TCGA-02-0099 TCGA-02-0115 TCGA-02-0289 TCGA-02-0290 
       27.22         8.81         3.48        15.65        14.20        15.95 
TCGA-02-0324 TCGA-02-0326 TCGA-02-0422 TCGA-02-2486 TCGA-06-0122 TCGA-06-0147 
        7.69         0.16        14.50        16.18         0.26        16.70 
TCGA-06-0151 TCGA-06-0159 TCGA-06-0174 TCGA-06-0176 TCGA-06-0184 TCGA-06-0187 
       46.59         9.44         2.20        90.97        40.37        26.33 
TCGA-06-0190 TCGA-06-0192 TCGA-06-0194 TCGA-06-0197 TCGA-06-0211 TCGA-06-0213 
       10.29        18.28         4.67         2.60        11.84         0.20 
TCGA-06-0214 TCGA-06-0394 TCGA-06-0397 TCGA-06-0412 TCGA-06-0644 TCGA-06-0649 
       12.43        10.29         5.52         8.05        12.33         2.04 
TCGA-06-0745 TCGA-06-0749 TCGA-06-0878 TCGA-06-1800 TCGA-06-2562 TCGA-06-5414 
        5.36         2.14         7.17        26.79         2.83         8.98 
TCGA-06-5418 TCGA-06-5858 TCGA-06-6390 TCGA-06-6697 TCGA-06-6698 TCGA-08-0244 
        2.73         6.12         5.36        12.85         4.77        22.68 
TCGA-08-0246 TCGA-08-0345 TCGA-08-0346 TCGA-08-0352 TCGA-08-0354 TCGA-08-0360 
        3.91         1.74         4.34         1.28        15.06        11.57 
TCGA-08-0380 TCGA-08-0390 TCGA-08-0509 TCGA-08-0510 TCGA-08-0511 TCGA-08-0512 
       10.85        10.59         0.56         3.48         7.73        11.77 
TCGA-08-0514 TCGA-08-0518 TCGA-08-0521 TCGA-08-0522 TCGA-08-0525 TCGA-08-0529 
        8.52         1.28         4.80        18.25        15.98        17.29 
TCGA-08-0531 TCGA-12-0619 TCGA-12-0657 TCGA-12-0662 TCGA-12-0776 TCGA-12-0822 
        5.52        10.39         0.10        38.17         9.11        23.51 
TCGA-12-0826 TCGA-12-0828 TCGA-12-0829 TCGA-12-1094 TCGA-12-1095 TCGA-12-1097 
       27.78         8.91        20.58        11.38        15.85        14.53 
TCGA-12-1599 TCGA-12-3648 TCGA-12-3649 TCGA-12-5295 TCGA-12-5299 TCGA-12-5301 
       25.28        25.78        11.54        13.08         3.22         2.01 
TCGA-14-0736 TCGA-14-0781 TCGA-14-0789 TCGA-14-0862 TCGA-14-1034 TCGA-14-1037 
       15.09         0.95        11.24         2.89        15.95        19.30 
TCGA-14-1043 TCGA-14-1450 TCGA-14-1452 TCGA-14-1459 TCGA-14-1823 TCGA-14-1829 
        0.79        58.78         7.10        12.43        17.82         7.13 
TCGA-15-0742 TCGA-16-1045 TCGA-16-1055 TCGA-16-1060 TCGA-19-0955 TCGA-19-0962 
        9.86        29.00         9.90         3.65        11.77         0.43 
TCGA-19-1385 TCGA-19-1386 TCGA-19-1388 TCGA-19-1389 TCGA-19-1790 TCGA-19-2619 
       10.75         9.07        12.95         4.64         5.03         9.67 
TCGA-19-2621 TCGA-19-2623 TCGA-19-5947 TCGA-19-5952 TCGA-19-5954 TCGA-19-5955 
        1.08         7.53         6.64        18.64         7.96         1.78 
TCGA-19-5958 TCGA-26-1438 TCGA-26-5139 TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 
        5.39        10.03         1.58        16.57         9.86        33.14 
TCGA-27-2524 TCGA-27-2526 TCGA-27-2527 TCGA-27-2528 TCGA-28-1745 TCGA-28-1751 
        7.59         2.86        14.40        15.75        11.31         7.59 
TCGA-28-1753 TCGA-28-2502 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
        1.18         0.66         4.77         7.30         3.91        15.55 
TCGA-28-5209 TCGA-32-1979 TCGA-32-1987 TCGA-32-1991 TCGA-32-2616 TCGA-32-2632 
       14.53        19.50        14.83        16.93         7.33         8.84 
TCGA-32-2638 TCGA-32-4209 TCGA-32-4213 TCGA-32-4719 TCGA-41-3915 TCGA-41-4097 
       21.17        19.82        19.82        10.85        11.84         0.20 
TCGA-74-6578 TCGA-76-4927 TCGA-76-4931 TCGA-76-4932 TCGA-76-6193 TCGA-76-6282 
       14.33        17.59         9.14        47.93         2.70        17.06 
TCGA-76-6657 TCGA-76-6662 TCGA-81-5911 
        5.03         9.24        17.69 

$subtype2
TCGA-02-0003 TCGA-02-0007 TCGA-02-0010 TCGA-02-0014 TCGA-02-0016 TCGA-02-0026 
        4.73        23.18        35.41        82.55        55.86        24.59 
TCGA-02-0043 TCGA-02-0048 TCGA-02-0069 TCGA-02-0074 TCGA-02-0080 TCGA-02-0083 
       18.28         3.19        28.70        10.19        89.72        22.72 
TCGA-02-0084 TCGA-02-0087 TCGA-02-0102 TCGA-02-0104 TCGA-02-0114 TCGA-02-0116 
        0.23        57.76        26.99        65.00        99.95        48.95 
TCGA-02-0258 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0281 TCGA-02-0321 
       16.54        16.90        10.75        14.47         3.98         9.86 
TCGA-02-0430 TCGA-02-0440 TCGA-02-2466 TCGA-02-2483 TCGA-02-2485 TCGA-06-0125 
       10.55        11.34        16.80        15.29        15.42        47.31 
TCGA-06-0128 TCGA-06-0129 TCGA-06-0137 TCGA-06-0138 TCGA-06-0145 TCGA-06-0146 
       22.72        32.48        23.05        22.16         2.33        20.09 
TCGA-06-0157 TCGA-06-0158 TCGA-06-0173 TCGA-06-0178 TCGA-06-0182 TCGA-06-0185 
        3.19         5.46         0.23        53.98         2.53        73.84 
TCGA-06-0208 TCGA-06-0216 TCGA-06-0237 TCGA-06-0402 TCGA-06-0410 TCGA-06-0646 
        5.46        22.49        10.32         0.26         4.67         4.47 
TCGA-06-0648 TCGA-06-0875 TCGA-06-0879 TCGA-06-1087 TCGA-06-2557 TCGA-06-2559 
        9.63        43.46        22.98         3.58         1.08         4.90 
TCGA-06-2565 TCGA-06-2567 TCGA-06-2570 TCGA-06-5408 TCGA-06-5413 TCGA-06-5416 
        6.81         4.37        31.50        11.21         8.81         6.71 
TCGA-06-5417 TCGA-06-5856 TCGA-06-5859 TCGA-06-6389 TCGA-06-6695 TCGA-06-6699 
        5.10         3.75         4.54         7.76         8.28         1.55 
TCGA-06-6701 TCGA-08-0245 TCGA-08-0344 TCGA-08-0349 TCGA-08-0350 TCGA-08-0355 
        4.96        34.75       108.82         7.59         3.39        22.52 
TCGA-08-0357 TCGA-08-0375 TCGA-08-0385 TCGA-08-0386 TCGA-08-0389 TCGA-08-0516 
       35.64         9.17         1.02        15.72         3.19        18.44 
TCGA-08-0517 TCGA-08-0520 TCGA-12-0618 TCGA-12-0670 TCGA-12-0691 TCGA-12-0692 
       58.19        10.72         1.61        25.97         6.08         2.63 
TCGA-12-0707 TCGA-12-0769 TCGA-12-0772 TCGA-12-0773 TCGA-12-0775 TCGA-12-0820 
       28.37        12.43        53.10        43.10         5.49        18.48 
TCGA-12-0821 TCGA-12-0827 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 
       10.62        38.76       127.56         5.82         6.21        30.54 
TCGA-12-1098 TCGA-12-1598 TCGA-12-1600 TCGA-12-3646 TCGA-12-3650 TCGA-12-3653 
        3.98         9.44        13.61        43.20        10.95        11.74 
TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 TCGA-14-0817 TCGA-14-0865 
        6.18        23.05         2.24        13.74         5.39        16.50 
TCGA-14-1395 TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1821 
        1.38         1.15        30.15         0.92        40.93        17.75 
TCGA-14-1825 TCGA-14-2554 TCGA-14-3477 TCGA-14-4157 TCGA-15-1444 TCGA-16-0848 
        7.63        17.49         3.75         3.39        50.53         9.93 
TCGA-16-0849 TCGA-16-0850 TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 TCGA-16-1063 
       26.07        16.31         0.82        13.35        18.28        13.97 
TCGA-16-1460 TCGA-19-0960 TCGA-19-0964 TCGA-19-1390 TCGA-19-1392 TCGA-19-1786 
        6.41         8.61         3.39        25.38         3.48         7.13 
TCGA-19-1787 TCGA-19-1789 TCGA-19-1791 TCGA-19-2624 TCGA-19-2629 TCGA-19-2631 
       12.66         3.25         0.13         0.16        16.47         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5956 TCGA-19-5959 TCGA-19-5960 
       11.28         8.02         4.73         6.51         5.29         5.42 
TCGA-26-1440 TCGA-26-5133 TCGA-26-5135 TCGA-26-5136 TCGA-27-1833 TCGA-27-1835 
        9.73        14.86         8.84         1.22        18.25        21.30 
TCGA-27-1837 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-28-1746 TCGA-28-1747 
       14.04        10.39        10.39        16.08         0.20         2.53 
TCGA-28-1749 TCGA-28-2514 TCGA-28-5207 TCGA-28-5215 TCGA-28-5220 TCGA-28-6450 
        9.17         5.26         9.04         7.79        10.49         5.42 
TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 
       15.35        21.07         0.49        22.78        21.14         3.68 
TCGA-32-4211 TCGA-32-5222 TCGA-41-2575 TCGA-41-3393 TCGA-41-5651 TCGA-74-6573 
       12.59        10.62         9.53         4.44        11.54         3.45 
TCGA-74-6577 TCGA-76-4925 TCGA-76-4929 TCGA-76-6191 TCGA-76-6285 TCGA-76-6286 
        4.31         4.77         3.65        16.67         8.32        20.94 
TCGA-76-6656 TCGA-87-5896 
        4.83         0.07 

$subtype3
TCGA-02-0011 TCGA-02-0023 TCGA-02-0024 TCGA-02-0052 TCGA-02-0058 TCGA-02-0060 
       20.71        20.12        53.06        12.59         8.35         6.02 
TCGA-02-0085 TCGA-02-0089 TCGA-02-0325 TCGA-02-0330 TCGA-02-0338 TCGA-02-0339 
       51.29        16.93        10.62        15.91        10.59        12.39 
TCGA-02-0439 TCGA-02-0446 TCGA-02-0451 TCGA-02-2470 TCGA-06-0126 TCGA-06-0142 
        0.66         9.24        16.18        12.92         0.10         2.20 
TCGA-06-0160 TCGA-06-0162 TCGA-06-0171 TCGA-06-0177 TCGA-06-0179 TCGA-06-0195 
       11.80         2.56        13.02         1.97        19.00         7.04 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0240 TCGA-06-0241 TCGA-06-0413 TCGA-06-0414 
        0.33        18.02        20.42        14.96         0.16        35.01 
TCGA-06-0686 TCGA-06-0747 TCGA-06-0750 TCGA-06-0882 TCGA-06-0939 TCGA-06-1801 
        9.37         2.70         0.92         5.42        20.94         8.65 
TCGA-06-1804 TCGA-06-2558 TCGA-06-2561 TCGA-06-2564 TCGA-06-2566 TCGA-06-5411 
       13.58         0.76         9.27         5.95         5.98         8.35 
TCGA-06-5415 TCGA-06-6388 TCGA-06-6391 TCGA-06-6694 TCGA-06-6700 TCGA-08-0347 
        8.55         3.91         1.45         7.36         4.77        13.78 
TCGA-08-0348 TCGA-08-0351 TCGA-08-0359 TCGA-12-0780 TCGA-12-1099 TCGA-12-1597 
       10.39        53.79         0.95        14.27         3.39        14.04 
TCGA-14-0812 TCGA-14-0866 TCGA-14-0867 TCGA-14-1451 TCGA-14-1458 TCGA-14-1827 
        3.25        26.33         2.04        23.11         6.12         5.88 
TCGA-14-3476 TCGA-15-1446 TCGA-15-1449 TCGA-16-0846 TCGA-16-0861 TCGA-19-0963 
        0.39        19.10         5.49         3.91         4.27        14.27 
TCGA-19-1387 TCGA-19-1788 TCGA-19-2620 TCGA-26-1442 TCGA-26-1799 TCGA-26-5134 
        5.95         3.65         4.87        31.33         9.37         5.49 
TCGA-26-6174 TCGA-27-1836 TCGA-27-2518 TCGA-28-1752 TCGA-28-1756 TCGA-28-2506 
        2.30        30.05        24.72         8.45         2.83         6.74 
TCGA-28-5219 TCGA-32-1980 TCGA-32-2495 TCGA-41-2573 TCGA-41-3392 TCGA-74-6575 
        8.52         1.18        14.99         8.94         0.99        20.88 
TCGA-74-6584 TCGA-76-4926 TCGA-76-4934 TCGA-76-4935 TCGA-76-6192 TCGA-76-6663 
        7.46         4.54         2.53        10.78         3.29         7.69 

