
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/12/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/6158764/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUAD-TP/6154697/LUAD-TP.merged_data.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=1", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/Append_Data/LUAD-TP/6154697/LUAD-TP.merged_data.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/6158764/transformed.cor.cli.txt"

nPatients in clinical file=461, in cluster file=493, common to both=455
[1]  80 455
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              122               333 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              122               333 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              269               186 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              269               186 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              141               314 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              141               314 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              127               328 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              127               328 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               36               419 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               36               419 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               75               380 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               75               380 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               75               380 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               75               380 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               42               413 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               42               413 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              249               206 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              249               206 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              109               346 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              109               346 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              129               326 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              129               326 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               56               399 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               56               399 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              236               219 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              236               219 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              195               260 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              195               260 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              113               342 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              113               342 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              219               236 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              219               236 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               40               415 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               40               415 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               427 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               28               427 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               101                354 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               101                354 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                72                383 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                72                383 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                87                368 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                87                368 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
               107                348 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
               107                348 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               123                332 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               123                332 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               118                337 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               118                337 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                41                414 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                41                414 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               111                344 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               111                344 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                32                423 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                32                423 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               115                340 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               115                340 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                86                369 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                86                369 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                76                379 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                76                379 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               172                283 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               172                283 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                87                368 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                87                368 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                62                393 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                62                393 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                29                426 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                29                426 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                65                390 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                65                390 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               151                304 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               151                304 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               174                281 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               174                281 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                84                371 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                84                371 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                58                397 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                58                397 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               66               389 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               66               389 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               74               381 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               74               381 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               27               428 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               27               428 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               24               431 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               24               431 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               23               432 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               23               432 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              191               264 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              191               264 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
              132               323 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
              132               323 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              106               349 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              106               349 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              121               334 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              121               334 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               38               417 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               38               417 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              133               322 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              133               322 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               94               361 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               94               361 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              193               262 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              193               262 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               30               425 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               30               425 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               35               420 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               35               420 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              176               279 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              176               279 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               49               406 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               49               406 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              235               220 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              235               220 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              221               234 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              221               234 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                98                357 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                98                357 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               118                337 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               118                337 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               104                351 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               104                351 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                83                372 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                83                372 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                97                358 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                97                358 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                85                370 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                85                370 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               218                237 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               218                237 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               103                352 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               103                352 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               214                241 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               214                241 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               100                355 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               100                355 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               127                328 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               127                328 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               191                264 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               191                264 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                51                404 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                51                404 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               155                300 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               155                300 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               190                265 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               190                265 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               221                234 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               221                234 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               142                313 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               142                313 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
               107                348 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
               107                348 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                64                391 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                64                391 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               148                307 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               148                307 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               194                261 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               194                261 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               55               400 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               55               400 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "YEARSTOBIRTH"                          
 [2] "VITALSTATUS"                           
 [3] "DAYSTODEATH"                           
 [4] "DAYSTOLASTFOLLOWUP"                    
 [5] "PRIMARYSITEOFDESEASE"                  
 [6] "NEOPLASM.DISEASESTAGE"                 
 [7] "PATHOLOGY.T.STAGE"                     
 [8] "PATHOLOGY.N.STAGE"                     
 [9] "PATHOLOGY.M.STAGE"                     
[10] "DCCUPLOADDATE"                         
[11] "GENDER"                                
[12] "DATEOFINITIALPATHOLOGICDIAGNOSIS"      
[13] "DAYSTOLASTKNOWNALIVE"                  
[14] "RADIATIONTHERAPY"                      
[15] "KARNOFSKYPERFORMANCESCORE"             
[16] "HISTOLOGICALTYPE"                      
[17] "RADIATIONS.RADIATION.REGIMENINDICATION"
[18] "NUMBERPACKYEARSSMOKED"                 
[19] "YEAROFTOBACCOSMOKINGONSET"             
[20] "COMPLETENESS.OF.RESECTION"             
[21] "GLEASON_SCORE"                         
[22] "PSA_VALUE"                             
[23] "DAYS_TO_PSA"                           
[24] "BATCHNUMBER"                           

Input Data has 24 rows and 455 columns.

[1] "Batch" "24"   
[1] "Last Follow UP"
TCGA-05-4244 TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 
          NA         1523           NA          606          426         1369 
TCGA-05-4390 TCGA-05-4395 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        1126           NA           NA           NA         1431           NA 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4410 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
         578          610           NA           NA          454           NA 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
         911          365          913          669          791          791 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
         761          761          730           NA          457          151 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
         881          670           30           62           14          224 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
         181          264         2973         3674         1147         1491 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
         863         1073          354         1357          448           NA 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
         133         1323         1429          400         1367          741 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
        1280         1301           97          246         1130         1163 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
        1036          189          722         1013          863          383 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
         723          328          302          845          362          658 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
         705         1938           NA         1110           NA          444 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
         325          366          218          557           NA          882 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
         535          719          385           98          260          485 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
         466          287          337          135          114           76 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        2318           NA           NA           NA         1081         1421 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
         428          999          268          896          157         1700 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-49-6767 
         457          369          890          521          354           NA 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
          NA         2174         2146          455          785          944 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
        1499          245          282          267         1091         2369 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
         653           NA           NA          567          882          764 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 
         686           NA           NA           NA           NA           NA 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
          NA         1015           NA          255           NA           NA 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
         424          280          701         1178         1479         1374 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
          87            2          992           24           NA         1238 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
          NA           28         1475           NA           NA           NA 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
          67           NA           NA         1826           NA         1233 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7570 TCGA-55-7573 
        2161         1170           18           34           NA            4 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7724 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
          95           40           NA           39           31           31 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
          24           54           19           16          197           21 
TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 
           3           31            5           33           21           92 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 
           6           43           26            4           47           15 
TCGA-55-8204 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
          NA           46           66          215           43           22 
TCGA-55-8505 TCGA-55-8506 TCGA-55-8507 TCGA-55-8508 TCGA-55-8510 TCGA-55-8511 
          29           11           NA           NA          227            9 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
           3          146          212           15           48           49 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
          65          105           33           31           29           48 
TCGA-55-A491 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
          NA            1           28            5           47          161 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 
          NA         1215         1289           NA         2345         1444 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
          NA           NA           NA           NA         2067         2199 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
          NA         1245          910         1728          628         1189 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
        1685         1126           NA         2676           62         1305 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
         864         1559          865           30          609          573 
TCGA-67-3773 TCGA-67-3774 TCGA-67-4679 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
         427          385           NA          173          140          422 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
         202          186          690          414          165          230 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
         184           70           89          382           99           76 
TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
         128          214           61         1599          711          911 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
         799          467          130           40          164           38 
TCGA-73-7498 TCGA-73-7499 TCGA-75-5122 TCGA-75-5125 TCGA-75-5126 TCGA-75-5146 
         621          519           NA           NA           NA           NA 
TCGA-75-5147 TCGA-75-6203 TCGA-75-6205 TCGA-75-6206 TCGA-75-6207 TCGA-75-6211 
          NA           NA           NA           NA           NA           NA 
TCGA-75-6212 TCGA-75-6214 TCGA-75-7025 TCGA-75-7027 TCGA-75-7030 TCGA-75-7031 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
          NA           NA           NA           NA           NA         1093 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
          NA         1201          760           NA           NA           NA 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
          NA         1220          678          214           NA         6812 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
          NA           NA           NA           NA           NA           NA 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
         327          881           NA          994         6345           NA 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-80-5607 TCGA-80-5608 TCGA-80-5611 
        2360           NA           NA           NA           NA           NA 
TCGA-83-5908 TCGA-86-6562 TCGA-86-6851 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
         823           NA           NA           11          630          422 
TCGA-86-7714 TCGA-86-7953 TCGA-86-7954 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
          NA          591           NA          508          745           10 
TCGA-86-8056 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
          NA           13           24          479          332          476 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8281 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
         482           16           NA           19           26           34 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 
          44           33           17           15          454          404 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4JF TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
          10           30           NA           13           39          323 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
          NA           60          309           79          417          372 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
         842          224           35          492          196          173 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
          36           44          218          297          127          185 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
          34            2          163           21           40          132 
TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
         123          963         1965         1932         1331          775 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
         181           NA           22          106          181           NA 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
          86          146           15          197          271          392 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
         427          458           44          169          153          113 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
         287          282          238          212           76          116 
TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW 
           6          285          621          353           NA           NA 
TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 
          NA           NA           NA           NA           NA           NA 
TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF 
          NA           NA           NA           NA           NA           NA 
TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
         142           NA           NA           NA         1490 
Variable 1:'AGE':	nDistinctValues=50,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 2:'VITALSTATUS':	nDistinctValues=2,	numeric=TRUE,	binary=TRUE,	exclude=FALSE.
Variable 3:'DAYSTODEATH':	nDistinctValues=113,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 4:'DAYSTOLASTFOLLOWUP':	nDistinctValues=270,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 5:'PRIMARY.SITE.OF.DISEASE':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 6:'NEOPLASM.DISEASESTAGE':	nDistinctValues=8,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'PATHOLOGY.T.STAGE':	nDistinctValues=9,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'PATHOLOGY.N.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'PATHOLOGY.M.STAGE':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'DCCUPLOADDAY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 11:'GENDER':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'DAYOFINITIALPATHOLOGICDIAGNOSIS':	nDistinctValues=22,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 13:'DAYSTOLASTKNOWNALIVE':	nDistinctValues=40,	numeric=TRUE,	binary=FALSE,	exclude=TRUE.
Variable 14:'RADIATION.THERAPY':	nDistinctValues=1,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 15:'KARNOFSKY.PERFORMANCE.SCORE':	nDistinctValues=7,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 16:'HISTOLOGICAL.TYPE':	nDistinctValues=12,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 17:'RADIATIONS.RADIATION.REGIMENINDICATION':	nDistinctValues=2,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 18:'NUMBERPACKYEARSSMOKED':	nDistinctValues=90,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 19:'YEAROFTOBACCOSMOKINGONSET':	nDistinctValues=57,	numeric=TRUE,	binary=FALSE,	exclude=FALSE.
Variable 20:'COMPLETENESS.OF.RESECTION':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 21:'GLEASON_SCORE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 22:'PSA_VALUE':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 23:'DAYS_TO_PSA':	nDistinctValues=0,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
Variable 24:'BATCH.NUMBER':	nDistinctValues=30,	numeric=FALSE,	binary=FALSE,	exclude=TRUE.
[1] "rownames(nsurv.mat)"
 [1] "AGE"                                   
 [2] "NEOPLASM.DISEASESTAGE"                 
 [3] "PATHOLOGY.T.STAGE"                     
 [4] "PATHOLOGY.N.STAGE"                     
 [5] "PATHOLOGY.M.STAGE"                     
 [6] "GENDER"                                
 [7] "KARNOFSKY.PERFORMANCE.SCORE"           
 [8] "HISTOLOGICAL.TYPE"                     
 [9] "RADIATIONS.RADIATION.REGIMENINDICATION"
[10] "NUMBERPACKYEARSSMOKED"                 
[11] "YEAROFTOBACCOSMOKINGONSET"             
[12] "COMPLETENESS.OF.RESECTION"             
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T" "3"          
[1] "PATHOLOGY.N" "4"          
Output Data has 455 columns, 1 survival variables, and 12 non-survival variables.
AGE, nv=50, binary=FALSE, numeric=TRUE
NEOPLASM.DISEASESTAGE, nv=8, binary=FALSE, numeric=FALSE
PATHOLOGY.T.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.T',vnm)"
vv
 T1  T2  T3  T4 
141 255  39  18 
[1] "table(vv)"
vv
 T1  T2  T3  T4 
141 255  39  18 
$ClinVariableName
[1] "PATHOLOGY.T.STAGE"

$Table
vv
 T1  T2  T3  T4 
141 255  39  18 

$nClasses
[1] 4

$ClinVariableType
[1] "multiclass(4)"


 T1  T2  T3  T4 
141 255  39  18 
PATHOLOGY.N.STAGE, nv=4, binary=FALSE, numeric=TRUE
[1] "grepl('PATHOLOGY.N',vnm)"
vv
 N0  N1  N2  N3 
290  85  68   2 
[1] "table(vv)"
vv
   N0    N1 N2+N3 
  290    85    70 
$ClinVariableName
[1] "PATHOLOGY.N.STAGE"

$Table
vv
 N0  N1  N2  N3 
290  85  68   2 

$nClasses
[1] 3

$ClinVariableType
[1] "multiclass(3)"


   N0    N1 N2+N3 
  290    85    70 
PATHOLOGY.M.STAGE, nv=5, binary=FALSE, numeric=FALSE
GENDER, nv=2, binary=FALSE, numeric=FALSE
KARNOFSKY.PERFORMANCE.SCORE, nv=7, binary=FALSE, numeric=TRUE
HISTOLOGICAL.TYPE, nv=12, binary=FALSE, numeric=FALSE
RADIATIONS.RADIATION.REGIMENINDICATION, nv=2, binary=FALSE, numeric=FALSE
NUMBERPACKYEARSSMOKED, nv=90, binary=FALSE, numeric=TRUE
YEAROFTOBACCOSMOKINGONSET, nv=57, binary=FALSE, numeric=TRUE
COMPLETENESS.OF.RESECTION, nv=4, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
D1V1, survival
                   sevent
clus2                 0   1
  1P GAIN MUTATED    80  37
  1P GAIN WILD-TYPE 221  81
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              117               302 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
               37                81 
$`1P GAIN MUTATED`
TCGA-05-4382 TCGA-05-4402 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 
       19.92         8.02        29.95        30.02        26.01        25.02 
TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
        4.96        22.03         0.99        44.61        14.73        46.98 
TCGA-44-2659 TCGA-44-2662 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 
       44.94        42.08        23.18        36.49        16.41         7.17 
TCGA-44-7669 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A47B TCGA-44-A4SU 
       18.87        23.64        12.66         3.22         9.44         2.50 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-6742 TCGA-49-6744 
       12.66        46.72        14.07        29.46        15.02        29.26 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 
       20.48        71.47        49.28         8.05         8.78        77.88 
TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6597 
       18.64        25.12        22.55         3.88        11.05        33.37 
TCGA-55-1592 TCGA-55-6712 TCGA-55-6969 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       23.05         0.79        40.70         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-7281 TCGA-55-7573 TCGA-55-7576 TCGA-55-7911 
       32.71        60.03         0.59         0.13         1.32         0.69 
TCGA-55-8089 TCGA-55-8096 TCGA-55-8206 TCGA-55-8514 TCGA-55-A48X TCGA-55-A494 
        3.02         1.55         1.51         6.97         1.08         0.16 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8399 TCGA-62-A46O TCGA-64-1676 TCGA-64-1679 
        1.55         5.29        77.10        47.77        56.81        55.40 
TCGA-64-1681 TCGA-64-5781 TCGA-67-6217 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
       38.33        51.25        13.87        12.56         3.25         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
        4.21         7.04         2.01        15.35         4.27         5.39 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7154 TCGA-78-7155 TCGA-78-7161 
      163.10        27.16        19.27        19.50        38.50         7.04 
TCGA-78-7162 TCGA-78-7167 TCGA-78-7535 TCGA-78-7542 TCGA-78-8640 TCGA-78-8655 
      104.15        88.11        31.20        10.55       208.60        77.59 
TCGA-86-7953 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 
       19.43         0.33         0.79        15.75        15.85         0.53 
TCGA-86-8585 TCGA-86-8673 TCGA-86-A456 TCGA-86-A4P7 TCGA-91-6828 TCGA-91-6831 
        1.12        14.93         0.33         0.43        10.62        10.16 
TCGA-91-6840 TCGA-91-6847 TCGA-95-7039 TCGA-95-7944 TCGA-97-7546 TCGA-97-7553 
       12.23        27.68         1.12         0.69        31.66        43.76 
TCGA-97-7937 TCGA-97-8177 TCGA-99-7458 TCGA-J2-A4AG TCGA-MN-A4N1 TCGA-MP-A4SW 
        5.95         4.80        12.89         7.82         9.37        58.45 
TCGA-MP-A4T6 TCGA-MP-A4TC TCGA-MP-A4TF 
       58.85         2.43        11.05 

$`1P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4433 
        8.98        12.00        21.99        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       15.02        15.02        28.96         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       28.37        35.28        11.64        26.30         4.37        43.50 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       13.15        24.36        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       38.24        34.06         6.21        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        23.77        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       21.63        63.72        32.45        14.60        10.68        12.03 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A 
       18.31        29.00        17.59         8.55        15.95        15.32 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       11.08         4.44         3.75        76.21        28.11        28.57 
TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       35.54        32.84         8.81         5.16        55.89        12.13 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       17.13        11.64        70.55        14.96        25.81        31.04 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        9.27        35.87        21.47         8.45        15.12        29.00 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
       42.31        25.51        12.16         6.21         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-1595 
       34.26        30.54        13.94         9.21        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6970 
       45.17         2.86         0.07        32.61        42.48        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6984 TCGA-55-6985 
        0.92        48.49         3.88         5.46        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 
       71.05        38.47         1.12         3.12         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8090 
        0.10         1.02         0.16         1.08         0.69         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8207 TCGA-55-8299 
        1.41         0.85         0.13         0.49         2.17         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 
        1.41         0.72         0.95         0.36         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        3.45         1.02         0.95         1.58         0.03         0.92 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8402 TCGA-62-A46P 
        4.54        39.95        42.38        14.60        47.47        19.53 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 
       56.68        54.35        67.96        72.30        39.22        40.93 
TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       29.92        20.65        39.09        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
       14.04        12.66         5.69         4.60         6.64         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       22.68        13.61         5.42         7.56         6.05         2.30 
TCGA-69-7979 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 
        2.93        52.57        23.38        29.95        26.27         1.32 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 
        1.25        20.42        17.06         5.65        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       21.86        39.48        24.99        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
       22.29       223.96         8.48        26.53         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-78-8648 TCGA-78-8660 TCGA-78-8662 
       10.75        28.96        32.68        39.72        10.55       110.50 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 
       27.06        12.36         0.36        20.71        13.87        16.70 
TCGA-86-8054 TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 TCGA-86-8358 TCGA-86-8359 
       24.49         0.43        10.92        15.65         0.62         0.85 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8674 TCGA-86-A4D0 
        1.45         1.08         0.56         0.49        13.28         0.99 
TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
        1.28        41.33         1.97         2.60        13.71         7.36 
TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC 
        1.15        16.18         6.44         5.69         1.18         1.45 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 
        7.17         9.76         4.18         6.08         0.07         5.36 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 
        1.32         4.34         4.04        64.60        63.52        25.48 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        0.49         6.48         8.91        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 
        5.56         5.03         3.72         9.44         9.27         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV 
        2.50         3.81         0.20        20.42        11.61        86.14 
TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 
       49.35        37.35        86.04         5.49         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
       31.20        10.09        29.42         4.67        14.10        11.15 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  1P GAIN MUTATED 1P GAIN WILD-TYPE 
             0.13              0.03 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
           208.60            223.96 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
            14.73             12.08 
[1] "0.1 - 208.6 (14.7)" "0.0 - 224.0 (12.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "1P GAIN MUTATED"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED"   "1P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"1P GAIN WILD-TYPE"   "1P GAIN MUTATED" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" "1P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D1V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  1P GAIN MUTATED         1       28       35        15        20         14
  1P GAIN WILD-TYPE       2       85       96        29        45         51
                   vv
clus                STAGE IIIB STAGE IV
  1P GAIN MUTATED            2        6
  1P GAIN WILD-TYPE          9       16
D1V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P GAIN MUTATED    39  71   8   4
  1P GAIN WILD-TYPE 102 184  31  14
D1V4, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  T1              39               102
  T2              71               184
  T3               8                31
  T4               4                14
                   vv
clus                 N0  N1 N2+N3
  1P GAIN MUTATED    74  32    14
  1P GAIN WILD-TYPE 216  53    56
D1V5, multiclass
       clus
vv      1P GAIN MUTATED 1P GAIN WILD-TYPE
  N0                 74               216
  N1                 32                53
  N2+N3              14                56
                   vv
clus                 M0  M1 M1A M1B  MX
  1P GAIN MUTATED    88   6   0   0  26
  1P GAIN WILD-TYPE 226  12   1   3  89
D1V6, multiclass
D1V7, binary
                   cls
clus                  0   1
  1P GAIN MUTATED    67  55
  1P GAIN WILD-TYPE 177 156
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED     67   55
  1P GAIN WILD-TYPE  177  156
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  FEMALE              67               177
  MALE                55               156
D1V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1P GAIN MUTATED                            2
  1P GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1P GAIN MUTATED                                  20
  1P GAIN WILD-TYPE                                72
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P GAIN MUTATED                                                   84
  1P GAIN WILD-TYPE                                                208
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1P GAIN MUTATED                                            0
  1P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1P GAIN MUTATED                                               6
  1P GAIN WILD-TYPE                                            11
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1P GAIN MUTATED                                0
  1P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1P GAIN MUTATED                                    2
  1P GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1P GAIN MUTATED                              0                             4
  1P GAIN WILD-TYPE                            2                            14
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  1P GAIN MUTATED                                 0
  1P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1P GAIN MUTATED                                               2
  1P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1P GAIN MUTATED                              2
  1P GAIN WILD-TYPE                            5
D1V9, multiclass
D1V10, binary
                   cls
clus                  0   1
  1P GAIN MUTATED     4 118
  1P GAIN WILD-TYPE  17 316
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P GAIN MUTATED      4  118
  1P GAIN WILD-TYPE   17  316
     clus
vv    1P GAIN MUTATED 1P GAIN WILD-TYPE
  NO                4                17
  YES             118               316
D1V11, continuous
D1V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P GAIN MUTATED    80   4   1   3
  1P GAIN WILD-TYPE 232   6   3  15
D1V13, multiclass
    clus
vv   1P GAIN MUTATED 1P GAIN WILD-TYPE
  R0              80               232
  R1               4                 6
  R2               1                 3
  RX               3                15

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
D2V1, survival
                   sevent
clus2                 0   1
  1Q GAIN MUTATED   183  69
  1Q GAIN WILD-TYPE 118  49
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              252               167 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
               69                49 
$`1Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 
        8.02         2.96        14.93        29.95        30.02        25.02 
TCGA-05-4432 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       25.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 
        2.04         0.46        97.74        49.02        28.37        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2668 
       14.73        26.30        46.98        44.94        42.08         8.09 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       12.59        23.77        27.78        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 
       36.49        16.41        14.60         7.17        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A47A TCGA-44-A47B 
       17.59        23.64        12.66         3.22        15.32         9.44 
TCGA-44-A47F TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
       11.08         3.75         2.50        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-6742 
       35.54        46.72        14.07        32.84        29.46        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5068 
       12.13        29.26        20.48        71.47        14.96        49.28 
TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5941 TCGA-50-5944 
        8.05         8.78        77.88        21.47        18.64        25.12 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6597 TCGA-53-7626 TCGA-53-7813 
       22.55         3.88        11.05        33.37        30.54        13.94 
TCGA-55-1592 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 
       23.05        45.17        32.61         0.79        40.70        15.25 
TCGA-55-6972 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
       48.49         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       24.99        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.32         1.28         1.02         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        6.48         0.69         0.10         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8206 TCGA-55-8301 
        3.02         0.85         0.13         1.55         1.51         1.41 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.36         7.46         0.30         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A494 
        1.61         1.08         1.02         0.95         0.03         0.16 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8398 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        1.55         5.29        14.60        77.10        47.77        19.53 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A470 TCGA-64-1676 TCGA-64-1679 TCGA-64-1680 
       56.68        54.35        39.22        56.81        55.40        37.02 
TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       38.33        28.41        51.25        20.02        18.84        12.66 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        5.69        13.87         6.64         6.12        13.61         5.42 
TCGA-69-7973 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        7.56         2.93        12.56         3.25         2.50         4.21 
TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
        7.04         2.01        52.57        23.38        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 
        4.27         1.32         5.39         1.25        20.42       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 
       27.16        19.27        20.58        35.93        21.86        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       19.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 
      104.15        88.11        31.20        53.33        10.75        32.68 
TCGA-78-8640 TCGA-78-8655 TCGA-86-6562 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
      208.60        77.59        12.36         0.36        13.87        19.43 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
       24.49         0.33         0.79        15.75        10.92        15.85 
TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-86-8673 TCGA-86-8674 
        0.53         0.85         1.12         1.08        14.93        13.28 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 
        0.33         0.99         0.43        10.62        10.16         2.60 
TCGA-91-6840 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-93-7348 
       12.23        27.68         1.15        16.18         6.44         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK 
        6.08         1.12         5.36         0.69         1.32         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        64.60        43.76        25.48         5.95         0.59 
TCGA-97-8172 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8032 
        5.95         4.80         0.49         8.91        12.89         1.45 
TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L9-A443 TCGA-L9-A444 
        5.56         3.72         9.44         7.82         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T6 
        9.37        20.42        11.61        86.14        58.45        58.85 
TCGA-MP-A4T7 TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TH TCGA-MP-A5C7 
        5.49         2.43        10.09        29.42         4.67        48.99 

$`1Q GAIN WILD-TYPE`
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 
        9.96        24.03        47.05        19.00        20.05         8.98 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 
       12.00        21.99        26.01        26.01        24.00        15.02 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        7.36         5.95         8.68       120.79        37.71        35.28 
TCGA-38-4631 TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 
       11.64         4.37        43.50        13.15        24.36        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
       33.30        28.37        10.78         9.93        11.90        21.63 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47G 
       10.68        12.03        18.31         8.55        15.95         4.44 
TCGA-49-4487 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6745 TCGA-49-6761 
       28.11         8.81         5.16        55.89        17.13        11.64 
TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5930 TCGA-50-5932 TCGA-50-5936 
       70.55        25.81        31.04         9.27        35.87         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       15.12        29.00        42.31        25.51        12.16         6.21 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-1595 
        0.72         8.38        34.26         9.21        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6968 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
        2.86         0.07        42.48         0.92         3.88         5.46 
TCGA-55-6985 TCGA-55-6986 TCGA-55-7726 TCGA-55-7728 TCGA-55-7994 TCGA-55-8090 
       40.54        71.05         1.02         0.79         1.02         0.20 
TCGA-55-8091 TCGA-55-8097 TCGA-55-8207 TCGA-55-8299 TCGA-55-8302 TCGA-55-8505 
        1.41         0.49         2.17         7.07         0.72         0.95 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8620 TCGA-55-8621 TCGA-55-A490 TCGA-55-A493 
        0.10         4.80         2.14         3.45         1.58         0.92 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8402 TCGA-62-A46U TCGA-62-A46V 
        4.54        39.95        42.38        47.47        67.96        72.30 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
       40.93        29.92        20.65        39.09        87.98         2.04 
TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 TCGA-67-6216 TCGA-69-7763 
       42.90        28.44         0.99        14.04         4.60        22.68 
TCGA-69-7974 TCGA-69-7978 TCGA-73-4666 TCGA-73-7499 TCGA-78-7146 TCGA-78-7152 
        6.05         2.30        26.27        17.06         5.65        39.48 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 TCGA-78-7540 
       38.50       223.96         8.48        26.53         8.02        28.96 
TCGA-78-7542 TCGA-78-8648 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-7711 
       10.55        39.72        10.55       110.50        27.06        20.71 
TCGA-86-7955 TCGA-86-8073 TCGA-86-8278 TCGA-86-8358 TCGA-86-8668 TCGA-86-8671 
       16.70         0.43        15.65         0.62         1.45         0.56 
TCGA-86-8672 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6836 TCGA-91-6848 
        0.49         1.28        41.33         1.97        13.71         7.36 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-95-7043 
        5.69         1.18         1.45         7.17         9.76         0.07 
TCGA-95-7948 TCGA-97-7552 TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8175 
        4.34        63.52         0.72         3.48         5.36         2.83 
TCGA-97-A4M2 TCGA-99-8025 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-A4AE TCGA-L4-A4E5 
        6.48        14.04        15.06         5.03         9.27         6.97 
TCGA-L4-A4E6 TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T8 TCGA-MP-A4T9 
        2.50        49.35        37.35        86.04         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TF TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       31.20        11.05        14.10        11.15        19.13 

