Classifier directory BuiltClassifiers created under CHASM/BuiltClassifiers
/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_CHASM/broadinstitute.org/cancer.genome.analysis/10194/33/CHASM/snvGetTranscriptList
Generating set of 5000 Passenger Mutations
Passenger generation complete
Generating set of 5000 Null Mutations
Null generation complete
Retrieving features for training set from SNVBox
Data retrieval took 946.66574192s

Training set features stored in Train.arff
Retrieving features for null set from SNVBox
Data retrieval took 487.220246077s

Null set features stored in Null.arff
Training Random Forest Classifier
Trainset classification error is  13.12% of    9950 (kappa: 0.7364 )



Classisfier training time: 707.315845966

Classifier training complete
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/GBM-TP/5096110/mutationslist.arff
Data retrieval took 2609.626405s

Features retrieved for input mutations as .arff file
Output file generated
/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_CHASM/GBM-TP/5096208
/xchip/cga/gdac-prod/tcga-gdac/jobResults/PREPROCESSCHASM/GBM-TP/5096110