$subtype4
TCGA-02-0021 TCGA-02-0025 TCGA-02-0028 TCGA-02-0034 TCGA-02-0047 TCGA-02-0064 
       77.62        42.74        90.58        14.14        14.70        19.73 
TCGA-02-0068 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 TCGA-02-0266 
       26.43        11.67        17.65        23.15        92.61        17.69 
TCGA-02-0285 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 TCGA-02-0337 TCGA-02-0432 
       13.87        12.23        25.71         4.37        25.12        47.11 
TCGA-02-0456 TCGA-06-0124 TCGA-06-0127 TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 
        3.35         4.04         3.55        10.52        14.07        10.75 
TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 TCGA-06-0149 TCGA-06-0150 TCGA-06-0152 
        0.20         9.21        11.74         7.82        19.46        11.80 
TCGA-06-0154 TCGA-06-0155 TCGA-06-0156 TCGA-06-0164 TCGA-06-0166 TCGA-06-0168 
       12.79         8.65         5.39        56.84         5.29        19.04 
TCGA-06-0169 TCGA-06-0175 TCGA-06-0188 TCGA-06-0189 TCGA-06-0210 TCGA-06-0238 
        3.12         2.73        28.47        14.93         4.96        11.80 
TCGA-06-0409 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0876 
       70.52         3.22        23.57        22.29        19.53        46.19 
TCGA-06-0877 TCGA-06-0881 TCGA-06-1084 TCGA-06-1086 TCGA-06-1802 TCGA-06-1805 
        5.65         5.85         7.43         6.35         7.86        33.90 
TCGA-06-2563 TCGA-06-2569 TCGA-06-5410 TCGA-06-5412 TCGA-06-6693 TCGA-08-0353 
       30.64         0.43         3.52         4.54         0.49         6.41 
TCGA-08-0356 TCGA-08-0358 TCGA-08-0373 TCGA-08-0392 TCGA-08-0524 TCGA-12-0616 
       14.70        19.50         4.41         0.30         6.51        14.40 
TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0688 TCGA-12-0703 TCGA-12-0778 
        5.95         7.17        65.88        24.13        18.08        14.83 
TCGA-12-1092 TCGA-12-1093 TCGA-12-1096 TCGA-12-1602 TCGA-12-3644 TCGA-12-3651 
       21.63        11.97         9.11         6.38        59.41        11.77 
TCGA-12-3652 TCGA-14-0740 TCGA-14-0813 TCGA-14-0871 TCGA-14-1396 TCGA-14-1401 
       34.52        11.97         1.35        28.90         1.12         3.75 
TCGA-14-1402 TCGA-14-1794 TCGA-14-1795 TCGA-14-2555 TCGA-15-1447 TCGA-19-0957 
       32.02         0.99         1.94         7.96        53.19        21.86 
TCGA-19-2625 TCGA-19-4068 TCGA-26-1439 TCGA-26-1443 TCGA-26-5132 TCGA-26-6173 
        4.08         4.47        13.87         7.10         9.40         7.92 
TCGA-27-1830 TCGA-27-1838 TCGA-28-1750 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 
        4.80        11.51         8.32         1.51         0.13         4.70 
TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 TCGA-32-1977 
       11.77         9.80        14.20        13.64         4.21         0.10 
TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 TCGA-32-2615 
       15.85         4.67        12.69        12.23        20.78        15.95 
TCGA-41-2571 TCGA-41-2572 TCGA-41-6646 TCGA-74-6581 TCGA-76-4928 TCGA-76-6280 
        0.85        13.35         7.73         8.22         3.09        11.38 
TCGA-76-6661 TCGA-76-6664 TCGA-81-5910 
        0.23         7.76         1.61 

subtype1 subtype2 subtype3 subtype4 
    0.10     0.07     0.10     0.10 
subtype1 subtype2 subtype3 subtype4 
   90.97   127.56    53.79    92.61 
subtype1 subtype2 subtype3 subtype4 
   10.29    10.39     8.40    11.51 
[1] "0.1 - 91.0 (10.3)"  "0.1 - 127.6 (10.4)" "0.1 - 53.8 (8.4)"  
[4] "0.1 - 92.6 (11.5)" 
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[109] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[115] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype4"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype4"
[175] "subtype4" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
[193] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[205] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[211] "subtype4" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype3" "subtype4" "subtype3" "subtype2" "subtype1"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
[247] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[253] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[277] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype1"
[283] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[295] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[301] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[313] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[319] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
[337] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[343] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[355] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[367] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
[373] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[397] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[415] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[421] "subtype4" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[427] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[433] "subtype1" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
[439] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[445] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype3"
[457] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[469] "subtype1" "subtype3" "subtype1" "subtype4" "subtype3" "subtype4"
[475] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
[487] "subtype4" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[493] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[499] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[505] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype1"
[511] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[517] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[523] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[529] "subtype4" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
[535] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[541] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[547] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[553] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[559] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[109] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[115] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype4"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype4"
[175] "subtype4" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
[193] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[205] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[211] "subtype4" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype3" "subtype4" "subtype3" "subtype2" "subtype1"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
[247] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[253] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[277] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype1"
[283] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[295] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[301] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[313] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[319] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
[337] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[343] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[355] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[367] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
[373] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[397] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[415] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[421] "subtype4" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[427] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[433] "subtype1" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
[439] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[445] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype3"
[457] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[469] "subtype1" "subtype3" "subtype1" "subtype4" "subtype3" "subtype4"
[475] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
[487] "subtype4" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[493] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[499] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[505] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype1"
[511] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[517] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[523] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[529] "subtype4" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
[535] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[541] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[547] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[553] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[559] "subtype1" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype1"
  [7] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype4"
 [13] "subtype3" "subtype3" "subtype4" "subtype2" "subtype1" "subtype4"
 [19] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype2"
 [25] "subtype4" "subtype2" "subtype1" "subtype3" "subtype1" "subtype1"
 [31] "subtype1" "subtype3" "subtype1" "subtype3" "subtype4" "subtype4"
 [37] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
 [43] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype1" "subtype2" "subtype2" "subtype4" "subtype4"
 [55] "subtype4" "subtype4" "subtype2" "subtype1" "subtype2" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype2" "subtype2" "subtype4"
 [67] "subtype1" "subtype1" "subtype4" "subtype2" "subtype1" "subtype3"
 [73] "subtype1" "subtype3" "subtype4" "subtype4" "subtype4" "subtype3"
 [79] "subtype3" "subtype1" "subtype2" "subtype4" "subtype3" "subtype2"
 [85] "subtype3" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
 [91] "subtype2" "subtype1" "subtype1" "subtype4" "subtype2" "subtype3"
 [97] "subtype4" "subtype2" "subtype2" "subtype4" "subtype4" "subtype2"
[103] "subtype2" "subtype4" "subtype4" "subtype4" "subtype3" "subtype4"
[109] "subtype2" "subtype2" "subtype1" "subtype4" "subtype4" "subtype1"
[115] "subtype4" "subtype4" "subtype4" "subtype4" "subtype2" "subtype2"
[121] "subtype1" "subtype3" "subtype3" "subtype4" "subtype4" "subtype4"
[127] "subtype4" "subtype3" "subtype2" "subtype1" "subtype4" "subtype1"
[133] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[139] "subtype1" "subtype4" "subtype4" "subtype1" "subtype1" "subtype1"
[145] "subtype3" "subtype1" "subtype2" "subtype4" "subtype1" "subtype1"
[151] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype4"
[157] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype4"
[163] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype4"
[169] "subtype2" "subtype2" "subtype1" "subtype4" "subtype3" "subtype4"
[175] "subtype4" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[181] "subtype4" "subtype4" "subtype1" "subtype2" "subtype4" "subtype3"
[187] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
[193] "subtype4" "subtype3" "subtype4" "subtype2" "subtype3" "subtype2"
[199] "subtype3" "subtype1" "subtype4" "subtype3" "subtype2" "subtype3"
[205] "subtype2" "subtype4" "subtype2" "subtype2" "subtype4" "subtype3"
[211] "subtype4" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[217] "subtype1" "subtype2" "subtype1" "subtype2" "subtype3" "subtype2"
[223] "subtype1" "subtype3" "subtype4" "subtype3" "subtype2" "subtype1"
[229] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[235] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype2" "subtype3" "subtype1" "subtype4" "subtype1"
[247] "subtype2" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[253] "subtype4" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[259] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype1"
[265] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[271] "subtype1" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[277] "subtype2" "subtype1" "subtype4" "subtype4" "subtype4" "subtype1"
[283] "subtype1" "subtype2" "subtype4" "subtype2" "subtype2" "subtype4"
[289] "subtype2" "subtype2" "subtype2" "subtype2" "subtype2" "subtype1"
[295] "subtype4" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[301] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[307] "subtype2" "subtype4" "subtype4" "subtype1" "subtype1" "subtype4"
[313] "subtype1" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[319] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype1"
[331] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype2"
[337] "subtype2" "subtype1" "subtype2" "subtype3" "subtype4" "subtype2"
[343] "subtype1" "subtype2" "subtype3" "subtype3" "subtype4" "subtype1"
[349] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype4"
[355] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[361] "subtype2" "subtype3" "subtype1" "subtype4" "subtype4" "subtype2"
[367] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype4"
[373] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype3"
[379] "subtype4" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
[385] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype1"
[391] "subtype2" "subtype2" "subtype2" "subtype1" "subtype4" "subtype2"
[397] "subtype1" "subtype3" "subtype2" "subtype1" "subtype1" "subtype3"
[403] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[409] "subtype3" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[415] "subtype1" "subtype1" "subtype2" "subtype4" "subtype2" "subtype2"
[421] "subtype4" "subtype1" "subtype2" "subtype2" "subtype1" "subtype2"
[427] "subtype1" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[433] "subtype1" "subtype4" "subtype2" "subtype3" "subtype4" "subtype3"
[439] "subtype4" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[445] "subtype4" "subtype3" "subtype4" "subtype1" "subtype1" "subtype2"
[451] "subtype1" "subtype2" "subtype3" "subtype2" "subtype4" "subtype3"
[457] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[463] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype4"
[469] "subtype1" "subtype3" "subtype1" "subtype4" "subtype3" "subtype4"
[475] "subtype4" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype4" "subtype4"
[487] "subtype4" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
[493] "subtype2" "subtype2" "subtype2" "subtype2" "subtype4" "subtype4"
[499] "subtype1" "subtype3" "subtype4" "subtype4" "subtype1" "subtype1"
[505] "subtype4" "subtype4" "subtype3" "subtype4" "subtype1" "subtype1"
[511] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[517] "subtype1" "subtype1" "subtype2" "subtype4" "subtype4" "subtype3"
[523] "subtype2" "subtype3" "subtype2" "subtype1" "subtype1" "subtype2"
[529] "subtype4" "subtype2" "subtype3" "subtype2" "subtype1" "subtype4"
[535] "subtype3" "subtype2" "subtype3" "subtype1" "subtype4" "subtype2"
[541] "subtype1" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
[547] "subtype1" "subtype4" "subtype1" "subtype2" "subtype2" "subtype2"
[553] "subtype1" "subtype4" "subtype1" "subtype3" "subtype4" "subtype4"
[559] "subtype1" "subtype2"
D3V2, continuous
D3V3, binary
          cls
clus         0   1
  subtype1  63 102
  subtype2  76 106
  subtype3  36  54
  subtype4  43  80
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   63  102
  subtype2   76  106
  subtype3   36   54
  subtype4   43   80
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       63       76       36       43
  MALE        102      106       54       80
D3V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             2                   4
  subtype2                             1                   8
  subtype3                             3                   5
  subtype4                             2                   3
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             159
  subtype2                             173
  subtype3                              82
  subtype4                             118
D3V5, multiclass
D3V6, binary
          cls
clus         0   1
  subtype1 118  47
  subtype2 131  51
  subtype3  57  33
  subtype4  83  40
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  118   47
  subtype2  131   51
  subtype3   57   33
  subtype4   83   40
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO       118      131       57       83
  YES       47       51       33       40

Clustering(4) Variable = MIR_CHIERARCHICAL
D4V1, survival
          sevent
clus2        0   1
  subtype1  39 139
  subtype2  40 148
  subtype3  33 161
subtype1 subtype2 subtype3 
     178      188      194 
subtype1 subtype2 subtype3 
     139      148      161 
$subtype1
TCGA-02-0007 TCGA-02-0009 TCGA-02-0016 TCGA-02-0027 TCGA-02-0028 TCGA-02-0043 
       23.18        10.59        55.86        10.36        90.58        18.28 
TCGA-02-0054 TCGA-02-0058 TCGA-02-0075 TCGA-02-0083 TCGA-02-0099 TCGA-02-0102 
        6.54         8.35        20.84        22.72         3.48        26.99 
TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 TCGA-02-0271 TCGA-02-0289 TCGA-02-0324 
       48.95        16.90        10.75        14.47        14.20         7.69 
TCGA-02-0422 TCGA-02-0430 TCGA-02-2485 TCGA-06-0125 TCGA-06-0137 TCGA-06-0138 
       14.50        10.55        15.42        47.31        23.05        22.16 
TCGA-06-0145 TCGA-06-0157 TCGA-06-0173 TCGA-06-0174 TCGA-06-0182 TCGA-06-0187 
        2.33         3.19         0.23         2.20         2.53        26.33 
TCGA-06-0192 TCGA-06-0208 TCGA-06-0211 TCGA-06-0213 TCGA-06-0216 TCGA-06-0237 
       18.28         5.46        11.84         0.20        22.49        10.32 
TCGA-06-0402 TCGA-06-0646 TCGA-06-0649 TCGA-06-0749 TCGA-06-0879 TCGA-06-2557 
        0.26         4.47         2.04         2.14        22.98         1.08 
TCGA-06-2562 TCGA-06-2565 TCGA-06-2567 TCGA-06-5408 TCGA-06-5416 TCGA-06-5858 
        2.83         6.81         4.37        11.21         6.71         6.12 
TCGA-06-5859 TCGA-06-6390 TCGA-06-6695 TCGA-06-6697 TCGA-06-6698 TCGA-06-6699 
        4.54         5.36         8.28        12.85         4.77         1.55 
TCGA-08-0245 TCGA-08-0355 TCGA-08-0357 TCGA-08-0360 TCGA-08-0510 TCGA-08-0514 
       34.75        22.52        35.64        11.57         3.48         8.52 
TCGA-08-0516 TCGA-08-0517 TCGA-08-0518 TCGA-08-0520 TCGA-08-0525 TCGA-08-0529 
       18.44        58.19         1.28        10.72        15.98        17.29 
TCGA-08-0531 TCGA-12-0619 TCGA-12-0657 TCGA-12-0662 TCGA-12-0688 TCGA-12-0691 
        5.52        10.39         0.10        38.17        24.13         6.08 
TCGA-12-0692 TCGA-12-0707 TCGA-12-0769 TCGA-12-0775 TCGA-12-0821 TCGA-12-0826 
        2.63        28.37        12.43         5.49        10.62        27.78 
TCGA-12-0827 TCGA-12-1088 TCGA-12-1089 TCGA-12-1090 TCGA-12-1091 TCGA-12-1098 
       38.76       127.56         5.82         6.21        30.54         3.98 
TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 TCGA-12-3652 TCGA-12-3653 
       25.28        13.61        25.78        11.54        34.52        11.74 
TCGA-12-5299 TCGA-14-0736 TCGA-14-0783 TCGA-14-0786 TCGA-14-0787 TCGA-14-0790 
        3.22        15.09         6.18        23.05         2.24        13.74 
TCGA-14-0817 TCGA-14-1395 TCGA-14-1450 TCGA-14-1452 TCGA-14-1453 TCGA-14-1459 
        5.39         1.38        58.78         7.10         1.15        12.43 
TCGA-14-1823 TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-15-0742 TCGA-15-1446 
       17.82         5.88         7.13        17.49         9.86        19.10 
TCGA-16-0848 TCGA-16-0849 TCGA-16-1045 TCGA-16-1047 TCGA-16-1056 TCGA-16-1062 
        9.93        26.07        29.00         0.82        13.35        18.28 
TCGA-19-0955 TCGA-19-0962 TCGA-19-1386 TCGA-19-1388 TCGA-19-1786 TCGA-19-1787 
       11.77         0.43         9.07        12.95         7.13        12.66 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2619 TCGA-19-2623 TCGA-19-2629 TCGA-19-2631 
        3.25         0.13         9.67         7.53        16.47         7.00 
TCGA-19-5950 TCGA-19-5951 TCGA-19-5953 TCGA-19-5954 TCGA-19-5958 TCGA-19-5959 
       11.28         8.02         4.73         7.96         5.39         5.29 
TCGA-19-5960 TCGA-26-1438 TCGA-26-1440 TCGA-26-5136 TCGA-26-5139 TCGA-27-1833 
        5.42        10.03         9.73         1.22         1.58        18.25 
TCGA-27-1834 TCGA-27-1835 TCGA-27-2523 TCGA-27-2526 TCGA-28-1749 TCGA-28-1750 
       33.14        21.30        16.08         2.86         9.17         8.32 
TCGA-28-2509 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5215 TCGA-28-5220 
        4.77         3.91        15.55        14.53         7.79        10.49 
TCGA-32-1979 TCGA-32-1987 TCGA-32-2616 TCGA-32-4209 TCGA-32-4211 TCGA-32-4213 
       19.50        14.83         7.33        19.82        12.59        19.82 
TCGA-32-5222 TCGA-41-2575 TCGA-41-3392 TCGA-41-3393 TCGA-41-3915 TCGA-41-4097 
       10.62         9.53         0.99         4.44        11.84         0.20 
TCGA-74-6573 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 TCGA-76-4925 TCGA-76-4929 
        3.45        20.88         4.31        14.33         4.77         3.65 
TCGA-76-4931 TCGA-76-4932 TCGA-76-6193 TCGA-76-6282 TCGA-76-6285 TCGA-76-6286 
        9.14        47.93         2.70        17.06         8.32        20.94 
TCGA-76-6656 TCGA-76-6657 TCGA-81-5911 TCGA-87-5896 
        4.83         5.03        17.69         0.07 