  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
             0.03              0.07 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           208.60            223.96 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
           13.085            12.000 
[1] "0.0 - 208.6 (13.1)" "0.1 - 224.0 (12.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED"   "1Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" "1Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1Q GAIN WILD-TYPE" "1Q GAIN WILD-TYPE"   "1Q GAIN MUTATED" 
[1] "hr=" "1.1"
D2V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  1Q GAIN MUTATED         1       70       78        27        37         33
  1Q GAIN WILD-TYPE       2       43       53        17        28         32
                   vv
clus                STAGE IIIB STAGE IV
  1Q GAIN MUTATED            8       14
  1Q GAIN WILD-TYPE          3        8
D2V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q GAIN MUTATED    85 147  24  12
  1Q GAIN WILD-TYPE  56 108  15   6
D2V4, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  T1              85                56
  T2             147               108
  T3              24                15
  T4              12                 6
                   vv
clus                 N0  N1 N2+N3
  1Q GAIN MUTATED   172  51    37
  1Q GAIN WILD-TYPE 118  34    33
D2V5, multiclass
       clus
vv      1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  N0                172               118
  N1                 51                34
  N2+N3              37                33
                   vv
clus                 M0  M1 M1A M1B  MX
  1Q GAIN MUTATED   184  12   0   1  69
  1Q GAIN WILD-TYPE 130   6   1   2  46
D2V6, multiclass
D2V7, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED   139 130
  1Q GAIN WILD-TYPE 105  81
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED    139  130
  1Q GAIN WILD-TYPE  105   81
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  FEMALE             139               105
  MALE               130                81
D2V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1Q GAIN MUTATED                           10
  1Q GAIN WILD-TYPE                          3
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1Q GAIN MUTATED                                  53
  1Q GAIN WILD-TYPE                                39
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q GAIN MUTATED                                                  172
  1Q GAIN WILD-TYPE                                                120
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1Q GAIN MUTATED                                            0
  1Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1Q GAIN MUTATED                                              12
  1Q GAIN WILD-TYPE                                             5
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1Q GAIN MUTATED                                1
  1Q GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1Q GAIN MUTATED                                    2
  1Q GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1Q GAIN MUTATED                              0                            12
  1Q GAIN WILD-TYPE                            2                             6
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  1Q GAIN MUTATED                                 0
  1Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1Q GAIN MUTATED                                               3
  1Q GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1Q GAIN MUTATED                              4
  1Q GAIN WILD-TYPE                            3
D2V9, multiclass
D2V10, binary
                   cls
clus                  0   1
  1Q GAIN MUTATED    10 259
  1Q GAIN WILD-TYPE  11 175
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q GAIN MUTATED     10  259
  1Q GAIN WILD-TYPE   11  175
     clus
vv    1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  NO               10                11
  YES             259               175
D2V11, continuous
D2V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q GAIN MUTATED   180   7   2  12
  1Q GAIN WILD-TYPE 132   3   2   6
D2V13, multiclass
    clus
vv   1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  R0             180               132
  R1               7                 3
  R2               2                 2
  RX              12                 6

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
D3V1, survival
                   sevent
clus2                 0   1
  2P GAIN MUTATED    98  32
  2P GAIN WILD-TYPE 203  86
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              130               289 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
               32                86 
$`2P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4415 TCGA-05-4417 
        3.98        19.92        45.01        37.02         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-5425 TCGA-05-5428 
        8.98        29.95        30.02        25.02        28.96        22.03 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
        7.36         5.95        35.28        11.64        44.61        14.73 
TCGA-44-2657 TCGA-44-3918 TCGA-44-6779 TCGA-44-7667 TCGA-44-7670 TCGA-44-A47A 
       13.15        34.06        16.41        18.31        29.00        15.32 
TCGA-44-A47G TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4507 TCGA-49-4510 
        4.44        28.11        28.57        12.66         8.81        29.46 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5072 TCGA-50-5946 TCGA-50-6592 
       15.02        12.13        29.26         8.05        22.55        25.51 
TCGA-50-6593 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ 
       11.05        33.37         0.72        34.26        13.94         9.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6970 TCGA-55-6981 
       23.05        38.73        48.62        45.17        15.25        45.34 
TCGA-55-6983 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 TCGA-55-7907 
       60.03         0.59         1.12         0.13         1.32         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7995 TCGA-55-8096 TCGA-55-8510 TCGA-55-8511 
        6.48         0.69         0.16         1.55         7.46         0.30 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8620 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        0.49         1.58         2.14         0.92         0.16         5.29 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46R TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 
       47.47        47.77        56.68        39.09        37.02        87.98 
TCGA-67-3770 TCGA-67-6217 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
        0.99        13.87        13.61         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8255 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 
       12.56         4.21        29.95        15.35         1.32         5.39 
TCGA-78-7145 TCGA-78-7149 TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       27.16        35.93        38.50        40.11        22.29         7.04 
TCGA-78-7163 TCGA-78-7539 TCGA-78-7633 TCGA-78-8640 TCGA-78-8655 TCGA-78-8662 
      223.96        10.75        32.68       208.60        77.59       110.50 
TCGA-86-6562 TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
       12.36        20.71        13.87        16.70        24.49         0.33 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-86-8673 TCGA-91-6829 TCGA-91-6831 
        0.85         1.12         1.08        14.93        41.33        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-95-7043 TCGA-95-7567 
        2.60        13.71        12.23        27.68         0.07         5.36 
TCGA-95-7944 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7938 TCGA-97-8179 TCGA-99-8025 
        0.69         4.04        64.60         0.59         0.49        14.04 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        1.45         5.56         3.72         3.81         0.20         9.37 
TCGA-MN-A4N5 TCGA-MP-A4T9 TCGA-MP-A4TC TCGA-MP-A4TK 
       11.61        41.59         2.43        19.13 

$`2P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       50.07        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       19.00        20.05        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02        15.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       49.02        28.37        26.30         4.37        43.50        46.98 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       37.15        38.24         6.21        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        23.77        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
       21.63        23.18        63.72        32.45        36.49        14.60 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 
       10.68        12.03         7.17        18.87        17.59        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F 
       12.66         3.22         8.55        15.95         9.44        11.08 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
        3.75         2.50        76.21        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       32.84         5.16        55.89        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       15.12        18.64        29.00        25.12        42.31         3.88 
TCGA-50-6594 TCGA-50-6595 TCGA-50-7109 TCGA-53-7626 TCGA-55-5899 TCGA-55-6543 
       12.16         6.21         8.38        30.54         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 
       32.61         0.79        42.48        40.70         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 TCGA-55-6984 
        3.88         5.46         7.76         2.20        32.71        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 
       40.54        71.05        38.47         3.12         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7914 TCGA-55-7994 
        1.02         0.79         1.78         0.62         0.10         1.02 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 
        1.08         0.69         3.02         0.20         1.41         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 
        0.13         0.49         1.51         2.17         7.07         1.41 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.72         0.95         0.36         0.10         4.80         6.97 
TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        1.61         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        0.03         1.55         4.54        39.95        42.38        14.60 
TCGA-62-8399 TCGA-62-A46P TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       77.10        19.53        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 
       40.93        29.92        56.81        20.65        55.40        38.33 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
        2.04        42.90        28.41        51.25        28.44        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 
       18.84        14.04        12.66         5.69         4.60         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 
        6.12        22.68         5.42         2.93         3.25         2.50 
TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 
        7.04         2.01        52.57        23.38        26.27         4.27 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 
        1.25        20.42        17.06       163.10         5.65        19.27 
TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       20.58        21.86        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        5.88       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-8648 TCGA-78-8660 
        8.02        53.33        28.96        10.55        39.72        10.55 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7953 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
       27.06         0.36        19.43         0.43         0.79        15.75 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 
       10.92        15.65        15.85         0.53         0.62         1.45 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.56         0.49        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        1.28        10.62         1.97         7.36         1.15        16.18 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 
        6.44         5.69         1.18         1.45         7.17         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 
        4.18         6.08         1.12         1.32         4.34        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-97-8171 
       63.52        43.76        25.48         5.95         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         5.36         2.83         4.80         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
       12.89        15.06         5.03         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY 
        6.97         2.50        20.42        86.14        58.45        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TA 
       37.35        86.04        58.85         5.49         5.29        31.20 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
       10.09        29.42        11.05         4.67        14.10        11.15 
TCGA-MP-A5C7 
       48.99 

  2P GAIN MUTATED 2P GAIN WILD-TYPE 
             0.07              0.03 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
           223.96            163.10 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
            13.66             12.16 
[1] "0.1 - 224.0 (13.7)" "0.0 - 163.1 (12.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED"   "2P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "2P GAIN MUTATED"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "2P GAIN MUTATED" "2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" "2P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2P GAIN WILD-TYPE"   "2P GAIN MUTATED" "2P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D3V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  2P GAIN MUTATED         1       36       38        16        15         23
  2P GAIN WILD-TYPE       2       77       93        28        50         42
                   vv
clus                STAGE IIIB STAGE IV
  2P GAIN MUTATED            4        8
  2P GAIN WILD-TYPE          7       14
D3V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P GAIN MUTATED    42  77  14   6
  2P GAIN WILD-TYPE  99 178  25  12
D3V4, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  T1              42                99
  T2              77               178
  T3              14                25
  T4               6                12
                   vv
clus                 N0  N1 N2+N3
  2P GAIN MUTATED    83  30    25
  2P GAIN WILD-TYPE 207  55    45
D3V5, multiclass
       clus
vv      2P GAIN MUTATED 2P GAIN WILD-TYPE
  N0                 83               207
  N1                 30                55
  N2+N3              25                45
                   vv
clus                 M0  M1 M1A M1B  MX
  2P GAIN MUTATED    98   7   0   1  34
  2P GAIN WILD-TYPE 216  11   1   2  81
D3V6, multiclass
D3V7, binary
                   cls
clus                  0   1
  2P GAIN MUTATED    78  63
  2P GAIN WILD-TYPE 166 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED     78   63
  2P GAIN WILD-TYPE  166  148
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  FEMALE              78               166
  MALE                63               148
D3V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2P GAIN MUTATED                            3
  2P GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2P GAIN MUTATED                                  33
  2P GAIN WILD-TYPE                                59
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P GAIN MUTATED                                                   89
  2P GAIN WILD-TYPE                                                203
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2P GAIN MUTATED                                            0
  2P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2P GAIN MUTATED                                               5
  2P GAIN WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2P GAIN MUTATED                                2
  2P GAIN WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2P GAIN MUTATED                                    1
  2P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2P GAIN MUTATED                              0                             4
  2P GAIN WILD-TYPE                            2                            14
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  2P GAIN MUTATED                                 0
  2P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2P GAIN MUTATED                                               2
  2P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2P GAIN MUTATED                              2
  2P GAIN WILD-TYPE                            5
D3V9, multiclass
D3V10, binary
                   cls
clus                  0   1
  2P GAIN MUTATED     5 136
  2P GAIN WILD-TYPE  16 298
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P GAIN MUTATED      5  136
  2P GAIN WILD-TYPE   16  298
     clus
vv    2P GAIN MUTATED 2P GAIN WILD-TYPE
  NO                5                16
  YES             136               298
D3V11, continuous
D3V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P GAIN MUTATED   100   5   2   5
  2P GAIN WILD-TYPE 212   5   2  13
D3V13, multiclass
    clus
vv   2P GAIN MUTATED 2P GAIN WILD-TYPE
  R0             100               212
  R1               5                 5
  R2               2                 2
  RX               5                13

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
D4V1, survival
                   sevent
clus2                 0   1
  2Q GAIN MUTATED    85  30
  2Q GAIN WILD-TYPE 216  88
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              115               304 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
               30                88 
$`2Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4405 TCGA-05-4415 
        3.98        19.92        45.01        37.02        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4432 TCGA-05-5425 TCGA-05-5428 
       14.93         8.98        30.02        25.02        28.96        22.03 
TCGA-35-4122 TCGA-35-5375 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2657 
        7.36         8.68        35.28        44.61        14.73        13.15 
TCGA-44-3918 TCGA-44-7662 TCGA-44-7670 TCGA-44-A47A TCGA-44-A47G TCGA-49-4488 
       34.06         7.17        29.00        15.32         4.44        28.57 
TCGA-49-4490 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-6742 TCGA-49-6744 
       12.66        14.07         8.81        29.46        15.02        29.26 
TCGA-50-5072 TCGA-50-6592 TCGA-50-6593 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 
        8.05        25.51        11.05        33.37         0.72        34.26 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6970 
       13.94         9.21        23.05        38.73        45.17        15.25 
TCGA-55-6975 TCGA-55-6983 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 
        3.88        60.03         0.59         1.12         0.13         1.32 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7995 TCGA-55-8096 
        1.02         0.53         6.48         0.69         0.16         1.55 
TCGA-55-8207 TCGA-55-8510 TCGA-55-8514 TCGA-55-8615 TCGA-55-8620 TCGA-55-A493 
        2.17         7.46         6.97         0.49         2.14         0.92 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8402 TCGA-62-A46R TCGA-62-A471 TCGA-64-1680 
        0.16         5.29        47.47        56.68        40.93        37.02 
TCGA-67-3770 TCGA-67-3771 TCGA-67-6217 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 
        0.99        20.02        13.87        13.61         7.56         6.05 
TCGA-69-7978 TCGA-69-7980 TCGA-69-8255 TCGA-73-4662 TCGA-73-4675 TCGA-78-7149 
        2.30        12.56         4.21        29.95         1.32        35.93 
TCGA-78-7155 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 TCGA-78-7220 
       38.50        22.29       104.15       223.96        88.11        26.53 
TCGA-78-7539 TCGA-78-7633 TCGA-78-8640 TCGA-78-8655 TCGA-78-8662 TCGA-86-6562 
       10.75        32.68       208.60        77.59       110.50        12.36 
TCGA-86-7713 TCGA-86-8055 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-86-8673 
       13.87         0.33         0.85         1.12         1.08        14.93 
TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-95-7043 
       41.33         2.60        13.71        12.23        27.68         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-97-7547 TCGA-97-7938 TCGA-97-8179 TCGA-99-8025 
        5.36         0.69        64.60         0.59         0.49        14.04 
TCGA-99-8033 TCGA-J2-8194 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4T9 
        5.56         3.72         0.20         9.37        11.61        41.59 
TCGA-MP-A4TC 
        2.43 

$`2Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       50.07        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4403 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       19.00        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02        15.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        2.04         0.46         5.95        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       49.02        28.37        11.64        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        37.15        38.24         6.21        23.74        33.30 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       28.37        12.59        23.77        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90        21.63        23.18        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-7669 
       16.41        14.60        10.68        12.03        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
       17.59        23.64        12.66         3.22         8.55        15.95 
TCGA-44-A47B TCGA-44-A47F TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        9.44        11.08         3.75         2.50        76.21        28.11 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       35.54        46.72        32.84         5.16        55.89        12.13 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       17.13        11.64        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        31.04        49.28         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6594 TCGA-50-6595 
       25.12        22.55        42.31         3.88        12.16         6.21 
TCGA-50-7109 TCGA-53-7626 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
        8.38        30.54        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 
        0.79        42.48        40.70         0.92        48.49         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 
        7.76         2.20        45.34        32.71        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
       71.05        38.47         3.12         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 TCGA-55-8087 
        1.78         0.62         0.10         1.02         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        3.02         0.20         1.41         0.85         0.13         0.49 
TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        1.51         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 
        0.30         0.10         4.80         1.58         1.61         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A4DF 
        1.08         1.02         0.95         1.58         0.03         1.55 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-A46O 
        4.54        39.95        42.38        14.60        77.10        47.77 
TCGA-62-A46P TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A472 
       19.53        54.35        67.96        72.30        39.22        29.92 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        39.09        55.40        38.33        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 
        2.04        42.90        28.41        51.25        28.44        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
       14.04        12.66         5.69         4.60         6.64         6.12 
TCGA-69-7763 TCGA-69-7765 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-A59K 
       22.68         5.42         2.93         3.25         2.50         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        26.27        15.35         4.27 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        5.39         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7166 
       19.50        32.09         5.88        40.11         7.04         8.48 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-8648 
       31.20         8.02        53.33        28.96        10.55        39.72 
TCGA-78-8660 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 
       10.55        27.06         0.36        20.71        19.43        16.70 
TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
       24.49         0.43         0.79        15.75        10.92        15.65 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
       15.85         0.53         0.62         1.45         0.56         0.49 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       13.28         0.33         0.99         0.43         1.28        10.62 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
        1.97        10.16         7.36         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        5.69         1.18         1.45         7.17         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        6.08         1.12         1.32         4.34         4.04        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7941 TCGA-97-8171 
       63.52        43.76        25.48         5.95         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         5.36         2.83         4.80         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE 
       12.89        15.06         1.45         5.03         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N4 TCGA-MP-A4SV 
        7.82         6.97         2.50         3.81        20.42        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 
       58.45        49.35        37.35        86.04        58.85         5.49 
TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
        5.29        31.20        10.09        29.42        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        11.15        19.13        48.99 

  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
             0.07              0.03 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
           223.96            163.10 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
            12.66             12.66 
[1] "0.1 - 224.0 (12.7)" "0.0 - 163.1 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED"   "2Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "2Q GAIN MUTATED"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE"   "2Q GAIN MUTATED" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" "2Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D4V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  2Q GAIN MUTATED         1       32       35        14        12         22
  2Q GAIN WILD-TYPE       2       81       96        30        53         43
                   vv
clus                STAGE IIIB STAGE IV
  2Q GAIN MUTATED            4        7
  2Q GAIN WILD-TYPE          7       15
D4V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q GAIN MUTATED    37  71  12   5
  2Q GAIN WILD-TYPE 104 184  27  13
D4V4, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  T1              37               104
  T2              71               184
  T3              12                27
  T4               5                13
                   vv
clus                 N0  N1 N2+N3
  2Q GAIN MUTATED    75  27    23
  2Q GAIN WILD-TYPE 215  58    47
D4V5, multiclass
       clus
vv      2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  N0                 75               215
  N1                 27                58
  N2+N3              23                47
                   vv
clus                 M0  M1 M1A M1B  MX
  2Q GAIN MUTATED    89   6   0   1  30
  2Q GAIN WILD-TYPE 225  12   1   2  85
D4V6, multiclass
D4V7, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED    66  61
  2Q GAIN WILD-TYPE 178 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED     66   61
  2Q GAIN WILD-TYPE  178  150
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  FEMALE              66               178
  MALE                61               150
D4V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2Q GAIN MUTATED                            3
  2Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2Q GAIN MUTATED                                  34
  2Q GAIN WILD-TYPE                                58
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q GAIN MUTATED                                                   76
  2Q GAIN WILD-TYPE                                                216
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2Q GAIN MUTATED                                            0
  2Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2Q GAIN MUTATED                                               5
  2Q GAIN WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2Q GAIN MUTATED                                0
  2Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2Q GAIN MUTATED                                    0
  2Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2Q GAIN MUTATED                              0                             5
  2Q GAIN WILD-TYPE                            2                            13
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  2Q GAIN MUTATED                                 0
  2Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2Q GAIN MUTATED                                               2
  2Q GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2Q GAIN MUTATED                              2
  2Q GAIN WILD-TYPE                            5
D4V9, multiclass
D4V10, binary
                   cls
clus                  0   1
  2Q GAIN MUTATED     5 122
  2Q GAIN WILD-TYPE  16 312
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q GAIN MUTATED      5  122
  2Q GAIN WILD-TYPE   16  312
     clus
vv    2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  NO                5                16
  YES             122               312
D4V11, continuous
D4V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q GAIN MUTATED    93   3   2   4
  2Q GAIN WILD-TYPE 219   7   2  14
D4V13, multiclass
    clus
vv   2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  R0              93               219
  R1               3                 7
  R2               2                 2
  RX               4                14

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
D5V1, survival
                   sevent
clus2                 0   1
  3P GAIN MUTATED    25   9
  3P GAIN WILD-TYPE 276 109
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               34               385 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                9               109 
$`3P GAIN MUTATED`
TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4434 TCGA-05-5428 TCGA-35-5375 
       29.95        30.02        26.01        15.02        22.03         8.68 
TCGA-44-A47B TCGA-49-4487 TCGA-49-4488 TCGA-49-4507 TCGA-49-6743 TCGA-50-5946 
        9.44        28.11        28.57         8.81        12.13        22.55 
TCGA-53-A4EZ TCGA-55-6972 TCGA-55-7903 TCGA-55-7995 TCGA-64-1677 TCGA-64-5775 
        9.21        48.49         0.62         0.16        20.65         2.04 
TCGA-69-7760 TCGA-69-7974 TCGA-69-7978 TCGA-69-A59K TCGA-73-4676 TCGA-78-7143 
        6.64         6.05         2.30         7.04         5.39       163.10 
TCGA-78-7145 TCGA-78-8662 TCGA-86-7711 TCGA-86-7953 TCGA-86-8074 TCGA-86-8075 
       27.16       110.50        20.71        19.43         0.79        15.75 
TCGA-91-6828 TCGA-J2-A4AD TCGA-L9-A443 TCGA-L9-A444 
       10.62         9.44         3.81         0.20 

$`3P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
        2.96        14.93         8.98        12.00        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        24.00        15.02         4.96        28.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 
        0.99         2.04         0.46         7.36         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       33.30        28.37        12.59        23.77        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        29.00        17.59        23.64        12.66 
TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G 
        3.22         8.55        15.95        15.32        11.08         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        3.75         2.50        76.21        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84        29.46         5.16        55.89        15.02 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       29.26        17.13        11.64        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       18.64        29.00        25.12        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       34.26        30.54        13.94        23.05        38.73        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 
        0.53         6.48         0.69         0.10         1.02         1.08 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 
        0.69         3.02         0.20         1.41         0.85         0.13 
TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 
        1.55         0.49         1.51         2.17         7.07         1.41 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.72         0.95         0.36         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 
        0.92         0.16         1.55         5.29         4.54        39.95 
TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P 
       42.38        14.60        77.10        47.47        47.77        19.53 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 
       56.68        54.35        67.96        72.30        39.22        40.93 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       29.92        56.81        39.09        55.40        37.02        38.33 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       87.98        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         6.12        22.68        13.61         5.42         7.56 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        2.93        12.56         3.25         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 TCGA-78-7147 
        1.32         1.25        20.42        17.06         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 
      208.60        39.72        77.59        10.55        27.06        12.36 
TCGA-86-7701 TCGA-86-7713 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
        0.36        13.87        16.70        24.49         0.33         0.43 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
       10.92        15.65        15.85         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 
        1.12         1.45         1.08         0.56         0.49        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6829 
       13.28         0.33         0.99         0.43         1.28        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 
        1.97        10.16         2.60        13.71        12.23        27.68 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 
        7.36         1.15        16.18         6.44         5.69         1.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        1.45         7.17         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        0.07         5.36         0.69         1.32         4.34         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        64.60        63.52        43.76        25.48         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 
        4.80         0.49         6.48         8.91        12.89        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE 
       15.06         1.45         5.56         5.03         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 
        7.82         6.97         2.50         9.37        20.42        11.61 
TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 
       86.14        58.45        49.35        37.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD 
        5.49         5.29        41.59        31.20         2.43        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       29.42        11.05         4.67        14.10        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  3P GAIN MUTATED 3P GAIN WILD-TYPE 
             0.16              0.03 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           163.10            223.96 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
           11.375            12.660 
[1] "0.2 - 163.1 (11.4)" "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED"   "3P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" "3P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE"   "3P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "3P GAIN MUTATED" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D5V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  3P GAIN MUTATED         0       10        7         5         6          6
  3P GAIN WILD-TYPE       3      103      124        39        59         59
                   vv
clus                STAGE IIIB STAGE IV
  3P GAIN MUTATED            0        2
  3P GAIN WILD-TYPE         11       20
D5V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P GAIN MUTATED    13  16   4   3
  3P GAIN WILD-TYPE 128 239  35  15
D5V4, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  T1              13               128
  T2              16               239
  T3               4                35
  T4               3                15
                   vv
clus                 N0  N1 N2+N3
  3P GAIN MUTATED    21  11     4
  3P GAIN WILD-TYPE 269  74    66
D5V5, multiclass
       clus
vv      3P GAIN MUTATED 3P GAIN WILD-TYPE
  N0                 21               269
  N1                 11                74
  N2+N3               4                66
                   vv
clus                 M0  M1 M1A M1B  MX
  3P GAIN MUTATED    24   2   0   0  10
  3P GAIN WILD-TYPE 290  16   1   3 105
D5V6, multiclass
D5V7, binary
                   cls
clus                  0   1
  3P GAIN MUTATED    19  17
  3P GAIN WILD-TYPE 225 194
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED     19   17
  3P GAIN WILD-TYPE  225  194
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  FEMALE              19               225
  MALE                17               194
D5V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3P GAIN MUTATED                            2
  3P GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3P GAIN MUTATED                                  10
  3P GAIN WILD-TYPE                                82
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P GAIN MUTATED                                                   21
  3P GAIN WILD-TYPE                                                271
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3P GAIN MUTATED                                            0
  3P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3P GAIN MUTATED                                               1
  3P GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3P GAIN MUTATED                                1
  3P GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3P GAIN MUTATED                                    0
  3P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3P GAIN MUTATED                              0                             1
  3P GAIN WILD-TYPE                            2                            17
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  3P GAIN MUTATED                                 0
  3P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3P GAIN MUTATED                                               0
  3P GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3P GAIN MUTATED                              0
  3P GAIN WILD-TYPE                            7
D5V9, multiclass
D5V10, binary
                   cls
clus                  0   1
  3P GAIN MUTATED     3  33
  3P GAIN WILD-TYPE  18 401
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P GAIN MUTATED      3   33
  3P GAIN WILD-TYPE   18  401
     clus
vv    3P GAIN MUTATED 3P GAIN WILD-TYPE
  NO                3                18
  YES              33               401
D5V11, continuous
D5V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P GAIN MUTATED    23   2   1   4
  3P GAIN WILD-TYPE 289   8   3  14
D5V13, multiclass
    clus
vv   3P GAIN MUTATED 3P GAIN WILD-TYPE
  R0              23               289
  R1               2                 8
  R2               1                 3
  RX               4                14

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
D6V1, survival
                   sevent
clus2                 0   1
  3Q GAIN MUTATED    52  18
  3Q GAIN WILD-TYPE 249 100
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               70               349 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               18               100 
$`3Q GAIN MUTATED`
TCGA-05-4382 TCGA-05-4389 TCGA-05-4402 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 
       19.92        45.01         8.02        29.95        30.02        26.01 
TCGA-05-4434 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-35-5375 TCGA-38-4626 
       15.02        28.96        22.03         0.99         8.68       120.79 
TCGA-44-2662 TCGA-44-2668 TCGA-44-3918 TCGA-44-5643 TCGA-44-6145 TCGA-44-6147 
       42.08         8.09        34.06        33.30        10.78        27.78 
TCGA-44-7660 TCGA-44-7670 TCGA-44-A47B TCGA-49-4487 TCGA-49-4488 TCGA-49-4507 
       10.68        29.00         9.44        28.11        28.57         8.81 
TCGA-49-6743 TCGA-50-5072 TCGA-50-5931 TCGA-50-5941 TCGA-50-5946 TCGA-53-A4EZ 
       12.13         8.05         8.78        18.64        22.55         9.21 
TCGA-55-1594 TCGA-55-6972 TCGA-55-6984 TCGA-55-7726 TCGA-55-7903 TCGA-55-7995 
       38.73        48.49        24.99         1.02         0.62         0.16 
TCGA-55-8085 TCGA-55-A490 TCGA-62-A46O TCGA-64-1679 TCGA-64-5815 TCGA-69-7760 
        1.08         1.58        47.77        55.40        28.44         6.64 
TCGA-69-7978 TCGA-69-7980 TCGA-69-A59K TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 
        2.30        12.56         7.04         5.39        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7154 TCGA-78-8662 TCGA-86-7711 TCGA-86-7953 
       27.16         5.65        19.50       110.50        20.71        19.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8278 TCGA-86-8358 TCGA-86-8669 TCGA-86-8673 
        0.79        15.75        15.65         0.62         1.08        14.93 
TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-95-7043 TCGA-95-7947 TCGA-J2-A4AD 
       10.62         1.97         2.60         0.07         1.32         9.44 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MP-A4SV TCGA-MP-A4TF 
        3.81         0.20        86.14        11.05 

