
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/6165971/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/6165954/LGG-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LGG-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"        "-oT=LGG-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LGG-TP/6165954/LGG-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LGG-TP/6165971/transformed.cor.cli.txt"

nPatients in clinical file=408, in cluster file=365, common to both=365
[1]  40 365
[1] "1P MUTATION ANALYSIS"
[1] 3
  1P MUTATED 1P WILD-TYPE 
         142          223 
  1P MUTATED 1P WILD-TYPE 
         142          223 
[1] "1Q MUTATION ANALYSIS"
[1] 3
  1Q MUTATED 1Q WILD-TYPE 
          33          332 
  1Q MUTATED 1Q WILD-TYPE 
          33          332 
[1] "2P MUTATION ANALYSIS"
[1] 3
  2P MUTATED 2P WILD-TYPE 
          22          343 
  2P MUTATED 2P WILD-TYPE 
          22          343 
[1] "2Q MUTATION ANALYSIS"
[1] 3
  2Q MUTATED 2Q WILD-TYPE 
          20          345 
  2Q MUTATED 2Q WILD-TYPE 
          20          345 
[1] "3P MUTATION ANALYSIS"
[1] 3
  3P MUTATED 3P WILD-TYPE 
          27          338 
  3P MUTATED 3P WILD-TYPE 
          27          338 
[1] "3Q MUTATION ANALYSIS"
[1] 3
  3Q MUTATED 3Q WILD-TYPE 
          29          336 
  3Q MUTATED 3Q WILD-TYPE 
          29          336 
[1] "4P MUTATION ANALYSIS"
[1] 3
  4P MUTATED 4P WILD-TYPE 
          62          303 
  4P MUTATED 4P WILD-TYPE 
          62          303 
[1] "4Q MUTATION ANALYSIS"
[1] 3
  4Q MUTATED 4Q WILD-TYPE 
          73          292 
  4Q MUTATED 4Q WILD-TYPE 
          73          292 
[1] "5P MUTATION ANALYSIS"
[1] 3
  5P MUTATED 5P WILD-TYPE 
          34          331 
  5P MUTATED 5P WILD-TYPE 
          34          331 
[1] "5Q MUTATION ANALYSIS"
[1] 3
  5Q MUTATED 5Q WILD-TYPE 
          31          334 
  5Q MUTATED 5Q WILD-TYPE 
          31          334 
[1] "6P MUTATION ANALYSIS"
[1] 3
  6P MUTATED 6P WILD-TYPE 
          29          336 
  6P MUTATED 6P WILD-TYPE 
          29          336 
[1] "6Q MUTATION ANALYSIS"
[1] 3
  6Q MUTATED 6Q WILD-TYPE 
          51          314 
  6Q MUTATED 6Q WILD-TYPE 
          51          314 
[1] "7P MUTATION ANALYSIS"
[1] 3
  7P MUTATED 7P WILD-TYPE 
          91          274 
  7P MUTATED 7P WILD-TYPE 
          91          274 
[1] "7Q MUTATION ANALYSIS"
[1] 3
  7Q MUTATED 7Q WILD-TYPE 
         116          249 
  7Q MUTATED 7Q WILD-TYPE 
         116          249 
[1] "8P MUTATION ANALYSIS"
[1] 3
  8P MUTATED 8P WILD-TYPE 
          42          323 
  8P MUTATED 8P WILD-TYPE 
          42          323 
[1] "8Q MUTATION ANALYSIS"
[1] 3
  8Q MUTATED 8Q WILD-TYPE 
          45          320 
  8Q MUTATED 8Q WILD-TYPE 
          45          320 
[1] "9P MUTATION ANALYSIS"
[1] 3
  9P MUTATED 9P WILD-TYPE 
          95          270 
  9P MUTATED 9P WILD-TYPE 
          95          270 
[1] "9Q MUTATION ANALYSIS"
[1] 3
  9Q MUTATED 9Q WILD-TYPE 
          51          314 
  9Q MUTATED 9Q WILD-TYPE 
          51          314 
[1] "10P MUTATION ANALYSIS"
[1] 3
  10P MUTATED 10P WILD-TYPE 
           93           272 
  10P MUTATED 10P WILD-TYPE 
           93           272 
[1] "10Q MUTATION ANALYSIS"
[1] 3
  10Q MUTATED 10Q WILD-TYPE 
           74           291 
  10Q MUTATED 10Q WILD-TYPE 
           74           291 
[1] "11P MUTATION ANALYSIS"
[1] 3
  11P MUTATED 11P WILD-TYPE 
           71           294 
  11P MUTATED 11P WILD-TYPE 
           71           294 
[1] "11Q MUTATION ANALYSIS"
[1] 3
  11Q MUTATED 11Q WILD-TYPE 
           59           306 
  11Q MUTATED 11Q WILD-TYPE 
           59           306 
[1] "12P MUTATION ANALYSIS"
[1] 3
  12P MUTATED 12P WILD-TYPE 
           42           323 
  12P MUTATED 12P WILD-TYPE 
           42           323 
[1] "12Q MUTATION ANALYSIS"
[1] 3
  12Q MUTATED 12Q WILD-TYPE 
           46           319 
  12Q MUTATED 12Q WILD-TYPE 
           46           319 
[1] "13Q MUTATION ANALYSIS"
[1] 3
  13Q MUTATED 13Q WILD-TYPE 
           89           276 
  13Q MUTATED 13Q WILD-TYPE 
           89           276 
[1] "14Q MUTATION ANALYSIS"
[1] 3
  14Q MUTATED 14Q WILD-TYPE 
           59           306 
  14Q MUTATED 14Q WILD-TYPE 
           59           306 
[1] "15Q MUTATION ANALYSIS"
[1] 3
  15Q MUTATED 15Q WILD-TYPE 
           40           325 
  15Q MUTATED 15Q WILD-TYPE 
           40           325 
[1] "16P MUTATION ANALYSIS"
[1] 3
  16P MUTATED 16P WILD-TYPE 
           22           343 
  16P MUTATED 16P WILD-TYPE 
           22           343 
[1] "16Q MUTATION ANALYSIS"
[1] 3
  16Q MUTATED 16Q WILD-TYPE 
           29           336 
  16Q MUTATED 16Q WILD-TYPE 
           29           336 
[1] "17P MUTATION ANALYSIS"
[1] 3
  17P MUTATED 17P WILD-TYPE 
           24           341 
  17P MUTATED 17P WILD-TYPE 
           24           341 
[1] "17Q MUTATION ANALYSIS"
[1] 3
  17Q MUTATED 17Q WILD-TYPE 
           21           344 
  17Q MUTATED 17Q WILD-TYPE 
           21           344 
[1] "18P MUTATION ANALYSIS"
[1] 3
  18P MUTATED 18P WILD-TYPE 
           59           306 
  18P MUTATED 18P WILD-TYPE 
           59           306 
[1] "18Q MUTATION ANALYSIS"
[1] 3
  18Q MUTATED 18Q WILD-TYPE 
           51           314 
  18Q MUTATED 18Q WILD-TYPE 
           51           314 
[1] "19P MUTATION ANALYSIS"
[1] 3
  19P MUTATED 19P WILD-TYPE 
           82           283 
  19P MUTATED 19P WILD-TYPE 
           82           283 
[1] "19Q MUTATION ANALYSIS"
[1] 3
  19Q MUTATED 19Q WILD-TYPE 
          166           199 
  19Q MUTATED 19Q WILD-TYPE 
          166           199 
[1] "20P MUTATION ANALYSIS"
[1] 3
  20P MUTATED 20P WILD-TYPE 
           37           328 
  20P MUTATED 20P WILD-TYPE 
           37           328 
[1] "20Q MUTATION ANALYSIS"
[1] 3
  20Q MUTATED 20Q WILD-TYPE 
           35           330 
  20Q MUTATED 20Q WILD-TYPE 
           35           330 
[1] "21Q MUTATION ANALYSIS"
[1] 3
  21Q MUTATED 21Q WILD-TYPE 
           46           319 
  21Q MUTATED 21Q WILD-TYPE 
           46           319 
[1] "22Q MUTATION ANALYSIS"
[1] 3
  22Q MUTATED 22Q WILD-TYPE 
           51           314 
  22Q MUTATED 22Q WILD-TYPE 
           51           314 
[1] "XQ MUTATION ANALYSIS"
[1] 3
  XQ MUTATED XQ WILD-TYPE 
          79          286 
  XQ MUTATED XQ WILD-TYPE 
          79          286 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 365 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=6,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 365 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=3, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=4, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=4, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=6, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=8, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        1      8      2
  1P WILD-TYPE      8      2      6
D1V1, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          1            8
  CLUS_2          8            2
  CLUS_3          2            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED        7      2      1      1
  1P WILD-TYPE      0      4      9      3
D1V2, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          7            0
  CLUS_2          2            4
  CLUS_3          1            9
  CLUS_4          1            3
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        8     17    117
  1P WILD-TYPE    130     70     23
D1V3, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          8          130
  CLUS_2         17           70
  CLUS_3        117           23
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED        9      9    107     14
  1P WILD-TYPE    152     46      1     22
D1V4, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          9          152
  CLUS_2          9           46
  CLUS_3        107            1
  CLUS_4         14           22
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P MUTATED        9     20     27     36
  1P WILD-TYPE     43     42     41     38
D1V5, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          9           43
  CLUS_2         20           42
  CLUS_3         27           41
  CLUS_4         36           38
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        4     40     48
  1P WILD-TYPE      4     89     71
D1V6, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          4            4
  CLUS_2         40           89
  CLUS_3         48           71
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1P MUTATED        3     13     64     50      3      9
  1P WILD-TYPE     91     57      1     59      4      9
D1V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED       60     21     61
  1P WILD-TYPE      1    153     67
D1V8, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1         60            1
  CLUS_2         21          153
  CLUS_3         61           67
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P MUTATED       21     10     50     14     18
  1P WILD-TYPE     56     51     50      2     31
D1V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        2     47     64
  1P WILD-TYPE      0    122     68
D1V10, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          2            0
  CLUS_2         47          122
  CLUS_3         64           68
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1P MUTATED        2     13     17     39     22     11      1      8
  1P WILD-TYPE     47     34     27     42      6     23      3      8
D1V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1P MUTATED        1     44     68
  1P WILD-TYPE      9    125     56
D1V12, multiclass
        clus
vv       1P MUTATED 1P WILD-TYPE
  CLUS_1          1            9
  CLUS_2         44          125
  CLUS_3         68           56

Clustering(2) Variable = 1Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        1      4      0
  1Q WILD-TYPE      8      6      8
D2V1, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          1            8
  CLUS_2          4            6
  CLUS_3          0            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED        3      0      1      1
  1Q WILD-TYPE      4      6      9      3
D2V2, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          3            4
  CLUS_2          0            6
  CLUS_3          1            9
  CLUS_4          1            3
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        8     14     11
  1Q WILD-TYPE    130     73    129
D2V3, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          8          130
  CLUS_2         14           73
  CLUS_3         11          129
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED       12     10     10      1
  1Q WILD-TYPE    149     45     98     35
D2V4, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1         12          149
  CLUS_2         10           45
  CLUS_3         10           98
  CLUS_4          1           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q MUTATED        2     10      6      8
  1Q WILD-TYPE     50     52     62     66
D2V5, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          2           50
  CLUS_2         10           52
  CLUS_3          6           62
  CLUS_4          8           66
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        0     15     11
  1Q WILD-TYPE      8    114    108
D2V6, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          0            8
  CLUS_2         15          114
  CLUS_3         11          108
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  1Q MUTATED        3     10      7      8      3      2
  1Q WILD-TYPE     91     60     58    101      4     16
D2V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        5     17     11
  1Q WILD-TYPE     56    157    117
D2V8, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          5           56
  CLUS_2         17          157
  CLUS_3         11          117
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q MUTATED        9      7      9      4      4
  1Q WILD-TYPE     68     54     91     12     45
D2V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        2     18     13
  1Q WILD-TYPE      0    151    119
D2V10, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          2            0
  CLUS_2         18          151
  CLUS_3         13          119
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  1Q MUTATED        2      9      4      7      4      4      1      2
  1Q WILD-TYPE     47     38     40     74     24     30      3     14
D2V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  1Q MUTATED        2     17     14
  1Q WILD-TYPE      8    152    110
D2V12, multiclass
        clus
vv       1Q MUTATED 1Q WILD-TYPE
  CLUS_1          2            8
  CLUS_2         17          152
  CLUS_3         14          110