$subtype2
TCGA-02-0001 TCGA-02-0003 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0024 
        9.14         4.73        35.41        20.71        82.55        53.06 
TCGA-02-0026 TCGA-02-0038 TCGA-02-0048 TCGA-02-0052 TCGA-02-0057 TCGA-02-0060 
       24.59        10.72         3.19        12.59        19.86         6.02 
TCGA-02-0069 TCGA-02-0074 TCGA-02-0079 TCGA-02-0080 TCGA-02-0084 TCGA-02-0087 
       28.70        10.19        27.22        89.72         0.23        57.76 
TCGA-02-0089 TCGA-02-0104 TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 TCGA-02-0281 
       16.93        65.00        99.95        15.65        16.54         3.98 
TCGA-02-0321 TCGA-02-0325 TCGA-02-0326 TCGA-02-0330 TCGA-02-0338 TCGA-02-0339 
        9.86        10.62         0.16        15.91        10.59        12.39 
TCGA-02-0432 TCGA-02-0439 TCGA-02-0440 TCGA-02-0446 TCGA-02-0451 TCGA-02-2466 
       47.11         0.66        11.34         9.24        16.18        16.80 
TCGA-02-2470 TCGA-02-2483 TCGA-06-0126 TCGA-06-0128 TCGA-06-0129 TCGA-06-0142 
       12.92        15.29         0.10        22.72        32.48         2.20 
TCGA-06-0146 TCGA-06-0147 TCGA-06-0158 TCGA-06-0159 TCGA-06-0160 TCGA-06-0162 
       20.09        16.70         5.46         9.44        11.80         2.56 
TCGA-06-0166 TCGA-06-0171 TCGA-06-0177 TCGA-06-0178 TCGA-06-0179 TCGA-06-0184 
        5.29        13.02         1.97        53.98        19.00        40.37 
TCGA-06-0185 TCGA-06-0195 TCGA-06-0214 TCGA-06-0221 TCGA-06-0240 TCGA-06-0241 
       73.84         7.04        12.43        18.02        20.42        14.96 
TCGA-06-0410 TCGA-06-0413 TCGA-06-0414 TCGA-06-0648 TCGA-06-0686 TCGA-06-0750 
        4.67         0.16        35.01         9.63         9.37         0.92 
TCGA-06-0875 TCGA-06-0882 TCGA-06-0939 TCGA-06-1087 TCGA-06-1801 TCGA-06-1805 
       43.46         5.42        20.94         3.58         8.65        33.90 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2561 TCGA-06-2564 TCGA-06-2570 TCGA-06-5411 
        0.76         4.90         9.27         5.95        31.50         8.35 
TCGA-06-5417 TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6700 TCGA-06-6701 
        5.10         3.91         7.76         1.45         4.77         4.96 
TCGA-08-0244 TCGA-08-0344 TCGA-08-0345 TCGA-08-0347 TCGA-08-0348 TCGA-08-0349 
       22.68       108.82         1.74        13.78        10.39         7.59 
TCGA-08-0350 TCGA-08-0351 TCGA-08-0352 TCGA-08-0359 TCGA-08-0375 TCGA-08-0380 
        3.39        53.79         1.28         0.95         9.17        10.85 
TCGA-08-0385 TCGA-08-0389 TCGA-08-0390 TCGA-08-0524 TCGA-12-0618 TCGA-12-0670 
        1.02         3.19        10.59         6.51         1.61        25.97 
TCGA-12-0772 TCGA-12-0773 TCGA-12-0780 TCGA-12-0820 TCGA-12-1095 TCGA-12-1097 
       53.10        43.10        14.27        18.48        15.85        14.53 
TCGA-12-1099 TCGA-12-1597 TCGA-12-1598 TCGA-12-3646 TCGA-12-3650 TCGA-12-5301 
        3.39        14.04         9.44        43.20        10.95         2.01 
TCGA-14-0812 TCGA-14-0813 TCGA-14-0865 TCGA-14-0867 TCGA-14-1043 TCGA-14-1451 
        3.25         1.35        16.50         2.04         0.79        23.11 
TCGA-14-1454 TCGA-14-1455 TCGA-14-1456 TCGA-14-1458 TCGA-14-1795 TCGA-14-1821 
       30.15         0.92        40.93         6.12         1.94        17.75 
TCGA-14-1825 TCGA-14-3476 TCGA-14-3477 TCGA-14-4157 TCGA-15-1444 TCGA-15-1447 
        7.63         0.39         3.75         3.39        50.53        53.19 
TCGA-15-1449 TCGA-16-0846 TCGA-16-0850 TCGA-16-0861 TCGA-16-1055 TCGA-16-1063 
        5.49         3.91        16.31         4.27         9.90        13.97 
TCGA-16-1460 TCGA-19-0957 TCGA-19-0960 TCGA-19-0963 TCGA-19-1387 TCGA-19-1390 
        6.41        21.86         8.61        14.27         5.95        25.38 
TCGA-19-1392 TCGA-19-1788 TCGA-19-2620 TCGA-19-2624 TCGA-19-5955 TCGA-19-5956 
        3.48         3.65         4.87         0.16         1.78         6.51 
TCGA-26-1442 TCGA-26-1799 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-6174 
       31.33         9.37        14.86         5.49         8.84         2.30 
TCGA-27-1837 TCGA-27-2518 TCGA-27-2521 TCGA-28-1746 TCGA-28-1747 TCGA-28-1752 
       14.04        24.72        10.39         0.20         2.53         8.45 
TCGA-28-1756 TCGA-28-2502 TCGA-28-2506 TCGA-28-2514 TCGA-28-5207 TCGA-28-5219 
        2.83         0.66         6.74         5.26         9.04         8.52 
TCGA-28-6450 TCGA-32-1970 TCGA-32-1973 TCGA-32-1976 TCGA-32-1980 TCGA-32-1991 
        5.42        15.35        21.07         0.49         1.18        16.93 
TCGA-32-2495 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-41-2573 TCGA-41-5651 
       14.99        22.78        21.14         3.68         8.94        11.54 
TCGA-41-6646 TCGA-74-6584 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6192 
        7.73         7.46         2.53        10.78        16.67         3.29 
TCGA-76-6662 TCGA-76-6663 
        9.24         7.69 

$subtype3
TCGA-02-0004 TCGA-02-0006 TCGA-02-0015 TCGA-02-0021 TCGA-02-0023 TCGA-02-0025 
       11.34        18.35        20.61        77.62        20.12        42.74 
TCGA-02-0033 TCGA-02-0034 TCGA-02-0037 TCGA-02-0039 TCGA-02-0047 TCGA-02-0051 
        2.83        14.14         3.58        10.52        14.70        15.06 
TCGA-02-0055 TCGA-02-0059 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 TCGA-02-0071 
        2.50         9.57        19.73        26.43        25.05         5.49 
TCGA-02-0085 TCGA-02-0086 TCGA-02-0106 TCGA-02-0107 TCGA-02-0111 TCGA-02-0113 
       51.29         8.81        11.67        17.65        23.15        92.61 
TCGA-02-0266 TCGA-02-0285 TCGA-02-0290 TCGA-02-0317 TCGA-02-0332 TCGA-02-0333 
       17.69        13.87        15.95        12.23        25.71         4.37 
TCGA-02-0337 TCGA-02-0456 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 TCGA-06-0127 
       25.12         3.35        16.18         0.26         4.04         3.55 
TCGA-06-0130 TCGA-06-0133 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 TCGA-06-0143 
       10.52        14.07        10.75         0.20         9.21        11.74 
TCGA-06-0149 TCGA-06-0150 TCGA-06-0151 TCGA-06-0152 TCGA-06-0154 TCGA-06-0155 
        7.82        19.46        46.59        11.80        12.79         8.65 
TCGA-06-0156 TCGA-06-0164 TCGA-06-0168 TCGA-06-0169 TCGA-06-0175 TCGA-06-0176 
        5.39        56.84        19.04         3.12         2.73        90.97 
TCGA-06-0188 TCGA-06-0189 TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0210 
       28.47        14.93        10.29         4.67         2.60         4.96 
TCGA-06-0219 TCGA-06-0238 TCGA-06-0394 TCGA-06-0397 TCGA-06-0409 TCGA-06-0412 
        0.33        11.80        10.29         5.52        70.52         8.05 
TCGA-06-0644 TCGA-06-0645 TCGA-06-0650 TCGA-06-0743 TCGA-06-0744 TCGA-06-0745 
       12.33         3.22        23.57        22.29        19.53         5.36 
TCGA-06-0747 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-0881 TCGA-06-1084 
        2.70        46.19         5.65         7.17         5.85         7.43 
TCGA-06-1086 TCGA-06-1800 TCGA-06-1802 TCGA-06-1804 TCGA-06-2563 TCGA-06-2566 
        6.35        26.79         7.86        13.58        30.64         5.98 
TCGA-06-2569 TCGA-06-5410 TCGA-06-5412 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 
        0.43         3.52         4.54         8.81         8.98         8.55 
TCGA-06-5418 TCGA-06-5856 TCGA-06-6693 TCGA-06-6694 TCGA-08-0246 TCGA-08-0346 
        2.73         3.75         0.49         7.36         3.91         4.34 
TCGA-08-0353 TCGA-08-0354 TCGA-08-0356 TCGA-08-0358 TCGA-08-0373 TCGA-08-0386 
        6.41        15.06        14.70        19.50         4.41        15.72 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0511 TCGA-08-0512 TCGA-08-0521 TCGA-08-0522 
        0.30         0.56         7.73        11.77         4.80        18.25 
TCGA-12-0616 TCGA-12-0620 TCGA-12-0654 TCGA-12-0656 TCGA-12-0703 TCGA-12-0776 
       14.40         5.95         7.17        65.88        18.08         9.11 
TCGA-12-0778 TCGA-12-0822 TCGA-12-0828 TCGA-12-0829 TCGA-12-1092 TCGA-12-1093 
       14.83        23.51         8.91        20.58        21.63        11.97 
TCGA-12-1094 TCGA-12-1096 TCGA-12-1602 TCGA-12-3644 TCGA-12-3651 TCGA-12-5295 
       11.38         9.11         6.38        59.41        11.77        13.08 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0789 TCGA-14-0862 TCGA-14-0866 TCGA-14-0871 
       11.97         0.95        11.24         2.89        26.33        28.90 
TCGA-14-1034 TCGA-14-1037 TCGA-14-1396 TCGA-14-1401 TCGA-14-1402 TCGA-14-1794 
       15.95        19.30         1.12         3.75        32.02         0.99 
TCGA-14-2555 TCGA-16-1060 TCGA-19-0964 TCGA-19-1385 TCGA-19-1389 TCGA-19-1790 
        7.96         3.65         3.39        10.75         4.64         5.03 
TCGA-19-2621 TCGA-19-2625 TCGA-19-4068 TCGA-19-5947 TCGA-19-5952 TCGA-26-1439 
        1.08         4.08         4.47         6.64        18.64        13.87 
TCGA-26-1443 TCGA-26-5132 TCGA-26-6173 TCGA-27-1830 TCGA-27-1831 TCGA-27-1832 
        7.10         9.40         7.92         4.80        16.57         9.86 
TCGA-27-1836 TCGA-27-1838 TCGA-27-2519 TCGA-27-2524 TCGA-27-2527 TCGA-27-2528 
       30.05        11.51        10.39         7.59        14.40        15.75 
TCGA-28-1745 TCGA-28-1751 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-1760 
       11.31         7.59         1.18         1.51         0.13         4.70 
TCGA-28-2513 TCGA-28-5211 TCGA-28-5213 TCGA-28-5214 TCGA-28-5216 TCGA-28-5218 
        7.30        11.77         9.80        14.20        13.64         4.21 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1982 TCGA-32-1986 TCGA-32-2491 TCGA-32-2494 
        0.10        15.85         4.67        12.69        12.23        20.78 
TCGA-32-2615 TCGA-32-2632 TCGA-32-2638 TCGA-32-4719 TCGA-41-2571 TCGA-41-2572 
       15.95         8.84        21.17        10.85         0.85        13.35 
TCGA-74-6581 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-6280 TCGA-76-6661 
        8.22         4.54        17.59         3.09        11.38         0.23 
TCGA-76-6664 TCGA-81-5910 
        7.76         1.61 