$`3Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       47.05        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       12.00        21.99        26.01        25.02        25.02        24.00 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       15.02         4.96         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       97.74        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       13.15        44.94        24.36        42.77         3.19        37.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
       38.24         6.21        23.74        28.37        12.59        23.77 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41        14.60        12.03         7.17        18.31 
TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       18.87        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.95        15.32        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       76.21        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        55.89        15.02        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       11.64        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       31.04        49.28         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
        8.45        15.12        29.00        25.12        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1595 
        8.38        34.26        30.54        13.94        23.05        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 
        2.20        45.34        32.71        60.03        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 
        1.28         1.02         0.79         1.78         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.69         0.10         1.02         0.69         3.02         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 
        1.41         0.85         0.13         1.55         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        2.17         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        0.95         0.03         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 
        4.54        39.95        42.38        14.60        77.10        47.47 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       40.93        29.92        56.81        20.65        39.09        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       38.33        87.98         2.04        42.90        28.41        51.25 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        4.60        13.87         6.12        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        7.56         6.05         2.93         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-73-7498 TCGA-78-7147 TCGA-78-7148 
        4.27         1.32         1.25        20.42        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        39.48        24.99        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       10.75        28.96        10.55        32.68       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7713 
       77.59        10.55        27.06        12.36         0.36        13.87 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8076 TCGA-86-8279 
       16.70        24.49         0.33         0.43        10.92        15.85 
TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
        0.53         0.85         1.12         1.45         0.56         0.49 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6829 
       13.28         0.33         0.99         0.43         1.28        41.33 
TCGA-91-6831 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
       10.16        13.71        12.23        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
       16.18         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 
        9.76         4.18         6.08         1.12         5.36         0.69 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.34         4.04        31.66        64.60        63.52        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       25.48         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 
        5.36         2.83         4.80         0.49         6.48         8.91 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
       12.89        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-MN-A4N1 
        3.72         9.27         7.82         6.97         2.50         9.37 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       20.42        11.61        58.45        49.35        37.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC 
       58.85         5.49         5.29        41.59        31.20         2.43 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       10.09        29.42         4.67        14.10        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
             0.07              0.03 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           163.10            223.96 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
           13.745            12.660 
[1] "0.1 - 163.1 (13.7)" "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "3Q GAIN MUTATED"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED"   "3Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3Q GAIN WILD-TYPE"   "3Q GAIN MUTATED" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" "3Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D6V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  3Q GAIN MUTATED         1       21       19        10        10         11
  3Q GAIN WILD-TYPE       2       92      112        34        55         54
                   vv
clus                STAGE IIIB STAGE IV
  3Q GAIN MUTATED            0        3
  3Q GAIN WILD-TYPE         11       19
D6V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q GAIN MUTATED    27  39   6   2
  3Q GAIN WILD-TYPE 114 216  33  16
D6V4, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  T1              27               114
  T2              39               216
  T3               6                33
  T4               2                16
                   vv
clus                 N0  N1 N2+N3
  3Q GAIN MUTATED    46  17    10
  3Q GAIN WILD-TYPE 244  68    60
D6V5, multiclass
       clus
vv      3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  N0                 46               244
  N1                 17                68
  N2+N3              10                60
                   vv
clus                 M0  M1 M1A M1B  MX
  3Q GAIN MUTATED    56   3   0   0  16
  3Q GAIN WILD-TYPE 258  15   1   3  99
D6V6, multiclass
D6V7, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED    40  35
  3Q GAIN WILD-TYPE 204 176
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED     40   35
  3Q GAIN WILD-TYPE  204  176
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  FEMALE              40               204
  MALE                35               176
D6V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3Q GAIN MUTATED                            2
  3Q GAIN WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3Q GAIN MUTATED                                  18
  3Q GAIN WILD-TYPE                                74
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q GAIN MUTATED                                                   50
  3Q GAIN WILD-TYPE                                                242
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3Q GAIN MUTATED                                            0
  3Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3Q GAIN MUTATED                                               2
  3Q GAIN WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3Q GAIN MUTATED                                1
  3Q GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3Q GAIN MUTATED                                    0
  3Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3Q GAIN MUTATED                              0                             2
  3Q GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  3Q GAIN MUTATED                                 0
  3Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3Q GAIN MUTATED                                               0
  3Q GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3Q GAIN MUTATED                              0
  3Q GAIN WILD-TYPE                            7
D6V9, multiclass
D6V10, binary
                   cls
clus                  0   1
  3Q GAIN MUTATED     4  71
  3Q GAIN WILD-TYPE  17 363
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q GAIN MUTATED      4   71
  3Q GAIN WILD-TYPE   17  363
     clus
vv    3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  NO                4                17
  YES              71               363
D6V11, continuous
D6V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q GAIN MUTATED    51   2   2   4
  3Q GAIN WILD-TYPE 261   8   2  14
D6V13, multiclass
    clus
vv   3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  R0              51               261
  R1               2                 8
  R2               2                 2
  RX               4                14

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
D7V1, survival
                   sevent
clus2                 0   1
  4P GAIN MUTATED    43  25
  4P GAIN WILD-TYPE 258  93
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               68               351 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               25                93 
$`4P GAIN MUTATED`
TCGA-05-4432 TCGA-05-5423 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-44-2656 
       25.02         4.96        49.02        28.37        11.64        46.98 
TCGA-44-2662 TCGA-44-4112 TCGA-44-5645 TCGA-44-6775 TCGA-44-7661 TCGA-44-A4SU 
       42.08        23.74        12.59        23.18        12.03         2.50 
TCGA-49-4488 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-7109 TCGA-53-7624 
       28.57         3.88        25.51        12.16         8.38        34.26 
TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-6712 TCGA-55-7573 TCGA-55-8089 
       13.94        38.73        48.62         0.79         0.13         3.02 
TCGA-55-8091 TCGA-55-8094 TCGA-55-8096 TCGA-55-8302 TCGA-55-A490 TCGA-55-A492 
        1.41         0.13         1.55         0.72         1.58         0.03 
TCGA-55-A493 TCGA-62-8402 TCGA-62-A46O TCGA-62-A471 TCGA-64-1676 TCGA-64-1680 
        0.92        47.47        47.77        40.93        56.81        37.02 
TCGA-64-1681 TCGA-69-7980 TCGA-69-8253 TCGA-78-7143 TCGA-78-7145 TCGA-78-7150 
       38.33        12.56         3.25       163.10        27.16        21.86 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-78-7167 TCGA-78-7220 
       24.99        19.50        38.50       223.96        88.11        26.53 
TCGA-78-7535 TCGA-78-7539 TCGA-78-7542 TCGA-86-7953 TCGA-86-7955 TCGA-86-8278 
       31.20        10.75        10.55        19.43        16.70        15.65 
TCGA-86-8279 TCGA-86-8669 TCGA-86-A456 TCGA-91-6836 TCGA-91-6848 TCGA-95-7948 
       15.85         1.08         0.33        13.71         7.36         4.34 
TCGA-97-7937 TCGA-97-8179 TCGA-MN-A4N5 TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T4 
        5.95         0.49        11.61        58.45        49.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4TF 
       58.85        11.05 

$`4P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 
       21.99        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        44.61        14.73        26.30         4.37        43.50 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        44.94        24.36        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 
       37.15        38.24        34.06         6.21        33.30        28.37 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       23.77        10.78         9.93        27.78        11.90        21.63 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41        14.60        10.68 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        7.17        18.31        18.87        29.00        17.59        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       12.66         3.22         8.55        15.95        15.32         9.44 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       11.08         4.44         3.75        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       11.64        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       25.12        22.55        42.31        11.05         6.21        33.37 
TCGA-50-6673 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 
        0.72        30.54         9.21        23.05        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        0.59         1.12         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.69         0.10         1.02         0.16         1.08         0.69 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.20         0.85         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        1.41         0.95         0.36         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A494 TCGA-55-A4DF 
        3.45         1.08         1.02         0.95         0.16         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 
        5.29         4.54        39.95        42.38        14.60        77.10 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 
       29.92        20.65        39.09        55.40        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        6.64         6.12        22.68        13.61         5.42         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        6.05         2.30         2.93         2.50         4.21         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        4.27         1.32         5.39         1.25        20.42        17.06 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7156 
        5.65        19.27        20.58        35.93        39.48        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
        8.02        53.33        28.96        32.68       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 
       77.59        10.55       110.50        27.06        12.36         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
       20.71        13.87        24.49         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
       15.75        10.92         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A4D0 
        1.45         0.56         0.49        14.93        13.28         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.43         1.28        10.62        41.33         1.97        10.16 
TCGA-91-6835 TCGA-91-6840 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
        2.60        12.23        27.68         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        5.69         1.18         1.45         7.17         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.04        31.66        64.60        63.52        43.76        25.48 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        4.80         6.48         8.91        12.89        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        7.82         6.97         2.50         3.81         0.20         9.37 
TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4T2 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 
       20.42        86.14        37.35         5.49         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TH TCGA-MP-A4TI 
       31.20         2.43        10.09        29.42         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.15        19.13        48.99 

  4P GAIN MUTATED 4P GAIN WILD-TYPE 
             0.03              0.07 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           223.96            208.60 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
           16.275            12.130 
[1] "0.0 - 224.0 (16.3)" "0.1 - 208.6 (12.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "4P GAIN MUTATED"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE"   "4P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "4P GAIN MUTATED"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4P GAIN WILD-TYPE"   "4P GAIN MUTATED" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" "4P GAIN WILD-TYPE" 
[1] "hr=" "1"  
D7V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  4P GAIN MUTATED         2       14       26         5        13          8
  4P GAIN WILD-TYPE       1       99      105        39        52         57
                   vv
clus                STAGE IIIB STAGE IV
  4P GAIN MUTATED            1        6
  4P GAIN WILD-TYPE         10       16
D7V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P GAIN MUTATED    18  50   5   2
  4P GAIN WILD-TYPE 123 205  34  16
D7V4, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  T1              18               123
  T2              50               205
  T3               5                34
  T4               2                16
                   vv
clus                 N0  N1 N2+N3
  4P GAIN MUTATED    52  13     9
  4P GAIN WILD-TYPE 238  72    61
D7V5, multiclass
       clus
vv      4P GAIN MUTATED 4P GAIN WILD-TYPE
  N0                 52               238
  N1                 13                72
  N2+N3               9                61
                   vv
clus                 M0  M1 M1A M1B  MX
  4P GAIN MUTATED    51   5   0   1  17
  4P GAIN WILD-TYPE 263  13   1   2  98
D7V6, multiclass
D7V7, binary
                   cls
clus                  0   1
  4P GAIN MUTATED    39  36
  4P GAIN WILD-TYPE 205 175
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED     39   36
  4P GAIN WILD-TYPE  205  175
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  FEMALE              39               205
  MALE                36               175
D7V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4P GAIN MUTATED                            1
  4P GAIN WILD-TYPE                         12
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4P GAIN MUTATED                                   9
  4P GAIN WILD-TYPE                                83
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P GAIN MUTATED                                                   59
  4P GAIN WILD-TYPE                                                233
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4P GAIN MUTATED                                            0
  4P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4P GAIN MUTATED                                               2
  4P GAIN WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4P GAIN MUTATED                                1
  4P GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4P GAIN MUTATED                                    1
  4P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4P GAIN MUTATED                              0                             2
  4P GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  4P GAIN MUTATED                                 0
  4P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4P GAIN MUTATED                                               0
  4P GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4P GAIN MUTATED                              0
  4P GAIN WILD-TYPE                            7
D7V9, multiclass
D7V10, binary
                   cls
clus                  0   1
  4P GAIN MUTATED     2  73
  4P GAIN WILD-TYPE  19 361
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P GAIN MUTATED      2   73
  4P GAIN WILD-TYPE   19  361
     clus
vv    4P GAIN MUTATED 4P GAIN WILD-TYPE
  NO                2                19
  YES              73               361
D7V11, continuous
D7V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P GAIN MUTATED    53   1   0   3
  4P GAIN WILD-TYPE 259   9   4  15
D7V13, multiclass
    clus
vv   4P GAIN MUTATED 4P GAIN WILD-TYPE
  R0              53               259
  R1               1                 9
  R2               0                 4
  RX               3                15

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
D8V1, survival
                   sevent
clus2                 0   1
  4Q GAIN MUTATED    25  10
  4Q GAIN WILD-TYPE 276 108
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               35               384 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               10               108 
$`4Q GAIN MUTATED`
TCGA-38-4628 TCGA-38-4629 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-6775 
       49.02        28.37        46.98        44.94        42.08        23.18 
TCGA-44-7661 TCGA-50-6591 TCGA-50-6594 TCGA-55-6712 TCGA-55-8089 TCGA-55-8091 
       12.03         3.88        12.16         0.79         3.02         1.41 
TCGA-55-8096 TCGA-55-8615 TCGA-55-A493 TCGA-62-8402 TCGA-62-A471 TCGA-64-1676 
        1.55         0.49         0.92        47.47        40.93        56.81 
TCGA-64-1680 TCGA-69-7980 TCGA-69-8253 TCGA-78-7143 TCGA-78-7154 TCGA-78-7163 
       37.02        12.56         3.25       163.10        19.50       223.96 
TCGA-78-7542 TCGA-86-7953 TCGA-86-8278 TCGA-86-A456 TCGA-91-6836 TCGA-91-6848 
       10.55        19.43        15.65         0.33        13.71         7.36 
TCGA-95-7948 TCGA-MN-A4N5 TCGA-MP-A4SY TCGA-MP-A4T4 TCGA-MP-A4T6 
        4.34        11.61        49.35        86.04        58.85 

$`4Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
      120.79        37.71        35.28        11.64        44.61        14.73 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 
       26.30         4.37        43.50        13.15        24.36        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       23.74        33.30        28.37        12.59        23.77        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93        27.78        11.90        21.63        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41        14.60        10.68         7.17        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        29.00        17.59        23.64        12.66         3.22 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G 
        8.55        15.95        15.32         9.44        11.08         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       11.64        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       25.12        22.55        42.31        25.51        11.05         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       33.37         0.72         8.38        34.26        30.54        13.94 
TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
        9.21        23.05        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 
        6.48         0.69         0.10         1.02         0.16         1.08 
TCGA-55-8087 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8206 
        0.69         0.20         0.85         0.13         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        2.17         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 
        7.46         0.30         0.10         4.80         6.97         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 
        1.58         0.03         0.16         1.55         5.29         4.54 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
       39.95        42.38        14.60        77.10        47.77        19.53 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A472 
       56.68        54.35        67.96        72.30        39.22        29.92 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        55.40        38.33        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        6.64         6.12        22.68        13.61         5.42         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        6.05         2.30         2.93         2.50         4.21         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        4.27         1.32         5.39         1.25        20.42        17.06 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       39.48        24.99        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
       22.29         7.04       104.15         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
       31.20         8.02        53.33        10.75        28.96        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
      208.60        39.72        77.59        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 TCGA-86-8054 
       12.36         0.36        20.71        13.87        16.70        24.49 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
        0.33         0.43         0.79        15.75        10.92        15.85 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A4D0 TCGA-86-A4P7 
        0.56         0.49        14.93        13.28         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28        10.62        41.33         1.97        10.16         2.60 
TCGA-91-6840 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
       12.23        27.68         1.15        16.18         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        1.18         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK 
        1.12         0.07         5.36         0.69         1.32         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
       31.66        64.60        63.52        43.76        25.48         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 
        4.80         0.49         6.48         8.91        12.89        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T2 TCGA-MP-A4T7 
        9.37        20.42        86.14        58.45        37.35         5.49 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE 
        5.29        41.59        31.20         2.43        10.09        29.42 
TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.05         4.67        14.10        11.15        19.13        48.99 

  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
             0.33              0.03 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           223.96            208.60 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
           15.650            12.625 
[1] "0.3 - 224.0 (15.7)" "0.0 - 208.6 (12.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED"   "4Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "4Q GAIN MUTATED"   "4Q GAIN MUTATED" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" "4Q GAIN WILD-TYPE" 
[1] "hr=" "1.7"
D8V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  4Q GAIN MUTATED         1        5       17         1        10          6
  4Q GAIN WILD-TYPE       2      108      114        43        55         59
                   vv
clus                STAGE IIIB STAGE IV
  4Q GAIN MUTATED            0        2
  4Q GAIN WILD-TYPE         11       20
D8V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q GAIN MUTATED     9  28   5   0
  4Q GAIN WILD-TYPE 132 227  34  18
D8V4, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  T1               9               132
  T2              28               227
  T3               5                34
  T4               0                18
                   vv
clus                 N0  N1 N2+N3
  4Q GAIN MUTATED    26   9     7
  4Q GAIN WILD-TYPE 264  76    63
D8V5, multiclass
       clus
vv      4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  N0                 26               264
  N1                  9                76
  N2+N3               7                63
                   vv
clus                 M0  M1 M1A M1B  MX
  4Q GAIN MUTATED    31   2   0   0   9
  4Q GAIN WILD-TYPE 283  16   1   3 106
D8V6, multiclass
D8V7, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED    21  21
  4Q GAIN WILD-TYPE 223 190
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED     21   21
  4Q GAIN WILD-TYPE  223  190
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  FEMALE              21               223
  MALE                21               190
D8V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4Q GAIN MUTATED                            0
  4Q GAIN WILD-TYPE                         13
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4Q GAIN MUTATED                                   4
  4Q GAIN WILD-TYPE                                88
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q GAIN MUTATED                                                   35
  4Q GAIN WILD-TYPE                                                257
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4Q GAIN MUTATED                                            0
  4Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4Q GAIN MUTATED                                               1
  4Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4Q GAIN MUTATED                                0
  4Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4Q GAIN MUTATED                                    0
  4Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4Q GAIN MUTATED                              0                             1
  4Q GAIN WILD-TYPE                            2                            17
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  4Q GAIN MUTATED                                 0
  4Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4Q GAIN MUTATED                                               1
  4Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4Q GAIN MUTATED                              0
  4Q GAIN WILD-TYPE                            7
D8V9, multiclass
D8V10, binary
                   cls
clus                  0   1
  4Q GAIN MUTATED     1  41
  4Q GAIN WILD-TYPE  20 393
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q GAIN MUTATED      1   41
  4Q GAIN WILD-TYPE   20  393
     clus
vv    4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  NO                1                20
  YES              41               393
D8V11, continuous
D8V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q GAIN MUTATED    30   0   0   2
  4Q GAIN WILD-TYPE 282  10   4  16
D8V13, multiclass
    clus
vv   4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  R0              30               282
  R1               0                10
  R2               0                 4
  RX               2                16

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
D9V1, survival
                   sevent
clus2                 0   1
  5P GAIN MUTATED   165  64
  5P GAIN WILD-TYPE 136  54
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              229               190 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
               64                54 
$`5P GAIN MUTATED`
TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4422 TCGA-05-4424 
       47.05         8.02        20.05         2.96        12.00        30.02 
TCGA-05-4426 TCGA-05-4430 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-35-3615 
       26.01        25.02         4.96        28.96        22.03         0.46 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 
        8.68       120.79        37.71        49.02        28.37        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       44.61        14.73        26.30        46.98        13.15        44.94 
TCGA-44-2662 TCGA-44-2668 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
       42.08         8.09        38.24         6.21        23.74        28.37 
TCGA-44-5645 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 
       12.59        27.78        21.63        23.18        32.45        36.49 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       14.60        10.68         7.17        18.31        18.87        29.00 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A47A TCGA-44-A47F TCGA-44-A4SS 
       23.64        12.66         3.22        15.32        11.08         3.75 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 
       28.11        28.57        12.66        46.72        14.07        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6761 TCGA-50-5045 
        5.16        55.89        12.13        29.26        11.64        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5933 
       70.55        14.96        31.04        49.28         9.27        77.88 
TCGA-50-5935 TCGA-50-5941 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       21.47        18.64        22.55         3.88        25.51        11.05 
TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 
       33.37         8.38        34.26        30.54        13.94        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6970 TCGA-55-6972 
       38.73        48.62         2.86         0.07        15.25        48.49 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6983 TCGA-55-6985 TCGA-55-6987 
        7.76         2.20        45.34        60.03        40.54        38.47 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7903 
        0.13         3.12         1.28         1.02         1.02         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-55-8091 TCGA-55-8094 TCGA-55-8096 TCGA-55-8206 
        6.48         0.69         1.41         0.13         1.55         1.51 
TCGA-55-8207 TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 
        2.17         1.41         0.72         0.36         7.46         0.30 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8620 TCGA-55-A48X TCGA-55-A48Y 
        6.97         0.49         1.58         2.14         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        0.95         1.58         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46S 
        4.54        39.95        77.10        47.47        47.77        54.35 
TCGA-62-A46U TCGA-62-A470 TCGA-62-A471 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 
       67.96        39.22        40.93        55.40        37.02        87.98 
TCGA-64-5778 TCGA-64-5781 TCGA-67-3770 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
       42.90        51.25         0.99        14.04         5.69         4.60 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         6.64        22.68        13.61         5.42         7.56 
TCGA-69-8253 TCGA-71-6725 TCGA-73-4658 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
        3.25         2.01        52.57        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 TCGA-78-7153 
        5.39        17.06       163.10        19.27        35.93        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7159 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 
       19.50        38.50        40.11       223.96         8.48        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-78-7633 TCGA-78-8640 TCGA-78-8655 
       31.20         8.02        10.75        32.68       208.60        77.59 
TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 
      110.50        27.06        12.36        20.71        19.43        24.49 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        0.33         0.43        15.75        15.85         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8672 TCGA-86-8673 TCGA-86-A4D0 TCGA-91-6828 
        0.85         1.12         0.49        14.93         0.99        10.62 
TCGA-91-6830 TCGA-91-6836 TCGA-91-6840 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
        1.97        13.71        12.23         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7947 
        9.76         4.18         6.08         1.12         5.36         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        4.34        31.66        64.60        43.76        25.48         5.95 
TCGA-97-7938 TCGA-97-8172 TCGA-97-8174 TCGA-97-A4M7 TCGA-99-8025 TCGA-99-8033 
        0.59         5.95         5.36         8.91        14.04         5.56 
TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L9-A444 TCGA-MN-A4N5 
        5.03         9.44         9.27         6.97         0.20        11.61 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 
       58.45        49.35        37.35        86.04        58.85         5.49 
TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TF TCGA-MP-A4TH 
        5.29        31.20         2.43        10.09        11.05         4.67 
TCGA-MP-A4TK 
       19.13 

$`5P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        9.96        24.03        19.00        14.93         8.98        29.95 
TCGA-05-4425 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       21.99        26.01        25.02        24.00        15.02        15.02 
TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4630 
        0.99         2.04         7.36         5.95        97.74        35.28 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
        4.37        43.50        24.36        42.77         3.19        37.15 
TCGA-44-3918 TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
       34.06        33.30        23.77        10.78         9.93        11.90 
TCGA-44-6776 TCGA-44-6779 TCGA-44-7661 TCGA-44-7671 TCGA-44-8120 TCGA-44-A479 
       63.72        16.41        12.03        17.59         8.55        15.95 
TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SU TCGA-49-4486 TCGA-49-4494 TCGA-49-4506 
        9.44         4.44         2.50        76.21        35.54        32.84 
TCGA-49-4507 TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5055 TCGA-50-5072 
        8.81        15.02        17.13        20.48        25.81         8.05 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
        8.78        35.87         8.45        15.12        29.00        25.12 
TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-A4EZ TCGA-55-1596 
       42.31        12.16         6.21         0.72         9.21        45.17 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 
       32.61         0.79        42.48        40.70         0.92         3.88 
TCGA-55-6978 TCGA-55-6982 TCGA-55-6984 TCGA-55-6986 TCGA-55-7281 TCGA-55-7283 
        5.46        32.71        24.99        71.05         0.59         1.12 
TCGA-55-7576 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7914 TCGA-55-7994 
        1.32         0.79         1.78         0.53         0.10         1.02 
TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 
        0.16         1.08         0.69         3.02         0.20         0.85 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8505 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 
        0.49         7.07         0.95         0.10         4.80         1.61 
TCGA-55-8621 TCGA-55-A492 TCGA-62-8397 TCGA-62-8398 TCGA-62-A46P TCGA-62-A46R 
        3.45         0.03        42.38        14.60        19.53        56.68 
TCGA-62-A46V TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1681 
       72.30        29.92        56.81        20.65        39.09        38.33 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
        2.04        28.41        28.44        20.02        18.84        12.66 
TCGA-69-7761 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 
        6.12         6.05         2.30         2.93        12.56         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4677 
        4.21         7.04        23.38        29.95        26.27         1.25 
TCGA-73-7498 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 
       20.42        27.16         5.65        20.58        21.86        39.48 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7167 
       32.09         5.88        22.29         7.04       104.15        88.11 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-8648 TCGA-78-8660 TCGA-86-7701 
       53.33        28.96        10.55        39.72        10.55         0.36 
TCGA-86-7713 TCGA-86-7955 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8668 
       13.87        16.70         0.79        10.92        15.65         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 
        1.08         0.56        13.28         0.33         0.43         1.28 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
       41.33        10.16         2.60        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-95-7043 TCGA-95-7944 TCGA-95-A4VK 
       16.18         6.44         5.69         0.07         0.69         4.04 
TCGA-97-7552 TCGA-97-7941 TCGA-97-8171 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 
       63.52         0.72         3.48         2.83         4.80         0.49 
TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AG 
        6.48        12.89        15.06         1.45         3.72         7.82 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4T9 
        2.50         3.81         9.37        20.42        86.14        41.59 
TCGA-MP-A4TE TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A5C7 
       29.42        14.10        11.15        48.99 

  5P GAIN MUTATED 5P GAIN WILD-TYPE 
             0.07              0.03 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           223.96            104.15 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
           13.610            12.095 
[1] "0.1 - 224.0 (13.6)" "0.0 - 104.2 (12.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "5P GAIN MUTATED" "5P GAIN WILD-TYPE" "5P GAIN WILD-TYPE"   "5P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED"   "5P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5P GAIN WILD-TYPE"   "5P GAIN MUTATED" "5P GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D9V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  5P GAIN MUTATED         2       60       76        30        29         32
  5P GAIN WILD-TYPE       1       53       55        14        36         33
                   vv
clus                STAGE IIIB STAGE IV
  5P GAIN MUTATED            8       12
  5P GAIN WILD-TYPE          3       10
D9V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P GAIN MUTATED    81 144  15   8
  5P GAIN WILD-TYPE  60 111  24  10
D9V4, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  T1              81                60
  T2             144               111
  T3              15                24
  T4               8                10
                   vv
clus                 N0  N1 N2+N3
  5P GAIN MUTATED   157  46    39
  5P GAIN WILD-TYPE 133  39    31
D9V5, multiclass
       clus
vv      5P GAIN MUTATED 5P GAIN WILD-TYPE
  N0                157               133
  N1                 46                39
  N2+N3              39                31
                   vv
clus                 M0  M1 M1A M1B  MX
  5P GAIN MUTATED   166   9   0   2  69
  5P GAIN WILD-TYPE 148   9   1   1  46
D9V6, multiclass
D9V7, binary
                   cls
clus                  0   1
  5P GAIN MUTATED   142 107
  5P GAIN WILD-TYPE 102 104
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED    142  107
  5P GAIN WILD-TYPE  102  104
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  FEMALE             142               102
  MALE               107               104
D9V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5P GAIN MUTATED                            6
  5P GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5P GAIN MUTATED                                  45
  5P GAIN WILD-TYPE                                47
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P GAIN MUTATED                                                  171
  5P GAIN WILD-TYPE                                                121
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5P GAIN MUTATED                                            1
  5P GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5P GAIN MUTATED                                               9
  5P GAIN WILD-TYPE                                             8
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5P GAIN MUTATED                                2
  5P GAIN WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5P GAIN MUTATED                                    2
  5P GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5P GAIN MUTATED                              0                             9
  5P GAIN WILD-TYPE                            2                             9
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  5P GAIN MUTATED                                 0
  5P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5P GAIN MUTATED                                               2
  5P GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5P GAIN MUTATED                              2
  5P GAIN WILD-TYPE                            5
D9V9, multiclass
D9V10, binary
                   cls
clus                  0   1
  5P GAIN MUTATED    14 235
  5P GAIN WILD-TYPE   7 199
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P GAIN MUTATED     14  235
  5P GAIN WILD-TYPE    7  199
     clus
vv    5P GAIN MUTATED 5P GAIN WILD-TYPE
  NO               14                 7
  YES             235               199
D9V11, continuous
D9V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P GAIN MUTATED   175   4   1  10
  5P GAIN WILD-TYPE 137   6   3   8
D9V13, multiclass
    clus
vv   5P GAIN MUTATED 5P GAIN WILD-TYPE
  R0             175               137
  R1               4                 6
  R2               1                 3
  RX              10                 8