Clustering(3) Variable = 2P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        1      2      0
  2P WILD-TYPE      8      8      8
D3V1, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          1            8
  CLUS_2          2            8
  CLUS_3          0            8
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED        1      0      1      1
  2P WILD-TYPE      6      6      9      3
D3V2, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          1            6
  CLUS_2          0            6
  CLUS_3          1            9
  CLUS_4          1            3
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED       10      8      4
  2P WILD-TYPE    128     79    136
D3V3, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         10          128
  CLUS_2          8           79
  CLUS_3          4          136
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED       13      5      3      1
  2P WILD-TYPE    148     50    105     35
D3V4, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1         13          148
  CLUS_2          5           50
  CLUS_3          3          105
  CLUS_4          1           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P MUTATED        3      7      1      5
  2P WILD-TYPE     49     55     67     69
D3V5, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          3           49
  CLUS_2          7           55
  CLUS_3          1           67
  CLUS_4          5           69
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        0      7      9
  2P WILD-TYPE      8    122    110
D3V6, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          0            8
  CLUS_2          7          122
  CLUS_3          9          110
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2P MUTATED        5      7      3      4      3      0
  2P WILD-TYPE     89     63     62    105      4     18
D3V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        3     16      3
  2P WILD-TYPE     58    158    125
D3V8, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          3           58
  CLUS_2         16          158
  CLUS_3          3          125
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P MUTATED        7      7      3      2      1
  2P WILD-TYPE     70     54     97     14     48
D3V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        2     15      3
  2P WILD-TYPE      0    154    129
D3V10, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          2            0
  CLUS_2         15          154
  CLUS_3          3          129
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2P MUTATED        3      7      5      4      1      0      0      0
  2P WILD-TYPE     46     40     39     77     27     34      4     16
D3V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2P MUTATED        1     16      3
  2P WILD-TYPE      9    153    121
D3V12, multiclass
        clus
vv       2P MUTATED 2P WILD-TYPE
  CLUS_1          1            9
  CLUS_2         16          153
  CLUS_3          3          121

Clustering(4) Variable = 2Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        1      2      1
  2Q WILD-TYPE      8      8      7
D4V1, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          1            8
  CLUS_2          2            8
  CLUS_3          1            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED        1      0      1      2
  2Q WILD-TYPE      6      6      9      2
D4V2, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          1            6
  CLUS_2          0            6
  CLUS_3          1            9
  CLUS_4          2            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED       11      5      4
  2Q WILD-TYPE    127     82    136
D4V3, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         11          127
  CLUS_2          5           82
  CLUS_3          4          136
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED       14      3      2      1
  2Q WILD-TYPE    147     52    106     35
D4V4, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1         14          147
  CLUS_2          3           52
  CLUS_3          2          106
  CLUS_4          1           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q MUTATED        2      7      0      4
  2Q WILD-TYPE     50     55     68     70
D4V5, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          2           50
  CLUS_2          7           55
  CLUS_3          0           68
  CLUS_4          4           70
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        0      7      6
  2Q WILD-TYPE      8    122    113
D4V6, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          0            8
  CLUS_2          7          122
  CLUS_3          6          113
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  2Q MUTATED        6      6      2      3      3      0
  2Q WILD-TYPE     88     64     63    106      4     18
D4V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        2     15      3
  2Q WILD-TYPE     59    159    125
D4V8, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          2           59
  CLUS_2         15          159
  CLUS_3          3          125
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q MUTATED        5      8      2      1      2
  2Q WILD-TYPE     72     53     98     15     47
D4V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        1     13      4
  2Q WILD-TYPE      1    156    128
D4V10, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          1            1
  CLUS_2         13          156
  CLUS_3          4          128
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  2Q MUTATED        2      5      7      2      1      1      0      0
  2Q WILD-TYPE     47     42     37     79     27     33      4     16
D4V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  2Q MUTATED        1     15      2
  2Q WILD-TYPE      9    154    122
D4V12, multiclass
        clus
vv       2Q MUTATED 2Q WILD-TYPE
  CLUS_1          1            9
  CLUS_2         15          154
  CLUS_3          2          122

Clustering(5) Variable = 3P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        0      1      1
  3P WILD-TYPE      9      9      7
D5V1, multiclass
[1] "Remove cluster labels:" "3P MUTATED"            
clus
  3P MUTATED 3P WILD-TYPE 
           2           25 
  TCGA-CS-4942   TCGA-CS-4943   TCGA-CS-4944   TCGA-CS-5390   TCGA-CS-5394 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-CS-5395   TCGA-CS-5396   TCGA-DB-5270   TCGA-DB-5273   TCGA-DB-5274 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-DB-5275   TCGA-DB-5276   TCGA-DB-5278   TCGA-DB-5280   TCGA-DB-5281 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-DH-5140   TCGA-DH-5141   TCGA-DH-5142   TCGA-DH-5143   TCGA-DH-5144 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-E1-5302   TCGA-E1-5303   TCGA-E1-5311   TCGA-E1-5318   TCGA-E1-5322 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED        0      0      0      2
  3P WILD-TYPE      7      6     10      2
D5V2, multiclass
[1] "Remove cluster labels:" "3P MUTATED"            
clus
  3P MUTATED 3P WILD-TYPE 
           2           25 
  TCGA-CS-4942   TCGA-CS-4943   TCGA-CS-4944   TCGA-CS-5390   TCGA-CS-5394 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-CS-5395   TCGA-CS-5396   TCGA-DB-5270   TCGA-DB-5273   TCGA-DB-5274 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-DB-5275   TCGA-DB-5276   TCGA-DB-5278   TCGA-DB-5280   TCGA-DB-5281 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-DH-5140   TCGA-DH-5141   TCGA-DH-5142   TCGA-DH-5143   TCGA-DH-5144 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
  TCGA-E1-5302   TCGA-E1-5303   TCGA-E1-5311   TCGA-E1-5318   TCGA-E1-5322 
"3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" "3P WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED       13      7      7
  3P WILD-TYPE    125     80    133
D5V3, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         13          125
  CLUS_2          7           80
  CLUS_3          7          133
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED       14      5      7      1
  3P WILD-TYPE    147     50    101     35
D5V4, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1         14          147
  CLUS_2          5           50
  CLUS_3          7          101
  CLUS_4          1           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P MUTATED        3     11      1      5
  3P WILD-TYPE     49     51     67     69
D5V5, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          3           49
  CLUS_2         11           51
  CLUS_3          1           67
  CLUS_4          5           69
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        0     14      6
  3P WILD-TYPE      8    115    113
D5V6, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          0            8
  CLUS_2         14          115
  CLUS_3          6          113
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3P MUTATED        4      8      4      5      5      1
  3P WILD-TYPE     90     62     61    104      2     17
D5V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        3     19      5
  3P WILD-TYPE     58    155    123
D5V8, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          3           58
  CLUS_2         19          155
  CLUS_3          5          123
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P MUTATED        8      9      2      1      4
  3P WILD-TYPE     69     52     98     15     45
D5V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        1     17      6
  3P WILD-TYPE      1    152    126
D5V10, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          1            1
  CLUS_2         17          152
  CLUS_3          6          126
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3P MUTATED        5      8      4      2      2      2      1      0
  3P WILD-TYPE     44     39     40     79     26     32      3     16
D5V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3P MUTATED        1     19      4
  3P WILD-TYPE      9    150    120
D5V12, multiclass
        clus
vv       3P MUTATED 3P WILD-TYPE
  CLUS_1          1            9
  CLUS_2         19          150
  CLUS_3          4          120

Clustering(6) Variable = 3Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        1      1      2
  3Q WILD-TYPE      8      9      6
D6V1, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          1            8
  CLUS_2          1            9
  CLUS_3          2            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED        0      1      1      2
  3Q WILD-TYPE      7      5      9      2
D6V2, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          0            7
  CLUS_2          1            5
  CLUS_3          1            9
  CLUS_4          2            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED       14      8      7
  3Q WILD-TYPE    124     79    133
D6V3, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1         14          124
  CLUS_2          8           79
  CLUS_3          7          133
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED       16      5      6      2
  3Q WILD-TYPE    145     50    102     34
D6V4, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1         16          145
  CLUS_2          5           50
  CLUS_3          6          102
  CLUS_4          2           34
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q MUTATED        3     12      4      5
  3Q WILD-TYPE     49     50     64     69
D6V5, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          3           49
  CLUS_2         12           50
  CLUS_3          4           64
  CLUS_4          5           69
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        0     17      7
  3Q WILD-TYPE      8    112    112
D6V6, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          0            8
  CLUS_2         17          112
  CLUS_3          7          112
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  3Q MUTATED        6      8      3      6      5      1
  3Q WILD-TYPE     88     62     62    103      2     17
D6V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        2     20      7
  3Q WILD-TYPE     59    154    121
D6V8, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          2           59
  CLUS_2         20          154
  CLUS_3          7          121
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q MUTATED        9      9      4      0      4
  3Q WILD-TYPE     68     52     96     16     45
D6V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        1     17      8
  3Q WILD-TYPE      1    152    124
D6V10, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          1            1
  CLUS_2         17          152
  CLUS_3          8          124
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  3Q MUTATED        6      8      4      4      1      2      1      0
  3Q WILD-TYPE     43     39     40     77     27     32      3     16
D6V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  3Q MUTATED        1     20      5
  3Q WILD-TYPE      9    149    119
D6V12, multiclass
        clus
vv       3Q MUTATED 3Q WILD-TYPE
  CLUS_1          1            9
  CLUS_2         20          149
  CLUS_3          5          119

Clustering(7) Variable = 4P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        3      2      2
  4P WILD-TYPE      6      8      6
D7V1, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          3            6
  CLUS_2          2            8
  CLUS_3          2            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED        1      1      3      2
  4P WILD-TYPE      6      5      7      2
D7V2, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          1            6
  CLUS_2          1            5
  CLUS_3          3            7
  CLUS_4          2            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED       14     12     36
  4P WILD-TYPE    124     75    104
D7V3, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         14          124
  CLUS_2         12           75
  CLUS_3         36          104
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED       22      3     36      1
  4P WILD-TYPE    139     52     72     35
D7V4, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         22          139
  CLUS_2          3           52
  CLUS_3         36           72
  CLUS_4          1           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P MUTATED        6     14     12     13
  4P WILD-TYPE     46     48     56     61
D7V5, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          6           46
  CLUS_2         14           48
  CLUS_3         12           56
  CLUS_4         13           61
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        4     21     20
  4P WILD-TYPE      4    108     99
D7V6, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          4            4
  CLUS_2         21          108
  CLUS_3         20           99
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4P MUTATED       11      4     24     17      4      1
  4P WILD-TYPE     83     66     41     92      3     17
D7V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED       23     17     21
  4P WILD-TYPE     38    157    107
D7V8, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1         23           38
  CLUS_2         17          157
  CLUS_3         21          107
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P MUTATED        7     12     17      6     10
  4P WILD-TYPE     70     49     83     10     39
D7V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        2     22     28
  4P WILD-TYPE      0    147    104
D7V10, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          2            0
  CLUS_2         22          147
  CLUS_3         28          104
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4P MUTATED        2      4     13     14     10      6      2      1
  4P WILD-TYPE     47     43     31     67     18     28      2     15
D7V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4P MUTATED        1     25     26
  4P WILD-TYPE      9    144     98
D7V12, multiclass
        clus
vv       4P MUTATED 4P WILD-TYPE
  CLUS_1          1            9
  CLUS_2         25          144
  CLUS_3         26           98