subtype1 subtype2 subtype3 
    0.07     0.10     0.10 
subtype1 subtype2 subtype3 
  127.56   108.82    92.61 
subtype1 subtype2 subtype3 
   10.34     9.44    10.29 
[1] "0.1 - 127.6 (10.3)" "0.1 - 108.8 (9.4)"  "0.1 - 92.6 (10.3)" 
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[313] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[331] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[355] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[373] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[379] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[409] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[415] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[433] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[451] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[475] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[493] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[499] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[505] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[511] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[517] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[523] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[529] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[535] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[541] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[547] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[553] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[559] "subtype1" "subtype1"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[313] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[331] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[355] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[373] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[379] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[409] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[415] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[433] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[451] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[475] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[493] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[499] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[505] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[511] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[517] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[523] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[529] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[535] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[541] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[547] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[553] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[559] "subtype1" "subtype1"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [19] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype1"
 [25] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
 [31] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [43] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
 [49] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
 [55] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype2"
 [61] "subtype1" "subtype3" "subtype1" "subtype1" "subtype2" "subtype3"
 [67] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
 [79] "subtype2" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [85] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
 [97] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[109] "subtype1" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[115] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[121] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[127] "subtype3" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[139] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
[145] "subtype2" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[157] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[163] "subtype2" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[169] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype3"
[175] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype2"
[187] "subtype2" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[193] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
[199] "subtype2" "subtype1" "subtype3" "subtype2" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype1" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[217] "subtype3" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[223] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype1"
[229] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[235] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[241] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[247] "subtype1" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[253] "subtype3" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[265] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[277] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[283] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[289] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype3"
[295] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
[301] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[307] "subtype1" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[313] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[319] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
[325] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[331] "subtype2" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[337] "subtype1" "subtype3" "subtype1" "subtype2" "subtype2" "subtype1"
[343] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[349] "subtype3" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[355] "subtype1" "subtype2" "subtype1" "subtype1" "subtype2" "subtype2"
[361] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[367] "subtype1" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
[373] "subtype2" "subtype2" "subtype2" "subtype1" "subtype2" "subtype1"
[379] "subtype2" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[385] "subtype2" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[391] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[397] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[403] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[409] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
[415] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype1"
[421] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[427] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype1"
[433] "subtype1" "subtype3" "subtype1" "subtype2" "subtype3" "subtype2"
[439] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[445] "subtype3" "subtype2" "subtype3" "subtype3" "subtype3" "subtype1"
[451] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
[457] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
[463] "subtype3" "subtype3" "subtype2" "subtype2" "subtype1" "subtype1"
[469] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype3"
[475] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype2"
[481] "subtype1" "subtype2" "subtype1" "subtype1" "subtype3" "subtype3"
[487] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype1"
[493] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype3"
[499] "subtype1" "subtype2" "subtype3" "subtype3" "subtype1" "subtype2"
[505] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
[511] "subtype2" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[517] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[523] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[529] "subtype2" "subtype1" "subtype1" "subtype1" "subtype1" "subtype3"
[535] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[541] "subtype1" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[547] "subtype1" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[553] "subtype1" "subtype3" "subtype2" "subtype2" "subtype3" "subtype3"
[559] "subtype1" "subtype1"
D4V2, continuous
D4V3, binary
          cls
clus         0   1
  subtype1  83  95
  subtype2  70 118
  subtype3  65 129
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   83   95
  subtype2   70  118
  subtype3   65  129
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       83       70       65
  MALE         95      118      129
D4V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             0                   9
  subtype2                             5                   9
  subtype3                             3                   2
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             169
  subtype2                             174
  subtype3                             189
D4V5, multiclass
D4V6, binary
          cls
clus         0   1
  subtype1 125  53
  subtype2 131  57
  subtype3 133  61
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1  125   53
  subtype2  131   57
  subtype3  133   61
     clus
vv    subtype1 subtype2 subtype3
  NO       125      131      133
  YES       53       57       61

Clustering(5) Variable = CN_CNMF
D5V1, survival
          sevent
clus2        0   1
  subtype1  25 124
  subtype2  42 177
  subtype3  41 144
subtype1 subtype2 subtype3 
     149      219      185 
subtype1 subtype2 subtype3 
     124      177      144 
$subtype1
TCGA-02-0001 TCGA-02-0007 TCGA-02-0024 TCGA-02-0039 TCGA-02-0048 TCGA-02-0051 
        9.14        23.18        53.06        10.52         3.19        15.06 
TCGA-02-0074 TCGA-02-0086 TCGA-02-0099 TCGA-02-0106 TCGA-02-0113 TCGA-02-0266 
       10.19         8.81         3.48        11.67        92.61        17.69 
TCGA-02-0281 TCGA-02-0324 TCGA-02-0330 TCGA-02-0440 TCGA-02-0446 TCGA-02-2466 
        3.98         7.69        15.91        11.34         9.24        16.80 
TCGA-06-0138 TCGA-06-0149 TCGA-06-0152 TCGA-06-0162 TCGA-06-0166 TCGA-06-0168 
       22.16         7.82        11.80         2.56         5.29        19.04 
TCGA-06-0171 TCGA-06-0173 TCGA-06-0177 TCGA-06-0182 TCGA-06-0184 TCGA-06-0188 
       13.02         0.23         1.97         2.53        40.37        28.47 
TCGA-06-0192 TCGA-06-0195 TCGA-06-0206 TCGA-06-0209 TCGA-06-0214 TCGA-06-0216 
       18.28         7.04         6.44         3.88        12.43        22.49 
TCGA-06-0219 TCGA-06-0221 TCGA-06-0238 TCGA-06-0241 TCGA-06-0402 TCGA-06-0409 
        0.33        18.02        11.80        14.96         0.26        70.52 
TCGA-06-0410 TCGA-06-0412 TCGA-06-0644 TCGA-06-0649 TCGA-06-0686 TCGA-06-0875 
        4.67         8.05        12.33         2.04         9.37        43.46 
TCGA-06-1087 TCGA-06-2557 TCGA-06-2558 TCGA-06-2561 TCGA-06-5408 TCGA-06-5856 
        3.58         1.08         0.76         9.27        11.21         3.75 
TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-08-0245 TCGA-08-0349 TCGA-08-0520 
        4.54         5.36         7.36        34.75         7.59        10.72 
TCGA-12-0615 TCGA-12-0616 TCGA-12-0619 TCGA-12-0654 TCGA-12-0662 TCGA-12-0691 
       14.01        14.40        10.39         7.17        38.17         6.08 
TCGA-12-0692 TCGA-12-0772 TCGA-12-0821 TCGA-12-0826 TCGA-12-1089 TCGA-12-1091 
        2.63        53.10        10.62        27.78         5.82        30.54 
TCGA-12-1096 TCGA-12-1098 TCGA-12-1099 TCGA-12-1598 TCGA-12-1602 TCGA-12-3644 
        9.11         3.98         3.39         9.44         6.38        59.41 
TCGA-12-3646 TCGA-12-3653 TCGA-12-5295 TCGA-14-0736 TCGA-14-0783 TCGA-14-0813 
       43.20        11.74        13.08        15.09         6.18         1.35 
TCGA-14-0817 TCGA-14-0865 TCGA-14-0867 TCGA-14-0871 TCGA-14-1396 TCGA-14-1451 
        5.39        16.50         2.04        28.90         1.12        23.11 
TCGA-14-1453 TCGA-14-1454 TCGA-14-1455 TCGA-14-1823 TCGA-14-1825 TCGA-14-3477 
        1.15        30.15         0.92        17.82         7.63         3.75 
TCGA-15-0742 TCGA-15-1449 TCGA-16-0848 TCGA-16-1045 TCGA-19-0957 TCGA-19-1392 
        9.86         5.49         9.93        29.00        21.86         3.48 
TCGA-19-1787 TCGA-19-1791 TCGA-19-2623 TCGA-19-2625 TCGA-19-2629 TCGA-19-5960 
       12.66         0.13         7.53         4.08        16.47         5.42 
TCGA-26-1438 TCGA-26-1439 TCGA-26-1440 TCGA-26-5132 TCGA-26-5134 TCGA-26-5135 
       10.03        13.87         9.73         9.40         5.49         8.84 
TCGA-26-5136 TCGA-27-1830 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-2519 
        1.22         4.80         9.86        33.14        21.30        10.39 
TCGA-28-1746 TCGA-28-1750 TCGA-28-2506 TCGA-28-2509 TCGA-28-5207 TCGA-28-5215 
        0.20         8.32         6.74         4.77         9.04         7.79 
TCGA-28-5216 TCGA-28-5218 TCGA-28-5219 TCGA-28-5220 TCGA-32-1976 TCGA-32-2615 
       13.64         4.21         8.52        10.49         0.49        15.95 
TCGA-32-2632 TCGA-32-2634 TCGA-32-4208 TCGA-32-4210 TCGA-32-4211 TCGA-32-5222 
        8.84        22.78        21.14         3.68        12.59        10.62 
TCGA-41-2571 TCGA-41-2573 TCGA-41-2575 TCGA-41-3392 TCGA-41-5651 TCGA-74-6584 
        0.85         8.94         9.53         0.99        11.54         7.46 
TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6285 TCGA-76-6286 
        3.65         2.53        10.78         8.32        20.94 

$subtype2
TCGA-02-0003 TCGA-02-0009 TCGA-02-0016 TCGA-02-0021 TCGA-02-0023 TCGA-02-0037 
        4.73        10.59        55.86        77.62        20.12         3.58 
TCGA-02-0038 TCGA-02-0043 TCGA-02-0046 TCGA-02-0064 TCGA-02-0068 TCGA-02-0070 
       10.72        18.28         6.84        19.73        26.43        25.05 
TCGA-02-0071 TCGA-02-0089 TCGA-02-0102 TCGA-02-0116 TCGA-02-0260 TCGA-02-0269 
        5.49        16.93        26.99        48.95        16.90        10.75 
TCGA-02-0285 TCGA-02-0289 TCGA-02-0290 TCGA-02-0317 TCGA-02-0333 TCGA-02-0422 
       13.87        14.20        15.95        12.23         4.37        14.50 
TCGA-02-0430 TCGA-02-0451 TCGA-02-2485 TCGA-02-2486 TCGA-06-0122 TCGA-06-0124 
       10.55        16.18        15.42        16.18         0.26         4.04 
TCGA-06-0125 TCGA-06-0126 TCGA-06-0133 TCGA-06-0137 TCGA-06-0145 TCGA-06-0148 
       47.31         0.10        14.07        23.05         2.33         9.80 
TCGA-06-0150 TCGA-06-0151 TCGA-06-0154 TCGA-06-0155 TCGA-06-0157 TCGA-06-0158 
       19.46        46.59        12.79         8.65         3.19         5.46 
TCGA-06-0169 TCGA-06-0174 TCGA-06-0175 TCGA-06-0185 TCGA-06-0187 TCGA-06-0208 
        3.12         2.20         2.73        73.84        26.33         5.46 
TCGA-06-0211 TCGA-06-0237 TCGA-06-0645 TCGA-06-0646 TCGA-06-0648 TCGA-06-0743 
       11.84        10.32         3.22         4.47         9.63        22.29 
TCGA-06-0744 TCGA-06-0745 TCGA-06-0747 TCGA-06-0750 TCGA-06-0876 TCGA-06-0877 
       19.53         5.36         2.70         0.92        46.19         5.65 
TCGA-06-0878 TCGA-06-0879 TCGA-06-1800 TCGA-06-1801 TCGA-06-1802 TCGA-06-1804 
        7.17        22.98        26.79         8.65         7.86        13.58 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-2565 TCGA-06-2567 TCGA-06-5413 
        2.83        30.64         5.95         6.81         4.37         8.81 
TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 TCGA-06-6388 TCGA-06-6693 TCGA-06-6695 
        8.98         8.55         2.73         3.91         0.49         8.28 
TCGA-06-6699 TCGA-08-0244 TCGA-08-0345 TCGA-08-0348 TCGA-08-0352 TCGA-08-0353 
        1.55        22.68         1.74        10.39         1.28         6.41 
TCGA-08-0354 TCGA-08-0355 TCGA-08-0356 TCGA-08-0357 TCGA-08-0358 TCGA-08-0359 
       15.06        22.52        14.70        35.64        19.50         0.95 
TCGA-08-0375 TCGA-08-0386 TCGA-08-0389 TCGA-08-0510 TCGA-08-0514 TCGA-08-0518 
        9.17        15.72         3.19         3.48         8.52         1.28 
TCGA-08-0525 TCGA-08-0529 TCGA-08-0531 TCGA-12-0618 TCGA-12-0620 TCGA-12-0656 
       15.98        17.29         5.52         1.61         5.95        65.88 
TCGA-12-0657 TCGA-12-0670 TCGA-12-0688 TCGA-12-0703 TCGA-12-0707 TCGA-12-0769 
        0.10        25.97        24.13        18.08        28.37        12.43 
TCGA-12-0778 TCGA-12-0780 TCGA-12-0819 TCGA-12-0820 TCGA-12-0828 TCGA-12-1094 
       14.83        14.27        24.76        18.48         8.91        11.38 
TCGA-12-1095 TCGA-12-1097 TCGA-12-1599 TCGA-12-1600 TCGA-12-3648 TCGA-12-3649 
       15.85        14.53        25.28        13.61        25.78        11.54 
TCGA-12-3650 TCGA-12-3651 TCGA-12-3652 TCGA-12-5299 TCGA-12-5301 TCGA-14-0786 
       10.95        11.77        34.52         3.22         2.01        23.05 
TCGA-14-0787 TCGA-14-0789 TCGA-14-0790 TCGA-14-0866 TCGA-14-1034 TCGA-14-1395 
        2.24        11.24        13.74        26.33        15.95         1.38 
TCGA-14-1401 TCGA-14-1402 TCGA-14-1450 TCGA-14-1452 TCGA-14-1459 TCGA-14-1795 
        3.75        32.02        58.78         7.10        12.43         1.94 
TCGA-14-1827 TCGA-14-1829 TCGA-14-2554 TCGA-14-2555 TCGA-15-1446 TCGA-16-1047 
        5.88         7.13        17.49         7.96        19.10         0.82 
TCGA-16-1055 TCGA-16-1056 TCGA-16-1060 TCGA-16-1062 TCGA-16-1063 TCGA-19-0962 
        9.90        13.35         3.65        18.28        13.97         0.43 
TCGA-19-0963 TCGA-19-0964 TCGA-19-1386 TCGA-19-1387 TCGA-19-1786 TCGA-19-1789 
       14.27         3.39         9.07         5.95         7.13         3.25 
TCGA-19-2619 TCGA-19-2620 TCGA-19-2621 TCGA-19-2624 TCGA-19-2631 TCGA-19-5950 
        9.67         4.87         1.08         0.16         7.00        11.28 
TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5959 TCGA-26-1443 TCGA-26-1799 
        8.02        18.64         7.96         5.29         7.10         9.37 
TCGA-26-5139 TCGA-27-1831 TCGA-27-1833 TCGA-27-1836 TCGA-27-1837 TCGA-27-1838 
        1.58        16.57        18.25        30.05        14.04        11.51 
TCGA-27-2518 TCGA-27-2523 TCGA-27-2524 TCGA-27-2526 TCGA-27-2528 TCGA-28-1747 
       24.72        16.08         7.59         2.86        15.75         2.53 
TCGA-28-1749 TCGA-28-1752 TCGA-28-1753 TCGA-28-1755 TCGA-28-1757 TCGA-28-2514 
        9.17         8.45         1.18         1.51         0.13         5.26 
TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-28-5214 TCGA-28-6450 TCGA-32-1970 
        3.91        15.55        14.53        14.20         5.42        15.35 
TCGA-32-1977 TCGA-32-1978 TCGA-32-1979 TCGA-32-1982 TCGA-32-1991 TCGA-32-2494 
        0.10        15.85        19.50         4.67        16.93        20.78 
TCGA-32-2495 TCGA-32-2638 TCGA-32-4213 TCGA-32-4719 TCGA-41-2572 TCGA-41-3393 
       14.99        21.17        19.82        10.85        13.35         4.44 
TCGA-74-6573 TCGA-74-6577 TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 
        3.45         4.31        14.33         8.22         4.77         4.54 
TCGA-76-4931 TCGA-76-6191 TCGA-76-6280 TCGA-76-6656 TCGA-76-6657 TCGA-76-6661 
        9.14        16.67        11.38         4.83         5.03         0.23 
TCGA-81-5910 TCGA-81-5911 TCGA-87-5896 
        1.61        17.69         0.07 