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
D10V1, survival
                   sevent
clus2                 0   1
  5Q GAIN MUTATED    70  30
  5Q GAIN WILD-TYPE 231  88
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              100               319 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
               30                88 
$`5Q GAIN MUTATED`
TCGA-05-4398 TCGA-05-4402 TCGA-05-4426 TCGA-05-5423 TCGA-35-3615 TCGA-38-6178 
       47.05         8.02        26.01         4.96         0.46        14.73 
TCGA-38-7271 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 
       26.30        46.98        13.15        44.94        42.08        42.77 
TCGA-44-3398 TCGA-44-4112 TCGA-44-5645 TCGA-44-6774 TCGA-44-6777 TCGA-44-7659 
       38.24        23.74        12.59        21.63        32.45        14.60 
TCGA-44-7672 TCGA-44-8119 TCGA-44-A47A TCGA-44-A47F TCGA-49-4490 TCGA-49-4501 
       23.64         3.22        15.32        11.08        12.66        46.72 
TCGA-49-4512 TCGA-49-6743 TCGA-49-6761 TCGA-50-5051 TCGA-50-5935 TCGA-50-6591 
        5.16        12.13        11.64        14.96        21.47         3.88 
TCGA-50-6592 TCGA-50-6597 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 
       25.51        33.37        30.54        13.94        48.62         0.07 
TCGA-55-6972 TCGA-55-6980 TCGA-55-6983 TCGA-55-7573 TCGA-55-7574 TCGA-55-7910 
       48.49         2.20        60.03         0.13         3.12         6.48 
TCGA-55-7911 TCGA-55-8091 TCGA-55-8206 TCGA-55-8207 TCGA-55-8514 TCGA-55-A48Z 
        0.69         1.41         1.51         2.17         6.97         0.95 
TCGA-55-A493 TCGA-55-A4DG TCGA-62-A46S TCGA-62-A46U TCGA-64-1680 TCGA-64-5775 
        0.92         5.29        54.35        67.96        37.02         2.04 
TCGA-64-5781 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7763 
       51.25         5.69         4.60        13.87         6.64        22.68 
TCGA-69-8253 TCGA-73-4670 TCGA-73-4675 TCGA-78-7143 TCGA-78-7147 TCGA-78-7153 
        3.25         4.27         1.32       163.10        19.27        24.99 
TCGA-78-7154 TCGA-78-7163 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 
       19.50       223.96        26.53        31.20         8.02        10.75 
TCGA-78-7633 TCGA-83-5908 TCGA-86-7711 TCGA-86-8055 TCGA-86-8280 TCGA-86-8358 
       32.68        27.06        20.71         0.33         0.53         0.62 
TCGA-86-8359 TCGA-86-A4D0 TCGA-91-6836 TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        0.85         0.99        13.71         7.17         9.76         4.18 
TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-8172 TCGA-97-8174 TCGA-97-A4M7 
        1.32        31.66        64.60         5.95         5.36         8.91 
TCGA-J2-A4AE TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 
        9.27        49.35        37.35        86.04         5.49         5.29 
TCGA-MP-A4TD TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TK 
       10.09        11.05         4.67        19.13 

$`5Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
        9.96        24.03        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4427 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
       25.02        25.02        24.00        15.02        15.02        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
       22.03         0.99         2.04         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-A44F TCGA-44-2655 TCGA-44-2661 TCGA-44-2666 
       11.64        44.61         4.37        43.50        24.36         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 
        8.09        37.15        34.06         6.21        33.30        28.37 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 
       23.77        10.78         9.93        27.78        11.90        23.18 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       63.72        36.49        16.41        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-8117 TCGA-44-8120 
       18.31        18.87        29.00        17.59        12.66         8.55 
TCGA-44-A479 TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
       15.95         9.44         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.11        28.57        35.54        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
       29.46        55.89        15.02        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       71.47        70.55        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        9.27         8.78        35.87        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 
       18.64        29.00        25.12        22.55        42.31        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-A4EZ 
       12.16         6.21         0.72         8.38        34.26         9.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73        45.17         2.86        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
       42.48        40.70        15.25         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
        7.76        45.34        32.71        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
       38.47         0.59         1.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7914 
        1.02         0.79         1.78         0.62         0.53         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        1.02         0.16         1.08         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 
        0.85         0.13         1.55         0.49         7.07         1.41 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        0.72         0.95         0.36         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DF 
        1.08         1.02         1.58         0.03         0.16         1.55 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 
        4.54        39.95        42.38        14.60        77.10        47.47 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 
       47.77        19.53        56.68        72.30        39.22        40.93 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 
       29.92        56.81        20.65        39.09        55.40        38.33 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       87.98        42.90        28.41        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
       18.84        14.04        12.66         6.12        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 
        7.56         6.05         2.30         2.93        12.56         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        4.21         7.04         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       26.27        15.35         5.39         1.25        20.42        17.06 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
      104.15         8.48        88.11        53.33        28.96        10.55 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-86-6562 
      208.60        39.72        77.59        10.55       110.50        12.36 
TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8073 
        0.36        13.87        19.43        16.70        24.49         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8585 
        0.79        15.75        10.92        15.65        15.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 
        1.45         1.08         0.56         0.49        14.93        13.28 
TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.43         1.28        10.62        41.33         1.97 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
       10.16         2.60        12.23        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-93-8067 
       16.18         6.44         5.69         1.18         1.45         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-95-A4VK 
        1.12         0.07         5.36         0.69         4.34         4.04 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       63.52        43.76        25.48         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 
        3.48         2.83         4.80         0.49         6.48        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T6 
        9.37        20.42        11.61        86.14        58.45        58.85 
TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TE TCGA-MP-A4TI TCGA-MP-A4TJ 
       41.59        31.20         2.43        29.42        14.10        11.15 
TCGA-MP-A5C7 
       48.99 

  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
             0.07              0.03 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           223.96            208.60 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
           12.625            12.660 
[1] "0.1 - 224.0 (12.6)" "0.0 - 208.6 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE" "5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5Q GAIN WILD-TYPE"   "5Q GAIN MUTATED" "5Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D10V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  5Q GAIN MUTATED         0       26       32        12        13         17
  5Q GAIN WILD-TYPE       3       87       99        32        52         48
                   vv
clus                STAGE IIIB STAGE IV
  5Q GAIN MUTATED            3        6
  5Q GAIN WILD-TYPE          8       16
D10V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q GAIN MUTATED    33  67   6   3
  5Q GAIN WILD-TYPE 108 188  33  15
D10V4, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  T1              33               108
  T2              67               188
  T3               6                33
  T4               3                15
                   vv
clus                 N0  N1 N2+N3
  5Q GAIN MUTATED    68  18    19
  5Q GAIN WILD-TYPE 222  67    51
D10V5, multiclass
       clus
vv      5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  N0                 68               222
  N1                 18                67
  N2+N3              19                51
                   vv
clus                 M0  M1 M1A M1B  MX
  5Q GAIN MUTATED    75   6   0   0  26
  5Q GAIN WILD-TYPE 239  12   1   3  89
D10V6, multiclass
D10V7, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED    68  41
  5Q GAIN WILD-TYPE 176 170
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED     68   41
  5Q GAIN WILD-TYPE  176  170
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  FEMALE              68               176
  MALE                41               170
D10V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5Q GAIN MUTATED                            4
  5Q GAIN WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5Q GAIN MUTATED                                  17
  5Q GAIN WILD-TYPE                                75
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q GAIN MUTATED                                                   75
  5Q GAIN WILD-TYPE                                                217
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5Q GAIN MUTATED                                            1
  5Q GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5Q GAIN MUTATED                                               4
  5Q GAIN WILD-TYPE                                            13
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5Q GAIN MUTATED                                2
  5Q GAIN WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5Q GAIN MUTATED                                    0
  5Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5Q GAIN MUTATED                              0                             4
  5Q GAIN WILD-TYPE                            2                            14
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  5Q GAIN MUTATED                                 0
  5Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5Q GAIN MUTATED                                               0
  5Q GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5Q GAIN MUTATED                              2
  5Q GAIN WILD-TYPE                            5
D10V9, multiclass
D10V10, binary
                   cls
clus                  0   1
  5Q GAIN MUTATED     8 101
  5Q GAIN WILD-TYPE  13 333
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q GAIN MUTATED      8  101
  5Q GAIN WILD-TYPE   13  333
     clus
vv    5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  NO                8                13
  YES             101               333
D10V11, continuous
D10V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q GAIN MUTATED    77   3   1   4
  5Q GAIN WILD-TYPE 235   7   3  14
D10V13, multiclass
    clus
vv   5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  R0              77               235
  R1               3                 7
  R2               1                 3
  RX               4                14

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
D11V1, survival
                   sevent
clus2                 0   1
  6P GAIN MUTATED    89  30
  6P GAIN WILD-TYPE 212  88
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              119               300 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
               30                88 
$`6P GAIN MUTATED`
TCGA-05-4249 TCGA-05-4420 TCGA-05-4430 TCGA-05-5425 TCGA-35-3615 TCGA-35-5375 
       50.07        29.95        25.02        28.96         0.46         8.68 
TCGA-38-4625 TCGA-38-4628 TCGA-44-2659 TCGA-44-3918 TCGA-44-6147 TCGA-44-6774 
       97.74        49.02        44.94        34.06        27.78        21.63 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-A4SU TCGA-49-4487 TCGA-49-4490 
        7.17        18.31        29.00         2.50        28.11        12.66 
TCGA-49-4510 TCGA-49-6742 TCGA-49-6761 TCGA-50-5931 TCGA-50-5933 TCGA-50-5941 
       29.46        15.02        11.64         8.78        77.88        18.64 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6673 TCGA-50-7109 
       25.12        22.55        42.31         3.88         0.72         8.38 
TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 
       34.26        13.94         9.21        23.05        48.62        45.17 
TCGA-55-6642 TCGA-55-6970 TCGA-55-7573 TCGA-55-7903 TCGA-55-7995 TCGA-55-8085 
       32.61        15.25         0.13         0.62         0.16         1.08 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8511 TCGA-55-8512 TCGA-55-8514 TCGA-55-8615 
        0.49         1.51         0.30         0.10         6.97         0.49 
TCGA-55-8620 TCGA-55-A48Y TCGA-55-A490 TCGA-62-8394 TCGA-62-8398 TCGA-62-8399 
        2.14         1.02         1.58         4.54        14.60        77.10 
TCGA-62-A46P TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-64-1677 TCGA-64-1680 
       19.53        72.30        39.22        40.93        20.65        37.02 
TCGA-64-5774 TCGA-64-5779 TCGA-67-3771 TCGA-67-3773 TCGA-69-7763 TCGA-69-7764 
       87.98        28.41        20.02        14.04        22.68        13.61 
TCGA-69-7765 TCGA-69-7979 TCGA-69-8255 TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 
        5.42         2.93         4.21         2.01        29.95        15.35 
TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7147 TCGA-78-7149 
        4.27         1.25        20.42        17.06        19.27        35.93 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7161 TCGA-78-7162 TCGA-78-7167 TCGA-78-7220 
       38.50        40.11         7.04       104.15        88.11        26.53 
TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-78-8655 TCGA-78-8662 TCGA-86-8074 
       10.75        10.55        32.68        77.59       110.50         0.79 
TCGA-86-8075 TCGA-86-8279 TCGA-86-8358 TCGA-86-8674 TCGA-91-6835 TCGA-91-6836 
       15.75        15.85         0.62        13.28         2.60        13.71 
TCGA-91-6847 TCGA-91-6848 TCGA-91-8499 TCGA-95-7567 TCGA-95-7944 TCGA-97-7546 
       27.68         7.36         1.18         5.36         0.69        31.66 
TCGA-97-7553 TCGA-97-7938 TCGA-97-8171 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M7 
       43.76         0.59         3.48         4.80         0.49         8.91 
TCGA-99-8025 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE TCGA-L9-A444 TCGA-MN-A4N4 
       14.04         5.56         3.72         9.27         0.20        20.42 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4T6 TCGA-MP-A4TD TCGA-MP-A4TE 
       11.61        86.14        58.85        10.09        29.42 

$`6P GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
        3.98        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 
       22.03         0.99         2.04         7.36         5.95       120.79 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61        14.73 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        43.50        46.98        13.15        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21        23.74        33.30        28.37        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       10.78         9.93        11.90        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7669 
       36.49        16.41        14.60        10.68        12.03        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
       17.59        23.64        12.66         3.22         8.55        15.95 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 
       15.32         9.44        11.08         4.44         3.75        76.21 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       28.57        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 
        5.16        55.89        12.13        29.26        17.13        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.05         9.27        35.87        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       29.00        25.51        11.05        12.16         6.21        33.37 
TCGA-53-7626 TCGA-55-1594 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 
       30.54        38.73         2.86         0.07         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         0.59         1.12         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 
        1.28         1.02         1.02         0.79         1.78         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8087 TCGA-55-8089 
        6.48         0.69         0.10         1.02         0.69         3.02 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8207 
        0.20         1.41         0.85         0.13         1.55         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        7.07         1.41         0.72         0.95         0.36         7.46 
TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Z 
        4.80         1.58         1.61         3.45         1.08         0.95 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 
        0.03         0.92         0.16         1.55         5.29        39.95 
TCGA-62-8397 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U 
       42.38        47.47        47.77        56.68        54.35        67.96 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5775 
       29.92        56.81        39.09        55.40        38.33         2.04 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 
       42.90        51.25        28.44         0.99        18.84        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7973 
        5.69         4.60        13.87         6.64         6.12         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-A59K 
        6.05         2.30        12.56         3.25         2.50         7.04 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
       52.57        23.38        26.27         1.32         5.39       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       27.16         5.65        20.58        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7163 TCGA-78-7166 
       19.50        32.09         5.88        22.29       223.96         8.48 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-8640 TCGA-78-8648 
       31.20         8.02        53.33        28.96       208.60        39.72 
TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55        27.06        12.36         0.36        20.71        13.87 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8076 
       19.43        16.70        24.49         0.33         0.43        10.92 
TCGA-86-8278 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
       15.65         0.53         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.56         0.49        14.93         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6840 
        1.28        10.62        41.33         1.97        10.16        12.23 
TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD 
        1.15        16.18         6.44         5.69         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 
        9.76         4.18         6.08         1.12         0.07         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 
        4.34         4.04        64.60        63.52        25.48         5.95 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-A4M2 TCGA-99-7458 
        0.72         5.95         5.36         2.83         6.48        12.89 
TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 
       15.06         1.45         5.03         9.44         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N1 TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
        2.50         3.81         9.37        58.45        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC 
       86.04         5.49         5.29        41.59        31.20         2.43 
TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.05         4.67        14.10        11.15        19.13        48.99 

  6P GAIN MUTATED 6P GAIN WILD-TYPE 
             0.10              0.03 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           110.50            223.96 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
           15.020            12.015 
[1] "0.1 - 110.5 (15.0)" "0.0 - 224.0 (12.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6P GAIN MUTATED"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "6P GAIN MUTATED"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED"   "6P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6P GAIN WILD-TYPE"   "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE"   "6P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "6P GAIN MUTATED" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" "6P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D11V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  6P GAIN MUTATED         1       40       34        10        13         17
  6P GAIN WILD-TYPE       2       73       97        34        52         48
                   vv
clus                STAGE IIIB STAGE IV
  6P GAIN MUTATED            4       10
  6P GAIN WILD-TYPE          7       12
D11V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P GAIN MUTATED    47  68   8   5
  6P GAIN WILD-TYPE  94 187  31  13
D11V4, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  T1              47                94
  T2              68               187
  T3               8                31
  T4               5                13
                   vv
clus                 N0  N1 N2+N3
  6P GAIN MUTATED    86  18    21
  6P GAIN WILD-TYPE 204  67    49
D11V5, multiclass
       clus
vv      6P GAIN MUTATED 6P GAIN WILD-TYPE
  N0                 86               204
  N1                 18                67
  N2+N3              21                49
                   vv
clus                 M0  M1 M1A M1B  MX
  6P GAIN MUTATED    88   6   1   2  32
  6P GAIN WILD-TYPE 226  12   0   1  83
D11V6, multiclass
D11V7, binary
                   cls
clus                  0   1
  6P GAIN MUTATED    68  61
  6P GAIN WILD-TYPE 176 150
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED     68   61
  6P GAIN WILD-TYPE  176  150
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  FEMALE              68               176
  MALE                61               150
D11V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6P GAIN MUTATED                            7
  6P GAIN WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6P GAIN MUTATED                                  27
  6P GAIN WILD-TYPE                                65
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P GAIN MUTATED                                                   78
  6P GAIN WILD-TYPE                                                214
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6P GAIN MUTATED                                            0
  6P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6P GAIN MUTATED                                               6
  6P GAIN WILD-TYPE                                            11
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6P GAIN MUTATED                                1
  6P GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6P GAIN MUTATED                                    1
  6P GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6P GAIN MUTATED                              0                             7
  6P GAIN WILD-TYPE                            2                            11
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  6P GAIN MUTATED                                 0
  6P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6P GAIN MUTATED                                               1
  6P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6P GAIN MUTATED                              1
  6P GAIN WILD-TYPE                            6
D11V9, multiclass
D11V10, binary
                   cls
clus                  0   1
  6P GAIN MUTATED     5 124
  6P GAIN WILD-TYPE  16 310
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P GAIN MUTATED      5  124
  6P GAIN WILD-TYPE   16  310
     clus
vv    6P GAIN MUTATED 6P GAIN WILD-TYPE
  NO                5                16
  YES             124               310
D11V11, continuous
D11V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P GAIN MUTATED    90   1   0   5
  6P GAIN WILD-TYPE 222   9   4  13
D11V13, multiclass
    clus
vv   6P GAIN MUTATED 6P GAIN WILD-TYPE
  R0              90               222
  R1               1                 9
  R2               0                 4
  RX               5                13

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
D12V1, survival
                   sevent
clus2                 0   1
  6Q GAIN MUTATED    40  11
  6Q GAIN WILD-TYPE 261 107
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               51               368 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               11               107 
$`6Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4420 TCGA-05-4432 TCGA-05-5425 TCGA-35-5375 TCGA-38-4625 
       50.07        29.95        25.02        28.96         8.68        97.74 
TCGA-38-4628 TCGA-44-7667 TCGA-44-7670 TCGA-49-4490 TCGA-49-6742 TCGA-50-6591 
       49.02        18.31        29.00        12.66        15.02         3.88 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-A4EZ TCGA-55-1596 TCGA-55-7910 
       33.37         0.72         8.38         9.21        45.17         6.48 
TCGA-55-7995 TCGA-55-8097 TCGA-55-8206 TCGA-55-8511 TCGA-55-8514 TCGA-55-8620 
        0.16         0.49         1.51         0.30         6.97         2.14 
TCGA-62-8394 TCGA-62-A46P TCGA-62-A471 TCGA-67-3773 TCGA-69-7763 TCGA-69-7764 
        4.54        19.53        40.93        14.04        22.68        13.61 
TCGA-69-7765 TCGA-69-7979 TCGA-71-6725 TCGA-73-4677 TCGA-78-7167 TCGA-78-7220 
        5.42         2.93         2.01         1.25        88.11        26.53 
TCGA-78-7539 TCGA-78-8662 TCGA-86-8074 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
       10.75       110.50         0.79        13.71        27.68         7.36 
TCGA-91-8499 TCGA-95-7944 TCGA-97-7546 TCGA-97-8177 TCGA-99-8025 TCGA-99-8033 
        1.18         0.69        31.66         4.80        14.04         5.56 
TCGA-J2-A4AE TCGA-MN-A4N4 TCGA-MP-A4TD 
        9.27        20.42        10.09 

$`6Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
        3.98        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       26.01        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
      120.79        37.71        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       14.73        26.30         4.37        43.50        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        34.06         6.21        23.74        33.30 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       28.37        12.59        23.77        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90        21.63        23.18        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 
       16.41        14.60        10.68        12.03         7.17        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
       17.59        23.64        12.66         3.22         8.55        15.95 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.32         9.44        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        28.57        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 
       32.84         8.81        29.46         5.16        55.89        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       29.26        17.13        11.64        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       14.96        25.81        31.04        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 
       18.64        29.00        25.12        22.55        42.31        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
       11.05        12.16         6.21        34.26        30.54        13.94 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.02         0.79         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        0.10         1.02         1.08         0.69         3.02         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8207 TCGA-55-8299 
        1.41         0.85         0.13         1.55         2.17         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8512 
        1.41         0.72         0.95         0.36         7.46         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        4.80         0.49         1.58         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 
        1.55         5.29        39.95        42.38        14.60        77.10 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.47        47.77        56.68        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        29.92        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        38.33        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       51.25        28.44         0.99        20.02        18.84        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7973 
        5.69         4.60        13.87         6.64         6.12         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30        12.56         3.25         2.50         4.21 
TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        7.04        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        4.27         1.32         5.39        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       31.20         8.02        53.33        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 
      208.60        39.72        77.59        10.55        27.06        12.36 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36        20.71        13.87        19.43        16.70        24.49 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.43        15.75        10.92        15.65        15.85 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 
        0.56         0.49        14.93        13.28         0.33         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.43         1.28        10.62        41.33         1.97        10.16 
TCGA-91-6835 TCGA-91-6840 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
        2.60        12.23         1.15        16.18         6.44         5.69 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        1.45         7.17         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 
        0.07         5.36         1.32         4.34         4.04        64.60 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       63.52        43.76        25.48         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M2 
        3.48         5.95         5.36         2.83         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 
        8.91        12.89        15.06         1.45         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
        9.37        11.61        86.14        58.45        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       86.04        58.85         5.49         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
        2.43        29.42        11.05         4.67        14.10        11.15 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
             0.16              0.03 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           110.50            223.96 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
           10.750            12.775 
[1] "0.2 - 110.5 (10.8)" "0.0 - 224.0 (12.8)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED"   "6Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "6Q GAIN MUTATED"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE"   "6Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" "6Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D12V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  6Q GAIN MUTATED         1       13       16         6         8          6
  6Q GAIN WILD-TYPE       2      100      115        38        57         59
                   vv
clus                STAGE IIIB STAGE IV
  6Q GAIN MUTATED            1        5
  6Q GAIN WILD-TYPE         10       17
D12V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q GAIN MUTATED    17  32   4   2
  6Q GAIN WILD-TYPE 124 223  35  16
D12V4, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  T1              17               124
  T2              32               223
  T3               4                35
  T4               2                16
                   vv
clus                 N0  N1 N2+N3
  6Q GAIN MUTATED    37  11     7
  6Q GAIN WILD-TYPE 253  74    63
D12V5, multiclass
       clus
vv      6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  N0                 37               253
  N1                 11                74
  N2+N3               7                63
                   vv
clus                 M0  M1 M1A M1B  MX
  6Q GAIN MUTATED    36   3   0   1  16
  6Q GAIN WILD-TYPE 278  15   1   2  99
D12V6, multiclass
D12V7, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED    32  24
  6Q GAIN WILD-TYPE 212 187
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED     32   24
  6Q GAIN WILD-TYPE  212  187
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  FEMALE              32               212
  MALE                24               187
D12V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6Q GAIN MUTATED                            3
  6Q GAIN WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6Q GAIN MUTATED                                  12
  6Q GAIN WILD-TYPE                                80
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q GAIN MUTATED                                                   37
  6Q GAIN WILD-TYPE                                                255
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6Q GAIN MUTATED                                            0
  6Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6Q GAIN MUTATED                                               1
  6Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6Q GAIN MUTATED                                0
  6Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6Q GAIN MUTATED                                    0
  6Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6Q GAIN MUTATED                              0                             2
  6Q GAIN WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  6Q GAIN MUTATED                                 0
  6Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6Q GAIN MUTATED                                               0
  6Q GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6Q GAIN MUTATED                              1
  6Q GAIN WILD-TYPE                            6
D12V9, multiclass
D12V10, binary
                   cls
clus                  0   1
  6Q GAIN MUTATED     1  55
  6Q GAIN WILD-TYPE  20 379
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q GAIN MUTATED      1   55
  6Q GAIN WILD-TYPE   20  379
     clus
vv    6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  NO                1                20
  YES              55               379
D12V11, continuous
D12V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q GAIN MUTATED    38   0   0   3
  6Q GAIN WILD-TYPE 274  10   4  15
D12V13, multiclass
    clus
vv   6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  R0              38               274
  R1               0                10
  R2               0                 4
  RX               3                15

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
D13V1, survival
                   sevent
clus2                 0   1
  7P GAIN MUTATED   158  62
  7P GAIN WILD-TYPE 143  56
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              220               199 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
               62                56 
$`7P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
        3.98        19.92        45.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-5423 
       20.05         2.96        14.93         8.98        29.95         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
       28.96        22.03         7.36         5.95         8.68        97.74 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        28.37        11.64        44.61        14.73 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-3396 
       46.98        13.15        44.94        24.36        42.08        37.15 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 
        6.21        23.74        28.37        12.59        23.77        27.78 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       23.18        32.45        16.41        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-8117 TCGA-44-A479 TCGA-44-A47F TCGA-44-A4SS 
       18.31        18.87        12.66        15.95        11.08         3.75 
TCGA-44-A4SU TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
        2.50        28.57        12.66        35.54        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6745 TCGA-49-6761 TCGA-50-5045 TCGA-50-5049 
       29.46         5.16        17.13        11.64        71.47        70.55 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 
       25.81        31.04         8.05        77.88         8.45        18.64 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 
       25.12        22.55        42.31         3.88        11.05        12.16 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-55-1596 TCGA-55-5899 
        6.21        33.37         0.72        34.26        45.17         2.86 
TCGA-55-6543 TCGA-55-6712 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
        0.07         0.79         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 TCGA-55-6987 
        7.76         2.20        45.34        32.71        40.54        38.47 
TCGA-55-7283 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7907 TCGA-55-7910 
        1.12         1.32         1.02         1.02         0.53         6.48 
TCGA-55-7994 TCGA-55-8085 TCGA-55-8091 TCGA-55-8092 TCGA-55-8096 TCGA-55-8206 
        1.02         1.08         1.41         0.85         1.55         1.51 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 TCGA-55-8514 
        1.41         0.72         0.95         7.46         0.30         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8620 TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        0.49         1.58         2.14         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8394 TCGA-62-8397 TCGA-62-8398 
        0.92         0.16         5.29         4.54        42.38        14.60 
TCGA-62-8399 TCGA-62-A46P TCGA-62-A46R TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 
       77.10        19.53        56.68        29.92        56.81        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 
       37.02        38.33        28.41        51.25        20.02        18.84 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7979 
       13.87         6.64        13.61         5.42         6.05         2.93 
TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 
        4.21         7.04         2.01        52.57        29.95        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.27         1.32         5.39        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7154 TCGA-78-7155 TCGA-78-7160 TCGA-78-7161 
       19.27        21.86        19.50        38.50        22.29         7.04 
TCGA-78-7163 TCGA-78-7535 TCGA-78-7540 TCGA-78-7542 TCGA-78-8655 TCGA-78-8662 
      223.96        31.20        28.96        10.55        77.59       110.50 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       27.06        12.36         0.36        13.87        19.43        16.70 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 
        0.33         0.43         0.79        15.75        15.85         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-86-8672 TCGA-86-8673 TCGA-86-A456 
        0.62         0.85         1.45         0.49        14.93         0.33 
TCGA-86-A4P7 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-8496 
        0.43        10.16         2.60        27.68         7.36         6.44 
TCGA-91-A4BC TCGA-93-7348 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7553 
        1.45         4.18         5.36         0.69         1.32        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-8171 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 
       25.48         5.95         3.48         2.83         4.80         0.49 
TCGA-97-A4M7 TCGA-99-8025 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
        8.91        14.04         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 
        9.27         6.97         3.81         0.20         9.37        20.42 
TCGA-MN-A4N5 TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4T9 
       11.61        49.35        37.35        58.85         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TK 
       31.20         2.43        10.09        19.13 