Clustering(8) Variable = 4Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        3      3      2
  4Q WILD-TYPE      6      7      6
D8V1, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          3            6
  CLUS_2          3            7
  CLUS_3          2            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED        1      1      3      3
  4Q WILD-TYPE      6      5      7      1
D8V2, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          1            6
  CLUS_2          1            5
  CLUS_3          3            7
  CLUS_4          3            1
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED       23     10     40
  4Q WILD-TYPE    115     77    100
D8V3, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         23          115
  CLUS_2         10           77
  CLUS_3         40          100
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED       28      3     39      3
  4Q WILD-TYPE    133     52     69     33
D8V4, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         28          133
  CLUS_2          3           52
  CLUS_3         39           69
  CLUS_4          3           33
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q MUTATED        5     14     15     17
  4Q WILD-TYPE     47     48     53     57
D8V5, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          5           47
  CLUS_2         14           48
  CLUS_3         15           53
  CLUS_4         17           57
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        4     23     24
  4Q WILD-TYPE      4    106     95
D8V6, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          4            4
  CLUS_2         23          106
  CLUS_3         24           95
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  4Q MUTATED       14      4     26     22      4      2
  4Q WILD-TYPE     80     66     39     87      3     16
D8V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED       25     19     28
  4Q WILD-TYPE     36    155    100
D8V8, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1         25           36
  CLUS_2         19          155
  CLUS_3         28          100
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q MUTATED        6     14     21      7     11
  4Q WILD-TYPE     71     47     79      9     38
D8V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        2     23     34
  4Q WILD-TYPE      0    146     98
D8V10, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          2            0
  CLUS_2         23          146
  CLUS_3         34           98
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  4Q MUTATED        2      4     15     17     11      8      1      1
  4Q WILD-TYPE     47     43     29     64     17     26      3     15
D8V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  4Q MUTATED        1     26     32
  4Q WILD-TYPE      9    143     92
D8V12, multiclass
        clus
vv       4Q MUTATED 4Q WILD-TYPE
  CLUS_1          1            9
  CLUS_2         26          143
  CLUS_3         32           92

Clustering(9) Variable = 5P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        2      3      3
  5P WILD-TYPE      7      7      5
D9V1, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          2            7
  CLUS_2          3            7
  CLUS_3          3            5
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED        0      2      2      4
  5P WILD-TYPE      7      4      8      0
D9V2, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          0            7
  CLUS_2          2            4
  CLUS_3          2            8
  CLUS_4          4            0
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED       22     11      1
  5P WILD-TYPE    116     76    139
D9V3, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         22          116
  CLUS_2         11           76
  CLUS_3          1          139
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED       26      6      1      1
  5P WILD-TYPE    135     49    107     35
D9V4, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1         26          135
  CLUS_2          6           49
  CLUS_3          1          107
  CLUS_4          1           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P MUTATED        3      9      5      7
  5P WILD-TYPE     49     53     63     67
D9V5, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          3           49
  CLUS_2          9           53
  CLUS_3          5           63
  CLUS_4          7           67
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        0     13     11
  5P WILD-TYPE      8    116    108
D9V6, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          0            8
  CLUS_2         13          116
  CLUS_3         11          108
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5P MUTATED        9      9      1      7      4      3
  5P WILD-TYPE     85     61     64    102      3     15
D9V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        0     23     10
  5P WILD-TYPE     61    151    118
D9V8, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          0           61
  CLUS_2         23          151
  CLUS_3         10          118
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P MUTATED        8     12     10      0      2
  5P WILD-TYPE     69     49     90     16     47
D9V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        2     18     12
  5P WILD-TYPE      0    151    120
D9V10, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          2            0
  CLUS_2         18          151
  CLUS_3         12          120
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5P MUTATED        1      7     11      8      1      2      0      2
  5P WILD-TYPE     48     40     33     73     27     32      4     14
D9V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5P MUTATED        0     21     11
  5P WILD-TYPE     10    148    113
D9V12, multiclass
        clus
vv       5P MUTATED 5P WILD-TYPE
  CLUS_1          0           10
  CLUS_2         21          148
  CLUS_3         11          113

Clustering(10) Variable = 5Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        1      2      3
  5Q WILD-TYPE      8      8      5
D10V1, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          1            8
  CLUS_2          2            8
  CLUS_3          3            5
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED        0      2      1      3
  5Q WILD-TYPE      7      4      9      1
D10V2, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          0            7
  CLUS_2          2            4
  CLUS_3          1            9
  CLUS_4          3            1
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED       19     10      2
  5Q WILD-TYPE    119     77    138
D10V3, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         19          119
  CLUS_2         10           77
  CLUS_3          2          138
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED       23      6      1      1
  5Q WILD-TYPE    138     49    107     35
D10V4, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1         23          138
  CLUS_2          6           49
  CLUS_3          1          107
  CLUS_4          1           35
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q MUTATED        5     10      4      1
  5Q WILD-TYPE     47     52     64     73
D10V5, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          5           47
  CLUS_2         10           52
  CLUS_3          4           64
  CLUS_4          1           73
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        0     13      7
  5Q WILD-TYPE      8    116    112
D10V6, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          0            8
  CLUS_2         13          116
  CLUS_3          7          112
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  5Q MUTATED        8     11      1      2      5      3
  5Q WILD-TYPE     86     59     64    107      2     15
D10V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        0     24      6
  5Q WILD-TYPE     61    150    122
D10V8, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          0           61
  CLUS_2         24          150
  CLUS_3          6          122
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q MUTATED        7     13      6      0      3
  5Q WILD-TYPE     70     48     94     16     46
D10V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        2     19      8
  5Q WILD-TYPE      0    150    124
D10V10, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          2            0
  CLUS_2         19          150
  CLUS_3          8          124
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  5Q MUTATED        1      7      9      4      1      3      2      2
  5Q WILD-TYPE     48     40     35     77     27     31      2     14
D10V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  5Q MUTATED        1     22      6
  5Q WILD-TYPE      9    147    118
D10V12, multiclass
        clus
vv       5Q MUTATED 5Q WILD-TYPE
  CLUS_1          1            9
  CLUS_2         22          147
  CLUS_3          6          118

Clustering(11) Variable = 6P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        0      0      1
  6P WILD-TYPE      9     10      7
D11V1, multiclass
[1] "Remove cluster labels:" "6P MUTATED"            
clus
  6P MUTATED 6P WILD-TYPE 
           1           26 
  TCGA-CS-4942   TCGA-CS-4943   TCGA-CS-4944   TCGA-CS-5390   TCGA-CS-5394 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-CS-5395   TCGA-CS-5396   TCGA-DB-5270   TCGA-DB-5273   TCGA-DB-5274 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-DB-5275   TCGA-DB-5276   TCGA-DB-5278   TCGA-DB-5280   TCGA-DB-5281 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-DH-5140   TCGA-DH-5141   TCGA-DH-5142   TCGA-DH-5143   TCGA-DH-5144 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-E1-5302   TCGA-E1-5303   TCGA-E1-5304   TCGA-E1-5311   TCGA-E1-5318 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-E1-5322 
"6P WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED        0      0      0      1
  6P WILD-TYPE      7      6     10      3
D11V2, multiclass
[1] "Remove cluster labels:" "6P MUTATED"            
clus
  6P MUTATED 6P WILD-TYPE 
           1           26 
  TCGA-CS-4942   TCGA-CS-4943   TCGA-CS-4944   TCGA-CS-5390   TCGA-CS-5394 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-CS-5395   TCGA-CS-5396   TCGA-DB-5270   TCGA-DB-5273   TCGA-DB-5274 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-DB-5275   TCGA-DB-5276   TCGA-DB-5278   TCGA-DB-5280   TCGA-DB-5281 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-DH-5140   TCGA-DH-5141   TCGA-DH-5142   TCGA-DH-5143   TCGA-DH-5144 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-E1-5302   TCGA-E1-5303   TCGA-E1-5304   TCGA-E1-5311   TCGA-E1-5318 
"6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" "6P WILD-TYPE" 
  TCGA-E1-5322 
"6P WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED       11     11      7
  6P WILD-TYPE    127     76    133
D11V3, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         11          127
  CLUS_2         11           76
  CLUS_3          7          133
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED       14      8      4      3
  6P WILD-TYPE    147     47    104     33
D11V4, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1         14          147
  CLUS_2          8           47
  CLUS_3          4          104
  CLUS_4          3           33
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P MUTATED        6      7      1      4
  6P WILD-TYPE     46     55     67     70
D11V5, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          6           46
  CLUS_2          7           55
  CLUS_3          1           67
  CLUS_4          4           70
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        0     11      7
  6P WILD-TYPE      8    118    112
D11V6, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          0            8
  CLUS_2         11          118
  CLUS_3          7          112
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6P MUTATED        6     11      4      6      1      0
  6P WILD-TYPE     88     59     61    103      6     18
D11V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        2     18      8
  6P WILD-TYPE     59    156    120
D11V8, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          2           59
  CLUS_2         18          156
  CLUS_3          8          120
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P MUTATED       12      5      4      2      2
  6P WILD-TYPE     65     56     96     14     47
D11V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        0     16      9
  6P WILD-TYPE      2    153    123
D11V10, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          0            2
  CLUS_2         16          153
  CLUS_3          9          123
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6P MUTATED        4      7      3      4      1      4      1      1
  6P WILD-TYPE     45     40     41     77     27     30      3     15
D11V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6P MUTATED        4     17      4
  6P WILD-TYPE      6    152    120
D11V12, multiclass
        clus
vv       6P MUTATED 6P WILD-TYPE
  CLUS_1          4            6
  CLUS_2         17          152
  CLUS_3          4          120

Clustering(12) Variable = 6Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        2      0      0
  6Q WILD-TYPE      7     10      8
D12V1, multiclass
[1] "Remove cluster labels:" "6Q MUTATED"            
clus
  6Q MUTATED 6Q WILD-TYPE 
           2           25 
  TCGA-CS-4942   TCGA-CS-4943   TCGA-CS-5390   TCGA-CS-5394   TCGA-CS-5395 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-CS-5396   TCGA-DB-5270   TCGA-DB-5273   TCGA-DB-5274   TCGA-DB-5275 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-DB-5276   TCGA-DB-5277   TCGA-DB-5278   TCGA-DB-5281   TCGA-DH-5140 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-DH-5141   TCGA-DH-5142   TCGA-DH-5143   TCGA-DH-5144   TCGA-E1-5302 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-E1-5303   TCGA-E1-5304   TCGA-E1-5311   TCGA-E1-5318   TCGA-E1-5322 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED        0      0      2      0
  6Q WILD-TYPE      7      6      8      4
D12V2, multiclass
[1] "Remove cluster labels:" "6Q MUTATED"            
clus
  6Q MUTATED 6Q WILD-TYPE 
           2           25 
  TCGA-CS-4942   TCGA-CS-4943   TCGA-CS-5390   TCGA-CS-5394   TCGA-CS-5395 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-CS-5396   TCGA-DB-5270   TCGA-DB-5273   TCGA-DB-5274   TCGA-DB-5275 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-DB-5276   TCGA-DB-5277   TCGA-DB-5278   TCGA-DB-5281   TCGA-DH-5140 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-DH-5141   TCGA-DH-5142   TCGA-DH-5143   TCGA-DH-5144   TCGA-E1-5302 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
  TCGA-E1-5303   TCGA-E1-5304   TCGA-E1-5311   TCGA-E1-5318   TCGA-E1-5322 
"6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" "6Q WILD-TYPE" 
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED       22     21      8
  6Q WILD-TYPE    116     66    132
D12V3, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         22          116
  CLUS_2         21           66
  CLUS_3          8          132
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED       30     12      5      4
  6Q WILD-TYPE    131     43    103     32
D12V4, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1         30          131
  CLUS_2         12           43
  CLUS_3          5          103
  CLUS_4          4           32
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q MUTATED        8     14      6      9
  6Q WILD-TYPE     44     48     62     65
D12V5, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          8           44
  CLUS_2         14           48
  CLUS_3          6           62
  CLUS_4          9           65
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        1     22     14
  6Q WILD-TYPE      7    107    105
D12V6, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          1            7
  CLUS_2         22          107
  CLUS_3         14          105
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  6Q MUTATED       15     16      5     12      1      1
  6Q WILD-TYPE     79     54     60     97      6     17
D12V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        3     31     16
  6Q WILD-TYPE     58    143    112
D12V8, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          3           58
  CLUS_2         31          143
  CLUS_3         16          112
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q MUTATED       22      9      9      2      3
  6Q WILD-TYPE     55     52     91     14     46
D12V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        0     30     15
  6Q WILD-TYPE      2    139    117
D12V10, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          0            2
  CLUS_2         30          139
  CLUS_3         15          117
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  6Q MUTATED        9     10      4      9      2      7      2      2
  6Q WILD-TYPE     40     37     40     72     26     27      2     14
D12V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  6Q MUTATED        4     30     11
  6Q WILD-TYPE      6    139    113
D12V12, multiclass
        clus
vv       6Q MUTATED 6Q WILD-TYPE
  CLUS_1          4            6
  CLUS_2         30          139
  CLUS_3         11          113