$subtype3
TCGA-02-0006 TCGA-02-0010 TCGA-02-0011 TCGA-02-0014 TCGA-02-0015 TCGA-02-0025 
       18.35        35.41        20.71        82.55        20.61        42.74 
TCGA-02-0026 TCGA-02-0027 TCGA-02-0028 TCGA-02-0033 TCGA-02-0034 TCGA-02-0047 
       24.59        10.36        90.58         2.83        14.14        14.70 
TCGA-02-0052 TCGA-02-0054 TCGA-02-0055 TCGA-02-0057 TCGA-02-0058 TCGA-02-0059 
       12.59         6.54         2.50        19.86         8.35         9.57 
TCGA-02-0060 TCGA-02-0069 TCGA-02-0075 TCGA-02-0079 TCGA-02-0080 TCGA-02-0083 
        6.02        28.70        20.84        27.22        89.72        22.72 
TCGA-02-0084 TCGA-02-0085 TCGA-02-0087 TCGA-02-0104 TCGA-02-0107 TCGA-02-0111 
        0.23        51.29        57.76        65.00        17.65        23.15 
TCGA-02-0114 TCGA-02-0115 TCGA-02-0258 TCGA-02-0271 TCGA-02-0321 TCGA-02-0325 
       99.95        15.65        16.54        14.47         9.86        10.62 
TCGA-02-0326 TCGA-02-0332 TCGA-02-0337 TCGA-02-0338 TCGA-02-0339 TCGA-02-0432 
        0.16        25.71        25.12        10.59        12.39        47.11 
TCGA-02-0456 TCGA-02-2470 TCGA-02-2483 TCGA-06-0119 TCGA-06-0127 TCGA-06-0128 
        3.35        12.92        15.29         2.70         3.55        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0132 TCGA-06-0139 TCGA-06-0140 TCGA-06-0141 
       32.48        10.52        18.74        10.75         0.20         9.21 
TCGA-06-0142 TCGA-06-0143 TCGA-06-0146 TCGA-06-0147 TCGA-06-0159 TCGA-06-0160 
        2.20        11.74        20.09        16.70         9.44        11.80 
TCGA-06-0164 TCGA-06-0165 TCGA-06-0176 TCGA-06-0178 TCGA-06-0179 TCGA-06-0189 
       56.84        10.65        90.97        53.98        19.00        14.93 
TCGA-06-0190 TCGA-06-0194 TCGA-06-0197 TCGA-06-0201 TCGA-06-0210 TCGA-06-0213 
       10.29         4.67         2.60         0.39         4.96         0.20 
TCGA-06-0240 TCGA-06-0394 TCGA-06-0397 TCGA-06-0413 TCGA-06-0414 TCGA-06-0650 
       20.42        10.29         5.52         0.16        35.01        23.57 
TCGA-06-0749 TCGA-06-0881 TCGA-06-0882 TCGA-06-0939 TCGA-06-1084 TCGA-06-1086 
        2.14         5.85         5.42        20.94         7.43         6.35 
TCGA-06-1805 TCGA-06-2559 TCGA-06-2566 TCGA-06-2569 TCGA-06-2570 TCGA-06-5410 
       33.90         4.90         5.98         0.43        31.50         3.52 
TCGA-06-5411 TCGA-06-5412 TCGA-06-5416 TCGA-06-5858 TCGA-06-6389 TCGA-06-6391 
        8.35         4.54         6.71         6.12         7.76         1.45 
TCGA-06-6697 TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-08-0246 TCGA-08-0344 
       12.85         4.77         4.77         4.96         3.91       108.82 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0380 TCGA-08-0390 
        4.34        13.78         3.39        53.79        10.85        10.59 
TCGA-08-0392 TCGA-08-0509 TCGA-08-0512 TCGA-08-0516 TCGA-08-0517 TCGA-08-0521 
        0.30         0.56        11.77        18.44        58.19         4.80 
TCGA-08-0524 TCGA-12-0773 TCGA-12-0775 TCGA-12-0776 TCGA-12-0818 TCGA-12-0822 
        6.51        43.10         5.49         9.11        91.73        23.51 
TCGA-12-0827 TCGA-12-0829 TCGA-12-1088 TCGA-12-1090 TCGA-12-1092 TCGA-12-1093 
       38.76        20.58       127.56         6.21        21.63        11.97 
TCGA-14-0740 TCGA-14-0781 TCGA-14-0812 TCGA-14-0862 TCGA-14-1037 TCGA-14-1043 
       11.97         0.95         3.25         2.89        19.30         0.79 
TCGA-14-1456 TCGA-14-1458 TCGA-14-1794 TCGA-14-1821 TCGA-14-4157 TCGA-15-1444 
       40.93         6.12         0.99        17.75         3.39        50.53 
TCGA-15-1447 TCGA-16-0846 TCGA-16-0849 TCGA-16-0850 TCGA-16-0861 TCGA-16-1460 
       53.19         3.91        26.07        16.31         4.27         6.41 
TCGA-19-0955 TCGA-19-0960 TCGA-19-1385 TCGA-19-1388 TCGA-19-1389 TCGA-19-1390 
       11.77         8.61        10.75        12.95         4.64        25.38 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5953 TCGA-19-5955 TCGA-19-5956 TCGA-19-5958 
        7.04         6.64         4.73         1.78         6.51         5.39 
TCGA-26-1442 TCGA-26-5133 TCGA-26-6173 TCGA-26-6174 TCGA-27-2521 TCGA-27-2527 
       31.33        14.86         7.92         2.30        10.39        14.40 
TCGA-28-1751 TCGA-28-1756 TCGA-28-2502 TCGA-28-2513 TCGA-28-5211 TCGA-28-5213 
        7.59         2.83         0.66         7.30        11.77         9.80 
TCGA-32-1973 TCGA-32-1980 TCGA-32-1986 TCGA-32-1987 TCGA-32-2491 TCGA-32-2616 
       21.07         1.18        12.69        14.83        12.23         7.33 
TCGA-41-3915 TCGA-41-4097 TCGA-41-6646 TCGA-74-6575 TCGA-76-4928 TCGA-76-6192 
       11.84         0.20         7.73        20.88         3.09         3.29 
TCGA-76-6193 TCGA-76-6282 TCGA-76-6662 TCGA-76-6663 TCGA-76-6664 
        2.70        17.06         9.24         7.69         7.76 

subtype1 subtype2 subtype3 
    0.13     0.07     0.16 
subtype1 subtype2 subtype3 
   92.61    77.62   127.56 
subtype1 subtype2 subtype3 
    9.27    10.39    10.59 
[1] "0.1 - 92.6 (9.3)"   "0.1 - 77.6 (10.4)"  "0.2 - 127.6 (10.6)"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[379] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[397] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[409] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[433] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[439] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[457] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[463] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[475] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[487] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[493] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[499] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[505] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[511] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[517] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[523] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[529] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[535] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[541] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[547] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[553] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[379] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[397] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[409] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[433] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[439] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[457] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[463] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[475] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[487] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[493] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[499] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[505] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[511] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[517] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[523] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[529] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[535] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[541] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[547] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[553] "subtype2"
  [1] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype3"
  [7] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype2"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
 [19] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
 [25] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [31] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [49] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
 [55] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype3"
 [61] "subtype2" "subtype1" "subtype2" "subtype3" "subtype1" "subtype2"
 [67] "subtype2" "subtype2" "subtype2" "subtype3" "subtype1" "subtype3"
 [73] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype1" "subtype1"
 [85] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype2" "subtype3" "subtype2" "subtype2" "subtype2" "subtype2"
 [97] "subtype3" "subtype3" "subtype3" "subtype3" "subtype3" "subtype2"
[103] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype3"
[109] "subtype3" "subtype2" "subtype3" "subtype3" "subtype2" "subtype1"
[115] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
[127] "subtype1" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
[133] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[139] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype1"
[151] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[157] "subtype1" "subtype1" "subtype1" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype1"
[169] "subtype1" "subtype3" "subtype3" "subtype1" "subtype2" "subtype2"
[175] "subtype2" "subtype1" "subtype3" "subtype1" "subtype2" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype2"
[187] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[199] "subtype2" "subtype3" "subtype1" "subtype1" "subtype3" "subtype1"
[205] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[211] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
[217] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[223] "subtype3" "subtype1" "subtype2" "subtype3" "subtype1" "subtype3"
[229] "subtype2" "subtype1" "subtype2" "subtype3" "subtype3" "subtype2"
[235] "subtype3" "subtype3" "subtype2" "subtype1" "subtype3" "subtype3"
[241] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[247] "subtype3" "subtype2" "subtype2" "subtype2" "subtype2" "subtype2"
[253] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype2"
[259] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype3"
[265] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[271] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[277] "subtype2" "subtype1" "subtype2" "subtype1" "subtype2" "subtype2"
[283] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[289] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype3"
[295] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[301] "subtype3" "subtype1" "subtype3" "subtype2" "subtype3" "subtype3"
[307] "subtype1" "subtype3" "subtype1" "subtype3" "subtype3" "subtype2"
[313] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype1"
[319] "subtype2" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[325] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype1"
[331] "subtype2" "subtype2" "subtype1" "subtype3" "subtype3" "subtype1"
[337] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
[343] "subtype1" "subtype3" "subtype1" "subtype2" "subtype1" "subtype1"
[349] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype2"
[355] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[361] "subtype1" "subtype3" "subtype3" "subtype2" "subtype3" "subtype2"
[367] "subtype3" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
[373] "subtype2" "subtype1" "subtype3" "subtype1" "subtype3" "subtype2"
[379] "subtype3" "subtype1" "subtype3" "subtype1" "subtype3" "subtype3"
[385] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[391] "subtype2" "subtype2" "subtype3" "subtype3" "subtype1" "subtype3"
[397] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
[403] "subtype3" "subtype3" "subtype3" "subtype1" "subtype2" "subtype1"
[409] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype1"
[415] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[421] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[427] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[433] "subtype1" "subtype3" "subtype2" "subtype2" "subtype1" "subtype3"
[439] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[445] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype1"
[451] "subtype2" "subtype2" "subtype2" "subtype2" "subtype1" "subtype3"
[457] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype1"
[463] "subtype2" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
[469] "subtype2" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
[475] "subtype3" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
[481] "subtype3" "subtype3" "subtype2" "subtype1" "subtype1" "subtype1"
[487] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[493] "subtype2" "subtype2" "subtype2" "subtype3" "subtype2" "subtype3"
[499] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[505] "subtype3" "subtype1" "subtype1" "subtype2" "subtype1" "subtype1"
[511] "subtype1" "subtype2" "subtype2" "subtype1" "subtype1" "subtype2"
[517] "subtype1" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[523] "subtype1" "subtype3" "subtype2" "subtype3" "subtype2" "subtype2"
[529] "subtype2" "subtype1" "subtype2" "subtype2" "subtype3" "subtype1"
[535] "subtype2" "subtype1" "subtype1" "subtype2" "subtype3" "subtype3"
[541] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype2"
[547] "subtype2" "subtype3" "subtype3" "subtype3" "subtype2" "subtype2"
[553] "subtype2"
D5V2, continuous
D5V3, binary
          cls
clus         0   1
  subtype1  64  85
  subtype2  81 138
  subtype3  73 112
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   64   85
  subtype2   81  138
  subtype3   73  112
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       64       81       73
  MALE         85      138      112
D5V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             0                   4
  subtype2                             2                   5
  subtype3                             8                   9
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                             145
  subtype2                             212
  subtype3                             168
D5V5, multiclass
D5V6, binary
          cls
clus         0   1
  subtype1  98  51
  subtype2 154  65
  subtype3 130  55
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   98   51
  subtype2  154   65
  subtype3  130   55
     clus
vv    subtype1 subtype2 subtype3
  NO        98      154      130
  YES       51       65       55

Clustering(6) Variable = METHLYATION_CNMF
D6V1, survival
          sevent
clus2       0  1
  subtype1 15 17
  subtype2 18 26
  subtype3 17 15
subtype1 subtype2 subtype3 
      32       44       32 
subtype1 subtype2 subtype3 
      17       26       15 
$subtype1
TCGA-06-0650 TCGA-06-5410 TCGA-06-5412 TCGA-06-5858 TCGA-06-6390 TCGA-06-6697 
       23.57         3.52         4.54         6.12         5.36        12.85 
TCGA-06-6698 TCGA-06-6700 TCGA-14-0781 TCGA-14-0862 TCGA-14-1043 TCGA-14-1450 
        4.77         4.77         0.95         2.89         0.79        58.78 
TCGA-19-4065 TCGA-19-5947 TCGA-19-5950 TCGA-19-5953 TCGA-19-5955 TCGA-19-5958 
        7.04         6.64        11.28         4.73         1.78         5.39 
TCGA-26-6173 TCGA-28-5211 TCGA-28-5213 TCGA-28-5218 TCGA-32-1980 TCGA-41-6646 
        7.92        11.77         9.80         4.21         1.18         7.73 
TCGA-74-6575 TCGA-76-4928 TCGA-76-6192 TCGA-76-6282 TCGA-76-6657 TCGA-76-6662 
       20.88         3.09         3.29        17.06         5.03         9.24 
TCGA-76-6663 TCGA-81-5911 
        7.69        17.69 