$`7P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 TCGA-05-4422 
       50.07        14.01         9.96        24.03        19.00        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       30.02        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       24.00        15.02        15.02         0.99         2.04         0.46 
TCGA-38-4626 TCGA-38-4630 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2665 
      120.79        35.28        26.30         4.37        43.50        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-3918 TCGA-44-5643 TCGA-44-6145 
        3.19         8.09        38.24        34.06        33.30        10.78 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6778 TCGA-44-7659 
        9.93        11.90        21.63        63.72        36.49        14.60 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-8120 TCGA-44-A47A 
       29.00        17.59        23.64         3.22         8.55        15.32 
TCGA-44-A47B TCGA-44-A47G TCGA-49-4486 TCGA-49-4487 TCGA-49-4501 TCGA-49-4507 
        9.44         4.44        76.21        28.11        46.72         8.81 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5051 
       55.89        15.02        12.13        29.26        20.48        14.96 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5939 
       49.28         9.27         8.78        35.87        21.47        15.12 
TCGA-50-5942 TCGA-50-6592 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ 
       29.00        25.51         8.38        30.54        13.94         9.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       23.05        38.73        48.62        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-7281 TCGA-55-7573 
       15.25        60.03        24.99        71.05         0.59         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 
        3.12         1.28         0.79         1.78         0.62         0.69 
TCGA-55-7914 TCGA-55-7995 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8094 
        0.10         0.16         0.69         3.02         0.20         0.13 
TCGA-55-8097 TCGA-55-8207 TCGA-55-8299 TCGA-55-8506 TCGA-55-8512 TCGA-55-8513 
        0.49         2.17         7.07         0.36         0.10         4.80 
TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A4DF TCGA-62-8395 
        1.61         3.45         1.08         1.02         1.55        39.95 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       47.47        47.77        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       40.93        20.65        39.09        87.98         2.04        42.90 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.44         0.99        14.04        12.66         5.69         4.60 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7973 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
        6.12        22.68         7.56         2.30        12.56         3.25 
TCGA-69-8254 TCGA-73-4659 TCGA-73-4666 TCGA-73-4677 TCGA-73-7498 TCGA-78-7146 
        2.50        23.38        26.27         1.25        20.42         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 
       20.58        35.93        39.48        24.99        32.09         5.88 
TCGA-78-7159 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
       40.11       104.15         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8660 
       53.33        10.75        32.68       208.60        39.72        10.55 
TCGA-86-7711 TCGA-86-8054 TCGA-86-8076 TCGA-86-8278 TCGA-86-8585 TCGA-86-8669 
       20.71        24.49        10.92        15.65         1.12         1.08 
TCGA-86-8671 TCGA-86-8674 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.56        13.28         0.99         1.28        10.62        41.33 
TCGA-91-6830 TCGA-91-6836 TCGA-91-6840 TCGA-91-6849 TCGA-91-7771 TCGA-91-8497 
        1.97        13.71        12.23         1.15        16.18         5.69 
TCGA-91-8499 TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.18         7.17         9.76         6.08         1.12         0.07 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7938 
        4.34         4.04        31.66        64.60        63.52         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8028 
        0.72         5.95         5.36         6.48        12.89        15.06 
TCGA-99-8032 TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T4 
        1.45         7.82         2.50        86.14        58.45        86.04 
TCGA-MP-A4T7 TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
        5.49        29.42        11.05         4.67        14.10        11.15 
TCGA-MP-A5C7 
       48.99 

  7P GAIN MUTATED 7P GAIN WILD-TYPE 
             0.03              0.07 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           223.96            208.60 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
           11.835            14.010 
[1] "0.0 - 224.0 (11.8)" "0.1 - 208.6 (14.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7P GAIN MUTATED"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7P GAIN MUTATED" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE"   "7P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED"   "7P GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" "7P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7P GAIN WILD-TYPE"   "7P GAIN MUTATED" "7P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D13V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  7P GAIN MUTATED         1       52       71        20        31         41
  7P GAIN WILD-TYPE       2       61       60        24        34         24
                   vv
clus                STAGE IIIB STAGE IV
  7P GAIN MUTATED            6       14
  7P GAIN WILD-TYPE          5        8
D13V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P GAIN MUTATED    67 136  24   8
  7P GAIN WILD-TYPE  74 119  15  10
D13V4, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  T1              67                74
  T2             136               119
  T3              24                15
  T4               8                10
                   vv
clus                 N0  N1 N2+N3
  7P GAIN MUTATED   139  41    49
  7P GAIN WILD-TYPE 151  44    21
D13V5, multiclass
       clus
vv      7P GAIN MUTATED 7P GAIN WILD-TYPE
  N0                139               151
  N1                 41                44
  N2+N3              49                21
                   vv
clus                 M0  M1 M1A M1B  MX
  7P GAIN MUTATED   159  11   1   1  61
  7P GAIN WILD-TYPE 155   7   0   2  54
D13V6, multiclass
D13V7, binary
                   cls
clus                  0   1
  7P GAIN MUTATED   127 109
  7P GAIN WILD-TYPE 117 102
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED    127  109
  7P GAIN WILD-TYPE  117  102
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  FEMALE             127               117
  MALE               109               102
D13V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7P GAIN MUTATED                            5
  7P GAIN WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7P GAIN MUTATED                                  41
  7P GAIN WILD-TYPE                                51
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P GAIN MUTATED                                                  165
  7P GAIN WILD-TYPE                                                127
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7P GAIN MUTATED                                            3
  7P GAIN WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7P GAIN MUTATED                                               8
  7P GAIN WILD-TYPE                                             9
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7P GAIN MUTATED                                0
  7P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7P GAIN MUTATED                                    2
  7P GAIN WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7P GAIN MUTATED                              0                             8
  7P GAIN WILD-TYPE                            2                            10
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  7P GAIN MUTATED                                 0
  7P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7P GAIN MUTATED                                               3
  7P GAIN WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7P GAIN MUTATED                              1
  7P GAIN WILD-TYPE                            6
D13V9, multiclass
D13V10, binary
                   cls
clus                  0   1
  7P GAIN MUTATED     9 227
  7P GAIN WILD-TYPE  12 207
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P GAIN MUTATED      9  227
  7P GAIN WILD-TYPE   12  207
     clus
vv    7P GAIN MUTATED 7P GAIN WILD-TYPE
  NO                9                12
  YES             227               207
D13V11, continuous
D13V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P GAIN MUTATED   158   5   3  11
  7P GAIN WILD-TYPE 154   5   1   7
D13V13, multiclass
    clus
vv   7P GAIN MUTATED 7P GAIN WILD-TYPE
  R0             158               154
  R1               5                 5
  R2               3                 1
  RX              11                 7

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
D14V1, survival
                   sevent
clus2                 0   1
  7Q GAIN MUTATED   134  51
  7Q GAIN WILD-TYPE 167  67
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              185               234 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
               51                67 
$`7Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
        3.98        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4418 TCGA-05-4420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-35-4122 
        8.98        29.95         4.96        28.96        22.03         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4632 
        5.95         8.68        97.74        37.71        49.02        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-3396 
       14.73        46.98        13.15        44.94        42.08        37.15 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 
       34.06         6.21        12.59        23.77        10.78        27.78 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 
       32.45        36.49        10.68        12.03         7.17        18.87 
TCGA-44-8117 TCGA-44-A47F TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4488 TCGA-49-4490 
       12.66        11.08         3.75         2.50        28.57        12.66 
TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 TCGA-49-6745 
       35.54        14.07        32.84        29.46         5.16        17.13 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5935 
       71.47        70.55        31.04         8.05         9.27        21.47 
TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
       18.64        25.12        22.55        42.31         3.88        11.05 
TCGA-50-6597 TCGA-53-7624 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1596 TCGA-55-6543 
       33.37        34.26         9.21        23.05        45.17         0.07 
TCGA-55-6712 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
        0.79         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6985 TCGA-55-6987 TCGA-55-7283 TCGA-55-7576 
        2.20        45.34        40.54        38.47         1.12         1.32 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7910 TCGA-55-7994 TCGA-55-8091 TCGA-55-8092 
        1.02         0.53         6.48         1.02         1.41         0.85 
TCGA-55-8096 TCGA-55-8206 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8510 
        1.55         1.51         1.41         0.72         0.95         7.46 
TCGA-55-8511 TCGA-55-8514 TCGA-55-8616 TCGA-55-8620 TCGA-55-A48Z TCGA-55-A490 
        0.30         6.97         1.58         2.14         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-62-8394 TCGA-62-8397 TCGA-62-8398 
        0.03         0.92         0.16         4.54        42.38        14.60 
TCGA-62-8399 TCGA-62-A46R TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 TCGA-64-1680 
       77.10        56.68        29.92        56.81        55.40        37.02 
TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 TCGA-67-3772 TCGA-69-7760 TCGA-69-7763 
       38.33        28.41        51.25        18.84         6.64        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-A59K 
       13.61         5.42         6.05         2.30         2.93         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 
        2.01        52.57        23.38        29.95        26.27         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        1.32         5.39        17.06       163.10        27.16        19.27 
TCGA-78-7160 TCGA-78-7163 TCGA-78-7220 TCGA-78-7540 TCGA-78-8655 TCGA-83-5908 
       22.29       223.96        26.53        28.96        77.59        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 
       12.36         0.36        13.87        19.43        16.70         0.33 
TCGA-86-8073 TCGA-86-8075 TCGA-86-8280 TCGA-86-8359 TCGA-86-8668 TCGA-86-8672 
        0.43        15.75         0.53         0.85         1.45         0.49 
TCGA-86-8673 TCGA-86-A4P7 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-8496 
       14.93         0.43         2.60        27.68         7.36         6.44 
TCGA-91-A4BC TCGA-93-7348 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7553 
        1.45         4.18         5.36         0.69         1.32        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-8171 TCGA-97-8175 TCGA-97-8179 TCGA-99-8025 
       25.48         5.95         3.48         2.83         0.49        14.04 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-L4-A4E5 TCGA-L9-A444 TCGA-MN-A4N1 
        5.56         5.03         9.44         6.97         0.20         9.37 
TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T6 TCGA-MP-A4T8 
       20.42        86.14        49.35        37.35        58.85         5.29 
TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TK 
       41.59        31.20         2.43        10.09        19.13 

$`7Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 
       50.07        19.92        14.01        45.01         9.96        24.03 
TCGA-05-4403 TCGA-05-4417 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       19.00        14.93        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 TCGA-38-4629 TCGA-38-4630 
        0.99         2.04         0.46       120.79        28.37        35.28 
TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2661 TCGA-44-2665 
       11.64        26.30         4.37        43.50        24.36        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        3.19         8.09        38.24        23.74        33.30        28.37 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 
        9.93        11.90        21.63        23.18        63.72        16.41 
TCGA-44-7659 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 
       14.60        18.31        29.00        17.59        23.64         3.22 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G TCGA-49-4486 
        8.55        15.95        15.32         9.44         4.44        76.21 
TCGA-49-4487 TCGA-49-4501 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       28.11        46.72         8.81        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6761 TCGA-50-5044 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
       29.26        11.64        20.48        14.96        25.81        49.28 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
        8.78        35.87        77.88         8.45        15.12        29.00 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       25.51        12.16         6.21         0.72         8.38        30.54 
TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 
       13.94        38.73        48.62         2.86        32.61        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 
       40.70        15.25        32.71        60.03        24.99        71.05 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.59         0.13         3.12         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 
        1.78         0.62         0.69         0.10         0.16         1.08 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8094 TCGA-55-8097 TCGA-55-8207 
        0.69         3.02         0.20         0.13         0.49         2.17 
TCGA-55-8299 TCGA-55-8506 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 
        7.07         0.36         0.10         4.80         0.49         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 
        3.45         1.08         1.02         1.55         5.29        39.95 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.47        47.77        19.53        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 
       39.22        40.93        20.65        39.09        87.98         2.04 
TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       42.90        28.44         0.99        20.02        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7973 TCGA-69-7980 
        5.69         4.60        13.87         6.12         7.56        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4668 TCGA-73-4677 TCGA-73-7498 
        3.25         2.50         4.21        15.35         1.25        20.42 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 
       19.50        38.50        32.09         5.88        40.11         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      104.15         8.48        88.11        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8660 
       10.75        10.55        32.68       208.60        39.72        10.55 
TCGA-78-8662 TCGA-86-7711 TCGA-86-8054 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 
      110.50        20.71        24.49         0.79        10.92        15.65 
TCGA-86-8279 TCGA-86-8358 TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8674 
       15.85         0.62         1.12         1.08         0.56        13.28 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         1.28        10.62        41.33         1.97 
TCGA-91-6831 TCGA-91-6836 TCGA-91-6840 TCGA-91-6849 TCGA-91-7771 TCGA-91-8497 
       10.16        13.71        12.23         1.15        16.18         5.69 
TCGA-91-8499 TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.18         7.17         9.76         6.08         1.12         0.07 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7938 
        4.34         4.04        31.66        64.60        63.52         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 
        0.72         5.95         5.36         4.80         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG 
       12.89        15.06         1.45         3.72         9.27         7.82 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N5 TCGA-MP-A4SW TCGA-MP-A4T4 TCGA-MP-A4T7 
        2.50         3.81        11.61        58.45        86.04         5.49 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A5C7 
       29.42        11.05         4.67        14.10        11.15        48.99 

  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
             0.03              0.07 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           223.96            208.60 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
           12.360            13.495 
[1] "0.0 - 224.0 (12.4)" "0.1 - 208.6 (13.5)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED"   "7Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" "7Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7Q GAIN WILD-TYPE"   "7Q GAIN MUTATED" "7Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D14V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  7Q GAIN MUTATED         1       45       53        17        24         36
  7Q GAIN WILD-TYPE       2       68       78        27        41         29
                   vv
clus                STAGE IIIB STAGE IV
  7Q GAIN MUTATED            5       14
  7Q GAIN WILD-TYPE          6        8
D14V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q GAIN MUTATED    56 114  17   7
  7Q GAIN WILD-TYPE  85 141  22  11
D14V4, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  T1              56                85
  T2             114               141
  T3              17                22
  T4               7                11
                   vv
clus                 N0  N1 N2+N3
  7Q GAIN MUTATED   112  34    42
  7Q GAIN WILD-TYPE 178  51    28
D14V5, multiclass
       clus
vv      7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  N0                112               178
  N1                 34                51
  N2+N3              42                28
                   vv
clus                 M0  M1 M1A M1B  MX
  7Q GAIN MUTATED   128  11   1   1  52
  7Q GAIN WILD-TYPE 186   7   0   2  63
D14V6, multiclass
D14V7, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED   103  92
  7Q GAIN WILD-TYPE 141 119
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED    103   92
  7Q GAIN WILD-TYPE  141  119
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  FEMALE             103               141
  MALE                92               119
D14V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7Q GAIN MUTATED                            6
  7Q GAIN WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7Q GAIN MUTATED                                  36
  7Q GAIN WILD-TYPE                                56
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q GAIN MUTATED                                                  134
  7Q GAIN WILD-TYPE                                                158
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7Q GAIN MUTATED                                            3
  7Q GAIN WILD-TYPE                                          1
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7Q GAIN MUTATED                                               8
  7Q GAIN WILD-TYPE                                             9
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7Q GAIN MUTATED                                0
  7Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7Q GAIN MUTATED                                    1
  7Q GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7Q GAIN MUTATED                              0                             6
  7Q GAIN WILD-TYPE                            2                            12
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  7Q GAIN MUTATED                                 0
  7Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7Q GAIN MUTATED                                               1
  7Q GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7Q GAIN MUTATED                              0
  7Q GAIN WILD-TYPE                            7
D14V9, multiclass
D14V10, binary
                   cls
clus                  0   1
  7Q GAIN MUTATED    12 183
  7Q GAIN WILD-TYPE   9 251
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q GAIN MUTATED     12  183
  7Q GAIN WILD-TYPE    9  251
     clus
vv    7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  NO               12                 9
  YES             183               251
D14V11, continuous
D14V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q GAIN MUTATED   125   4   3  10
  7Q GAIN WILD-TYPE 187   6   1   8
D14V13, multiclass
    clus
vv   7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  R0             125               187
  R1               4                 6
  R2               3                 1
  RX              10                 8

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
D15V1, survival
                   sevent
clus2                 0   1
  8P GAIN MUTATED    72  32
  8P GAIN WILD-TYPE 229  86
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              104               315 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
               32                86 
$`8P GAIN MUTATED`
TCGA-05-4250 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4432 
        3.98        20.05        14.93         8.98        30.02        25.02 
TCGA-05-5428 TCGA-35-5375 TCGA-38-4625 TCGA-38-4629 TCGA-38-4632 TCGA-38-6178 
       22.03         8.68        97.74        28.37        44.61        14.73 
TCGA-44-2656 TCGA-44-6147 TCGA-44-6778 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
       46.98        27.78        36.49        18.31        18.87        17.59 
TCGA-44-7672 TCGA-44-8119 TCGA-44-8120 TCGA-44-A47B TCGA-44-A47F TCGA-49-4512 
       23.64         3.22         8.55         9.44        11.08         5.16 
TCGA-49-6742 TCGA-50-5051 TCGA-50-5072 TCGA-50-5933 TCGA-50-5944 TCGA-50-5946 
       15.02        14.96         8.05        77.88        25.12        22.55 
TCGA-50-6592 TCGA-50-7109 TCGA-55-1592 TCGA-55-1596 TCGA-55-6969 TCGA-55-6970 
       25.51         8.38        23.05        45.17        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-7574 TCGA-55-7907 TCGA-55-8096 
        0.92        48.49         5.46         3.12         0.53         1.55 
TCGA-55-8206 TCGA-55-8301 TCGA-55-8615 TCGA-55-8620 TCGA-55-A48Z TCGA-55-A490 
        1.51         1.41         0.49         2.14         0.95         1.58 
TCGA-55-A494 TCGA-62-8398 TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A470 
        0.16        14.60        19.53        56.68        54.35        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1680 TCGA-64-5779 TCGA-69-7763 
       40.93        29.92        20.65        37.02        28.41        22.68 
TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 
       13.61         7.56         6.05         7.04         2.01        52.57 
TCGA-73-4659 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 
       23.38         4.27         1.32         5.39         1.25       163.10 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7158 TCGA-78-7159 TCGA-78-7535 
       20.58        35.93        24.99         5.88        40.11        31.20 
TCGA-86-7701 TCGA-86-8280 TCGA-86-8585 TCGA-86-8669 TCGA-86-8674 TCGA-91-6828 
        0.36         0.53         1.12         1.08        13.28        10.62 
TCGA-91-6831 TCGA-91-6840 TCGA-91-7771 TCGA-93-7347 TCGA-95-7567 TCGA-95-7948 
       10.16        12.23        16.18         9.76         5.36         4.34 
TCGA-97-7547 TCGA-97-7553 TCGA-97-8172 TCGA-97-A4M2 TCGA-99-8025 TCGA-99-8033 
       64.60        43.76         5.95         6.48        14.04         5.56 
TCGA-L9-A444 TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TE 
        0.20        49.35        37.35         5.29        31.20        29.42 
TCGA-MP-A4TF TCGA-MP-A4TH 
       11.05         4.67 

$`8P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4420 
       24.03        47.05         8.02        19.00         2.96        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       12.00        21.99        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02         4.96        28.96         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        0.46         7.36         5.95       120.79        37.71        49.02 
TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 
       35.28        11.64        26.30         4.37        43.50        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        34.06         6.21        23.74        33.30 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 
       28.37        12.59        23.77        10.78         9.93        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 
       21.63        23.18        63.72        32.45        16.41        14.60 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7670 TCGA-44-8117 TCGA-44-A479 
       10.68        12.03         7.17        29.00        12.66        15.95 
TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
       15.32         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        8.81        29.46        55.89        12.13        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
       11.64        20.48        71.47        70.55        25.81        31.04 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
       49.28         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
       15.12        18.64        29.00        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         0.72        34.26        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       13.94         9.21        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6975 TCGA-55-6979 TCGA-55-6980 
       32.61         0.79        42.48         3.88         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 TCGA-55-7725 
       38.47         0.59         1.12         0.13         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 
        1.02         1.02         0.79         1.78         0.62         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.69         0.10         1.02         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 
        3.02         0.20         1.41         0.85         0.13         0.49 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        2.17         7.07         0.72         0.95         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DF 
        3.45         1.08         1.02         0.03         0.92         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-8402 
        5.29         4.54        39.95        42.38        77.10        47.47 
TCGA-62-A46O TCGA-62-A46U TCGA-62-A46V TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 
       47.77        67.96        72.30        56.81        39.09        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       38.33        87.98         2.04        42.90        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7765 TCGA-69-7978 
        4.60        13.87         6.64         6.12         5.42         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4662 
        2.93        12.56         3.25         2.50         4.21        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 
       26.27        15.35        20.42        17.06        27.16         5.65 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       19.27        21.86        39.48        19.50        38.50        32.09 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 
       32.68       208.60        39.72        77.59        10.55       110.50 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       27.06        12.36        20.71        13.87        19.43        16.70 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       24.49         0.33         0.43         0.79        15.75        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-86-8671 
       15.65        15.85         0.62         0.85         1.45         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
        0.49        14.93         0.33         0.99         0.43         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
       41.33         1.97         2.60        13.71        27.68         7.36 
TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
        1.15         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         0.07         0.69         1.32 
TCGA-95-A4VK TCGA-97-7546 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
        4.04        31.66        63.52        25.48         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.36         2.83         4.80         0.49 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 
        8.91        12.89        15.06         1.45         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T4 
        9.37        20.42        11.61        86.14        58.45        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TI 
       58.85         5.49        41.59         2.43        10.09        14.10 
TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.15        19.13        48.99 

  8P GAIN MUTATED 8P GAIN WILD-TYPE 
             0.16              0.03 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           163.10            223.96 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
           14.665            12.360 
[1] "0.2 - 163.1 (14.7)" "0.0 - 224.0 (12.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED"   "8P GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE"   "8P GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8P GAIN WILD-TYPE"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "8P GAIN MUTATED"   "8P GAIN MUTATED"   "8P GAIN MUTATED" "8P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" "8P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D15V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  8P GAIN MUTATED         1       22       37        10        16         17
  8P GAIN WILD-TYPE       2       91       94        34        49         48
                   vv
clus                STAGE IIIB STAGE IV
  8P GAIN MUTATED            4        6
  8P GAIN WILD-TYPE          7       16
D15V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P GAIN MUTATED    25  72  12   3
  8P GAIN WILD-TYPE 116 183  27  15
D15V4, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  T1              25               116
  T2              72               183
  T3              12                27
  T4               3                15
                   vv
clus                 N0  N1 N2+N3
  8P GAIN MUTATED    72  19    19
  8P GAIN WILD-TYPE 218  66    51
D15V5, multiclass
       clus
vv      8P GAIN MUTATED 8P GAIN WILD-TYPE
  N0                 72               218
  N1                 19                66
  N2+N3              19                51
                   vv
clus                 M0  M1 M1A M1B  MX
  8P GAIN MUTATED    79   5   0   1  27
  8P GAIN WILD-TYPE 235  13   1   2  88
D15V6, multiclass
D15V7, binary
                   cls
clus                  0   1
  8P GAIN MUTATED    48  65
  8P GAIN WILD-TYPE 196 146
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED     48   65
  8P GAIN WILD-TYPE  196  146
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  FEMALE              48               196
  MALE                65               146
D15V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8P GAIN MUTATED                            4
  8P GAIN WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8P GAIN MUTATED                                  27
  8P GAIN WILD-TYPE                                65
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P GAIN MUTATED                                                   71
  8P GAIN WILD-TYPE                                                221
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8P GAIN MUTATED                                            0
  8P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8P GAIN MUTATED                                               3
  8P GAIN WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8P GAIN MUTATED                                0
  8P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8P GAIN MUTATED                                    0
  8P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8P GAIN MUTATED                              0                             6
  8P GAIN WILD-TYPE                            2                            12
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  8P GAIN MUTATED                                 0
  8P GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8P GAIN MUTATED                                               1
  8P GAIN WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8P GAIN MUTATED                              1
  8P GAIN WILD-TYPE                            6
D15V9, multiclass
D15V10, binary
                   cls
clus                  0   1
  8P GAIN MUTATED     7 106
  8P GAIN WILD-TYPE  14 328
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P GAIN MUTATED      7  106
  8P GAIN WILD-TYPE   14  328
     clus
vv    8P GAIN MUTATED 8P GAIN WILD-TYPE
  NO                7                14
  YES             106               328
D15V11, continuous
D15V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P GAIN MUTATED    74   5   1   3
  8P GAIN WILD-TYPE 238   5   3  15
D15V13, multiclass
    clus
vv   8P GAIN MUTATED 8P GAIN WILD-TYPE
  R0              74               238
  R1               5                 5
  R2               1                 3
  RX               3                15

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
D16V1, survival
                   sevent
clus2                 0   1
  8Q GAIN MUTATED   139  62
  8Q GAIN WILD-TYPE 162  56
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              201               218 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
               62                56 
$`8Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 
       50.07         3.98        45.01        37.02        47.05         8.02 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4432 TCGA-05-5420 
       20.05        14.93         8.98        30.02        25.02        15.02 
TCGA-05-5423 TCGA-05-5428 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 
        4.96        22.03         7.36         8.68        97.74        49.02 
TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2668 
       28.37        11.64        44.61        14.73        46.98         8.09 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5644 TCGA-44-6144 TCGA-44-6147 TCGA-44-6774 
       34.06         6.21        28.37        23.77        27.78        21.63 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       32.45        36.49        16.41         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-8120 TCGA-44-A47B 
       29.00        17.59        23.64         3.22         8.55         9.44 
TCGA-44-A47F TCGA-44-A4SU TCGA-49-4488 TCGA-49-4510 TCGA-49-4512 TCGA-49-6761 
       11.08         2.50        28.57        29.46         5.16        11.64 
TCGA-50-5051 TCGA-50-5066 TCGA-50-5072 TCGA-50-5931 TCGA-50-5933 TCGA-50-5941 
       14.96        31.04         8.05         8.78        77.88        18.64 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6673 
       25.12        22.55         3.88        25.51        11.05         0.72 
TCGA-50-7109 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 
        8.38        13.94         9.21        23.05        48.62        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        2.86        32.61         0.79        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 
       48.49         5.46         7.76        45.34        32.71        40.54 
TCGA-55-7283 TCGA-55-7574 TCGA-55-7907 TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 
        1.12         3.12         0.53         0.10         1.02         1.08 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8301 
        0.85         0.13         1.55         0.49         1.51         1.41 
TCGA-55-8302 TCGA-55-8511 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8620 
        0.72         0.30         6.97         0.49         1.58         2.14 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG 
        1.02         0.95         1.58         0.92         0.16         5.29 
TCGA-62-8395 TCGA-62-8398 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R 
       39.95        14.60        47.47        47.77        19.53        56.68 
TCGA-62-A46S TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
       54.35        39.22        40.93        29.92        20.65        39.09 
TCGA-64-1680 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 TCGA-69-7760 
       37.02         2.04        28.41         0.99        20.02         6.64 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7979 TCGA-69-8255 
       22.68        13.61         7.56         6.05         2.93         4.21 
TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4670 TCGA-73-4675 
        7.04         2.01        52.57        23.38         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7499 TCGA-78-7143 TCGA-78-7146 TCGA-78-7148 
        5.39         1.25        17.06       163.10         5.65        20.58 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7220 
       35.93        39.48         5.88        40.11         7.04        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 TCGA-78-8660 TCGA-78-8662 
       31.20         8.02        10.75        10.55        10.55       110.50 
TCGA-86-7701 TCGA-86-8054 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 
        0.36        24.49         0.53         0.85         1.12         1.08 
TCGA-86-8672 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-91-6828 
        0.49        13.28         0.33         0.99         0.43        10.62 
TCGA-91-6831 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-7771 TCGA-91-8499 
       10.16        13.71        12.23        27.68        16.18         1.18 
TCGA-93-7347 TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-7547 
        9.76         6.08         0.07         5.36         4.34        64.60 
TCGA-97-7553 TCGA-97-7938 TCGA-97-8172 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-8025 
       43.76         0.59         5.95         0.49         6.48        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD TCGA-L9-A443 
       15.06         1.45         5.56         3.72         9.44         3.81 
TCGA-L9-A444 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
        0.20        11.61        86.14        58.45        49.35        37.35 
TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF 
        5.29        31.20         2.43        10.09        29.42        11.05 
TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
        4.67        14.10        11.15 