Clustering(13) Variable = 7P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        2      2      3
  7P WILD-TYPE      7      8      5
D13V1, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          2            7
  CLUS_2          2            8
  CLUS_3          3            5
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED        1      1      3      2
  7P WILD-TYPE      6      5      7      2
D13V2, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          1            6
  CLUS_2          1            5
  CLUS_3          3            7
  CLUS_4          2            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED       21     62      8
  7P WILD-TYPE    117     25    132
D13V3, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         21          117
  CLUS_2         62           25
  CLUS_3          8          132
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED       30     40     13      6
  7P WILD-TYPE    131     15     95     30
D13V4, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         30          131
  CLUS_2         40           15
  CLUS_3         13           95
  CLUS_4          6           30
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P MUTATED       13     28     12     11
  7P WILD-TYPE     39     34     56     63
D13V5, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1         13           39
  CLUS_2         28           34
  CLUS_3         12           56
  CLUS_4         11           63
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        0     42     22
  7P WILD-TYPE      8     87     97
D13V6, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          0            8
  CLUS_2         42           87
  CLUS_3         22           97
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7P MUTATED       17     41      7     19      4      1
  7P WILD-TYPE     77     29     58     90      3     17
D13V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        6     62     21
  7P WILD-TYPE     55    112    107
D13V8, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          6           55
  CLUS_2         62          112
  CLUS_3         21          107
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P MUTATED       25     24     12      4     12
  7P WILD-TYPE     52     37     88     12     37
D13V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        1     52     24
  7P WILD-TYPE      1    117    108
D13V10, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          1            1
  CLUS_2         52          117
  CLUS_3         24          108
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7P MUTATED        9     25     13     11      4     13      1      1
  7P WILD-TYPE     40     22     31     70     24     21      3     15
D13V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7P MUTATED        8     53     16
  7P WILD-TYPE      2    116    108
D13V12, multiclass
        clus
vv       7P MUTATED 7P WILD-TYPE
  CLUS_1          8            2
  CLUS_2         53          116
  CLUS_3         16          108

Clustering(14) Variable = 7Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        3      2      3
  7Q WILD-TYPE      6      8      5
D14V1, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          3            6
  CLUS_2          2            8
  CLUS_3          3            5
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED        1      1      4      2
  7Q WILD-TYPE      6      5      6      2
D14V2, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          1            6
  CLUS_2          1            5
  CLUS_3          4            6
  CLUS_4          2            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED       31     70     15
  7Q WILD-TYPE    107     17    125
D14V3, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         31          107
  CLUS_2         70           17
  CLUS_3         15          125
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED       45     43     19      7
  7Q WILD-TYPE    116     12     89     29
D14V4, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         45          116
  CLUS_2         43           12
  CLUS_3         19           89
  CLUS_4          7           29
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q MUTATED       17     30     14     19
  7Q WILD-TYPE     35     32     54     55
D14V5, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1         17           35
  CLUS_2         30           32
  CLUS_3         14           54
  CLUS_4         19           55
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        0     48     32
  7Q WILD-TYPE      8     81     87
D14V6, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          0            8
  CLUS_2         48           81
  CLUS_3         32           87
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  7Q MUTATED       28     43     10     26      4      3
  7Q WILD-TYPE     66     27     55     83      3     15
D14V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        9     76     29
  7Q WILD-TYPE     52     98     99
D14V8, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          9           52
  CLUS_2         76           98
  CLUS_3         29           99
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q MUTATED       30     27     19      4     18
  7Q WILD-TYPE     47     34     81     12     31
D14V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        1     63     34
  7Q WILD-TYPE      1    106     98
D14V10, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          1            1
  CLUS_2         63          106
  CLUS_3         34           98
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  7Q MUTATED       12     26     17     16      8     16      1      2
  7Q WILD-TYPE     37     21     27     65     20     18      3     14
D14V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  7Q MUTATED        8     64     26
  7Q WILD-TYPE      2    105     98
D14V12, multiclass
        clus
vv       7Q MUTATED 7Q WILD-TYPE
  CLUS_1          8            2
  CLUS_2         64          105
  CLUS_3         26           98

Clustering(15) Variable = 8P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        1      2      2
  8P WILD-TYPE      8      8      6
D15V1, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          1            8
  CLUS_2          2            8
  CLUS_3          2            6
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED        0      1      1      3
  8P WILD-TYPE      7      5      9      1
D15V2, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          0            7
  CLUS_2          1            5
  CLUS_3          1            9
  CLUS_4          3            1
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED       23     15      4
  8P WILD-TYPE    115     72    136
D15V3, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1         23          115
  CLUS_2         15           72
  CLUS_3          4          136
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED       26     10      4      2
  8P WILD-TYPE    135     45    104     34
D15V4, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1         26          135
  CLUS_2         10           45
  CLUS_3          4          104
  CLUS_4          2           34
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P MUTATED        8     13      8      4
  8P WILD-TYPE     44     49     60     70
D15V5, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          8           44
  CLUS_2         13           49
  CLUS_3          8           60
  CLUS_4          4           70
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        1     19     13
  8P WILD-TYPE      7    110    106
D15V6, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          1            7
  CLUS_2         19          110
  CLUS_3         13          106
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8P MUTATED       13     12      2     10      3      2
  8P WILD-TYPE     81     58     63     99      4     16
D15V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        1     30     11
  8P WILD-TYPE     60    144    117
D15V8, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          1           60
  CLUS_2         30          144
  CLUS_3         11          117
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P MUTATED       15     10      7      1      5
  8P WILD-TYPE     62     51     93     15     44
D15V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        1     26     11
  8P WILD-TYPE      1    143    121
D15V10, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          1            1
  CLUS_2         26          143
  CLUS_3         11          121
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8P MUTATED       10     12      6      6      1      1      1      1
  8P WILD-TYPE     39     35     38     75     27     33      3     15
D15V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8P MUTATED        2     30      6
  8P WILD-TYPE      8    139    118
D15V12, multiclass
        clus
vv       8P MUTATED 8P WILD-TYPE
  CLUS_1          2            8
  CLUS_2         30          139
  CLUS_3          6          118

Clustering(16) Variable = 8Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        1      2      3
  8Q WILD-TYPE      8      8      5
D16V1, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          1            8
  CLUS_2          2            8
  CLUS_3          3            5
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED        0      2      1      3
  8Q WILD-TYPE      7      4      9      1
D16V2, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          0            7
  CLUS_2          2            4
  CLUS_3          1            9
  CLUS_4          3            1
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED       25     16      4
  8Q WILD-TYPE    113     71    136
D16V3, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         25          113
  CLUS_2         16           71
  CLUS_3          4          136
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED       28     10      4      3
  8Q WILD-TYPE    133     45    104     33
D16V4, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         28          133
  CLUS_2         10           45
  CLUS_3          4          104
  CLUS_4          3           33
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q MUTATED       11     12     10      3
  8Q WILD-TYPE     41     50     58     71
D16V5, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1         11           41
  CLUS_2         12           50
  CLUS_3         10           58
  CLUS_4          3           71
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        1     21     14
  8Q WILD-TYPE      7    108    105
D16V6, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          1            7
  CLUS_2         21          108
  CLUS_3         14          105
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  8Q MUTATED       17     11      2     10      3      2
  8Q WILD-TYPE     77     59     63     99      4     16
D16V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        1     33     11
  8Q WILD-TYPE     60    141    117
D16V8, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          1           60
  CLUS_2         33          141
  CLUS_3         11          117
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q MUTATED       17      9      7      1      7
  8Q WILD-TYPE     60     52     93     15     42
D16V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        1     29     11
  8Q WILD-TYPE      1    140    121
D16V10, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          1            1
  CLUS_2         29          140
  CLUS_3         11          121
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  8Q MUTATED       12     11      6      6      1      3      1      1
  8Q WILD-TYPE     37     36     38     75     27     31      3     15
D16V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  8Q MUTATED        2     33      6
  8Q WILD-TYPE      8    136    118
D16V12, multiclass
        clus
vv       8Q MUTATED 8Q WILD-TYPE
  CLUS_1          2            8
  CLUS_2         33          136
  CLUS_3          6          118

Clustering(17) Variable = 9P MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        2      2      3
  9P WILD-TYPE      7      8      5
D17V1, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          2            7
  CLUS_2          2            8
  CLUS_3          3            5
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED        1      1      3      2
  9P WILD-TYPE      6      5      7      2
D17V2, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          1            6
  CLUS_2          1            5
  CLUS_3          3            7
  CLUS_4          2            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED       40     32     23
  9P WILD-TYPE     98     55    117
D17V3, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         40           98
  CLUS_2         32           55
  CLUS_3         23          117
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED       54     18     16      5
  9P WILD-TYPE    107     37     92     31
D17V4, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         54          107
  CLUS_2         18           37
  CLUS_3         16           92
  CLUS_4          5           31
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P MUTATED       11     29     18     16
  9P WILD-TYPE     41     33     50     58
D17V5, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         11           41
  CLUS_2         29           33
  CLUS_3         18           50
  CLUS_4         16           58
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        2     46     26
  9P WILD-TYPE      6     83     93
D17V6, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          2            6
  CLUS_2         46           83
  CLUS_3         26           93
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9P MUTATED       24     20     12     28      7      4
  9P WILD-TYPE     70     50     53     81      0     14
D17V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED       12     53     30
  9P WILD-TYPE     49    121     98
D17V8, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1         12           49
  CLUS_2         53          121
  CLUS_3         30           98
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P MUTATED       23     19     24      5     12
  9P WILD-TYPE     54     42     76     11     37
D17V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        2     46     35
  9P WILD-TYPE      0    123     97
D17V10, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          2            0
  CLUS_2         46          123
  CLUS_3         35           97
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9P MUTATED       13     17     10     18      9     11      3      2
  9P WILD-TYPE     36     30     34     63     19     23      1     14
D17V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9P MUTATED        6     47     30
  9P WILD-TYPE      4    122     94
D17V12, multiclass
        clus
vv       9P MUTATED 9P WILD-TYPE
  CLUS_1          6            4
  CLUS_2         47          122
  CLUS_3         30           94