$subtype2
TCGA-06-1804 TCGA-06-5408 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5418 
       13.58        11.21         8.81         8.98         8.55         2.73 
TCGA-06-5856 TCGA-06-6388 TCGA-06-6693 TCGA-06-6695 TCGA-06-6699 TCGA-12-5295 
        3.75         3.91         0.49         8.28         1.55        13.08 
TCGA-12-5299 TCGA-14-1395 TCGA-19-5951 TCGA-19-5952 TCGA-19-5954 TCGA-19-5959 
        3.22         1.38         8.02        18.64         7.96         5.29 
TCGA-19-5960 TCGA-26-5132 TCGA-26-5139 TCGA-28-5204 TCGA-28-5207 TCGA-28-5208 
        5.42         9.40         1.58         3.91         9.04        15.55 
TCGA-28-5209 TCGA-28-5214 TCGA-28-6450 TCGA-32-1979 TCGA-32-5222 TCGA-74-6573 
       14.53        14.20         5.42        19.50        10.62         3.45 
TCGA-74-6578 TCGA-74-6581 TCGA-76-4925 TCGA-76-4926 TCGA-76-4927 TCGA-76-4931 
       14.33         8.22         4.77         4.54        17.59         9.14 
TCGA-76-4932 TCGA-76-6280 TCGA-76-6656 TCGA-76-6661 TCGA-76-6664 TCGA-81-5910 
       47.93        11.38         4.83         0.23         7.76         1.61 
TCGA-87-5896 TCGA-OX-A56R 
        0.07         5.88 

$subtype3
TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 TCGA-06-5859 TCGA-06-6389 TCGA-06-6391 
        8.35         6.71         5.10         4.54         7.76         1.45 
TCGA-06-6694 TCGA-06-6701 TCGA-12-5301 TCGA-14-0740 TCGA-15-1444 TCGA-19-5956 
        7.36         4.96         2.01        11.97        50.53         6.51 
TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-26-5136 TCGA-26-6174 
       31.33        14.86         5.49         8.84         1.22         2.30 
TCGA-28-5215 TCGA-28-5216 TCGA-28-5219 TCGA-28-5220 TCGA-41-5651 TCGA-74-6577 
        7.79        13.64         8.52        10.49        11.54         4.31 
TCGA-74-6584 TCGA-76-4929 TCGA-76-4934 TCGA-76-4935 TCGA-76-6191 TCGA-76-6193 
        7.46         3.65         2.53        10.78        16.67         2.70 
TCGA-76-6285 TCGA-76-6286 
        8.32        20.94 

subtype1 subtype2 subtype3 
    0.79     0.07     1.22 
subtype1 subtype2 subtype3 
   58.78    47.93    50.53 
subtype1 subtype2 subtype3 
   5.755    7.990    7.610 
[1] "0.8 - 58.8 (5.8)" "0.1 - 47.9 (8.0)" "1.2 - 50.5 (7.6)"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
  [1] "subtype1" "subtype2" "subtype2" "subtype1" "subtype3" "subtype1"
  [7] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype2"
 [13] "subtype2" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
 [19] "subtype3" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
 [25] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [31] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype1"
 [37] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
 [43] "subtype1" "subtype2" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype2" "subtype3" "subtype2" "subtype3" "subtype3" "subtype3"
 [55] "subtype3" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
 [61] "subtype2" "subtype2" "subtype1" "subtype1" "subtype2" "subtype3"
 [67] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [73] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [79] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype2"
 [85] "subtype2" "subtype1" "subtype3" "subtype2" "subtype2" "subtype3"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
 [97] "subtype3" "subtype3" "subtype2" "subtype1" "subtype2" "subtype1"
[103] "subtype1" "subtype2" "subtype2" "subtype1" "subtype2" "subtype2"
D6V2, continuous
D6V3, binary
          cls
clus        0  1
  subtype1 12 20
  subtype2 18 26
  subtype3 17 15
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   12   20
  subtype2   18   26
  subtype3   17   15
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       12       18       17
  MALE         20       26       15
D6V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             0                   0
  subtype2                             1                   1
  subtype3                             1                   0
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                              32
  subtype2                              42
  subtype3                              31
D6V5, multiclass
D6V6, binary
          cls
clus        0  1
  subtype1 25  7
  subtype2 29 15
  subtype3 24  8
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25    7
  subtype2   29   15
  subtype3   24    8
     clus
vv    subtype1 subtype2 subtype3
  NO        25       29       24
  YES        7       15        8

Clustering(7) Variable = RPPA_CNMF
D7V1, survival
          sevent
clus2       0  1
  subtype1 11 46
  subtype2 20 40
  subtype3 15 29
  subtype4 14 35
subtype1 subtype2 subtype3 subtype4 
      57       60       44       49 
subtype1 subtype2 subtype3 subtype4 
      46       40       29       35 
$subtype1
TCGA-02-0003 TCGA-02-0004 TCGA-02-0068 TCGA-02-0069 TCGA-02-0116 TCGA-02-2470 
        4.73        11.34        26.43        28.70        48.95        12.92 
TCGA-06-0128 TCGA-06-0130 TCGA-06-0154 TCGA-06-0155 TCGA-06-0171 TCGA-06-0189 
       22.72        10.52        12.79         8.65        13.02        14.93 
TCGA-06-0238 TCGA-06-0650 TCGA-06-0882 TCGA-06-1084 TCGA-06-1802 TCGA-06-2557 
       11.80        23.57         5.42         7.43         7.86         1.08 
TCGA-06-2567 TCGA-06-5410 TCGA-06-5412 TCGA-06-5416 TCGA-06-6697 TCGA-08-0245 
        4.37         3.52         4.54         6.71        12.85        34.75 
TCGA-08-0348 TCGA-08-0352 TCGA-08-0353 TCGA-08-0373 TCGA-14-0871 TCGA-15-1447 
       10.39         1.28         6.41         4.41        28.90        53.19 
TCGA-19-1389 TCGA-19-1790 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5952 
        4.64         5.03         4.08         7.00         6.64        18.64 
TCGA-19-5953 TCGA-26-5133 TCGA-26-5134 TCGA-27-1832 TCGA-27-2528 TCGA-28-1750 
        4.73        14.86         5.49         9.86        15.75         8.32 
TCGA-28-1753 TCGA-28-1757 TCGA-28-5214 TCGA-32-1982 TCGA-32-1986 TCGA-32-4211 
        1.18         0.13        14.20         4.67        12.69        12.59 
TCGA-41-3393 TCGA-41-3915 TCGA-41-6646 TCGA-74-6573 TCGA-76-4926 TCGA-76-4927 
        4.44        11.84         7.73         3.45         4.54        17.59 
TCGA-76-4928 TCGA-76-6282 TCGA-76-6662 
        3.09        17.06         9.24 

$subtype2
TCGA-02-0011 TCGA-02-0014 TCGA-06-0129 TCGA-06-0875 TCGA-06-1804 TCGA-06-1805 
       20.71        82.55        32.48        43.46        13.58        33.90 
TCGA-06-2558 TCGA-06-2564 TCGA-06-2566 TCGA-06-2570 TCGA-06-5411 TCGA-06-5417 
        0.76         5.95         5.98        31.50         8.35         5.10 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6391 TCGA-06-6695 TCGA-06-6700 TCGA-06-6701 
        3.91         7.76         1.45         8.28         4.77         4.96 
TCGA-08-0344 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0359 TCGA-08-0380 
      108.82        13.78         3.39        53.79         0.95        10.85 
TCGA-08-0385 TCGA-08-0389 TCGA-12-0691 TCGA-12-1597 TCGA-12-3649 TCGA-12-3651 
        1.02         3.19         6.08        14.04        11.54        11.77 
TCGA-14-0813 TCGA-15-1449 TCGA-16-0846 TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 
        1.35         5.49         3.91         6.41        21.86         0.43 
TCGA-19-1390 TCGA-19-1786 TCGA-19-1788 TCGA-19-2620 TCGA-19-5956 TCGA-19-5958 
       25.38         7.13         3.65         4.87         6.51         5.39 
TCGA-19-5960 TCGA-26-1442 TCGA-26-6174 TCGA-27-1834 TCGA-27-1836 TCGA-27-2518 
        5.42        31.33         2.30        33.14        30.05        24.72 
TCGA-28-1746 TCGA-32-1976 TCGA-32-4210 TCGA-32-5222 TCGA-41-2573 TCGA-41-2575 
        0.20         0.49         3.68        10.62         8.94         9.53 
TCGA-41-5651 TCGA-74-6581 TCGA-76-6193 TCGA-76-6285 TCGA-76-6657 TCGA-76-6663 
       11.54         8.22         2.70         8.32         5.03         7.69 

$subtype3
TCGA-02-2485 TCGA-06-0126 TCGA-06-0876 TCGA-06-0877 TCGA-06-0878 TCGA-06-2563 
       15.42         0.10        46.19         5.65         7.17        30.64 
TCGA-06-2565 TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 TCGA-06-6693 
        6.81         8.81         8.98         8.55         3.75         0.49 
TCGA-06-6699 TCGA-08-0349 TCGA-08-0354 TCGA-08-0357 TCGA-08-0358 TCGA-08-0375 
        1.55         7.59        15.06        35.64        19.50         9.17 
TCGA-08-0386 TCGA-12-3646 TCGA-12-3650 TCGA-12-3652 TCGA-12-3653 TCGA-12-5295 
       15.72        43.20        10.95        34.52        11.74        13.08 
TCGA-14-1823 TCGA-15-1446 TCGA-19-1386 TCGA-19-1789 TCGA-19-1791 TCGA-19-5950 
       17.82        19.10         9.07         3.25         0.13        11.28 
TCGA-19-5951 TCGA-19-5959 TCGA-26-1440 TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 
        8.02         5.29         9.73         9.40        16.57        18.25 
TCGA-28-1747 TCGA-28-1752 TCGA-32-1970 TCGA-32-1978 TCGA-32-1991 TCGA-41-3392 
        2.53         8.45        15.35        15.85        16.93         0.99 
TCGA-76-4931 TCGA-76-6656 
        9.14         4.83 

$subtype4
TCGA-06-0125 TCGA-06-0156 TCGA-06-0644 TCGA-06-0879 TCGA-06-0939 TCGA-06-1086 
       47.31         5.39        12.33        22.98        20.94         6.35 
TCGA-06-1087 TCGA-06-1800 TCGA-06-2559 TCGA-06-2562 TCGA-06-5408 TCGA-06-5418 
        3.58        26.79         4.90         2.83        11.21         2.73 
TCGA-06-5858 TCGA-06-5859 TCGA-06-6390 TCGA-06-6694 TCGA-06-6698 TCGA-08-0345 
        6.12         4.54         5.36         7.36         4.77         1.74 
TCGA-08-0346 TCGA-08-0355 TCGA-08-0356 TCGA-08-0360 TCGA-08-0390 TCGA-08-0392 
        4.34        22.52        14.70        11.57        10.59         0.30 
TCGA-12-0692 TCGA-12-1598 TCGA-12-1599 TCGA-12-5301 TCGA-14-0862 TCGA-19-1392 
        2.63         9.44        25.28         2.01         2.89         3.48 
TCGA-19-2619 TCGA-19-4068 TCGA-19-5954 TCGA-19-5955 TCGA-26-6173 TCGA-27-1830 
        9.67         4.47         7.96         1.78         7.92         4.80 
TCGA-28-1760 TCGA-28-5208 TCGA-32-1987 TCGA-41-4097 TCGA-74-6575 TCGA-74-6577 
        4.70        15.55        14.83         0.20        20.88         4.31 
TCGA-74-6578 TCGA-74-6584 TCGA-76-4929 TCGA-76-4932 TCGA-76-6192 TCGA-76-6664 
       14.33         7.46         3.65        47.93         3.29         7.76 
TCGA-81-5910 
        1.61 

subtype1 subtype2 subtype3 subtype4 
    0.13     0.20     0.10     0.20 
subtype1 subtype2 subtype3 subtype4 
   53.19   108.82    46.19    47.93 
subtype1 subtype2 subtype3 subtype4 
   8.650    7.410    9.285    6.120 
[1] "0.1 - 53.2 (8.7)"  "0.2 - 108.8 (7.4)" "0.1 - 46.2 (9.3)" 
[4] "0.2 - 47.9 (6.1)" 
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
  [1] "subtype1" "subtype1" "subtype2" "subtype2" "subtype1" "subtype1"
  [7] "subtype1" "subtype1" "subtype3" "subtype4" "subtype3" "subtype1"
 [13] "subtype2" "subtype1" "subtype1" "subtype1" "subtype4" "subtype1"
 [19] "subtype1" "subtype1" "subtype4" "subtype1" "subtype2" "subtype3"
 [25] "subtype3" "subtype3" "subtype4" "subtype1" "subtype4" "subtype1"
 [31] "subtype4" "subtype4" "subtype4" "subtype1" "subtype2" "subtype2"
 [37] "subtype1" "subtype2" "subtype4" "subtype4" "subtype3" "subtype2"
 [43] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype1"
 [49] "subtype2" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
 [55] "subtype2" "subtype4" "subtype3" "subtype4" "subtype4" "subtype2"
 [61] "subtype2" "subtype4" "subtype2" "subtype3" "subtype4" "subtype2"
 [67] "subtype1" "subtype4" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype4" "subtype4" "subtype2" "subtype1" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype1" "subtype3" "subtype4"
 [85] "subtype4" "subtype3" "subtype3" "subtype2" "subtype4" "subtype1"
 [91] "subtype3" "subtype2" "subtype2" "subtype3" "subtype2" "subtype4"
 [97] "subtype4" "subtype2" "subtype4" "subtype2" "subtype4" "subtype4"
[103] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype3"
[109] "subtype3" "subtype4" "subtype2" "subtype4" "subtype1" "subtype3"
[115] "subtype3" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[121] "subtype2" "subtype3" "subtype1" "subtype2" "subtype4" "subtype2"
[127] "subtype2" "subtype3" "subtype1" "subtype3" "subtype4" "subtype2"
[133] "subtype1" "subtype1" "subtype4" "subtype1" "subtype3" "subtype3"
[139] "subtype1" "subtype1" "subtype4" "subtype4" "subtype2" "subtype2"
[145] "subtype3" "subtype2" "subtype3" "subtype2" "subtype3" "subtype1"
[151] "subtype1" "subtype4" "subtype2" "subtype4" "subtype3" "subtype1"
[157] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[163] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype4"
[169] "subtype4" "subtype1" "subtype3" "subtype2" "subtype3" "subtype1"
[175] "subtype1" "subtype4" "subtype3" "subtype2" "subtype1" "subtype2"
[181] "subtype2" "subtype2" "subtype3" "subtype1" "subtype1" "subtype4"
[187] "subtype2" "subtype1" "subtype1" "subtype4" "subtype4" "subtype4"
[193] "subtype2" "subtype4" "subtype1" "subtype1" "subtype1" "subtype4"
[199] "subtype3" "subtype4" "subtype4" "subtype2" "subtype1" "subtype2"
[205] "subtype3" "subtype2" "subtype1" "subtype2" "subtype4" "subtype4"
D7V2, continuous
D7V3, binary
          cls
clus        0  1
  subtype1 17 40
  subtype2 26 34
  subtype3 18 26
  subtype4 24 25
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   17   40
  subtype2   26   34
  subtype3   18   26
  subtype4   24   25
        clus
vv       subtype1 subtype2 subtype3 subtype4
  FEMALE       17       26       18       24
  MALE         40       34       26       25
D7V4, continuous
          vv
clus       TREATED PRIMARY GBM UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                   2                              55
  subtype2                   0                              60
  subtype3                   0                              44
  subtype4                   1                              48
D7V5, multiclass
                                 clus
vv                                subtype1 subtype2 subtype3 subtype4
  TREATED PRIMARY GBM                    2        0        0        1
  UNTREATED PRIMARY (DE NOVO) GBM       55       60       44       48
D7V6, binary
          cls
clus        0  1
  subtype1 42 15
  subtype2 44 16
  subtype3 37  7
  subtype4 33 16
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   42   15
  subtype2   44   16
  subtype3   37    7
  subtype4   33   16
     clus
vv    subtype1 subtype2 subtype3 subtype4
  NO        42       44       37       33
  YES       15       16        7       16