$`8Q GAIN WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 TCGA-05-4415 
       19.92        14.01         9.96        24.03        19.00         2.96 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       29.95        12.00        21.99        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       24.00        15.02        28.96         0.99         2.04         0.46 
TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-7271 TCGA-38-A44F 
        5.95       120.79        37.71        35.28        26.30         4.37 
TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       43.50        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
        3.19        37.15        38.24        23.74        33.30        12.59 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-7659 
       10.78         9.93        11.90        23.18        63.72        14.60 
TCGA-44-7660 TCGA-44-7661 TCGA-44-8117 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47G 
       10.68        12.03        12.66        15.95        15.32         4.44 
TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        3.75        76.21        28.11        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       14.07        32.84         8.81        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       29.26        17.13        20.48        71.47        70.55        25.81 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
       49.28         9.27        35.87        21.47         8.45        15.12 
TCGA-50-5942 TCGA-50-6590 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-53-7624 
       29.00        42.31        12.16         6.21        33.37        34.26 
TCGA-53-7626 TCGA-55-1594 TCGA-55-6543 TCGA-55-6968 TCGA-55-6975 TCGA-55-6980 
       30.54        38.73         0.07        42.48         3.88         2.20 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 
       60.03        24.99        71.05        38.47         0.59         0.13 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7995 TCGA-55-8087 TCGA-55-8089 
        0.62         6.48         0.69         0.16         0.69         3.02 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8207 TCGA-55-8299 TCGA-55-8505 TCGA-55-8506 
        0.20         1.41         2.17         7.07         0.95         0.36 
TCGA-55-8510 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        7.46         0.10         4.80         1.61         3.45         1.08 
TCGA-55-A492 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8397 TCGA-62-8399 TCGA-62-A46U 
        0.03         1.55         4.54        42.38        77.10        67.96 
TCGA-62-A46V TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 
       72.30        56.81        55.40        38.33        87.98        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25        28.44        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7765 TCGA-69-7978 TCGA-69-7980 
        4.60        13.87         6.12         5.42         2.30        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-7498 
        3.25         2.50        29.95        26.27        15.35        20.42 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       27.16        19.27        21.86        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       32.09        22.29       104.15       223.96         8.48        88.11 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 
       53.33        28.96        32.68       208.60        39.72        77.59 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       27.06        12.36        20.71        13.87        19.43        16.70 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79        15.75        10.92        15.65 
TCGA-86-8279 TCGA-86-8358 TCGA-86-8668 TCGA-86-8671 TCGA-86-8673 TCGA-86-A4P8 
       15.85         0.62         1.45         0.56        14.93         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 
       41.33         1.97         2.60         7.36         1.15         6.44 
TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7348 TCGA-95-7039 TCGA-95-7944 
        5.69         1.45         7.17         4.18         1.12         0.69 
TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 
        1.32         4.04        31.66        63.52        25.48         5.95 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-A4M7 
        0.72         3.48         5.36         2.83         4.80         8.91 
TCGA-99-7458 TCGA-J2-8192 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
       12.89         5.03         9.27         7.82         6.97         2.50 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 
        9.37        20.42        86.04        58.85         5.49        41.59 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
             0.07              0.03 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           163.10            223.96 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
           11.050            14.055 
[1] "0.1 - 163.1 (11.1)" "0.0 - 224.0 (14.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8Q GAIN WILD-TYPE"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED"   "8Q GAIN MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "8Q GAIN MUTATED" "8Q GAIN WILD-TYPE" "8Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D16V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  8Q GAIN MUTATED         1       51       65        19        32         34
  8Q GAIN WILD-TYPE       2       62       66        25        33         31
                   vv
clus                STAGE IIIB STAGE IV
  8Q GAIN MUTATED            7       10
  8Q GAIN WILD-TYPE          4       12
D16V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q GAIN MUTATED    60 127  23   7
  8Q GAIN WILD-TYPE  81 128  16  11
D16V4, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  T1              60                81
  T2             127               128
  T3              23                16
  T4               7                11
                   vv
clus                 N0  N1 N2+N3
  8Q GAIN MUTATED   143  33    38
  8Q GAIN WILD-TYPE 147  52    32
D16V5, multiclass
       clus
vv      8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  N0                143               147
  N1                 33                52
  N2+N3              38                32
                   vv
clus                 M0  M1 M1A M1B  MX
  8Q GAIN MUTATED   149   8   0   2  58
  8Q GAIN WILD-TYPE 165  10   1   1  57
D16V6, multiclass
D16V7, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED   113 106
  8Q GAIN WILD-TYPE 131 105
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED    113  106
  8Q GAIN WILD-TYPE  131  105
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  FEMALE             113               131
  MALE               106               105
D16V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8Q GAIN MUTATED                            9
  8Q GAIN WILD-TYPE                          4
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8Q GAIN MUTATED                                  44
  8Q GAIN WILD-TYPE                                48
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q GAIN MUTATED                                                  146
  8Q GAIN WILD-TYPE                                                146
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8Q GAIN MUTATED                                            0
  8Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8Q GAIN MUTATED                                               7
  8Q GAIN WILD-TYPE                                            10
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8Q GAIN MUTATED                                1
  8Q GAIN WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8Q GAIN MUTATED                                    0
  8Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8Q GAIN MUTATED                              0                             9
  8Q GAIN WILD-TYPE                            2                             9
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  8Q GAIN MUTATED                                 1
  8Q GAIN WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8Q GAIN MUTATED                                               2
  8Q GAIN WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8Q GAIN MUTATED                              0
  8Q GAIN WILD-TYPE                            7
D16V9, multiclass
D16V10, binary
                   cls
clus                  0   1
  8Q GAIN MUTATED    11 208
  8Q GAIN WILD-TYPE  10 226
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q GAIN MUTATED     11  208
  8Q GAIN WILD-TYPE   10  226
     clus
vv    8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  NO               11                10
  YES             208               226
D16V11, continuous
D16V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q GAIN MUTATED   148   6   3   9
  8Q GAIN WILD-TYPE 164   4   1   9
D16V13, multiclass
    clus
vv   8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  R0             148               164
  R1               6                 4
  R2               3                 1
  RX               9                 9

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
D17V1, survival
                   sevent
clus2                 0   1
  9P GAIN MUTATED    30   7
  9P GAIN WILD-TYPE 271 111
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               37               382 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
                7               111 
$`9P GAIN MUTATED`
TCGA-05-4390 TCGA-05-4427 TCGA-44-6147 TCGA-44-6774 TCGA-44-8119 TCGA-44-A47F 
       37.02        26.01        27.78        21.63         3.22        11.08 
TCGA-50-5051 TCGA-50-6597 TCGA-55-6972 TCGA-55-7903 TCGA-55-7995 TCGA-55-8301 
       14.96        33.37        48.49         0.62         0.16         1.41 
TCGA-55-8514 TCGA-55-8620 TCGA-55-A48Z TCGA-55-A4DF TCGA-62-A46R TCGA-64-5775 
        6.97         2.14         0.95         1.55        56.68         2.04 
TCGA-69-7973 TCGA-69-7979 TCGA-69-8253 TCGA-69-A59K TCGA-73-4659 TCGA-73-4666 
        7.56         2.93         3.25         7.04        23.38        26.27 
TCGA-73-7499 TCGA-78-7163 TCGA-78-8662 TCGA-86-7953 TCGA-86-8669 TCGA-91-6828 
       17.06       223.96       110.50        19.43         1.08        10.62 
TCGA-95-7039 TCGA-95-7947 TCGA-97-7553 TCGA-97-7554 TCGA-L9-A444 TCGA-MP-A4TC 
        1.12         1.32        43.76        25.48         0.20         2.43 
TCGA-MP-A4TJ 
       11.15 

$`9P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       50.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        43.50        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       38.24        34.06         6.21        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 
       12.59        23.77        10.78         9.93        11.90        23.18 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 
       63.72        32.45        36.49        16.41        14.60        10.68 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
       12.03         7.17        18.31        18.87        29.00        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       23.64        12.66         8.55        15.95        15.32         9.44 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       17.13        11.64        20.48        71.47        70.55        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21         0.72         8.38        34.26        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       13.94         9.21        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 
        1.28         1.02         1.02         0.79         1.78         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 TCGA-55-8087 
        6.48         0.69         0.10         1.02         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 
        3.02         0.20         1.41         0.85         0.13         1.55 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8302 TCGA-55-8505 
        0.49         1.51         2.17         7.07         0.72         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 
        0.36         7.46         0.30         0.10         4.80         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 
        1.58         1.61         3.45         1.08         1.02         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 
        0.03         0.92         0.16         5.29         4.54        39.95 
TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P 
       42.38        14.60        77.10        47.47        47.77        19.53 
TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 
       54.35        67.96        72.30        39.22        40.93        29.92 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       56.81        20.65        39.09        55.40        37.02        38.33 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       87.98        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         6.64         6.12        22.68        13.61         5.42 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 
        6.05         2.30        12.56         2.50         4.21         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       52.57        29.95        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        1.25        20.42       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      104.15         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 
       53.33        10.75        28.96        10.55        32.68       208.60 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 
       39.72        77.59        10.55        27.06        12.36         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
       20.71        13.87        16.70        24.49         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79        15.75        10.92        15.65        15.85         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
        0.62         0.85         1.12         1.45         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
       41.33         1.97        10.16         2.60        13.71        12.23 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
       27.68         7.36         1.15        16.18         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        1.18         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        0.07         5.36         0.69         4.34         4.04        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       64.60        63.52         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        5.95         5.36         2.83         4.80         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        8.91        12.89        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV 
        2.50         3.81         9.37        20.42        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 
       58.45        49.35        37.35        86.04        58.85         5.49 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF 
        5.29        41.59        31.20        10.09        29.42        11.05 
TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        14.10        19.13        48.99 

  9P GAIN MUTATED 9P GAIN WILD-TYPE 
             0.16              0.03 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
           223.96            208.60 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
            10.62             13.02 
[1] "0.2 - 224.0 (10.6)" "0.0 - 208.6 (13.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED"   "9P GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE"   "9P GAIN MUTATED" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "9P GAIN MUTATED" "9P GAIN WILD-TYPE" "9P GAIN WILD-TYPE" 
[1] "hr=" "1.6"
D17V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  9P GAIN MUTATED         0       12       12         1         5          7
  9P GAIN WILD-TYPE       3      101      119        43        60         58
                   vv
clus                STAGE IIIB STAGE IV
  9P GAIN MUTATED            1        2
  9P GAIN WILD-TYPE         10       20
D17V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P GAIN MUTATED    18  17   4   1
  9P GAIN WILD-TYPE 123 238  35  17
D17V4, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  T1              18               123
  T2              17               238
  T3               4                35
  T4               1                17
                   vv
clus                 N0  N1 N2+N3
  9P GAIN MUTATED    28   4     7
  9P GAIN WILD-TYPE 262  81    63
D17V5, multiclass
       clus
vv      9P GAIN MUTATED 9P GAIN WILD-TYPE
  N0                 28               262
  N1                  4                81
  N2+N3               7                63
                   vv
clus                 M0  M1 M1A M1B  MX
  9P GAIN MUTATED    28   1   0   1  10
  9P GAIN WILD-TYPE 286  17   1   2 105
D17V6, multiclass
D17V7, binary
                   cls
clus                  0   1
  9P GAIN MUTATED    25  15
  9P GAIN WILD-TYPE 219 196
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED     25   15
  9P GAIN WILD-TYPE  219  196
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  FEMALE              25               219
  MALE                15               196
D17V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9P GAIN MUTATED                            1
  9P GAIN WILD-TYPE                         12
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9P GAIN MUTATED                                  11
  9P GAIN WILD-TYPE                                81
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P GAIN MUTATED                                                   23
  9P GAIN WILD-TYPE                                                269
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9P GAIN MUTATED                                            0
  9P GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9P GAIN MUTATED                                               1
  9P GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9P GAIN MUTATED                                0
  9P GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9P GAIN MUTATED                                    0
  9P GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9P GAIN MUTATED                              0                             3
  9P GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  9P GAIN MUTATED                                 1
  9P GAIN WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9P GAIN MUTATED                                               0
  9P GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9P GAIN MUTATED                              0
  9P GAIN WILD-TYPE                            7
D17V9, multiclass
D17V10, binary
                   cls
clus                  0   1
  9P GAIN MUTATED     2  38
  9P GAIN WILD-TYPE  19 396
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P GAIN MUTATED      2   38
  9P GAIN WILD-TYPE   19  396
     clus
vv    9P GAIN MUTATED 9P GAIN WILD-TYPE
  NO                2                19
  YES              38               396
D17V11, continuous
D17V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P GAIN MUTATED    26   0   1   2
  9P GAIN WILD-TYPE 286  10   3  16
D17V13, multiclass
    clus
vv   9P GAIN MUTATED 9P GAIN WILD-TYPE
  R0              26               286
  R1               0                10
  R2               1                 3
  RX               2                16

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
D18V1, survival
                   sevent
clus2                 0   1
  9Q GAIN MUTATED    22   5
  9Q GAIN WILD-TYPE 279 113
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               27               392 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
                5               113 
$`9Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4427 TCGA-44-6147 TCGA-44-8119 TCGA-44-A47F TCGA-50-5051 
       37.02        26.01        27.78         3.22        11.08        14.96 
TCGA-50-6590 TCGA-50-6597 TCGA-55-6972 TCGA-55-7995 TCGA-55-8091 TCGA-55-8301 
       42.31        33.37        48.49         0.16         1.41         1.41 
TCGA-55-8620 TCGA-55-A48Z TCGA-69-8253 TCGA-73-4666 TCGA-73-7499 TCGA-78-7160 
        2.14         0.95         3.25        26.27        17.06        22.29 
TCGA-78-7163 TCGA-78-7542 TCGA-78-8662 TCGA-86-7953 TCGA-86-8669 TCGA-91-6836 
      223.96        10.55       110.50        19.43         1.08        13.71 
TCGA-95-7947 TCGA-97-7553 TCGA-MP-A4TC 
        1.32        43.76         2.43 

$`9Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       50.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        43.50        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       38.24        34.06         6.21        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
       12.59        23.77        10.78         9.93        11.90        21.63 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
       23.18        63.72        32.45        36.49        16.41        14.60 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       10.68        12.03         7.17        18.31        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A 
       17.59        23.64        12.66         8.55        15.95        15.32 
TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        9.44         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       29.26        17.13        11.64        20.48        71.47        70.55 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       35.87        77.88        21.47         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       29.00        25.12        22.55         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21         0.72         8.38        34.26        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       13.94         9.21        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
        2.86         0.07        32.61         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 
        0.53         6.48         0.69         0.10         1.02         1.08 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 
        0.69         3.02         0.20         0.85         0.13         1.55 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8302 TCGA-55-8505 
        0.49         1.51         2.17         7.07         0.72         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.36         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        0.49         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        1.58         0.03         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 
        4.54        39.95        42.38        14.60        77.10        47.47 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.77        19.53        56.68        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       39.22        40.93        29.92        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        38.33        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
       14.04        12.66         5.69         4.60        13.87         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         5.42         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        2.30         2.93        12.56         2.50         4.21         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        29.95        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 
        1.32         5.39         1.25        20.42       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 
        8.02        53.33        10.75        28.96        32.68       208.60 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 
       39.72        77.59        10.55        27.06        12.36         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
       20.71        13.87        16.70        24.49         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79        15.75        10.92        15.65        15.85         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
        0.62         0.85         1.12         1.45         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 
       10.62        41.33         1.97        10.16         2.60        12.23 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
       27.68         7.36         1.15        16.18         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        1.18         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-95-A4VK 
        1.12         0.07         5.36         0.69         4.34         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       31.66        64.60        63.52        25.48         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 
        0.72         3.48         5.95         5.36         2.83         4.80 
TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        0.49         6.48         8.91        12.89        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        7.82         6.97         2.50         3.81         0.20         9.37 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
       20.42        11.61        86.14        58.45        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       86.04        58.85         5.49         5.29        41.59        31.20 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
       10.09        29.42        11.05         4.67        14.10        11.15 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
             0.16              0.03 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           223.96            208.60 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
           14.960            12.625 
[1] "0.2 - 224.0 (15.0)" "0.0 - 208.6 (12.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE"   "9Q GAIN MUTATED" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" "9Q GAIN WILD-TYPE" 
[1] "hr=" "2"  
D18V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  9Q GAIN MUTATED         0        6       12         0         4          2
  9Q GAIN WILD-TYPE       3      107      119        44        61         63
                   vv
clus                STAGE IIIB STAGE IV
  9Q GAIN MUTATED            1        3
  9Q GAIN WILD-TYPE         10       19
D18V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q GAIN MUTATED    11  15   1   1
  9Q GAIN WILD-TYPE 130 240  38  17
D18V4, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  T1              11               130
  T2              15               240
  T3               1                38
  T4               1                17
                   vv
clus                 N0  N1 N2+N3
  9Q GAIN MUTATED    19   4     4
  9Q GAIN WILD-TYPE 271  81    66
D18V5, multiclass
       clus
vv      9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  N0                 19               271
  N1                  4                81
  N2+N3               4                66
                   vv
clus                 M0  M1 M1A M1B  MX
  9Q GAIN MUTATED    19   2   0   1   6
  9Q GAIN WILD-TYPE 295  16   1   2 109
D18V6, multiclass
D18V7, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED    16  12
  9Q GAIN WILD-TYPE 228 199
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED     16   12
  9Q GAIN WILD-TYPE  228  199
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  FEMALE              16               228
  MALE                12               199
D18V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9Q GAIN MUTATED                            0
  9Q GAIN WILD-TYPE                         13
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9Q GAIN MUTATED                                   7
  9Q GAIN WILD-TYPE                                85
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q GAIN MUTATED                                                   19
  9Q GAIN WILD-TYPE                                                273
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9Q GAIN MUTATED                                            0
  9Q GAIN WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9Q GAIN MUTATED                                               1
  9Q GAIN WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9Q GAIN MUTATED                                0
  9Q GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9Q GAIN MUTATED                                    0
  9Q GAIN WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9Q GAIN MUTATED                              0                             1
  9Q GAIN WILD-TYPE                            2                            17
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  9Q GAIN MUTATED                                 0
  9Q GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9Q GAIN MUTATED                                               0
  9Q GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9Q GAIN MUTATED                              0
  9Q GAIN WILD-TYPE                            7
D18V9, multiclass
D18V10, binary
                   cls
clus                  0   1
  9Q GAIN MUTATED     1  27
  9Q GAIN WILD-TYPE  20 407
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q GAIN MUTATED      1   27
  9Q GAIN WILD-TYPE   20  407
     clus
vv    9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  NO                1                20
  YES              27               407
D18V11, continuous
D18V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q GAIN MUTATED    20   0   0   1
  9Q GAIN WILD-TYPE 292  10   4  17
D18V13, multiclass
    clus
vv   9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  R0              20               292
  R1               0                10
  R2               0                 4
  RX               1                17

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
D19V1, survival
                    sevent
clus2                  0   1
  10P GAIN MUTATED    70  24
  10P GAIN WILD-TYPE 231  94
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                94                325 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
                24                 94 
$`10P GAIN MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 
       45.01        37.02        20.05         2.96        14.93        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 TCGA-05-5420 TCGA-05-5425 
       12.00        30.02        25.02        25.02        15.02        28.96 
TCGA-35-4122 TCGA-38-4632 TCGA-44-3396 TCGA-44-3918 TCGA-44-6144 TCGA-44-6145 
        7.36        44.61        37.15        34.06        23.77        10.78 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8120 TCGA-49-4487 TCGA-50-5049 
       17.59        23.64        12.66         8.55        28.11        70.55 
TCGA-50-5051 TCGA-50-5068 TCGA-50-5933 TCGA-50-5946 TCGA-50-6592 TCGA-50-7109 
       14.96        49.28        77.88        22.55        25.51         8.38 
TCGA-53-7624 TCGA-53-7813 TCGA-55-6642 TCGA-55-6970 TCGA-55-6972 TCGA-55-6978 
       34.26        13.94        32.61        15.25        48.49         5.46 
TCGA-55-7283 TCGA-55-7910 TCGA-55-8092 TCGA-55-8302 TCGA-55-8511 TCGA-55-8615 
        1.12         6.48         0.85         0.72         0.30         0.49 
TCGA-55-8620 TCGA-62-8398 TCGA-62-A46S TCGA-62-A470 TCGA-64-1678 TCGA-69-7763 
        2.14        14.60        54.35        39.22        39.09        22.68 
TCGA-69-7979 TCGA-71-6725 TCGA-73-4658 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 
        2.93         2.01        52.57         4.27         1.32         1.25 
TCGA-78-7149 TCGA-78-7154 TCGA-78-7155 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       35.93        19.50        38.50        40.11        22.29         7.04 
TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-78-8662 TCGA-86-7701 TCGA-86-7711 
       10.75        10.55        32.68       110.50         0.36        20.71 
TCGA-86-7713 TCGA-86-7955 TCGA-86-8358 TCGA-86-8672 TCGA-86-8673 TCGA-86-A456 
       13.87        16.70         0.62         0.49        14.93         0.33 
TCGA-86-A4D0 TCGA-91-6829 TCGA-91-6836 TCGA-91-7771 TCGA-93-8067 TCGA-95-7567 
        0.99        41.33        13.71        16.18         6.08         5.36 
TCGA-95-7944 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-8179 TCGA-99-8025 
        0.69        43.76        25.48         5.95         0.49        14.04 
TCGA-J2-8194 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 
        3.72         3.81         0.20         9.37        20.42        11.61 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TD TCGA-MP-A4TE 
        5.49         5.29        10.09        29.42 

$`10P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4418 TCGA-05-4425 TCGA-05-4426 
       47.05         8.02        19.00         8.98        21.99        26.01 
TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 
       26.01        24.00        15.02         4.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 
       37.71        49.02        28.37        35.28        11.64        14.73 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        43.50        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3398 
       24.36        42.08        42.77         3.19         8.09        38.24 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6146 
        6.21        23.74        33.30        28.37        12.59         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       18.31        18.87        29.00         3.22        15.95        15.32 
TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        9.44        11.08         4.44         3.75         2.50        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
        8.81        29.46         5.16        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 
       29.26        17.13        11.64        20.48        71.47        25.81 
TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       31.04         8.05         9.27         8.78        35.87        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
        8.45        15.12        18.64        29.00        25.12        42.31 
TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
        3.88        11.05        12.16         6.21        33.37         0.72 
TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 
       30.54         9.21        23.05        38.73        48.62        45.17 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
        2.86         0.07         0.79        42.48        40.70         0.92 
TCGA-55-6975 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        3.88         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 
       24.99        40.54        71.05        38.47         0.59         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        1.78         0.62         0.53         0.69         0.10         1.02 
TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 
        0.16         1.08         0.69         3.02         0.20         1.41 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.13         1.55         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8512 TCGA-55-8513 
        1.41         0.95         0.36         7.46         0.10         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        6.97         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF 
        0.95         1.58         0.03         0.92         0.16         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-8402 
        5.29         4.54        39.95        42.38        77.10        47.47 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46U TCGA-62-A46V TCGA-62-A471 
       47.77        19.53        56.68        67.96        72.30        40.93 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       29.92        56.81        20.65        55.40        37.02        38.33 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        4.60        13.87         6.64         6.12        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        7.56         6.05         2.30        12.56         3.25         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        4.21         7.04        23.38        29.95        26.27        15.35 
TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        5.39        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 
       19.27        20.58        21.86        39.48        24.99        32.09 
TCGA-78-7158 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        5.88       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-8640 TCGA-78-8648 
       31.20         8.02        53.33        28.96       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7953 TCGA-86-8054 
       77.59        10.55        27.06        12.36        19.43        24.49 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79        15.75        10.92        15.65 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
       15.85         0.53         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8674 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 
        0.56        13.28         0.43         1.28        10.62         1.97 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
       10.16         2.60        12.23        27.68         7.36         1.15 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 
        6.44         5.69         1.18         1.45         7.17         9.76 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        4.18         1.12         0.07         1.32         4.34         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       31.66        64.60        63.52         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         5.36         2.83         4.80         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD 
       12.89        15.06         1.45         5.56         5.03         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-MP-A4SV TCGA-MP-A4SW 
        9.27         7.82         6.97         2.50        86.14        58.45 
TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T9 TCGA-MP-A4TA 
       49.35        37.35        86.04        58.85        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
        2.43        11.05         4.67        14.10        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  10P GAIN MUTATED 10P GAIN WILD-TYPE 
              0.20               0.03 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
            110.50             223.96 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
             14.93              12.13 
[1] "0.2 - 110.5 (14.9)" "0.0 - 224.0 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE"   "10P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "10P GAIN MUTATED"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "10P GAIN MUTATED" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"10P GAIN WILD-TYPE"   "10P GAIN MUTATED"   "10P GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "10P GAIN MUTATED"   "10P GAIN MUTATED" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10P GAIN WILD-TYPE" "10P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D19V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  10P GAIN MUTATED         1       23       33         9        10         14
  10P GAIN WILD-TYPE       2       90       98        35        55         51
                    vv
clus                 STAGE IIIB STAGE IV
  10P GAIN MUTATED            4        7
  10P GAIN WILD-TYPE          7       15
D19V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P GAIN MUTATED    22  63  11   5
  10P GAIN WILD-TYPE 119 192  28  13
D19V4, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  T1               22                119
  T2               63                192
  T3               11                 28
  T4                5                 13
                    vv
clus                  N0  N1 N2+N3
  10P GAIN MUTATED    74  10    16
  10P GAIN WILD-TYPE 216  75    54
D19V5, multiclass
       clus
vv      10P GAIN MUTATED 10P GAIN WILD-TYPE
  N0                  74                216
  N1                  10                 75
  N2+N3               16                 54
                    vv
clus                  M0  M1 M1A M1B  MX
  10P GAIN MUTATED    71   6   0   1  23
  10P GAIN WILD-TYPE 243  12   1   2  92
D19V6, multiclass
D19V7, binary
                    cls
clus                   0   1
  10P GAIN MUTATED    40  61
  10P GAIN WILD-TYPE 204 150
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED     40   61
  10P GAIN WILD-TYPE  204  150
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  FEMALE               40                204
  MALE                 61                150
D19V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10P GAIN MUTATED                            3
  10P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10P GAIN MUTATED                                  24
  10P GAIN WILD-TYPE                                68
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P GAIN MUTATED                                                   62
  10P GAIN WILD-TYPE                                                230
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10P GAIN MUTATED                                            0
  10P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10P GAIN MUTATED                                               5
  10P GAIN WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10P GAIN MUTATED                                0
  10P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10P GAIN MUTATED                                    1
  10P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10P GAIN MUTATED                              0                             6
  10P GAIN WILD-TYPE                            2                            12
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  10P GAIN MUTATED                                 0
  10P GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10P GAIN MUTATED                                               0
  10P GAIN WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10P GAIN MUTATED                              0
  10P GAIN WILD-TYPE                            7
D19V9, multiclass
D19V10, binary
                    cls
clus                   0   1
  10P GAIN MUTATED     2  99
  10P GAIN WILD-TYPE  19 335
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P GAIN MUTATED      2   99
  10P GAIN WILD-TYPE   19  335
     clus
vv    10P GAIN MUTATED 10P GAIN WILD-TYPE
  NO                 2                 19
  YES               99                335
D19V11, continuous
D19V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P GAIN MUTATED    66   2   0   8
  10P GAIN WILD-TYPE 246   8   4  10
D19V13, multiclass
    clus
vv   10P GAIN MUTATED 10P GAIN WILD-TYPE
  R0               66                246
  R1                2                  8
  R2                0                  4
  RX                8                 10