Clustering(18) Variable = 9Q MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        1      2      1
  9Q WILD-TYPE      8      8      7
D18V1, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          1            8
  CLUS_2          2            8
  CLUS_3          1            7
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED        1      0      1      2
  9Q WILD-TYPE      6      6      9      2
D18V2, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          1            6
  CLUS_2          0            6
  CLUS_3          1            9
  CLUS_4          2            2
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED       23     14     14
  9Q WILD-TYPE    115     73    126
D18V3, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         23          115
  CLUS_2         14           73
  CLUS_3         14          126
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED       25      9     13      3
  9Q WILD-TYPE    136     46     95     33
D18V4, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         25          136
  CLUS_2          9           46
  CLUS_3         13           95
  CLUS_4          3           33
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q MUTATED        8     14      7      7
  9Q WILD-TYPE     44     48     61     67
D18V5, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          8           44
  CLUS_2         14           48
  CLUS_3          7           61
  CLUS_4          7           67
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        1     21     14
  9Q WILD-TYPE      7    108    105
D18V6, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          1            7
  CLUS_2         21          108
  CLUS_3         14          105
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  9Q MUTATED        9     12     11     12      5      2
  9Q WILD-TYPE     85     58     54     97      2     16
D18V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED       10     26     15
  9Q WILD-TYPE     51    148    113
D18V8, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1         10           51
  CLUS_2         26          148
  CLUS_3         15          113
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q MUTATED       12      9     12      3      5
  9Q WILD-TYPE     65     52     88     13     44
D18V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        2     22     17
  9Q WILD-TYPE      0    147    115
D18V10, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          2            0
  CLUS_2         22          147
  CLUS_3         17          115
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  9Q MUTATED        3      9      7      9      6      4      2      1
  9Q WILD-TYPE     46     38     37     72     22     30      2     15
D18V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  9Q MUTATED        2     23     16
  9Q WILD-TYPE      8    146    108
D18V12, multiclass
        clus
vv       9Q MUTATED 9Q WILD-TYPE
  CLUS_1          2            8
  CLUS_2         23          146
  CLUS_3         16          108

Clustering(19) Variable = 10P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        1      2      3
  10P WILD-TYPE      8      8      5
D19V1, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           1             8
  CLUS_2           2             8
  CLUS_3           3             5
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED        0      1      2      3
  10P WILD-TYPE      7      5      8      1
D19V2, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1             5
  CLUS_3           2             8
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED       36     50      7
  10P WILD-TYPE    102     37    133
D19V3, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          36           102
  CLUS_2          50            37
  CLUS_3           7           133
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED       35     47      6      4
  10P WILD-TYPE    126      8    102     32
D19V4, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          35           126
  CLUS_2          47             8
  CLUS_3           6           102
  CLUS_4           4            32
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P MUTATED       15     29     11      9
  10P WILD-TYPE     37     33     57     65
D19V5, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1          15            37
  CLUS_2          29            33
  CLUS_3          11            57
  CLUS_4           9            65
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        1     44     19
  10P WILD-TYPE      7     85    100
D19V6, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           1             7
  CLUS_2          44            85
  CLUS_3          19           100
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10P MUTATED       19     45      2     19      4      3
  10P WILD-TYPE     75     25     63     90      3     15
D19V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        2     70     20
  10P WILD-TYPE     59    104    108
D19V8, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           2            59
  CLUS_2          70           104
  CLUS_3          20           108
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P MUTATED       30     23     16      1     11
  10P WILD-TYPE     47     38     84     15     38
D19V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        0     56     25
  10P WILD-TYPE      2    113    107
D19V10, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           0             2
  CLUS_2          56           113
  CLUS_3          25           107
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10P MUTATED       12     30      8     14      2      9      2      4
  10P WILD-TYPE     37     17     36     67     26     25      2     12
D19V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10P MUTATED        7     59     15
  10P WILD-TYPE      3    110    109
D19V12, multiclass
        clus
vv       10P MUTATED 10P WILD-TYPE
  CLUS_1           7             3
  CLUS_2          59           110
  CLUS_3          15           109

Clustering(20) Variable = 10Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        0      1      3
  10Q WILD-TYPE      9      9      5
D20V1, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           0             9
  CLUS_2           1             9
  CLUS_3           3             5
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED        0      1      1      2
  10Q WILD-TYPE      7      5      9      2
D20V2, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1             5
  CLUS_3           1             9
  CLUS_4           2             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED       15     53      6
  10Q WILD-TYPE    123     34    134
D20V3, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          15           123
  CLUS_2          53            34
  CLUS_3           6           134
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED       17     47      6      3
  10Q WILD-TYPE    144      8    102     33
D20V4, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1          17           144
  CLUS_2          47             8
  CLUS_3           6           102
  CLUS_4           3            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q MUTATED        7     28      9      7
  10Q WILD-TYPE     45     34     59     67
D20V5, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           7            45
  CLUS_2          28            34
  CLUS_3           9            59
  CLUS_4           7            67
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        1     38     12
  10Q WILD-TYPE      7     91    107
D20V6, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           1             7
  CLUS_2          38            91
  CLUS_3          12           107
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  10Q MUTATED        6     45      2     16      3      1
  10Q WILD-TYPE     88     25     63     93      4     17
D20V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        2     55     16
  10Q WILD-TYPE     59    119    112
D20V8, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           2            59
  CLUS_2          55           119
  CLUS_3          16           112
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q MUTATED       25     15     14      1     10
  10Q WILD-TYPE     52     46     86     15     39
D20V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        1     42     22
  10Q WILD-TYPE      1    127    110
D20V10, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           1             1
  CLUS_2          42           127
  CLUS_3          22           110
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  10Q MUTATED        3     29      4     12      2     11      1      3
  10Q WILD-TYPE     46     18     40     69     26     23      3     13
D20V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  10Q MUTATED        7     44     14
  10Q WILD-TYPE      3    125    110
D20V12, multiclass
        clus
vv       10Q MUTATED 10Q WILD-TYPE
  CLUS_1           7             3
  CLUS_2          44           125
  CLUS_3          14           110

Clustering(21) Variable = 11P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        2      4      1
  11P WILD-TYPE      7      6      7
D21V1, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           2             7
  CLUS_2           4             6
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED        2      0      2      3
  11P WILD-TYPE      5      6      8      1
D21V2, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           2             5
  CLUS_2           0             6
  CLUS_3           2             8
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED       36     16     19
  11P WILD-TYPE    102     71    121
D21V3, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          36           102
  CLUS_2          16            71
  CLUS_3          19           121
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED       44      8     16      3
  11P WILD-TYPE    117     47     92     33
D21V4, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          44           117
  CLUS_2           8            47
  CLUS_3          16            92
  CLUS_4           3            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P MUTATED       10     18     14     11
  11P WILD-TYPE     42     44     54     63
D21V5, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1          10            42
  CLUS_2          18            44
  CLUS_3          14            54
  CLUS_4          11            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        1     32     20
  11P WILD-TYPE      7     97     99
D21V6, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           1             7
  CLUS_2          32            97
  CLUS_3          20            99
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11P MUTATED       16     18     11     15      5      5
  11P WILD-TYPE     78     52     54     94      2     13
D21V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        9     40     21
  11P WILD-TYPE     52    134    107
D21V8, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           9            52
  CLUS_2          40           134
  CLUS_3          21           107
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P MUTATED       15     19     17      4      8
  11P WILD-TYPE     62     42     83     12     41
D21V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        2     36     25
  11P WILD-TYPE      0    133    107
D21V10, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           2             0
  CLUS_2          36           133
  CLUS_3          25           107
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11P MUTATED        8     11     12     14      6      6      3      3
  11P WILD-TYPE     41     36     32     67     22     28      1     13
D21V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11P MUTATED        4     37     22
  11P WILD-TYPE      6    132    102
D21V12, multiclass
        clus
vv       11P MUTATED 11P WILD-TYPE
  CLUS_1           4             6
  CLUS_2          37           132
  CLUS_3          22           102

Clustering(22) Variable = 11Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        0      4      1
  11Q WILD-TYPE      9      6      7
D22V1, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           0             9
  CLUS_2           4             6
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED        2      0      0      3
  11Q WILD-TYPE      5      6     10      1
D22V2, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           2             5
  CLUS_2           0             6
  CLUS_3           0            10
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED       23     15     21
  11Q WILD-TYPE    115     72    119
D22V3, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          23           115
  CLUS_2          15            72
  CLUS_3          21           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED       29      9     17      3
  11Q WILD-TYPE    132     46     91     33
D22V4, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          29           132
  CLUS_2           9            46
  CLUS_3          17            91
  CLUS_4           3            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q MUTATED        6     11     13     11
  11Q WILD-TYPE     46     51     55     63
D22V5, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           6            46
  CLUS_2          11            51
  CLUS_3          13            55
  CLUS_4          11            63
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        0     26     15
  11Q WILD-TYPE      8    103    104
D22V6, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           0             8
  CLUS_2          26           103
  CLUS_3          15           104
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  11Q MUTATED       10     13     13     15      4      3
  11Q WILD-TYPE     84     57     52     94      3     15
D22V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED       11     29     18
  11Q WILD-TYPE     50    145    110
D22V8, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1          11            50
  CLUS_2          29           145
  CLUS_3          18           110
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q MUTATED       13     10     15      4      8
  11Q WILD-TYPE     64     51     85     12     41
D22V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        2     28     20
  11Q WILD-TYPE      0    141    112
D22V10, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           2             0
  CLUS_2          28           141
  CLUS_3          20           112
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  11Q MUTATED        6      8      9     14      5      7      0      1
  11Q WILD-TYPE     43     39     35     67     23     27      4     15
D22V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  11Q MUTATED        3     29     18
  11Q WILD-TYPE      7    140    106
D22V12, multiclass
        clus
vv       11Q MUTATED 11Q WILD-TYPE
  CLUS_1           3             7
  CLUS_2          29           140
  CLUS_3          18           106

Clustering(23) Variable = 12P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        2      2      0
  12P WILD-TYPE      7      8      8
D23V1, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           2             7
  CLUS_2           2             8
  CLUS_3           0             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED        0      0      2      2
  12P WILD-TYPE      7      6      8      2
D23V2, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             6
  CLUS_3           2             8
  CLUS_4           2             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED       26      8      8
  12P WILD-TYPE    112     79    132
D23V3, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          26           112
  CLUS_2           8            79
  CLUS_3           8           132
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED       27      6      8      1
  12P WILD-TYPE    134     49    100     35
D23V4, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1          27           134
  CLUS_2           6            49
  CLUS_3           8           100
  CLUS_4           1            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P MUTATED        9     10      8      6
  12P WILD-TYPE     43     52     60     68
D23V5, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           9            43
  CLUS_2          10            52
  CLUS_3           8            60
  CLUS_4           6            68
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        1     18     14
  12P WILD-TYPE      7    111    105
D23V6, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           1             7
  CLUS_2          18           111
  CLUS_3          14           105
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12P MUTATED       14     12      5      8      1      2
  12P WILD-TYPE     80     58     60    101      6     16
D23V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        2     29     11
  12P WILD-TYPE     59    145    117
D23V8, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           2            59
  CLUS_2          29           145
  CLUS_3          11           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P MUTATED       10     14      6      2      7
  12P WILD-TYPE     67     47     94     14     42
D23V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        0     31      8
  12P WILD-TYPE      2    138    124
D23V10, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           0             2
  CLUS_2          31           138
  CLUS_3           8           124
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12P MUTATED        7      9     10      4      3      4      2      0
  12P WILD-TYPE     42     38     34     77     25     30      2     16
D23V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12P MUTATED        1     28     10
  12P WILD-TYPE      9    141    114
D23V12, multiclass
        clus
vv       12P MUTATED 12P WILD-TYPE
  CLUS_1           1             9
  CLUS_2          28           141
  CLUS_3          10           114