Clustering(8) Variable = RPPA_CHIERARCHICAL
D8V1, survival
          sevent
clus2       0  1
  subtype1 19 45
  subtype2  6 29
  subtype3 35 76
subtype1 subtype2 subtype3 
      64       35      111 
subtype1 subtype2 subtype3 
      45       29       76 
$subtype1
TCGA-02-2485 TCGA-06-0126 TCGA-06-0154 TCGA-06-0155 TCGA-06-0876 TCGA-06-0877 
       15.42         0.10        12.79         8.65        46.19         5.65 
TCGA-06-0878 TCGA-06-2557 TCGA-06-2563 TCGA-06-2565 TCGA-06-2567 TCGA-06-5408 
        7.17         1.08        30.64         6.81         4.37        11.21 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5415 TCGA-06-5856 TCGA-06-6693 TCGA-06-6699 
        8.81         8.98         8.55         3.75         0.49         1.55 
TCGA-08-0349 TCGA-08-0352 TCGA-08-0353 TCGA-08-0354 TCGA-08-0355 TCGA-08-0357 
        7.59         1.28         6.41        15.06        22.52        35.64 
TCGA-08-0358 TCGA-08-0375 TCGA-08-0386 TCGA-12-3646 TCGA-12-3650 TCGA-12-3652 
       19.50         9.17        15.72        43.20        10.95        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-14-1823 TCGA-15-1446 TCGA-19-1386 TCGA-19-1786 
       11.74        13.08        17.82        19.10         9.07         7.13 
TCGA-19-1789 TCGA-19-1791 TCGA-19-2620 TCGA-19-5950 TCGA-19-5951 TCGA-19-5952 
        3.25         0.13         4.87        11.28         8.02        18.64 
TCGA-19-5959 TCGA-26-1440 TCGA-26-5132 TCGA-27-1831 TCGA-27-1833 TCGA-27-2528 
        5.29         9.73         9.40        16.57        18.25        15.75 
TCGA-28-1747 TCGA-28-1752 TCGA-28-1757 TCGA-28-5214 TCGA-32-1970 TCGA-32-1978 
        2.53         8.45         0.13        14.20        15.35        15.85 
TCGA-32-1982 TCGA-32-1991 TCGA-32-5222 TCGA-41-3392 TCGA-41-3393 TCGA-76-4931 
        4.67        16.93        10.62         0.99         4.44         9.14 
TCGA-76-4932 TCGA-76-6282 TCGA-76-6656 TCGA-76-6664 
       47.93        17.06         4.83         7.76 

$subtype2
TCGA-02-0003 TCGA-02-0004 TCGA-02-0069 TCGA-02-2470 TCGA-06-0189 TCGA-06-0238 
        4.73        11.34        28.70        12.92        14.93        11.80 
TCGA-06-0644 TCGA-06-0650 TCGA-06-0882 TCGA-06-1084 TCGA-06-1802 TCGA-06-5410 
       12.33        23.57         5.42         7.43         7.86         3.52 
TCGA-06-5412 TCGA-06-6697 TCGA-08-0348 TCGA-08-0373 TCGA-08-0392 TCGA-15-1447 
        4.54        12.85        10.39         4.41         0.30        53.19 
TCGA-19-1790 TCGA-19-2625 TCGA-19-2631 TCGA-19-5947 TCGA-19-5953 TCGA-27-1832 
        5.03         4.08         7.00         6.64         4.73         9.86 
TCGA-27-2518 TCGA-28-1750 TCGA-28-1753 TCGA-32-1986 TCGA-32-4211 TCGA-41-6646 
       24.72         8.32         1.18        12.69        12.59         7.73 
TCGA-74-6573 TCGA-76-4926 TCGA-76-4927 TCGA-76-4928 TCGA-76-6662 
        3.45         4.54        17.59         3.09         9.24 

$subtype3
TCGA-02-0011 TCGA-02-0014 TCGA-02-0068 TCGA-02-0116 TCGA-06-0125 TCGA-06-0128 
       20.71        82.55        26.43        48.95        47.31        22.72 
TCGA-06-0129 TCGA-06-0130 TCGA-06-0156 TCGA-06-0171 TCGA-06-0875 TCGA-06-0879 
       32.48        10.52         5.39        13.02        43.46        22.98 
TCGA-06-0939 TCGA-06-1086 TCGA-06-1087 TCGA-06-1800 TCGA-06-1804 TCGA-06-1805 
       20.94         6.35         3.58        26.79        13.58        33.90 
TCGA-06-2558 TCGA-06-2559 TCGA-06-2562 TCGA-06-2564 TCGA-06-2566 TCGA-06-2570 
        0.76         4.90         2.83         5.95         5.98        31.50 
TCGA-06-5411 TCGA-06-5416 TCGA-06-5417 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 
        8.35         6.71         5.10         2.73         6.12         4.54 
TCGA-06-6388 TCGA-06-6389 TCGA-06-6390 TCGA-06-6391 TCGA-06-6694 TCGA-06-6695 
        3.91         7.76         5.36         1.45         7.36         8.28 
TCGA-06-6698 TCGA-06-6700 TCGA-06-6701 TCGA-08-0245 TCGA-08-0344 TCGA-08-0345 
        4.77         4.77         4.96        34.75       108.82         1.74 
TCGA-08-0346 TCGA-08-0347 TCGA-08-0350 TCGA-08-0351 TCGA-08-0356 TCGA-08-0359 
        4.34        13.78         3.39        53.79        14.70         0.95 
TCGA-08-0360 TCGA-08-0380 TCGA-08-0385 TCGA-08-0389 TCGA-08-0390 TCGA-12-0691 
       11.57        10.85         1.02         3.19        10.59         6.08 
TCGA-12-0692 TCGA-12-1597 TCGA-12-1598 TCGA-12-1599 TCGA-12-3649 TCGA-12-3651 
        2.63        14.04         9.44        25.28        11.54        11.77 
TCGA-12-5301 TCGA-14-0813 TCGA-14-0862 TCGA-14-0871 TCGA-15-1449 TCGA-16-0846 
        2.01         1.35         2.89        28.90         5.49         3.91 
TCGA-16-1460 TCGA-19-0957 TCGA-19-0962 TCGA-19-1389 TCGA-19-1390 TCGA-19-1392 
        6.41        21.86         0.43         4.64        25.38         3.48 
TCGA-19-1788 TCGA-19-2619 TCGA-19-4068 TCGA-19-5954 TCGA-19-5955 TCGA-19-5956 
        3.65         9.67         4.47         7.96         1.78         6.51 
TCGA-19-5958 TCGA-19-5960 TCGA-26-1442 TCGA-26-5133 TCGA-26-5134 TCGA-26-6173 
        5.39         5.42        31.33        14.86         5.49         7.92 
TCGA-26-6174 TCGA-27-1830 TCGA-27-1834 TCGA-27-1836 TCGA-28-1746 TCGA-28-1760 
        2.30         4.80        33.14        30.05         0.20         4.70 
TCGA-28-5208 TCGA-32-1976 TCGA-32-1987 TCGA-32-4210 TCGA-41-2573 TCGA-41-2575 
       15.55         0.49        14.83         3.68         8.94         9.53 
TCGA-41-3915 TCGA-41-4097 TCGA-41-5651 TCGA-74-6575 TCGA-74-6577 TCGA-74-6578 
       11.84         0.20        11.54        20.88         4.31        14.33 
TCGA-74-6581 TCGA-74-6584 TCGA-76-4929 TCGA-76-6192 TCGA-76-6193 TCGA-76-6285 
        8.22         7.46         3.65         3.29         2.70         8.32 
TCGA-76-6657 TCGA-76-6663 TCGA-81-5910 
        5.03         7.69         1.61 

subtype1 subtype2 subtype3 
     0.1      0.3      0.2 
subtype1 subtype2 subtype3 
   47.93    53.19   108.82 
subtype1 subtype2 subtype3 
   9.155    7.860    6.710 
[1] "0.1 - 47.9 (9.2)"  "0.3 - 53.2 (7.9)"  "0.2 - 108.8 (6.7)"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
  [1] "subtype2" "subtype2" "subtype3" "subtype3" "subtype3" "subtype2"
  [7] "subtype3" "subtype2" "subtype1" "subtype3" "subtype1" "subtype3"
 [13] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
 [19] "subtype2" "subtype2" "subtype2" "subtype2" "subtype3" "subtype1"
 [25] "subtype1" "subtype1" "subtype3" "subtype2" "subtype3" "subtype2"
 [31] "subtype3" "subtype3" "subtype3" "subtype2" "subtype3" "subtype3"
 [37] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [43] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [49] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype3"
 [55] "subtype3" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [61] "subtype3" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [67] "subtype2" "subtype3" "subtype1" "subtype3" "subtype3" "subtype3"
 [73] "subtype3" "subtype3" "subtype3" "subtype3" "subtype2" "subtype1"
 [79] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
 [85] "subtype3" "subtype1" "subtype1" "subtype3" "subtype3" "subtype2"
 [91] "subtype1" "subtype3" "subtype3" "subtype1" "subtype3" "subtype3"
 [97] "subtype2" "subtype3" "subtype3" "subtype3" "subtype3" "subtype3"
[103] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype1"
[109] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
[115] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[121] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[127] "subtype3" "subtype1" "subtype2" "subtype1" "subtype3" "subtype1"
[133] "subtype2" "subtype2" "subtype3" "subtype2" "subtype1" "subtype1"
[139] "subtype1" "subtype2" "subtype3" "subtype3" "subtype3" "subtype3"
[145] "subtype1" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
[151] "subtype3" "subtype3" "subtype3" "subtype3" "subtype1" "subtype2"
[157] "subtype1" "subtype3" "subtype3" "subtype2" "subtype1" "subtype3"
[163] "subtype1" "subtype2" "subtype1" "subtype2" "subtype1" "subtype3"
[169] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
[175] "subtype2" "subtype3" "subtype1" "subtype3" "subtype2" "subtype1"
[181] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[187] "subtype3" "subtype2" "subtype2" "subtype3" "subtype3" "subtype3"
[193] "subtype3" "subtype3" "subtype2" "subtype2" "subtype2" "subtype3"
[199] "subtype1" "subtype1" "subtype3" "subtype3" "subtype1" "subtype3"
[205] "subtype1" "subtype3" "subtype2" "subtype3" "subtype1" "subtype3"
D8V2, continuous
D8V3, binary
          cls
clus        0  1
  subtype1 25 39
  subtype2 12 23
  subtype3 48 63
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   25   39
  subtype2   12   23
  subtype3   48   63
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       25       12       48
  MALE         39       23       63
D8V4, continuous
          vv
clus       TREATED PRIMARY GBM UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                   1                              63
  subtype2                   1                              34
  subtype3                   1                             110
D8V5, multiclass
                                 clus
vv                                subtype1 subtype2 subtype3
  TREATED PRIMARY GBM                    1        1        1
  UNTREATED PRIMARY (DE NOVO) GBM       63       34      110
D8V6, binary
          cls
clus        0  1
  subtype1 51 13
  subtype2 26  9
  subtype3 79 32
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   51   13
  subtype2   26    9
  subtype3   79   32
     clus
vv    subtype1 subtype2 subtype3
  NO        51       26       79
  YES       13        9       32

Clustering(9) Variable = MRNASEQ_CNMF
D9V1, survival
          sevent
clus2       0  1
  subtype1 14 33
  subtype2 18 52
  subtype3  7 28
subtype1 subtype2 subtype3 
      47       70       35 
subtype1 subtype2 subtype3 
      33       52       28 
$subtype1
TCGA-02-0047 TCGA-02-2483 TCGA-06-0129 TCGA-06-0138 TCGA-06-0156 TCGA-06-0157 
       14.70        15.29        32.48        22.16         5.39         3.19 
TCGA-06-0174 TCGA-06-0178 TCGA-06-0238 TCGA-06-0646 TCGA-06-0686 TCGA-06-0745 
        2.20        53.98        11.80         4.47         9.37         5.36 
TCGA-06-2557 TCGA-06-2558 TCGA-06-2559 TCGA-06-2569 TCGA-06-2570 TCGA-06-5408 
        1.08         0.76         4.90         0.43        31.50        11.21 
TCGA-06-5413 TCGA-06-5416 TCGA-06-5417 TCGA-06-5856 TCGA-06-5859 TCGA-12-0616 
        8.81         6.71         5.10         3.75         4.54        14.40 
TCGA-12-0618 TCGA-12-0821 TCGA-12-1597 TCGA-12-3650 TCGA-14-1825 TCGA-15-1444 
        1.61        10.62        14.04        10.95         7.63        50.53 
TCGA-19-1390 TCGA-19-2624 TCGA-19-2629 TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 
       25.38         0.16        16.47        14.86         5.49         8.84 
TCGA-27-1830 TCGA-27-2519 TCGA-27-2521 TCGA-27-2523 TCGA-28-1753 TCGA-28-5215 
        4.80        10.39        10.39        16.08         1.18         7.79 
TCGA-28-5216 TCGA-32-2634 TCGA-41-2571 TCGA-41-5651 TCGA-76-4929 
       13.64        22.78         0.85        11.54         3.65 

$subtype2
TCGA-02-0055 TCGA-02-2486 TCGA-06-0125 TCGA-06-0130 TCGA-06-0141 TCGA-06-0184 
        2.50        16.18        47.31        10.52         9.21        40.37 
TCGA-06-0187 TCGA-06-0190 TCGA-06-0210 TCGA-06-0644 TCGA-06-0645 TCGA-06-0649 
       26.33        10.29         4.96        12.33         3.22         2.04 
TCGA-06-0743 TCGA-06-0750 TCGA-06-0878 TCGA-06-2565 TCGA-06-2567 TCGA-06-5410 
       22.29         0.92         7.17         6.81         4.37         3.52 
TCGA-06-5412 TCGA-06-5414 TCGA-06-5418 TCGA-06-5858 TCGA-12-0619 TCGA-12-3652 
        4.54         8.98         2.73         6.12        10.39        34.52 
TCGA-12-3653 TCGA-12-5295 TCGA-12-5299 TCGA-14-0781 TCGA-14-0789 TCGA-14-0790 
       11.74        13.08         3.22         0.95        11.24        13.74 
TCGA-14-1034 TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-19-1787 
       15.95        17.82         7.13        17.49        29.00        12.66 
TCGA-19-2619 TCGA-19-2625 TCGA-19-4065 TCGA-26-5132 TCGA-26-5136 TCGA-26-5139 
        9.67         4.08         7.04         9.40         1.22         1.58 
TCGA-27-1831 TCGA-27-1832 TCGA-27-1834 TCGA-27-1835 TCGA-27-2524 TCGA-27-2526 
       16.57         9.86        33.14        21.30         7.59         2.86 
TCGA-27-2528 TCGA-28-2499 TCGA-28-2509 TCGA-28-2513 TCGA-28-5204 TCGA-28-5208 
       15.75         3.09         4.77         7.30         3.91        15.55 
TCGA-28-5209 TCGA-28-5213 TCGA-28-5218 TCGA-28-5220 TCGA-32-2615 TCGA-32-2616 
       14.53         9.80         4.21        10.49        15.95         7.33 
TCGA-32-2632 TCGA-32-2638 TCGA-32-4213 TCGA-32-5222 TCGA-41-2572 TCGA-41-3915 
        8.84        21.17        19.82        10.62        13.35        11.84 
TCGA-76-4925 TCGA-76-4927 TCGA-76-4928 TCGA-76-4932 
        4.77        17.59         3.09        47.93 