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
D20V1, survival
                    sevent
clus2                  0   1
  10Q GAIN MUTATED    47  21
  10Q GAIN WILD-TYPE 254  97
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                68                351 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                21                 97 
$`10Q GAIN MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-05-4415 TCGA-05-4417 TCGA-05-4422 TCGA-05-4430 
       45.01        37.02         2.96        14.93        12.00        25.02 
TCGA-05-4432 TCGA-05-5420 TCGA-05-5425 TCGA-35-4122 TCGA-38-4632 TCGA-44-3918 
       25.02        15.02        28.96         7.36        44.61        34.06 
TCGA-44-6144 TCGA-44-6145 TCGA-44-7671 TCGA-49-4487 TCGA-50-5049 TCGA-50-5051 
       23.77        10.78        17.59        28.11        70.55        14.96 
TCGA-50-5068 TCGA-50-5933 TCGA-50-5946 TCGA-50-6593 TCGA-53-7624 TCGA-55-6642 
       49.28        77.88        22.55        11.05        34.26        32.61 
TCGA-55-6970 TCGA-55-6972 TCGA-55-6978 TCGA-55-7283 TCGA-55-8302 TCGA-55-8615 
       15.25        48.49         5.46         1.12         0.72         0.49 
TCGA-62-8398 TCGA-62-A46S TCGA-62-A470 TCGA-69-7763 TCGA-71-6725 TCGA-73-4658 
       14.60        54.35        39.22        22.68         2.01        52.57 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 TCGA-78-7149 TCGA-78-7154 TCGA-78-7159 
        4.27         1.32         1.25        35.93        19.50        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-8662 TCGA-86-7701 TCGA-86-7713 TCGA-86-8279 
       22.29         7.04       110.50         0.36        13.87        15.85 
TCGA-86-8358 TCGA-86-8672 TCGA-86-8673 TCGA-86-A456 TCGA-86-A4D0 TCGA-91-7771 
        0.62         0.49        14.93         0.33         0.99        16.18 
TCGA-95-7567 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-8179 TCGA-99-8025 
        5.36        43.76        25.48         5.95         0.49        14.04 
TCGA-J2-8194 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TD 
        3.72        20.42        11.61         5.49         5.29        10.09 
TCGA-MP-A4TE TCGA-MP-A5C7 
       29.42        48.99 

$`10Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 
       47.05         8.02        19.00        20.05         8.98        29.95 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 
       30.02        21.99        26.01        26.01        24.00        15.02 
TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
        4.96        22.03         0.99         2.04         0.46         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        38.24         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       33.30        28.37        12.59         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       21.63        23.18        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       14.60        10.68        12.03         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
       29.00        23.64        12.66         3.22         8.55        15.95 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.32         9.44        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        29.26        17.13        11.64        20.48        71.47 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        31.04         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       21.47         8.45        15.12        18.64        29.00        25.12 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
        0.72         8.38        30.54        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 
       38.73        48.62        45.17         2.86         0.07         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6975 TCGA-55-6979 TCGA-55-6980 
       42.48        40.70         0.92         3.88         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         0.59         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 
        6.48         0.69         0.10         1.02         0.16         1.08 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 
        0.69         3.02         0.20         1.41         0.85         0.13 
TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 
        1.55         0.49         1.51         2.17         7.07         1.41 
TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        0.95         0.36         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 
        1.55         5.29         4.54        39.95        42.38        77.10 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46U TCGA-62-A46V 
       47.47        47.77        19.53        56.68        67.96        72.30 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       40.93        29.92        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        38.33        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       12.66         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         5.42         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 
       12.56         3.25         2.50         4.21         7.04        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 
       29.95        26.27        15.35         5.39        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
      163.10        27.16         5.65        19.27        20.58        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7162 
       39.48        24.99        38.50        32.09         5.88       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 
       53.33        10.75        28.96        10.55        32.68       208.60 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 
       39.72        77.59        10.55        27.06        12.36        20.71 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
       19.43        16.70        24.49         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 
       15.75        10.92        15.65         0.53         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8674 TCGA-86-A4P7 TCGA-86-A4P8 
        1.45         1.08         0.56        13.28         0.43         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33         1.97        10.16         2.60        13.71 
TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 
       12.23        27.68         7.36         1.15         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        1.18         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        1.12         0.07         0.69         1.32         4.34         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       31.66        64.60        63.52         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         5.36         2.83         4.80         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD 
       12.89        15.06         1.45         5.56         5.03         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
        9.37        86.14        58.45        49.35        37.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TF TCGA-MP-A4TH 
       58.85        41.59        31.20         2.43        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       14.10        11.15        19.13 

  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
              0.33               0.03 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            110.50             223.96 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
            15.135             12.130 
[1] "0.3 - 110.5 (15.1)" "0.0 - 224.0 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
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        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
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        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
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        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
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        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
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  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
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"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
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        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
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        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
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        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED"   "10Q GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "10Q GAIN MUTATED"   "10Q GAIN MUTATED" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10Q GAIN WILD-TYPE"   "10Q GAIN MUTATED" 
[1] "hr=" "1"  
D20V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  10Q GAIN MUTATED         0       17       20         5         7         14
  10Q GAIN WILD-TYPE       3       96      111        39        58         51
                    vv
clus                 STAGE IIIB STAGE IV
  10Q GAIN MUTATED            3        6
  10Q GAIN WILD-TYPE          8       16
D20V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q GAIN MUTATED    16  43   9   4
  10Q GAIN WILD-TYPE 125 212  30  14
D20V4, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  T1               16                125
  T2               43                212
  T3                9                 30
  T4                4                 14
                    vv
clus                  N0  N1 N2+N3
  10Q GAIN MUTATED    48   7    16
  10Q GAIN WILD-TYPE 242  78    54
D20V5, multiclass
       clus
vv      10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  N0                  48                242
  N1                   7                 78
  N2+N3               16                 54
                    vv
clus                  M0  M1 M1A M1B  MX
  10Q GAIN MUTATED    52   6   0   0  14
  10Q GAIN WILD-TYPE 262  12   1   3 101
D20V6, multiclass
D20V7, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED    27  45
  10Q GAIN WILD-TYPE 217 166
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED     27   45
  10Q GAIN WILD-TYPE  217  166
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  FEMALE               27                217
  MALE                 45                166
D20V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10Q GAIN MUTATED                            2
  10Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10Q GAIN MUTATED                                  19
  10Q GAIN WILD-TYPE                                73
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q GAIN MUTATED                                                   41
  10Q GAIN WILD-TYPE                                                251
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10Q GAIN MUTATED                                            0
  10Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10Q GAIN MUTATED                                               3
  10Q GAIN WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10Q GAIN MUTATED                                0
  10Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10Q GAIN MUTATED                                    1
  10Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10Q GAIN MUTATED                              0                             6
  10Q GAIN WILD-TYPE                            2                            12
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  10Q GAIN MUTATED                                 0
  10Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10Q GAIN MUTATED                                               0
  10Q GAIN WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10Q GAIN MUTATED                              0
  10Q GAIN WILD-TYPE                            7
D20V9, multiclass
D20V10, binary
                    cls
clus                   0   1
  10Q GAIN MUTATED     2  70
  10Q GAIN WILD-TYPE  19 364
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q GAIN MUTATED      2   70
  10Q GAIN WILD-TYPE   19  364
     clus
vv    10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  NO                 2                 19
  YES               70                364
D20V11, continuous
D20V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q GAIN MUTATED    49   1   0   5
  10Q GAIN WILD-TYPE 263   9   4  13
D20V13, multiclass
    clus
vv   10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  R0               49                263
  R1                1                  9
  R2                0                  4
  RX                5                 13

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
D21V1, survival
                    sevent
clus2                  0   1
  11P GAIN MUTATED    57  26
  11P GAIN WILD-TYPE 244  92
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                83                336 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                26                 92 
$`11P GAIN MUTATED`
TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4420 TCGA-05-4425 TCGA-05-4432 
        8.02         2.96        14.93        29.95        21.99        25.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-38-4628 TCGA-38-4629 TCGA-44-2659 
       15.02         4.96         0.99        49.02        28.37        44.94 
TCGA-44-5645 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 TCGA-44-7661 TCGA-44-7669 
       12.59        23.18        36.49        16.41        12.03        18.87 
TCGA-44-7670 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A4SU 
       29.00         3.22        15.95        15.32         9.44         2.50 
TCGA-49-4488 TCGA-49-4512 TCGA-49-6743 TCGA-50-5933 TCGA-50-6597 TCGA-53-7813 
       28.57         5.16        12.13        77.88        33.37        13.94 
TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 TCGA-55-6712 TCGA-55-6971 TCGA-55-6975 
       23.05        38.73         0.07         0.79         0.92         3.88 
TCGA-55-6979 TCGA-55-6981 TCGA-55-7995 TCGA-55-8092 TCGA-55-8096 TCGA-55-8514 
        7.76        45.34         0.16         0.85         1.55         6.97 
TCGA-55-8620 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8399 TCGA-62-8402 
        2.14         0.16         1.55         4.54        77.10        47.47 
TCGA-62-A470 TCGA-64-1677 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 
       39.22        20.65        38.33         2.04        28.41         0.99 
TCGA-67-3771 TCGA-67-6215 TCGA-69-7973 TCGA-69-7974 TCGA-71-6725 TCGA-73-4662 
       20.02         5.69         7.56         6.05         2.01        29.95 
TCGA-78-7163 TCGA-78-7167 TCGA-78-7542 TCGA-78-8655 TCGA-86-7955 TCGA-86-8278 
      223.96        88.11        10.55        77.59        16.70        15.65 
TCGA-86-8280 TCGA-86-A4P7 TCGA-91-6829 TCGA-91-6840 TCGA-91-6848 TCGA-93-7348 
        0.53         0.43        41.33        12.23         7.36         4.18 
TCGA-95-7043 TCGA-97-7554 TCGA-97-7937 TCGA-97-8177 TCGA-99-8033 TCGA-L9-A443 
        0.07        25.48         5.95         4.80         5.56         3.81 
TCGA-MN-A4N4 TCGA-MP-A4T6 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TJ 
       20.42        58.85        31.20         2.43        11.15 

$`11P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 
        9.96        24.03        47.05        19.00        20.05         8.98 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       12.00        30.02        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5425 TCGA-05-5428 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       15.02        28.96        22.03         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 
        5.95         8.68        97.74       120.79        37.71        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       33.30        28.37        23.77        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 TCGA-44-7660 
       11.90        21.63        63.72        32.45        14.60        10.68 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8120 
        7.17        18.31        17.59        23.64        12.66         8.55 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 
       11.08         4.44         3.75        76.21        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       55.89        15.02        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
        3.88        25.51        11.05        12.16         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-1596 
        8.38        34.26        30.54         9.21        48.62        45.17 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 
        2.86        32.61        42.48        40.70        15.25        48.49 
TCGA-55-6978 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        5.46         2.20        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       71.05        38.47         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        1.32         1.28         1.02         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        0.62         0.53         6.48         0.69         0.10         1.02 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8094 
        1.08         0.69         3.02         0.20         1.41         0.13 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        0.49         1.51         2.17         7.07         1.41         0.72 
TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        0.95         0.36         7.46         0.30         0.10         4.80 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        0.49         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8395 
        0.95         1.58         0.03         0.92         5.29        39.95 
TCGA-62-8397 TCGA-62-8398 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       42.38        14.60        47.77        19.53        56.68        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 
       67.96        72.30        40.93        29.92        56.81        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       55.40        37.02        87.98        42.90        51.25        28.44 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
       18.84        14.04        12.66         4.60        13.87         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7978 TCGA-69-7979 
        6.12        22.68        13.61         5.42         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 
       12.56         3.25         2.50         4.21         7.04        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
        7.04       104.15         8.48        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       53.33        10.75        28.96        32.68       208.60        39.72 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 
       10.55       110.50        27.06        12.36         0.36        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
       13.87        19.43        24.49         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
       15.75        10.92        15.85         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 
        1.45         1.08         0.56         0.49        14.93        13.28 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 
        0.33         0.99         1.28        10.62         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
        2.60        13.71        27.68         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 
        5.69         1.18         1.45         7.17         9.76         6.08 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        1.12         5.36         0.69         1.32         4.34         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 
       31.66        64.60        63.52        43.76         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M2 
        3.48         5.95         5.36         2.83         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 
        8.91        12.89        14.04        15.06         1.45         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY 
        0.20         9.37        11.61        86.14        58.45        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TD 
       37.35        86.04         5.49         5.29        41.59        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
       29.42        11.05         4.67        14.10        19.13        48.99 

  11P GAIN MUTATED 11P GAIN WILD-TYPE 
              0.07               0.03 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            223.96             208.60 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
            12.230             12.775 
[1] "0.1 - 224.0 (12.2)" "0.0 - 208.6 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "11P GAIN MUTATED"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED" "11P GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "11P GAIN MUTATED" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"11P GAIN WILD-TYPE"   "11P GAIN MUTATED"   "11P GAIN MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE"   "11P GAIN MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11P GAIN WILD-TYPE" "11P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D21V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  11P GAIN MUTATED         0       21       23         5        11         18
  11P GAIN WILD-TYPE       3       92      108        39        54         47
                    vv
clus                 STAGE IIIB STAGE IV
  11P GAIN MUTATED            4        5
  11P GAIN WILD-TYPE          7       17
D21V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P GAIN MUTATED    28  48   4   5
  11P GAIN WILD-TYPE 113 207  35  13
D21V4, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  T1               28                113
  T2               48                207
  T3                4                 35
  T4                5                 13
                    vv
clus                  N0  N1 N2+N3
  11P GAIN MUTATED    51  13    20
  11P GAIN WILD-TYPE 239  72    50
D21V5, multiclass
       clus
vv      11P GAIN MUTATED 11P GAIN WILD-TYPE
  N0                  51                239
  N1                  13                 72
  N2+N3               20                 50
                    vv
clus                  M0  M1 M1A M1B  MX
  11P GAIN MUTATED    55   4   0   1  26
  11P GAIN WILD-TYPE 259  14   1   2  89
D21V6, multiclass
D21V7, binary
                    cls
clus                   0   1
  11P GAIN MUTATED    55  32
  11P GAIN WILD-TYPE 189 179
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED     55   32
  11P GAIN WILD-TYPE  189  179
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  FEMALE               55                189
  MALE                 32                179
D21V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11P GAIN MUTATED                            2
  11P GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11P GAIN MUTATED                                  16
  11P GAIN WILD-TYPE                                76
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P GAIN MUTATED                                                   58
  11P GAIN WILD-TYPE                                                234
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11P GAIN MUTATED                                            1
  11P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11P GAIN MUTATED                                               3
  11P GAIN WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11P GAIN MUTATED                                1
  11P GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11P GAIN MUTATED                                    1
  11P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11P GAIN MUTATED                              0                             4
  11P GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  11P GAIN MUTATED                                 1
  11P GAIN WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11P GAIN MUTATED                                               0
  11P GAIN WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11P GAIN MUTATED                              0
  11P GAIN WILD-TYPE                            7
D21V9, multiclass
D21V10, binary
                    cls
clus                   0   1
  11P GAIN MUTATED     3  84
  11P GAIN WILD-TYPE  18 350
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P GAIN MUTATED      3   84
  11P GAIN WILD-TYPE   18  350
     clus
vv    11P GAIN MUTATED 11P GAIN WILD-TYPE
  NO                 3                 18
  YES               84                350
D21V11, continuous
D21V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P GAIN MUTATED    58   2   1   3
  11P GAIN WILD-TYPE 254   8   3  15
D21V13, multiclass
    clus
vv   11P GAIN MUTATED 11P GAIN WILD-TYPE
  R0               58                254
  R1                2                  8
  R2                1                  3
  RX                3                 15

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
D22V1, survival
                    sevent
clus2                  0   1
  11Q GAIN MUTATED    73  28
  11Q GAIN WILD-TYPE 228  90
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
               101                318 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
                28                 90 
$`11Q GAIN MUTATED`
TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 TCGA-05-4425 TCGA-05-4432 TCGA-05-5423 
        8.02         2.96        29.95        21.99        25.02         4.96 
TCGA-05-5429 TCGA-38-4628 TCGA-38-4629 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 
        0.99        49.02        28.37        46.98        44.94        42.08 
TCGA-44-5645 TCGA-44-6774 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 
       12.59        21.63        23.18        36.49        16.41        10.68 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 TCGA-44-8117 TCGA-44-8119 
       12.03         7.17        18.87        29.00        12.66         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A4SU TCGA-49-4512 TCGA-49-6743 
       15.95        15.32         9.44         2.50         5.16        12.13 
TCGA-50-5933 TCGA-50-6597 TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
       77.88        33.37        34.26        13.94        23.05        38.73 
TCGA-55-1596 TCGA-55-6543 TCGA-55-6712 TCGA-55-6971 TCGA-55-6975 TCGA-55-6979 
       45.17         0.07         0.79         0.92         3.88         7.76 
TCGA-55-6981 TCGA-55-7910 TCGA-55-7994 TCGA-55-8092 TCGA-55-8096 TCGA-55-8506 
       45.34         6.48         1.02         0.85         1.55         0.36 
TCGA-55-8510 TCGA-55-8514 TCGA-55-8616 TCGA-55-8620 TCGA-55-A494 TCGA-55-A4DF 
        7.46         6.97         1.58         2.14         0.16         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8399 TCGA-62-8402 TCGA-64-1677 TCGA-64-1681 
        5.29         4.54        77.10        47.47        20.65        38.33 
TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 TCGA-67-6215 TCGA-69-7973 
        2.04        28.41         0.99        20.02         5.69         7.56 
TCGA-69-7974 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 
        6.05         7.04         2.01        52.57        26.27        15.35 
TCGA-73-4676 TCGA-78-7154 TCGA-78-7155 TCGA-78-7163 TCGA-78-7167 TCGA-78-7535 
        5.39        19.50        38.50       223.96        88.11        31.20 
TCGA-78-8655 TCGA-78-8662 TCGA-86-7955 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
       77.59       110.50        16.70        15.65        15.85         0.53 
TCGA-86-8359 TCGA-86-A4P7 TCGA-91-6829 TCGA-91-6840 TCGA-91-6848 TCGA-91-A4BC 
        0.85         0.43        41.33        12.23         7.36         1.45 
TCGA-93-7348 TCGA-95-7043 TCGA-97-7553 TCGA-97-7937 TCGA-97-8177 TCGA-99-8033 
        4.18         0.07        43.76         5.95         4.80         5.56 
TCGA-L9-A443 TCGA-MN-A4N4 TCGA-MP-A4T6 TCGA-MP-A4TA TCGA-MP-A4TC 
        3.81        20.42        58.85        31.20         2.43 

$`11Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 
        9.96        24.03        47.05        19.00        20.05        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        12.00        30.02        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 TCGA-05-5715 
       24.00        15.02        15.02        28.96        22.03         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.46         7.36         5.95         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       37.71        35.28        11.64        44.61        14.73        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
        4.37        43.50        13.15        24.36        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       33.30        28.37        23.77        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 TCGA-44-7667 TCGA-44-7671 
       11.90        63.72        32.45        14.60        18.31        17.59 
TCGA-44-7672 TCGA-44-8120 TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 
       23.64         8.55        11.08         4.44         3.75        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       28.11        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 
       32.84         8.81        29.46        55.89        15.02        29.26 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       17.13        11.64        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       25.81        31.04        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       25.12        22.55        42.31         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-A4EZ 
       12.16         6.21         0.72         8.38        30.54         9.21 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
       48.62         2.86        32.61        42.48        40.70        15.25 
TCGA-55-6972 TCGA-55-6978 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
       48.49         5.46         2.20        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 
        1.78         0.62         0.53         0.69         0.10         0.16 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8094 
        1.08         0.69         3.02         0.20         1.41         0.13 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        0.49         1.51         2.17         7.07         1.41         0.72 
TCGA-55-8505 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 
        0.95         0.30         0.10         4.80         0.49         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-A46O TCGA-62-A46P 
        0.92        39.95        42.38        14.60        47.77        19.53 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 
       56.68        54.35        67.96        72.30        39.22        40.93 
TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 
       29.92        56.81        39.09        55.40        37.02        87.98 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       42.90        51.25        28.44        18.84        14.04        12.66 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        4.60        13.87         6.64         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        5.42         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 TCGA-73-4677 
        4.21        23.38        29.95         4.27         1.32         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 
       20.58        35.93        21.86        39.48        24.99        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
        5.88        40.11        22.29         7.04       104.15         8.48 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       26.53         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 
       32.68       208.60        39.72        10.55        27.06        12.36 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
        0.36        20.71        13.87        19.43        24.49         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8358 TCGA-86-8585 
        0.43         0.79        15.75        10.92         0.62         1.12 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 
        1.45         1.08         0.56         0.49        14.93        13.28 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 
        0.33         0.99         1.28        10.62         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
        2.60        13.71        27.68         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 
        5.69         1.18         7.17         9.76         6.08         1.12 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        5.36         0.69         1.32         4.34         4.04        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       64.60        63.52        25.48         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         5.36         2.83         0.49         6.48         8.91 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 
       12.89        14.04        15.06         1.45         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 
        9.44         9.27         7.82         6.97         2.50         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
        9.37        11.61        86.14        58.45        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TD TCGA-MP-A4TE 
       86.04         5.49         5.29        41.59        10.09        29.42 
TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.05         4.67        14.10        11.15        19.13        48.99 

  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
              0.07               0.03 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
            223.96             208.60 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
             12.23              13.02 
[1] "0.1 - 224.0 (12.2)" "0.0 - 208.6 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
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  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
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        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11Q GAIN MUTATED"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "11Q GAIN MUTATED" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"11Q GAIN WILD-TYPE"   "11Q GAIN MUTATED"   "11Q GAIN MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11Q GAIN WILD-TYPE" "11Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D22V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  11Q GAIN MUTATED         0       19       33         9        17         18
  11Q GAIN WILD-TYPE       3       94       98        35        48         47
                    vv
clus                 STAGE IIIB STAGE IV
  11Q GAIN MUTATED            4        7
  11Q GAIN WILD-TYPE          7       15
D22V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q GAIN MUTATED    28  63   9   5
  11Q GAIN WILD-TYPE 113 192  30  13
D22V4, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  T1               28                113
  T2               63                192
  T3                9                 30
  T4                5                 13
                    vv
clus                  N0  N1 N2+N3
  11Q GAIN MUTATED    66  18    20
  11Q GAIN WILD-TYPE 224  67    50
D22V5, multiclass
       clus
vv      11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  N0                  66                224
  N1                  18                 67
  N2+N3               20                 50
                    vv
clus                  M0  M1 M1A M1B  MX
  11Q GAIN MUTATED    66   6   0   1  33
  11Q GAIN WILD-TYPE 248  12   1   2  82
D22V6, multiclass
D22V7, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED    62  45
  11Q GAIN WILD-TYPE 182 166
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED     62   45
  11Q GAIN WILD-TYPE  182  166
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  FEMALE               62                182
  MALE                 45                166
D22V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11Q GAIN MUTATED                            1
  11Q GAIN WILD-TYPE                         12
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11Q GAIN MUTATED                                  17
  11Q GAIN WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q GAIN MUTATED                                                   78
  11Q GAIN WILD-TYPE                                                214
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11Q GAIN MUTATED                                            1
  11Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11Q GAIN MUTATED                                               4
  11Q GAIN WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11Q GAIN MUTATED                                1
  11Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11Q GAIN MUTATED                                    2
  11Q GAIN WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11Q GAIN MUTATED                              0                             3
  11Q GAIN WILD-TYPE                            2                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  11Q GAIN MUTATED                                 0
  11Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11Q GAIN MUTATED                                               0
  11Q GAIN WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11Q GAIN MUTATED                              0
  11Q GAIN WILD-TYPE                            7
D22V9, multiclass
D22V10, binary
                    cls
clus                   0   1
  11Q GAIN MUTATED     6 101
  11Q GAIN WILD-TYPE  15 333
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q GAIN MUTATED      6  101
  11Q GAIN WILD-TYPE   15  333
     clus
vv    11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  NO                 6                 15
  YES              101                333
D22V11, continuous
D22V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q GAIN MUTATED    70   2   1   4
  11Q GAIN WILD-TYPE 242   8   3  14
D22V13, multiclass
    clus
vv   11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  R0               70                242
  R1                2                  8
  R2                1                  3
  RX                4                 14

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
D23V1, survival
                    sevent
clus2                  0   1
  12P GAIN MUTATED    80  33
  12P GAIN WILD-TYPE 221  85
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               113                306 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
                33                 85 
$`12P GAIN MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       45.01        37.02         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4432 TCGA-05-5420 TCGA-05-5428 TCGA-35-4122 TCGA-35-5375 
       29.95        25.02        15.02        22.03         7.36         8.68 
TCGA-38-4632 TCGA-44-2668 TCGA-44-3918 TCGA-44-5643 TCGA-44-5644 TCGA-44-7660 
       44.61         8.09        34.06        33.30        28.37        10.68 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8119 TCGA-44-A47A 
       18.31        18.87        29.00        23.64         3.22        15.32 
TCGA-49-6742 TCGA-50-5045 TCGA-50-5072 TCGA-50-5931 TCGA-50-5941 TCGA-50-5944 
       15.02        71.47         8.05         8.78        18.64        25.12 
TCGA-50-6592 TCGA-50-6673 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 
       25.51         0.72        38.73        48.62        45.17        32.61 
TCGA-55-6712 TCGA-55-6971 TCGA-55-6978 TCGA-55-6980 TCGA-55-6981 TCGA-55-6985 
        0.79         0.92         5.46         2.20        45.34        40.54 
TCGA-55-6987 TCGA-55-7576 TCGA-55-7726 TCGA-55-7728 TCGA-55-7907 TCGA-55-7910 
       38.47         1.32         1.02         0.79         0.53         6.48 
TCGA-55-7911 TCGA-55-7995 TCGA-55-8089 TCGA-55-8094 TCGA-55-8096 TCGA-55-8302 
        0.69         0.16         3.02         0.13         1.55         0.72 
TCGA-55-8505 TCGA-55-8615 TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF 
        0.95         0.49         1.58         0.92         0.16         1.55 
TCGA-62-8398 TCGA-62-8402 TCGA-62-A46O TCGA-62-A470 TCGA-62-A471 TCGA-64-1678 
       14.60        47.47        47.77        39.22        40.93        39.09 
TCGA-64-1681 TCGA-64-5775 TCGA-67-3774 TCGA-69-7973 TCGA-69-7980 TCGA-69-A59K 
       38.33         2.04        12.66         7.56        12.56         7.04 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 
       26.27         4.27         1.32        27.16         5.65        20.58 
TCGA-78-7154 TCGA-78-7159 TCGA-78-7167 TCGA-78-7220 TCGA-78-8655 TCGA-86-6562 
       19.50        40.11        88.11        26.53        77.59        12.36 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8278 TCGA-86-8280 TCGA-86-8585 TCGA-86-8669 
       13.87        19.43        15.65         0.53         1.12         1.08 
TCGA-86-A4D0 TCGA-91-6828 TCGA-91-6829 TCGA-91-6836 TCGA-91-6840 TCGA-91-6848 
        0.99        10.62        41.33        13.71        12.23         7.36 
TCGA-91-8499 TCGA-93-8067 TCGA-95-7567 TCGA-95-7944 TCGA-97-A4M7 TCGA-99-8032 
        1.18         6.08         5.36         0.69         8.91         1.45 
TCGA-99-8033 TCGA-L9-A443 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SY 
        5.56         3.81         9.37        20.42        86.14        49.35 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TI 
       58.85         5.49        10.09        29.42        14.10 