Clustering(24) Variable = 12Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        1      2      1
  12Q WILD-TYPE      8      8      7
D24V1, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           1             8
  CLUS_2           2             8
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED        0      0      1      3
  12Q WILD-TYPE      7      6      9      1
D24V2, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             6
  CLUS_3           1             9
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED       32      8      6
  12Q WILD-TYPE    106     79    134
D24V3, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          32           106
  CLUS_2           8            79
  CLUS_3           6           134
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED       32      5      7      2
  12Q WILD-TYPE    129     50    101     34
D24V4, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1          32           129
  CLUS_2           5            50
  CLUS_3           7           101
  CLUS_4           2            34
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q MUTATED        7      9      9     10
  12Q WILD-TYPE     45     53     59     64
D24V5, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           7            45
  CLUS_2           9            53
  CLUS_3           9            59
  CLUS_4          10            64
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        1     17     17
  12Q WILD-TYPE      7    112    102
D24V6, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           1             7
  CLUS_2          17           112
  CLUS_3          17           102
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  12Q MUTATED       14     13      4     11      2      2
  12Q WILD-TYPE     80     57     61     98      5     16
D24V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        1     32     13
  12Q WILD-TYPE     60    142    115
D24V8, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           1            60
  CLUS_2          32           142
  CLUS_3          13           115
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q MUTATED       10     13     10      1      8
  12Q WILD-TYPE     67     48     90     15     41
D24V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        0     29     13
  12Q WILD-TYPE      2    140    119
D24V10, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           0             2
  CLUS_2          29           140
  CLUS_3          13           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  12Q MUTATED        5      8     11      7      3      5      2      1
  12Q WILD-TYPE     44     39     33     74     25     29      2     15
D24V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  12Q MUTATED        1     27     14
  12Q WILD-TYPE      9    142    110
D24V12, multiclass
        clus
vv       12Q MUTATED 12Q WILD-TYPE
  CLUS_1           1             9
  CLUS_2          27           142
  CLUS_3          14           110

Clustering(25) Variable = 13Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED        5      3      1
  13Q WILD-TYPE      4      7      7
D25V1, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           5             4
  CLUS_2           3             7
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED        0      0      5      4
  13Q WILD-TYPE      7      6      5      0
D25V2, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             6
  CLUS_3           5             5
  CLUS_4           4             0
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED       43     20     26
  13Q WILD-TYPE     95     67    114
D25V3, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          43            95
  CLUS_2          20            67
  CLUS_3          26           114
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED       50     15     21      3
  13Q WILD-TYPE    111     40     87     33
D25V4, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          50           111
  CLUS_2          15            40
  CLUS_3          21            87
  CLUS_4           3            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q MUTATED        8     24     15     16
  13Q WILD-TYPE     44     38     53     58
D25V5, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           8            44
  CLUS_2          24            38
  CLUS_3          15            53
  CLUS_4          16            58
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED        3     33     27
  13Q WILD-TYPE      5     96     92
D25V6, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           3             5
  CLUS_2          33            96
  CLUS_3          27            92
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  13Q MUTATED       27     18     13     22      5      4
  13Q WILD-TYPE     67     52     52     87      2     14
D25V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED       12     50     27
  13Q WILD-TYPE     49    124    101
D25V8, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1          12            49
  CLUS_2          50           124
  CLUS_3          27           101
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q MUTATED       20     22     19      4     13
  13Q WILD-TYPE     57     39     81     12     36
D25V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED        2     46     30
  13Q WILD-TYPE      0    123    102
D25V10, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           2             0
  CLUS_2          46           123
  CLUS_3          30           102
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  13Q MUTATED       13     15     19     15      4      9      0      3
  13Q WILD-TYPE     36     32     25     66     24     25      4     13
D25V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  13Q MUTATED        3     50     25
  13Q WILD-TYPE      7    119     99
D25V12, multiclass
        clus
vv       13Q MUTATED 13Q WILD-TYPE
  CLUS_1           3             7
  CLUS_2          50           119
  CLUS_3          25            99

Clustering(26) Variable = 14Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        3      1      1
  14Q WILD-TYPE      6      9      7
D26V1, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           3             6
  CLUS_2           1             9
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED        0      1      3      1
  14Q WILD-TYPE      7      5      7      3
D26V2, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1             5
  CLUS_3           3             7
  CLUS_4           1             3
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED       15     27     17
  14Q WILD-TYPE    123     60    123
D26V3, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1          15           123
  CLUS_2          27            60
  CLUS_3          17           123
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED       22     19     14      3
  14Q WILD-TYPE    139     36     94     33
D26V4, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1          22           139
  CLUS_2          19            36
  CLUS_3          14            94
  CLUS_4           3            33
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q MUTATED        6     16     12      7
  14Q WILD-TYPE     46     46     56     67
D26V5, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           6            46
  CLUS_2          16            46
  CLUS_3          12            56
  CLUS_4           7            67
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        1     26     14
  14Q WILD-TYPE      7    103    105
D26V6, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           1             7
  CLUS_2          26           103
  CLUS_3          14           105
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  14Q MUTATED        8     24      7     15      2      2
  14Q WILD-TYPE     86     46     58     94      5     16
D26V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        7     36     15
  14Q WILD-TYPE     54    138    113
D26V8, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           7            54
  CLUS_2          36           138
  CLUS_3          15           113
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q MUTATED       25      9     11      3      4
  14Q WILD-TYPE     52     52     89     13     45
D26V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        2     34     16
  14Q WILD-TYPE      0    135    116
D26V10, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           2             0
  CLUS_2          34           135
  CLUS_3          16           116
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  14Q MUTATED        5     20      6     10      3      4      1      3
  14Q WILD-TYPE     44     27     38     71     25     30      3     13
D26V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  14Q MUTATED        3     34     15
  14Q WILD-TYPE      7    135    109
D26V12, multiclass
        clus
vv       14Q MUTATED 14Q WILD-TYPE
  CLUS_1           3             7
  CLUS_2          34           135
  CLUS_3          15           109

Clustering(27) Variable = 15Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        1      3      1
  15Q WILD-TYPE      8      7      7
D27V1, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           1             8
  CLUS_2           3             7
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED        1      1      1      2
  15Q WILD-TYPE      6      5      9      2
D27V2, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           1             6
  CLUS_2           1             5
  CLUS_3           1             9
  CLUS_4           2             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED       10      9     21
  15Q WILD-TYPE    128     78    119
D27V3, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          10           128
  CLUS_2           9            78
  CLUS_3          21           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED       16      4     20      0
  15Q WILD-TYPE    145     51     88     36
D27V4, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          16           145
  CLUS_2           4            51
  CLUS_3          20            88
  CLUS_4           0            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q MUTATED        3     12      8      4
  15Q WILD-TYPE     49     50     60     70
D27V5, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           3            49
  CLUS_2          12            50
  CLUS_3           8            60
  CLUS_4           4            70
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        1     20      6
  15Q WILD-TYPE      7    109    113
D27V6, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           1             7
  CLUS_2          20           109
  CLUS_3           6           113
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  15Q MUTATED        7      9     15      5      3      1
  15Q WILD-TYPE     87     61     50    104      4     17
D27V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED       12     20      8
  15Q WILD-TYPE     49    154    120
D27V8, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1          12            49
  CLUS_2          20           154
  CLUS_3           8           120
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q MUTATED       13     10      4      1      5
  15Q WILD-TYPE     64     51     96     15     44
D27V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        1     22     10
  15Q WILD-TYPE      1    147    122
D27V10, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           1             1
  CLUS_2          22           147
  CLUS_3          10           122
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  15Q MUTATED        5      7      7      4      4      4      1      1
  15Q WILD-TYPE     44     40     37     77     24     30      3     15
D27V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  15Q MUTATED        2     23      8
  15Q WILD-TYPE      8    146    116
D27V12, multiclass
        clus
vv       15Q MUTATED 15Q WILD-TYPE
  CLUS_1           2             8
  CLUS_2          23           146
  CLUS_3           8           116

Clustering(28) Variable = 16P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        0      1      2
  16P WILD-TYPE      9      9      6
D28V1, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           0             9
  CLUS_2           1             9
  CLUS_3           2             6
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED        0      1      0      2
  16P WILD-TYPE      7      5     10      2
D28V2, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1             5
  CLUS_3           0            10
  CLUS_4           2             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED       10      8      4
  16P WILD-TYPE    128     79    136
D28V3, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          10           128
  CLUS_2           8            79
  CLUS_3           4           136
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED       12      5      5      0
  16P WILD-TYPE    149     50    103     36
D28V4, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1          12           149
  CLUS_2           5            50
  CLUS_3           5           103
  CLUS_4           0            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P MUTATED        3      7      3      5
  16P WILD-TYPE     49     55     65     69
D28V5, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           3            49
  CLUS_2           7            55
  CLUS_3           3            65
  CLUS_4           5            69
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        0     10      8
  16P WILD-TYPE      8    119    111
D28V6, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           0             8
  CLUS_2          10           119
  CLUS_3           8           111
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16P MUTATED        2      5      4      6      4      1
  16P WILD-TYPE     92     65     61    103      3     17
D28V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        2     11      9
  16P WILD-TYPE     59    163    119
D28V8, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           2            59
  CLUS_2          11           163
  CLUS_3           9           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P MUTATED        1      7      9      2      2
  16P WILD-TYPE     76     54     91     14     47
D28V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        2      6     13
  16P WILD-TYPE      0    163    119
D28V10, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           2             0
  CLUS_2           6           163
  CLUS_3          13           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16P MUTATED        0      3      5      7      1      4      0      1
  16P WILD-TYPE     49     44     39     74     27     30      4     15
D28V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16P MUTATED        4      9      8
  16P WILD-TYPE      6    160    116
D28V12, multiclass
        clus
vv       16P MUTATED 16P WILD-TYPE
  CLUS_1           4             6
  CLUS_2           9           160
  CLUS_3           8           116

Clustering(29) Variable = 16Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        1      1      2
  16Q WILD-TYPE      8      9      6
D29V1, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           1             8
  CLUS_2           1             9
  CLUS_3           2             6
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED        0      1      1      2
  16Q WILD-TYPE      7      5      9      2
D29V2, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           0             7
  CLUS_2           1             5
  CLUS_3           1             9
  CLUS_4           2             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED       14     10      5
  16Q WILD-TYPE    124     77    135
D29V3, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1          14           124
  CLUS_2          10            77
  CLUS_3           5           135
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED       15      9      5      0
  16Q WILD-TYPE    146     46    103     36
D29V4, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1          15           146
  CLUS_2           9            46
  CLUS_3           5           103
  CLUS_4           0            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q MUTATED        4      9      5      5
  16Q WILD-TYPE     48     53     63     69
D29V5, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           4            48
  CLUS_2           9            53
  CLUS_3           5            63
  CLUS_4           5            69
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        0     14      9
  16Q WILD-TYPE      8    115    110
D29V6, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           0             8
  CLUS_2          14           115
  CLUS_3           9           110
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  16Q MUTATED        5      9      4      7      3      1
  16Q WILD-TYPE     89     61     61    102      4     17
D29V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        2     17     10
  16Q WILD-TYPE     59    157    118
D29V8, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           2            59
  CLUS_2          17           157
  CLUS_3          10           118
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q MUTATED        6      6     10      2      3
  16Q WILD-TYPE     71     55     90     14     46
D29V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        1     11     15
  16Q WILD-TYPE      1    158    117
D29V10, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           1             1
  CLUS_2          11           158
  CLUS_3          15           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  16Q MUTATED        2      6      5      8      1      4      0      1
  16Q WILD-TYPE     47     41     39     73     27     30      4     15
D29V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  16Q MUTATED        4     13     10
  16Q WILD-TYPE      6    156    114
D29V12, multiclass
        clus
vv       16Q MUTATED 16Q WILD-TYPE
  CLUS_1           4             6
  CLUS_2          13           156
  CLUS_3          10           114