$subtype3
TCGA-02-2485 TCGA-06-0132 TCGA-06-0158 TCGA-06-0168 TCGA-06-0211 TCGA-06-0219 
       15.42        18.74         5.46        19.04        11.84         0.33 
TCGA-06-0744 TCGA-06-0747 TCGA-06-0749 TCGA-06-0882 TCGA-06-1804 TCGA-06-2561 
       19.53         2.70         2.14         5.42        13.58         9.27 
TCGA-06-2562 TCGA-06-2563 TCGA-06-2564 TCGA-06-5411 TCGA-06-5415 TCGA-08-0386 
        2.83        30.64         5.95         8.35         8.55        15.72 
TCGA-14-0787 TCGA-14-0817 TCGA-15-0742 TCGA-16-0846 TCGA-19-2620 TCGA-19-5960 
        2.24         5.39         9.86         3.91         4.87         5.42 
TCGA-26-1442 TCGA-27-1837 TCGA-28-1747 TCGA-28-2514 TCGA-28-5207 TCGA-32-1970 
       31.33        14.04         2.53         5.26         9.04        15.35 
TCGA-32-1980 TCGA-32-1982 TCGA-41-4097 TCGA-76-4926 TCGA-76-4931 
        1.18         4.67         0.20         4.54         9.14 

subtype1 subtype2 subtype3 
    0.16     0.92     0.20 
subtype1 subtype2 subtype3 
   53.98    47.93    31.33 
subtype1 subtype2 subtype3 
    8.84     9.83     5.95 
[1] "0.2 - 54.0 (8.8)" "0.9 - 47.9 (9.8)" "0.2 - 31.3 (6.0)"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[151] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[151] "subtype3" "subtype2"
  [1] "subtype1" "subtype2" "subtype1" "subtype3" "subtype2" "subtype2"
  [7] "subtype1" "subtype2" "subtype3" "subtype1" "subtype2" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype1" "subtype1" "subtype2"
 [19] "subtype2" "subtype2" "subtype2" "subtype3" "subtype3" "subtype1"
 [25] "subtype2" "subtype2" "subtype1" "subtype2" "subtype1" "subtype2"
 [31] "subtype3" "subtype1" "subtype3" "subtype3" "subtype2" "subtype2"
 [37] "subtype3" "subtype3" "subtype1" "subtype1" "subtype1" "subtype3"
 [43] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [49] "subtype1" "subtype1" "subtype2" "subtype3" "subtype2" "subtype1"
 [55] "subtype2" "subtype3" "subtype1" "subtype1" "subtype2" "subtype1"
 [61] "subtype2" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [67] "subtype1" "subtype1" "subtype1" "subtype2" "subtype2" "subtype2"
 [73] "subtype2" "subtype2" "subtype3" "subtype2" "subtype2" "subtype3"
 [79] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
 [85] "subtype1" "subtype3" "subtype2" "subtype1" "subtype2" "subtype2"
 [91] "subtype3" "subtype1" "subtype2" "subtype1" "subtype2" "subtype3"
 [97] "subtype3" "subtype2" "subtype1" "subtype1" "subtype1" "subtype2"
[103] "subtype2" "subtype1" "subtype2" "subtype2" "subtype2" "subtype2"
[109] "subtype3" "subtype1" "subtype1" "subtype1" "subtype2" "subtype2"
[115] "subtype2" "subtype3" "subtype1" "subtype2" "subtype2" "subtype2"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype2"
[127] "subtype1" "subtype1" "subtype2" "subtype2" "subtype3" "subtype3"
[133] "subtype3" "subtype2" "subtype2" "subtype2" "subtype1" "subtype2"
[139] "subtype2" "subtype2" "subtype1" "subtype2" "subtype2" "subtype3"
[145] "subtype1" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[151] "subtype3" "subtype2"
D9V2, continuous
D9V3, binary
          cls
clus        0  1
  subtype1 14 33
  subtype2 31 39
  subtype3  8 27
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   14   33
  subtype2   31   39
  subtype3    8   27
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       14       31        8
  MALE         33       39       27
D9V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             1                   0
  subtype2                             0                   1
  subtype3                             0                   0
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                              46
  subtype2                              69
  subtype3                              35
D9V5, multiclass
D9V6, binary
          cls
clus        0  1
  subtype1 32 15
  subtype2 48 22
  subtype3 22 13
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   32   15
  subtype2   48   22
  subtype3   22   13
     clus
vv    subtype1 subtype2 subtype3
  NO        32       48       22
  YES       15       22       13

Clustering(10) Variable = MRNASEQ_CHIERARCHICAL
D10V1, survival
          sevent
clus2       0  1
  subtype1 21 48
  subtype2  3 19
  subtype3 15 46
subtype1 subtype2 subtype3 
      69       22       61 
subtype1 subtype2 subtype3 
      48       19       46 
$subtype1
TCGA-02-0055 TCGA-02-2485 TCGA-02-2486 TCGA-06-0130 TCGA-06-0141 TCGA-06-0156 
        2.50        15.42        16.18        10.52         9.21         5.39 
TCGA-06-0157 TCGA-06-0184 TCGA-06-0187 TCGA-06-0190 TCGA-06-0210 TCGA-06-0644 
        3.19        40.37        26.33        10.29         4.96        12.33 
TCGA-06-0645 TCGA-06-0646 TCGA-06-0649 TCGA-06-0743 TCGA-06-0750 TCGA-06-0878 
        3.22         4.47         2.04        22.29         0.92         7.17 
TCGA-06-1804 TCGA-06-2567 TCGA-06-2569 TCGA-06-5408 TCGA-06-5410 TCGA-06-5412 
       13.58         4.37         0.43        11.21         3.52         4.54 
TCGA-06-5413 TCGA-06-5414 TCGA-06-5418 TCGA-06-5858 TCGA-06-5859 TCGA-08-0386 
        8.81         8.98         2.73         6.12         4.54        15.72 
TCGA-12-0619 TCGA-12-5295 TCGA-14-0781 TCGA-14-0789 TCGA-14-0790 TCGA-14-1034 
       10.39        13.08         0.95        11.24        13.74        15.95 
TCGA-14-1823 TCGA-14-1829 TCGA-14-2554 TCGA-16-1045 TCGA-19-1787 TCGA-19-2625 
       17.82         7.13        17.49        29.00        12.66         4.08 
TCGA-19-4065 TCGA-26-5132 TCGA-26-5136 TCGA-26-5139 TCGA-27-1830 TCGA-27-1831 
        7.04         9.40         1.22         1.58         4.80        16.57 
TCGA-27-1832 TCGA-27-1834 TCGA-27-2519 TCGA-27-2524 TCGA-27-2526 TCGA-28-1753 
        9.86        33.14        10.39         7.59         2.86         1.18 
TCGA-28-2499 TCGA-28-2509 TCGA-28-2513 TCGA-28-5213 TCGA-28-5218 TCGA-28-5220 
        3.09         4.77         7.30         9.80         4.21        10.49 
TCGA-32-2615 TCGA-32-2616 TCGA-32-2632 TCGA-32-4213 TCGA-41-3915 TCGA-76-4925 
       15.95         7.33         8.84        19.82        11.84         4.77 
TCGA-76-4927 TCGA-76-4928 TCGA-76-4929 
       17.59         3.09         3.65 

$subtype2
TCGA-06-0125 TCGA-06-0747 TCGA-06-2557 TCGA-06-2562 TCGA-06-2565 TCGA-12-3652 
       47.31         2.70         1.08         2.83         6.81        34.52 
TCGA-12-3653 TCGA-12-5299 TCGA-14-0787 TCGA-14-0817 TCGA-15-0742 TCGA-19-2619 
       11.74         3.22         2.24         5.39         9.86         9.67 
TCGA-27-1835 TCGA-27-2528 TCGA-28-5204 TCGA-28-5208 TCGA-28-5209 TCGA-32-1982 
       21.30        15.75         3.91        15.55        14.53         4.67 
TCGA-32-2638 TCGA-32-5222 TCGA-41-2572 TCGA-76-4932 
       21.17        10.62        13.35        47.93 

$subtype3
TCGA-02-0047 TCGA-02-2483 TCGA-06-0129 TCGA-06-0132 TCGA-06-0138 TCGA-06-0158 
       14.70        15.29        32.48        18.74        22.16         5.46 
TCGA-06-0168 TCGA-06-0174 TCGA-06-0178 TCGA-06-0211 TCGA-06-0219 TCGA-06-0238 
       19.04         2.20        53.98        11.84         0.33        11.80 
TCGA-06-0686 TCGA-06-0744 TCGA-06-0745 TCGA-06-0749 TCGA-06-0882 TCGA-06-2558 
        9.37        19.53         5.36         2.14         5.42         0.76 
TCGA-06-2559 TCGA-06-2561 TCGA-06-2563 TCGA-06-2564 TCGA-06-2570 TCGA-06-5411 
        4.90         9.27        30.64         5.95        31.50         8.35 
TCGA-06-5415 TCGA-06-5416 TCGA-06-5417 TCGA-06-5856 TCGA-12-0616 TCGA-12-0618 
        8.55         6.71         5.10         3.75        14.40         1.61 
TCGA-12-0821 TCGA-12-1597 TCGA-12-3650 TCGA-14-1825 TCGA-15-1444 TCGA-16-0846 
       10.62        14.04        10.95         7.63        50.53         3.91 
TCGA-19-1390 TCGA-19-2620 TCGA-19-2624 TCGA-19-2629 TCGA-19-5960 TCGA-26-1442 
       25.38         4.87         0.16        16.47         5.42        31.33 
TCGA-26-5133 TCGA-26-5134 TCGA-26-5135 TCGA-27-1837 TCGA-27-2521 TCGA-27-2523 
       14.86         5.49         8.84        14.04        10.39        16.08 
TCGA-28-1747 TCGA-28-2514 TCGA-28-5207 TCGA-28-5215 TCGA-28-5216 TCGA-32-1970 
        2.53         5.26         9.04         7.79        13.64        15.35 
TCGA-32-1980 TCGA-32-2634 TCGA-41-2571 TCGA-41-4097 TCGA-41-5651 TCGA-76-4926 
        1.18        22.78         0.85         0.20        11.54         4.54 
TCGA-76-4931 
        9.14 

subtype1 subtype2 subtype3 
    0.43     1.08     0.16 
subtype1 subtype2 subtype3 
   40.37    47.93    53.98 
subtype1 subtype2 subtype3 
    8.81    10.24     9.14 
[1] "0.4 - 40.4 (8.8)"  "1.1 - 47.9 (10.2)" "0.2 - 54.0 (9.1)" 
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype2"
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype2"
  [1] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
  [7] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
 [13] "subtype1" "subtype3" "subtype3" "subtype3" "subtype3" "subtype1"
 [19] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype3"
 [25] "subtype1" "subtype1" "subtype1" "subtype1" "subtype3" "subtype1"
 [31] "subtype3" "subtype3" "subtype2" "subtype3" "subtype1" "subtype1"
 [37] "subtype3" "subtype1" "subtype2" "subtype3" "subtype3" "subtype3"
 [43] "subtype2" "subtype3" "subtype3" "subtype2" "subtype1" "subtype1"
 [49] "subtype3" "subtype1" "subtype1" "subtype3" "subtype1" "subtype1"
 [55] "subtype1" "subtype3" "subtype3" "subtype3" "subtype1" "subtype3"
 [61] "subtype1" "subtype1" "subtype1" "subtype3" "subtype3" "subtype1"
 [67] "subtype3" "subtype3" "subtype3" "subtype2" "subtype2" "subtype1"
 [73] "subtype2" "subtype1" "subtype2" "subtype1" "subtype1" "subtype2"
 [79] "subtype1" "subtype1" "subtype3" "subtype1" "subtype1" "subtype2"
 [85] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype2"
 [91] "subtype3" "subtype3" "subtype1" "subtype3" "subtype1" "subtype3"
 [97] "subtype3" "subtype1" "subtype3" "subtype3" "subtype3" "subtype1"
[103] "subtype1" "subtype1" "subtype1" "subtype1" "subtype1" "subtype2"
[109] "subtype3" "subtype1" "subtype3" "subtype3" "subtype1" "subtype1"
[115] "subtype2" "subtype3" "subtype1" "subtype1" "subtype1" "subtype1"
[121] "subtype3" "subtype2" "subtype3" "subtype2" "subtype2" "subtype1"
[127] "subtype3" "subtype3" "subtype1" "subtype1" "subtype3" "subtype3"
[133] "subtype2" "subtype1" "subtype1" "subtype1" "subtype3" "subtype2"
[139] "subtype1" "subtype2" "subtype3" "subtype2" "subtype1" "subtype3"
[145] "subtype3" "subtype1" "subtype3" "subtype1" "subtype1" "subtype1"
[151] "subtype3" "subtype2"
D10V2, continuous
D10V3, binary
          cls
clus        0  1
  subtype1 29 40
  subtype2  9 13
  subtype3 15 46
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   29   40
  subtype2    9   13
  subtype3   15   46
        clus
vv       subtype1 subtype2 subtype3
  FEMALE       29        9       15
  MALE         40       13       46
D10V4, continuous
          vv
clus       GLIOBLASTOMA MULTIFORME (GBM) TREATED PRIMARY GBM
  subtype1                             0                   0
  subtype2                             0                   1
  subtype3                             1                   0
          vv
clus       UNTREATED PRIMARY (DE NOVO) GBM
  subtype1                              69
  subtype2                              21
  subtype3                              60
D10V5, multiclass
D10V6, binary
          cls
clus        0  1
  subtype1 46 23
  subtype2 14  8
  subtype3 42 19
[1] "tbl2"
          cls
clus       [,1] [,2]
  subtype1   46   23
  subtype2   14    8
  subtype3   42   19
     clus
vv    subtype1 subtype2 subtype3
  NO        46       14       42
  YES       23        8       19
> q(save="no")