Clustering(30) Variable = 17P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        0      1      0
  17P WILD-TYPE      9      9      8
D30V1, multiclass
[1] "Remove cluster labels:" "17P MUTATED"           
clus
  17P MUTATED 17P WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-DH-5144    TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5311    TCGA-E1-5318 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-E1-5322 
"17P WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED        0      0      0      1
  17P WILD-TYPE      7      6     10      3
D30V2, multiclass
[1] "Remove cluster labels:" "17P MUTATED"           
clus
  17P MUTATED 17P WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-DH-5144    TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5311    TCGA-E1-5318 
"17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" "17P WILD-TYPE" 
   TCGA-E1-5322 
"17P WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        8     11      5
  17P WILD-TYPE    130     76    135
D30V3, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           8           130
  CLUS_2          11            76
  CLUS_3           5           135
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED       11      7      5      1
  17P WILD-TYPE    150     48    103     35
D30V4, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1          11           150
  CLUS_2           7            48
  CLUS_3           5           103
  CLUS_4           1            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P MUTATED        3      7      4      4
  17P WILD-TYPE     49     55     64     70
D30V5, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           3            49
  CLUS_2           7            55
  CLUS_3           4            64
  CLUS_4           4            70
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        0     10      8
  17P WILD-TYPE      8    119    111
D30V6, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           0             8
  CLUS_2          10           119
  CLUS_3           8           111
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17P MUTATED        3     10      4      2      4      1
  17P WILD-TYPE     91     60     61    107      3     17
D30V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        2     18      4
  17P WILD-TYPE     59    156    124
D30V8, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           2            59
  CLUS_2          18           156
  CLUS_3           4           124
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P MUTATED       10      9      1      1      2
  17P WILD-TYPE     67     52     99     15     47
D30V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        2     17      4
  17P WILD-TYPE      0    152    128
D30V10, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           2             0
  CLUS_2          17           152
  CLUS_3           4           128
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17P MUTATED        2      9      4      2      1      2      2      1
  17P WILD-TYPE     47     38     40     79     27     32      2     15
D30V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17P MUTATED        2     18      3
  17P WILD-TYPE      8    151    121
D30V12, multiclass
        clus
vv       17P MUTATED 17P WILD-TYPE
  CLUS_1           2             8
  CLUS_2          18           151
  CLUS_3           3           121

Clustering(31) Variable = 17Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        0      1      0
  17Q WILD-TYPE      9      9      8
D31V1, multiclass
[1] "Remove cluster labels:" "17Q MUTATED"           
clus
  17Q MUTATED 17Q WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-DH-5144    TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5311    TCGA-E1-5318 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-E1-5322 
"17Q WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED        0      0      0      1
  17Q WILD-TYPE      7      6     10      3
D31V2, multiclass
[1] "Remove cluster labels:" "17Q MUTATED"           
clus
  17Q MUTATED 17Q WILD-TYPE 
            1            26 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-CS-5395    TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-DB-5275    TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-DB-5281    TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-DH-5144    TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5311    TCGA-E1-5318 
"17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" "17Q WILD-TYPE" 
   TCGA-E1-5322 
"17Q WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        8      8      5
  17Q WILD-TYPE    130     79    135
D31V3, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           8           130
  CLUS_2           8            79
  CLUS_3           5           135
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED        9      5      6      1
  17Q WILD-TYPE    152     50    102     35
D31V4, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           9           152
  CLUS_2           5            50
  CLUS_3           6           102
  CLUS_4           1            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q MUTATED        3      5      4      3
  17Q WILD-TYPE     49     57     64     71
D31V5, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           3            49
  CLUS_2           5            57
  CLUS_3           4            64
  CLUS_4           3            71
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        0      9      6
  17Q WILD-TYPE      8    120    113
D31V6, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           0             8
  CLUS_2           9           120
  CLUS_3           6           113
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  17Q MUTATED        3      7      5      2      3      1
  17Q WILD-TYPE     91     63     60    107      4     17
D31V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        3     14      4
  17Q WILD-TYPE     58    160    124
D31V8, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           3            58
  CLUS_2          14           160
  CLUS_3           4           124
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q MUTATED        8      8      0      2      2
  17Q WILD-TYPE     69     53    100     14     47
D31V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        1     15      4
  17Q WILD-TYPE      1    154    128
D31V10, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           1             1
  CLUS_2          15           154
  CLUS_3           4           128
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  17Q MUTATED        2      6      5      1      1      2      2      1
  17Q WILD-TYPE     47     41     39     80     27     32      2     15
D31V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  17Q MUTATED        2     16      2
  17Q WILD-TYPE      8    153    122
D31V12, multiclass
        clus
vv       17Q MUTATED 17Q WILD-TYPE
  CLUS_1           2             8
  CLUS_2          16           153
  CLUS_3           2           122

Clustering(32) Variable = 18P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        2      4      1
  18P WILD-TYPE      7      6      7
D32V1, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           2             7
  CLUS_2           4             6
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED        1      0      2      4
  18P WILD-TYPE      6      6      8      0
D32V2, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           1             6
  CLUS_2           0             6
  CLUS_3           2             8
  CLUS_4           4             0
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED       22     14     23
  18P WILD-TYPE    116     73    117
D32V3, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          22           116
  CLUS_2          14            73
  CLUS_3          23           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED       28      9     21      1
  18P WILD-TYPE    133     46     87     35
D32V4, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          28           133
  CLUS_2           9            46
  CLUS_3          21            87
  CLUS_4           1            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P MUTATED        8     16     12      9
  18P WILD-TYPE     44     46     56     65
D32V5, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           8            44
  CLUS_2          16            46
  CLUS_3          12            56
  CLUS_4           9            65
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        2     27     16
  18P WILD-TYPE      6    102    103
D32V6, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           2             6
  CLUS_2          27           102
  CLUS_3          16           103
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18P MUTATED       14     10     13     15      4      2
  18P WILD-TYPE     80     60     52     94      3     16
D32V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED       11     29     18
  18P WILD-TYPE     50    145    110
D32V8, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1          11            50
  CLUS_2          29           145
  CLUS_3          18           110
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P MUTATED       15     10     18      4      6
  18P WILD-TYPE     62     51     82     12     43
D32V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        2     32     19
  18P WILD-TYPE      0    137    113
D32V10, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           2             0
  CLUS_2          32           137
  CLUS_3          19           113
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18P MUTATED       10     11     10     13      3      3      0      3
  18P WILD-TYPE     39     36     34     68     25     31      4     13
D32V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18P MUTATED        1     33     19
  18P WILD-TYPE      9    136    105
D32V12, multiclass
        clus
vv       18P MUTATED 18P WILD-TYPE
  CLUS_1           1             9
  CLUS_2          33           136
  CLUS_3          19           105

Clustering(33) Variable = 18Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        1      4      0
  18Q WILD-TYPE      8      6      8
D33V1, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           1             8
  CLUS_2           4             6
  CLUS_3           0             8
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED        1      0      1      3
  18Q WILD-TYPE      6      6      9      1
D33V2, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           1             6
  CLUS_2           0             6
  CLUS_3           1             9
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED       15     12     24
  18Q WILD-TYPE    123     75    116
D33V3, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          15           123
  CLUS_2          12            75
  CLUS_3          24           116
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED       20      8     22      1
  18Q WILD-TYPE    141     47     86     35
D33V4, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          20           141
  CLUS_2           8            47
  CLUS_3          22            86
  CLUS_4           1            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q MUTATED        5     14     12      9
  18Q WILD-TYPE     47     48     56     65
D33V5, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           5            47
  CLUS_2          14            48
  CLUS_3          12            56
  CLUS_4           9            65
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        2     23     15
  18Q WILD-TYPE      6    106    104
D33V6, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           2             6
  CLUS_2          23           106
  CLUS_3          15           104
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  18Q MUTATED        9      8     14     13      4      2
  18Q WILD-TYPE     85     62     51     96      3     16
D33V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED       12     22     16
  18Q WILD-TYPE     49    152    112
D33V8, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1          12            49
  CLUS_2          22           152
  CLUS_3          16           112
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q MUTATED       13      8     16      4      6
  18Q WILD-TYPE     64     53     84     12     43
D33V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        2     28     17
  18Q WILD-TYPE      0    141    115
D33V10, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           2             0
  CLUS_2          28           141
  CLUS_3          17           115
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  18Q MUTATED        8     11      7     12      3      4      0      2
  18Q WILD-TYPE     41     36     37     69     25     30      4     14
D33V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  18Q MUTATED        1     28     18
  18Q WILD-TYPE      9    141    106
D33V12, multiclass
        clus
vv       18Q MUTATED 18Q WILD-TYPE
  CLUS_1           1             9
  CLUS_2          28           141
  CLUS_3          18           106

Clustering(34) Variable = 19P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        1      6      3
  19P WILD-TYPE      8      4      5
D34V1, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           1             8
  CLUS_2           6             4
  CLUS_3           3             5
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED        4      1      2      3
  19P WILD-TYPE      3      5      8      1
D34V2, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           4             3
  CLUS_2           1             5
  CLUS_3           2             8
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED       14     27     41
  19P WILD-TYPE    124     60     99
D34V3, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          14           124
  CLUS_2          27            60
  CLUS_3          41            99
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED       16     22     38      4
  19P WILD-TYPE    145     33     70     32
D34V4, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          16           145
  CLUS_2          22            33
  CLUS_3          38            70
  CLUS_4           4            32
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P MUTATED       11     19     10     15
  19P WILD-TYPE     41     43     58     59
D34V5, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          11            41
  CLUS_2          19            43
  CLUS_3          10            58
  CLUS_4          15            59
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        1     33     21
  19P WILD-TYPE      7     96     98
D34V6, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           1             7
  CLUS_2          33            96
  CLUS_3          21            98
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19P MUTATED        8     22     24     23      2      3
  19P WILD-TYPE     86     48     41     86      5     15
D34V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED       23     35     24
  19P WILD-TYPE     38    139    104
D34V8, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1          23            38
  CLUS_2          35           139
  CLUS_3          24           104
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P MUTATED       16     16     20      7     10
  19P WILD-TYPE     61     45     80      9     39
D34V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        0     39     30
  19P WILD-TYPE      2    130    102
D34V10, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           0             2
  CLUS_2          39           130
  CLUS_3          30           102
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19P MUTATED        5     15     11     19      7     10      1      1
  19P WILD-TYPE     44     32     33     62     21     24      3     15
D34V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19P MUTATED        3     39     27
  19P WILD-TYPE      7    130     97
D34V12, multiclass
        clus
vv       19P MUTATED 19P WILD-TYPE
  CLUS_1           3             7
  CLUS_2          39           130
  CLUS_3          27            97

Clustering(35) Variable = 19Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        3      8      4
  19Q WILD-TYPE      6      2      4
D35V1, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           3             6
  CLUS_2           8             2
  CLUS_3           4             4
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED        6      2      4      3
  19Q WILD-TYPE      1      4      6      1
D35V2, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           6             1
  CLUS_2           2             4
  CLUS_3           4             6
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED       17     26    123
  19Q WILD-TYPE    121     61     17
D35V3, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          17           121
  CLUS_2          26            61
  CLUS_3         123            17
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED       22     18    107     15
  19Q WILD-TYPE    139     37      1     21
D35V4, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          22           139
  CLUS_2          18            37
  CLUS_3         107             1
  CLUS_4          15            21
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q MUTATED       15     28     26     38
  19Q WILD-TYPE     37     34     42     36
D35V5, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          15            37
  CLUS_2          28            34
  CLUS_3          26            42
  CLUS_4          38            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        4     49     54
  19Q WILD-TYPE      4     80     65
D35V6, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           4             4
  CLUS_2          49            80
  CLUS_3          54            65
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  19Q MUTATED       12     20     64     56      2     11
  19Q WILD-TYPE     82     50      1     53      5      7
D35V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED       60     37     68
  19Q WILD-TYPE      1    137     60
D35V8, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1          60             1
  CLUS_2          37           137
  CLUS_3          68            60
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q MUTATED       23     22     55     13     20
  19Q WILD-TYPE     54     39     45      3     29
D35V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        0     60     73
  19Q WILD-TYPE      2    109     59
D35V10, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           0             2
  CLUS_2          60           109
  CLUS_3          73            59
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  19Q MUTATED        4     18     22     42     22     14      2      9
  19Q WILD-TYPE     45     29     22     39      6     20      2      7
D35V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  19Q MUTATED        3     57     73
  19Q WILD-TYPE      7    112     51
D35V12, multiclass
        clus
vv       19Q MUTATED 19Q WILD-TYPE
  CLUS_1           3             7
  CLUS_2          57           112
  CLUS_3          73            51

Clustering(36) Variable = 20P MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        0      1      2
  20P WILD-TYPE      9      9      6
D36V1, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           0             9
  CLUS_2           1             9
  CLUS_3           2             6
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED        0      0      1      2
  20P WILD-TYPE      7      6      9      2
D36V2, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             6
  CLUS_3           1             9
  CLUS_4           2             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED       10     24      3
  20P WILD-TYPE    128     63    137
D36V3, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          10           128
  CLUS_2          24            63
  CLUS_3           3           137
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED       11     21      4      1
  20P WILD-TYPE    150     34    104     35
D36V4, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1          11           150
  CLUS_2          21            34
  CLUS_3           4           104
  CLUS_4           1            35
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P MUTATED        3     15      2      6
  20P WILD-TYPE     49     47     66     68
D36V5, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           3            49
  CLUS_2          15            47
  CLUS_3           2            66
  CLUS_4           6            68
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        0     18      8
  20P WILD-TYPE      8    111    111
D36V6, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           0             8
  CLUS_2          18           111
  CLUS_3           8           111
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20P MUTATED        5     18      3      8      3      0
  20P WILD-TYPE     89     52     62    101      4     18
D36V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        1     28      8
  20P WILD-TYPE     60    146    120
D36V8, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           1            60
  CLUS_2          28           146
  CLUS_3           8           120
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P MUTATED        9     10      5      1      6
  20P WILD-TYPE     68     51     95     15     43
D36V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        1     19     11
  20P WILD-TYPE      1    150    121
D36V10, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           1             1
  CLUS_2          19           150
  CLUS_3          11           121
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20P MUTATED        0     10      5      4      2      8      1      1
  20P WILD-TYPE     49     37     39     77     26     26      3     15
D36V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20P MUTATED        4     21      6
  20P WILD-TYPE      6    148    118
D36V12, multiclass
        clus
vv       20P MUTATED 20P WILD-TYPE
  CLUS_1           4             6
  CLUS_2          21           148
  CLUS_3           6           118

Clustering(37) Variable = 20Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        0      1      1
  20Q WILD-TYPE      9      9      7
D37V1, multiclass
[1] "Remove cluster labels:" "20Q MUTATED"           
clus
  20Q MUTATED 20Q WILD-TYPE 
            2            25 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280    TCGA-DB-5281 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5322 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED        0      0      1      1
  20Q WILD-TYPE      7      6      9      3
D37V2, multiclass
[1] "Remove cluster labels:" "20Q MUTATED"           
clus
  20Q MUTATED 20Q WILD-TYPE 
            2            25 
   TCGA-CS-4942    TCGA-CS-4943    TCGA-CS-4944    TCGA-CS-5390    TCGA-CS-5394 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-CS-5396    TCGA-DB-5270    TCGA-DB-5273    TCGA-DB-5274    TCGA-DB-5275 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-DB-5276    TCGA-DB-5277    TCGA-DB-5278    TCGA-DB-5280    TCGA-DB-5281 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-DH-5140    TCGA-DH-5141    TCGA-DH-5142    TCGA-DH-5143    TCGA-DH-5144 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
   TCGA-E1-5302    TCGA-E1-5303    TCGA-E1-5311    TCGA-E1-5318    TCGA-E1-5322 
"20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" "20Q WILD-TYPE" 
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        8     23      4
  20Q WILD-TYPE    130     64    136
D37V3, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           8           130
  CLUS_2          23            64
  CLUS_3           4           136
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED        9     22      4      0
  20Q WILD-TYPE    152     33    104     36
D37V4, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           9           152
  CLUS_2          22            33
  CLUS_3           4           104
  CLUS_4           0            36
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q MUTATED        5     14      2      3
  20Q WILD-TYPE     47     48     66     71
D37V5, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           5            47
  CLUS_2          14            48
  CLUS_3           2            66
  CLUS_4           3            71
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        0     17      7
  20Q WILD-TYPE      8    112    112
D37V6, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           0             8
  CLUS_2          17           112
  CLUS_3           7           112
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  20Q MUTATED        4     21      3      5      2      0
  20Q WILD-TYPE     90     49     62    104      5     18
D37V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        1     29      5
  20Q WILD-TYPE     60    145    123
D37V8, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           1            60
  CLUS_2          29           145
  CLUS_3           5           123
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q MUTATED       12     10      2      1      5
  20Q WILD-TYPE     65     51     98     15     44
D37V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        1     21      8
  20Q WILD-TYPE      1    148    124
D37V10, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           1             1
  CLUS_2          21           148
  CLUS_3           8           124
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  20Q MUTATED        1     12      4      1      2      8      1      1
  20Q WILD-TYPE     48     35     40     80     26     26      3     15
D37V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  20Q MUTATED        4     22      4
  20Q WILD-TYPE      6    147    120
D37V12, multiclass
        clus
vv       20Q MUTATED 20Q WILD-TYPE
  CLUS_1           4             6
  CLUS_2          22           147
  CLUS_3           4           120

Clustering(38) Variable = 21Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        2      2      1
  21Q WILD-TYPE      7      8      7
D38V1, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           2             7
  CLUS_2           2             8
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED        0      0      2      3
  21Q WILD-TYPE      7      6      8      1
D38V2, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             6
  CLUS_3           2             8
  CLUS_4           3             1
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED       19     14     13
  21Q WILD-TYPE    119     73    127
D38V3, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          19           119
  CLUS_2          14            73
  CLUS_3          13           127
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED       23     12      9      2
  21Q WILD-TYPE    138     43     99     34
D38V4, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1          23           138
  CLUS_2          12            43
  CLUS_3           9            99
  CLUS_4           2            34
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q MUTATED        4     14     10      7
  21Q WILD-TYPE     48     48     58     67
D38V5, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           4            48
  CLUS_2          14            48
  CLUS_3          10            58
  CLUS_4           7            67
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        0     21     14
  21Q WILD-TYPE      8    108    105
D38V6, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           0             8
  CLUS_2          21           108
  CLUS_3          14           105
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  21Q MUTATED       13     14      5      9      3      2
  21Q WILD-TYPE     81     56     60    100      4     16
D38V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        3     30     13
  21Q WILD-TYPE     58    144    115
D38V8, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           3            58
  CLUS_2          30           144
  CLUS_3          13           115
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q MUTATED       13     12      7      0      7
  21Q WILD-TYPE     64     49     93     16     42
D38V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        1     25     13
  21Q WILD-TYPE      1    144    119
D38V10, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           1             1
  CLUS_2          25           144
  CLUS_3          13           119
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  21Q MUTATED        7     11      6      6      1      6      1      1
  21Q WILD-TYPE     42     36     38     75     27     28      3     15
D38V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  21Q MUTATED        2     25     12
  21Q WILD-TYPE      8    144    112
D38V12, multiclass
        clus
vv       21Q MUTATED 21Q WILD-TYPE
  CLUS_1           2             8
  CLUS_2          25           144
  CLUS_3          12           112

Clustering(39) Variable = 22Q MUTATION ANALYSIS
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        2      1      1
  22Q WILD-TYPE      7      9      7
D39V1, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           2             7
  CLUS_2           1             9
  CLUS_3           1             7
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED        0      0      2      2
  22Q WILD-TYPE      7      6      8      2
D39V2, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           0             7
  CLUS_2           0             6
  CLUS_3           2             8
  CLUS_4           2             2
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED       16     22     13
  22Q WILD-TYPE    122     65    127
D39V3, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1          16           122
  CLUS_2          22            65
  CLUS_3          13           127
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED       18     16     13      4
  22Q WILD-TYPE    143     39     95     32
D39V4, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1          18           143
  CLUS_2          16            39
  CLUS_3          13            95
  CLUS_4           4            32
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q MUTATED        3     20      7      6
  22Q WILD-TYPE     49     42     61     68
D39V5, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           3            49
  CLUS_2          20            42
  CLUS_3           7            61
  CLUS_4           6            68
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        0     26     10
  22Q WILD-TYPE      8    103    109
D39V6, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           0             8
  CLUS_2          26           103
  CLUS_3          10           109
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  22Q MUTATED        7     20      9     10      3      1
  22Q WILD-TYPE     87     50     56     99      4     17
D39V7, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        8     31     11
  22Q WILD-TYPE     53    143    117
D39V8, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           8            53
  CLUS_2          31           143
  CLUS_3          11           117
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q MUTATED       15      9      8      2      9
  22Q WILD-TYPE     62     52     92     14     40
D39V9, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        1     24     18
  22Q WILD-TYPE      1    145    114
D39V10, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           1             1
  CLUS_2          24           145
  CLUS_3          18           114
               vv
clus            CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  22Q MUTATED        2     13      9      5      3      7      1      3
  22Q WILD-TYPE     47     34     35     76     25     27      3     13
D39V11, multiclass
               vv
clus            CLUS_1 CLUS_2 CLUS_3
  22Q MUTATED        3     26     14
  22Q WILD-TYPE      7    143    110
D39V12, multiclass
        clus
vv       22Q MUTATED 22Q WILD-TYPE
  CLUS_1           3             7
  CLUS_2          26           143
  CLUS_3          14           110

Clustering(40) Variable = XQ MUTATION ANALYSIS
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        2      2      3
  XQ WILD-TYPE      7      8      5
D40V1, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          2            7
  CLUS_2          2            8
  CLUS_3          3            5
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED        0      2      2      3
  XQ WILD-TYPE      7      4      8      1
D40V2, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          0            7
  CLUS_2          2            4
  CLUS_3          2            8
  CLUS_4          3            1
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED       32     15     32
  XQ WILD-TYPE    106     72    108
D40V3, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         32          106
  CLUS_2         15           72
  CLUS_3         32          108
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED       38     11     27      3
  XQ WILD-TYPE    123     44     81     33
D40V4, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         38          123
  CLUS_2         11           44
  CLUS_3         27           81
  CLUS_4          3           33
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ MUTATED        8     21     17      9
  XQ WILD-TYPE     44     41     51     65
D40V5, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          8           44
  CLUS_2         21           41
  CLUS_3         17           51
  CLUS_4          9           65
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        1     37     17
  XQ WILD-TYPE      7     92    102
D40V6, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          1            7
  CLUS_2         37           92
  CLUS_3         17          102
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6
  XQ MUTATED       20     16     20     16      3      4
  XQ WILD-TYPE     74     54     45     93      4     14
D40V7, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED       20     40     19
  XQ WILD-TYPE     41    134    109
D40V8, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1         20           41
  CLUS_2         40          134
  CLUS_3         19          109
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ MUTATED       20     13     14      5     13
  XQ WILD-TYPE     57     48     86     11     36
D40V9, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        1     38     26
  XQ WILD-TYPE      1    131    106
D40V10, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          1            1
  CLUS_2         38          131
  CLUS_3         26          106
              vv
clus           CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5 CLUS_6 CLUS_7 CLUS_8
  XQ MUTATED       11     15      9      9      7      7      3      4
  XQ WILD-TYPE     38     32     35     72     21     27      1     12
D40V11, multiclass
              vv
clus           CLUS_1 CLUS_2 CLUS_3
  XQ MUTATED        4     42     19
  XQ WILD-TYPE      6    127    105
D40V12, multiclass
        clus
vv       XQ MUTATED XQ WILD-TYPE
  CLUS_1          4            6
  CLUS_2         42          127
  CLUS_3         19          105
> q(save="no")