$`12P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       47.05        19.00        20.05        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       26.01        26.01        25.02        24.00        15.02         4.96 
TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 
       28.96         0.99         2.04         0.46         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       14.73        26.30         4.37        43.50        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 
       44.94        24.36        42.08        42.77         3.19        37.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       38.24         6.21        23.74        12.59        23.77        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90        21.63        23.18        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41        14.60        12.03         7.17 
TCGA-44-7671 TCGA-44-8117 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F 
       17.59        12.66         8.55        15.95         9.44        11.08 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        55.89        12.13        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       11.64        20.48        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
       49.28         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 
       15.12        29.00        22.55        42.31         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21        33.37         8.38        34.26        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 TCGA-55-6968 
       13.94         9.21        23.05         2.86         0.07        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 TCGA-55-6979 TCGA-55-6982 
       40.70        15.25        48.49         3.88         7.76        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       60.03        24.99        71.05         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7914 
        3.12         1.28         1.02         1.78         0.62         0.10 
TCGA-55-7994 TCGA-55-8085 TCGA-55-8087 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 
        1.02         1.08         0.69         0.20         1.41         0.85 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8506 
        0.49         1.51         2.17         7.07         1.41         0.36 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 
        7.46         0.30         0.10         4.80         6.97         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A492 TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 
        0.03         5.29         4.54        39.95        42.38        77.10 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A472 
       19.53        56.68        54.35        67.96        72.30        29.92 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5778 
       56.81        20.65        55.40        37.02        87.98        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       14.04         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68        13.61         5.42         6.05         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       29.95        15.35         5.39         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
      163.10        19.27        35.93        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       38.50        32.09         5.88        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
      223.96         8.48        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8660 
       28.96        10.55        32.68       208.60        39.72        10.55 
TCGA-78-8662 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7955 TCGA-86-8054 
      110.50        27.06         0.36        20.71        16.70        24.49 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
        0.33         0.43         0.79        15.75        10.92        15.85 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 
        0.62         0.85         1.45         0.56         0.49        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6830 TCGA-91-6831 
       13.28         0.33         0.43         1.28         1.97        10.16 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
        2.60        27.68         1.15        16.18         6.44         5.69 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        1.45         7.17         9.76         4.18         1.12         0.07 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        5.95         5.36         2.83         4.80         0.49         6.48 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       12.89        14.04        15.06         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N5 
        9.27         7.82         6.97         2.50         0.20        11.61 
TCGA-MP-A4SW TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       58.45        37.35        86.04         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
        2.43        11.05         4.67        11.15        19.13        48.99 

  12P GAIN MUTATED 12P GAIN WILD-TYPE 
              0.13               0.03 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             88.11             223.96 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
             12.36              13.02 
[1] "0.1 - 88.1 (12.4)"  "0.0 - 224.0 (13.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "12P GAIN MUTATED"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE"   "12P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED"   "12P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "12P GAIN MUTATED" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "12P GAIN MUTATED"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"12P GAIN WILD-TYPE"   "12P GAIN MUTATED" "12P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"12P GAIN WILD-TYPE" "12P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D23V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  12P GAIN MUTATED         1       29       30        18        12         22
  12P GAIN WILD-TYPE       2       84      101        26        53         43
                    vv
clus                 STAGE IIIB STAGE IV
  12P GAIN MUTATED            2        9
  12P GAIN WILD-TYPE          9       13
D23V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P GAIN MUTATED    37  72   9   4
  12P GAIN WILD-TYPE 104 183  30  14
D23V4, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  T1               37                104
  T2               72                183
  T3                9                 30
  T4                4                 14
                    vv
clus                  N0  N1 N2+N3
  12P GAIN MUTATED    75  23    22
  12P GAIN WILD-TYPE 215  62    48
D23V5, multiclass
       clus
vv      12P GAIN MUTATED 12P GAIN WILD-TYPE
  N0                  75                215
  N1                  23                 62
  N2+N3               22                 48
                    vv
clus                  M0  M1 M1A M1B  MX
  12P GAIN MUTATED    82   8   0   1  31
  12P GAIN WILD-TYPE 232  10   1   2  84
D23V6, multiclass
D23V7, binary
                    cls
clus                   0   1
  12P GAIN MUTATED    58  65
  12P GAIN WILD-TYPE 186 146
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED     58   65
  12P GAIN WILD-TYPE  186  146
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  FEMALE               58                186
  MALE                 65                146
D23V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12P GAIN MUTATED                            2
  12P GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12P GAIN MUTATED                                  22
  12P GAIN WILD-TYPE                                70
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P GAIN MUTATED                                                   88
  12P GAIN WILD-TYPE                                                204
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12P GAIN MUTATED                                            0
  12P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12P GAIN MUTATED                                               4
  12P GAIN WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12P GAIN MUTATED                                1
  12P GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12P GAIN MUTATED                                    0
  12P GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12P GAIN MUTATED                              0                             2
  12P GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  12P GAIN MUTATED                                 0
  12P GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12P GAIN MUTATED                                               1
  12P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12P GAIN MUTATED                              3
  12P GAIN WILD-TYPE                            4
D23V9, multiclass
D23V10, binary
                    cls
clus                   0   1
  12P GAIN MUTATED     5 118
  12P GAIN WILD-TYPE  16 316
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P GAIN MUTATED      5  118
  12P GAIN WILD-TYPE   16  316
     clus
vv    12P GAIN MUTATED 12P GAIN WILD-TYPE
  NO                 5                 16
  YES              118                316
D23V11, continuous
D23V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P GAIN MUTATED    89   1   2   6
  12P GAIN WILD-TYPE 223   9   2  12
D23V13, multiclass
    clus
vv   12P GAIN MUTATED 12P GAIN WILD-TYPE
  R0               89                223
  R1                1                  9
  R2                2                  2
  RX                6                 12

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
D24V1, survival
                    sevent
clus2                  0   1
  12Q GAIN MUTATED    77  29
  12Q GAIN WILD-TYPE 224  89
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               106                313 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
                29                 89 
$`12Q GAIN MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
       45.01        37.02         8.02         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4432 TCGA-05-5420 TCGA-05-5425 TCGA-35-4122 TCGA-35-5375 
       29.95        25.02        15.02        28.96         7.36         8.68 
TCGA-44-2656 TCGA-44-3918 TCGA-44-5644 TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 
       46.98        34.06        28.37        36.49        10.68        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A 
       18.87        29.00        23.64         3.22        15.95        15.32 
TCGA-44-A47B TCGA-49-6742 TCGA-50-5045 TCGA-50-5051 TCGA-50-5072 TCGA-50-5931 
        9.44        15.02        71.47        14.96         8.05         8.78 
TCGA-50-5941 TCGA-50-5944 TCGA-50-6592 TCGA-50-6673 TCGA-53-7813 TCGA-55-1594 
       18.64        25.12        25.51         0.72        13.94        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 TCGA-55-6971 TCGA-55-6978 
       48.62        45.17        32.61         0.79         0.92         5.46 
TCGA-55-6981 TCGA-55-6987 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7910 
       45.34        38.47         1.02         0.79         1.78         6.48 
TCGA-55-7911 TCGA-55-8089 TCGA-55-8302 TCGA-55-8505 TCGA-55-8615 TCGA-55-A490 
        0.69         3.02         0.72         0.95         0.49         1.58 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8398 TCGA-62-8402 TCGA-62-A46O 
        0.92         0.16         1.55        14.60        47.47        47.77 
TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-64-1678 TCGA-64-1681 TCGA-64-5779 
       72.30        39.22        40.93        39.09        38.33        28.41 
TCGA-67-3774 TCGA-69-7973 TCGA-69-7980 TCGA-69-8255 TCGA-69-A59K TCGA-73-4666 
       12.66         7.56        12.56         4.21         7.04        26.27 
TCGA-73-4670 TCGA-73-4675 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7167 
        4.27         1.32        27.16         5.65        20.58        88.11 
TCGA-78-7220 TCGA-78-8655 TCGA-86-6562 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
       26.53        77.59        12.36         0.36        13.87        19.43 
TCGA-86-8278 TCGA-86-8358 TCGA-86-8585 TCGA-86-8669 TCGA-86-A4D0 TCGA-91-6828 
       15.65         0.62         1.12         1.08         0.99        10.62 
TCGA-91-6836 TCGA-91-6840 TCGA-93-8067 TCGA-95-7567 TCGA-95-7944 TCGA-97-A4M7 
       13.71        12.23         6.08         5.36         0.69         8.91 
TCGA-99-8032 TCGA-99-8033 TCGA-L9-A443 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T6 
        1.45         5.56         3.81        86.14        49.35        58.85 
TCGA-MP-A4T7 TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TI 
        5.49        10.09        29.42        14.10 

$`12Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       47.05        19.00        20.05        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       26.01        26.01        25.02        24.00        15.02         4.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-38-4625 
       22.03         0.99         2.04         0.46         5.95        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 
       44.61        14.73        26.30         4.37        43.50        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 
       37.15        38.24         6.21        23.74        33.30        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       23.77        10.78         9.93        27.78        11.90        21.63 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       23.18        63.72        32.45        16.41        14.60        12.03 
TCGA-44-7662 TCGA-44-7671 TCGA-44-8117 TCGA-44-8120 TCGA-44-A47F TCGA-44-A47G 
        7.17        17.59        12.66         8.55        11.08         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
        5.16        55.89        12.13        29.26        17.13        11.64 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       20.48        70.55        25.81        31.04        49.28         9.27 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 
       35.87        77.88        21.47         8.45        15.12        29.00 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       22.55        42.31         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1592 
       33.37         8.38        34.26        30.54         9.21        23.05 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 
        2.86         0.07        42.48        40.70        15.25        48.49 
TCGA-55-6975 TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        3.88         7.76         2.20        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       40.54        71.05         0.59         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7903 TCGA-55-7907 TCGA-55-7914 
        1.32         1.28         1.02         0.62         0.53         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8090 TCGA-55-8091 
        1.02         0.16         1.08         0.69         0.20         1.41 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        0.85         0.13         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        7.07         1.41         0.36         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         6.97         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A4DG TCGA-62-8394 
        1.08         1.02         0.95         0.03         5.29         4.54 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       39.95        42.38        77.10        19.53        56.68        54.35 
TCGA-62-A46U TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
       67.96        29.92        56.81        20.65        55.40        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        42.90        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       20.02        18.84        14.04         5.69         4.60        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 
        6.64         6.12        22.68        13.61         5.42         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 
        2.30         2.93         3.25         2.50         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       23.38        29.95        15.35         5.39         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       17.06       163.10        19.27        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7535 
       22.29         7.04       104.15       223.96         8.48        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-7711 
      208.60        39.72        10.55       110.50        27.06        20.71 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
       16.70        24.49         0.33         0.43         0.79        15.75 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8668 TCGA-86-8671 
       10.92        15.85         0.53         0.85         1.45         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 
        0.49        14.93        13.28         0.33         0.43         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 
       41.33         1.97        10.16         2.60        27.68         7.36 
TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC 
        1.15        16.18         6.44         5.69         1.18         1.45 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 
        7.17         9.76         4.18         1.12         0.07         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.34         4.04        31.66        64.60        63.52        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       25.48         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 
        5.36         2.83         4.80         0.49         6.48        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
       14.04        15.06         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 
        7.82         6.97         2.50         0.20         9.37        20.42 
TCGA-MN-A4N5 TCGA-MP-A4SW TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T8 TCGA-MP-A4T9 
       11.61        58.45        37.35        86.04         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TJ TCGA-MP-A4TK 
       31.20         2.43        11.05         4.67        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
              0.16               0.03 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             88.11             223.96 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
             13.79              12.59 
[1] "0.2 - 88.1 (13.8)"  "0.0 - 224.0 (12.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED"   "12Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
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  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
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        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "12Q GAIN MUTATED"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"12Q GAIN WILD-TYPE"   "12Q GAIN MUTATED" "12Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"12Q GAIN WILD-TYPE" "12Q GAIN WILD-TYPE" 
[1] "hr=" "1"  
D24V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  12Q GAIN MUTATED         1       27       32        14        13         20
  12Q GAIN WILD-TYPE       2       86       99        30        52         45
                    vv
clus                 STAGE IIIB STAGE IV
  12Q GAIN MUTATED            3        8
  12Q GAIN WILD-TYPE          8       14
D24V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q GAIN MUTATED    34  71   8   4
  12Q GAIN WILD-TYPE 107 184  31  14
D24V4, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  T1               34                107
  T2               71                184
  T3                8                 31
  T4                4                 14
                    vv
clus                  N0  N1 N2+N3
  12Q GAIN MUTATED    75  20    21
  12Q GAIN WILD-TYPE 215  65    49
D24V5, multiclass
       clus
vv      12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  N0                  75                215
  N1                  20                 65
  N2+N3               21                 49
                    vv
clus                  M0  M1 M1A M1B  MX
  12Q GAIN MUTATED    80   8   0   0  29
  12Q GAIN WILD-TYPE 234  10   1   3  86
D24V6, multiclass
D24V7, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED    58  60
  12Q GAIN WILD-TYPE 186 151
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED     58   60
  12Q GAIN WILD-TYPE  186  151
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  FEMALE               58                186
  MALE                 60                151
D24V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12Q GAIN MUTATED                            3
  12Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12Q GAIN MUTATED                                  22
  12Q GAIN WILD-TYPE                                70
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q GAIN MUTATED                                                   83
  12Q GAIN WILD-TYPE                                                209
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12Q GAIN MUTATED                                            0
  12Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12Q GAIN MUTATED                                               2
  12Q GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12Q GAIN MUTATED                                1
  12Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12Q GAIN MUTATED                                    0
  12Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12Q GAIN MUTATED                              0                             2
  12Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  12Q GAIN MUTATED                                 0
  12Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12Q GAIN MUTATED                                               2
  12Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12Q GAIN MUTATED                              3
  12Q GAIN WILD-TYPE                            4
D24V9, multiclass
D24V10, binary
                    cls
clus                   0   1
  12Q GAIN MUTATED     5 113
  12Q GAIN WILD-TYPE  16 321
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q GAIN MUTATED      5  113
  12Q GAIN WILD-TYPE   16  321
     clus
vv    12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  NO                 5                 16
  YES              113                321
D24V11, continuous
D24V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q GAIN MUTATED    84   1   2   6
  12Q GAIN WILD-TYPE 228   9   2  12
D24V13, multiclass
    clus
vv   12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  R0               84                228
  R1                1                  9
  R2                2                  2
  RX                6                 12

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
D25V1, survival
                    sevent
clus2                  0   1
  13Q GAIN MUTATED    26  13
  13Q GAIN WILD-TYPE 275 105
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                39                380 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                13                105 
$`13Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-5428 TCGA-38-4631 TCGA-44-2655 TCGA-44-2659 
       50.07        19.92        22.03        11.64        43.50        44.94 
TCGA-44-7660 TCGA-44-7671 TCGA-49-6742 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       10.68        17.59        15.02         0.72        34.26        30.54 
TCGA-55-6968 TCGA-55-7281 TCGA-55-7726 TCGA-55-7907 TCGA-55-7910 TCGA-55-8089 
       42.48         0.59         1.02         0.53         6.48         3.02 
TCGA-55-8620 TCGA-55-A492 TCGA-62-8402 TCGA-64-1678 TCGA-64-1680 TCGA-67-3771 
        2.14         0.03        47.47        39.09        37.02        20.02 
TCGA-67-3772 TCGA-67-6215 TCGA-69-8253 TCGA-73-4677 TCGA-78-7143 TCGA-78-7149 
       18.84         5.69         3.25         1.25       163.10        35.93 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-86-6562 TCGA-86-8074 TCGA-86-8672 
       88.11        26.53        53.33        12.36         0.79         0.49 
TCGA-97-7547 TCGA-MP-A4SW TCGA-MP-A4T7 
       64.60        58.45         5.49 

$`13Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96        28.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       28.37        35.28        44.61        14.73        26.30         4.37 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       33.30        28.37        12.59        23.77        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41        14.60        12.03         7.17        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       18.87        29.00        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       15.95        15.32         9.44        11.08         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       55.89        12.13        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 
       33.37         8.38        13.94         9.21        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 
       40.54        71.05        38.47         1.12         0.13         3.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.32         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.69         0.10         1.02         0.16         1.08         0.69 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 
        0.20         1.41         0.85         0.13         1.55         0.49 
TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 
        1.51         2.17         7.07         1.41         0.72         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.36         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        0.49         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        0.95         1.58         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-A46O 
        4.54        39.95        42.38        14.60        77.10        47.77 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 
       40.93        29.92        56.81        20.65        55.40        38.33 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
        0.99        14.04        12.66         4.60        13.87         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         5.42         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        2.30         2.93        12.56         2.50         4.21         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 
        4.27         1.32         5.39        20.42        17.06        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        20.58        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7535 TCGA-78-7536 
        7.04       104.15       223.96         8.48        31.20         8.02 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       10.75        28.96        10.55        32.68       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       77.59        10.55       110.50        27.06         0.36        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
       13.87        19.43        16.70        24.49         0.33         0.43 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
       15.75        10.92        15.65        15.85         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8673 
        0.85         1.12         1.45         1.08         0.56        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       13.28         0.33         0.99         0.43         1.28        10.62 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
       41.33         1.97        10.16         2.60        13.71        12.23 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
       27.68         7.36         1.15        16.18         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        1.18         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        1.12         0.07         5.36         0.69         1.32         4.34 
TCGA-95-A4VK TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        4.04        31.66        63.52        43.76        25.48         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 
        4.80         0.49         6.48         8.91        12.89        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T2 
        9.37        20.42        11.61        86.14        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC 
       86.04        58.85         5.29        41.59        31.20         2.43 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
       10.09        29.42        11.05         4.67        14.10        11.15 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
              0.03               0.07 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            163.10             223.96 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
            18.840             12.575 
[1] "0.0 - 163.1 (18.8)" "0.1 - 224.0 (12.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
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        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "13Q GAIN MUTATED"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED"   "13Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"13Q GAIN WILD-TYPE"   "13Q GAIN MUTATED" "13Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"13Q GAIN WILD-TYPE" "13Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D25V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  13Q GAIN MUTATED         0        9       11         7         5          3
  13Q GAIN WILD-TYPE       3      104      120        37        60         62
                    vv
clus                 STAGE IIIB STAGE IV
  13Q GAIN MUTATED            1        5
  13Q GAIN WILD-TYPE         10       17
D25V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q GAIN MUTATED    14  25   1   1
  13Q GAIN WILD-TYPE 127 230  38  17
D25V4, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  T1               14                127
  T2               25                230
  T3                1                 38
  T4                1                 17
                    vv
clus                  N0  N1 N2+N3
  13Q GAIN MUTATED    27  10     4
  13Q GAIN WILD-TYPE 263  75    66
D25V5, multiclass
       clus
vv      13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  N0                  27                263
  N1                  10                 75
  N2+N3                4                 66
                    vv
clus                  M0  M1 M1A M1B  MX
  13Q GAIN MUTATED    29   5   0   1   6
  13Q GAIN WILD-TYPE 285  13   1   2 109
D25V6, multiclass
D25V7, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED    22  19
  13Q GAIN WILD-TYPE 222 192
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED     22   19
  13Q GAIN WILD-TYPE  222  192
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  FEMALE               22                222
  MALE                 19                192
D25V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  13Q GAIN MUTATED                            0
  13Q GAIN WILD-TYPE                         13
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  13Q GAIN MUTATED                                   9
  13Q GAIN WILD-TYPE                                83
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q GAIN MUTATED                                                   28
  13Q GAIN WILD-TYPE                                                264
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  13Q GAIN MUTATED                                            0
  13Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  13Q GAIN MUTATED                                               1
  13Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  13Q GAIN MUTATED                                0
  13Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  13Q GAIN MUTATED                                    0
  13Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  13Q GAIN MUTATED                              0                             2
  13Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  13Q GAIN MUTATED                                 0
  13Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  13Q GAIN MUTATED                                               0
  13Q GAIN WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  13Q GAIN MUTATED                              1
  13Q GAIN WILD-TYPE                            6
D25V9, multiclass
D25V10, binary
                    cls
clus                   0   1
  13Q GAIN MUTATED     2  39
  13Q GAIN WILD-TYPE  19 395
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q GAIN MUTATED      2   39
  13Q GAIN WILD-TYPE   19  395
     clus
vv    13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  NO                 2                 19
  YES               39                395
D25V11, continuous
D25V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q GAIN MUTATED    35   0   0   0
  13Q GAIN WILD-TYPE 277  10   4  18
D25V13, multiclass
    clus
vv   13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  R0               35                277
  R1                0                 10
  R2                0                  4
  RX                0                 18

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
D26V1, survival
                    sevent
clus2                  0   1
  14Q GAIN MUTATED    71  30
  14Q GAIN WILD-TYPE 230  88
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               101                318 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
                30                 88 
$`14Q GAIN MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-05-4402 TCGA-05-4415 TCGA-05-4417 TCGA-05-4424 
       45.01        37.02         8.02         2.96        14.93        30.02 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4629 TCGA-44-2659 TCGA-44-2668 
        5.95         8.68        37.71        28.37        44.94         8.09 
TCGA-44-6147 TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 
       27.78        36.49        16.41        10.68         7.17        18.31 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A4SU TCGA-49-4486 
        3.22        15.95        15.32         9.44         2.50        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4512 TCGA-50-5941 TCGA-50-5946 TCGA-50-6590 
       28.57        12.66         5.16        18.64        22.55        42.31 
TCGA-50-6591 TCGA-50-6594 TCGA-50-7109 TCGA-53-A4EZ TCGA-55-5899 TCGA-55-6543 
        3.88        12.16         8.38         9.21         2.86         0.07 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6983 TCGA-55-7815 TCGA-55-7907 
       15.25         0.92         3.88        60.03         1.78         0.53 
TCGA-55-7910 TCGA-55-7995 TCGA-55-8085 TCGA-55-8091 TCGA-55-8096 TCGA-55-8206 
        6.48         0.16         1.08         1.41         1.55         1.51 
TCGA-55-8302 TCGA-55-8506 TCGA-55-8510 TCGA-55-A490 TCGA-55-A4DG TCGA-62-8394 
        0.72         0.36         7.46         1.58         5.29         4.54 
TCGA-64-1677 TCGA-64-5774 TCGA-64-5775 TCGA-67-3770 TCGA-67-3771 TCGA-69-7763 
       20.65        87.98         2.04         0.99        20.02        22.68 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7979 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        7.56         6.05         2.93         2.01        52.57        23.38 
TCGA-73-4666 TCGA-73-4677 TCGA-73-7499 TCGA-78-7145 TCGA-78-7148 TCGA-78-7149 
       26.27         1.25        17.06        27.16        20.58        35.93 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-83-5908 TCGA-86-6562 TCGA-86-7955 
       40.11         7.04        88.11        27.06        12.36        16.70 
TCGA-86-8074 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 TCGA-86-8585 TCGA-91-6828 
        0.79        15.65         0.53         0.62         1.12        10.62 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-8496 TCGA-91-8497 
        2.60        13.71        12.23        27.68         6.44         5.69 
TCGA-91-8499 TCGA-93-8067 TCGA-97-7546 TCGA-97-8179 TCGA-J2-8192 TCGA-L9-A443 
        1.18         6.08        31.66         0.49         5.03         3.81 
TCGA-MP-A4SY TCGA-MP-A4T6 TCGA-MP-A4T9 TCGA-MP-A4TE TCGA-MP-A4TF 
       49.35        58.85        41.59        29.42        11.05 

$`14Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 
       47.05        19.00        20.05         8.98        29.95        12.00 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 TCGA-38-4626 TCGA-38-4628 
        2.04         0.46         7.36        97.74       120.79        49.02 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61        14.73        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       43.50        46.98        13.15        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        3.19        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       33.30        28.37        12.59        23.77        10.78         9.93 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 
       11.90        21.63        23.18        63.72        32.45        14.60 
TCGA-44-7661 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       12.03        18.87        29.00        17.59        23.64        12.66 
TCGA-44-8120 TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4487 TCGA-49-4494 
        8.55        11.08         4.44         3.75        28.11        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       46.72        14.07        32.84         8.81        29.46        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-6592 TCGA-50-6593 
        8.45        15.12        29.00        25.12        25.51        11.05 
TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 
        6.21        33.37         0.72        34.26        30.54        13.94 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73        48.62        45.17        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       42.48        40.70        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       45.34        32.71        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 
        1.02         1.02         0.79         0.62         0.69         0.10 
TCGA-55-7994 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 
        1.02         0.69         3.02         0.20         0.85         0.13 
TCGA-55-8097 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8511 
        0.49         2.17         7.07         1.41         0.95         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 
        2.14         3.45         1.08         1.02         0.95         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        0.92         0.16         1.55        39.95        42.38        14.60 
TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       77.10        47.47        47.77        19.53        56.68        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 
       67.96        72.30        39.22        40.93        29.92        56.81 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5779 
       39.09        55.40        37.02        38.33        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25        28.44        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        4.60        13.87         6.64         6.12        13.61         5.42 
TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        2.30        12.56         3.25         2.50         4.21         7.04 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 
       29.95        15.35         4.27         1.32         5.39        20.42 
TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
      163.10         5.65        19.27        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 
       19.50        38.50        32.09         5.88        22.29       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       10.75        28.96        10.55        32.68       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       77.59        10.55       110.50         0.36        20.71        13.87 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 
       19.43        24.49         0.33         0.43        15.75        10.92 
TCGA-86-8279 TCGA-86-8359 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
       15.85         0.85         1.45         1.08         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
       41.33         1.97        10.16         7.36         1.15        16.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 
        1.45         7.17         9.76         4.18         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 
        5.36         0.69         1.32         4.34         4.04        64.60 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       63.52        43.76        25.48         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-A4M2 
        3.48         5.95         5.36         2.83         4.80         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        8.91        12.89        14.04        15.06         1.45         5.56 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW 
        0.20         9.37        20.42        11.61        86.14        58.45 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TC 
       37.35        86.04         5.49         5.29        31.20         2.43 
TCGA-MP-A4TD TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       10.09         4.67        14.10        11.15        19.13        48.99 

  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
              0.07               0.03 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             88.11             223.96 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
             9.440             13.905 
[1] "0.1 - 88.1 (9.4)"   "0.0 - 224.0 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
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        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
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        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
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        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
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        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
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        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
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        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
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        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
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        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
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        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
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        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
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        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
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        TCGA-MP-A4TK         TCGA-MP-A5C7 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
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        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
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        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
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        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
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  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
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"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "14Q GAIN MUTATED"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "14Q GAIN MUTATED" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"14Q GAIN WILD-TYPE"   "14Q GAIN MUTATED"   "14Q GAIN MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"14Q GAIN WILD-TYPE" "14Q GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D26V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  14Q GAIN MUTATED         1       30       33        12        14         13
  14Q GAIN WILD-TYPE       2       83       98        32        51         52
                    vv
clus                 STAGE IIIB STAGE IV
  14Q GAIN MUTATED            3        5
  14Q GAIN WILD-TYPE          8       17
D26V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q GAIN MUTATED    35  62   9   5
  14Q GAIN WILD-TYPE 106 193  30  13
D26V4, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  T1               35                106
  T2               62                193
  T3                9                 30
  T4                5                 13
                    vv
clus                  N0  N1 N2+N3
  14Q GAIN MUTATED    77  16    14
  14Q GAIN WILD-TYPE 213  69    56
D26V5, multiclass
       clus
vv      14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  N0                  77                213
  N1                  16                 69
  N2+N3               14                 56
                    vv
clus                  M0  M1 M1A M1B  MX
  14Q GAIN MUTATED    63   5   0   0  43
  14Q GAIN WILD-TYPE 251  13   1   3  72
D26V6, multiclass
D26V7, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED    64  47
  14Q GAIN WILD-TYPE 180 164
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED     64   47
  14Q GAIN WILD-TYPE  180  164
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  FEMALE               64                180
  MALE                 47                164
D26V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  14Q GAIN MUTATED                            4
  14Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  14Q GAIN MUTATED                                  17
  14Q GAIN WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q GAIN MUTATED                                                   79
  14Q GAIN WILD-TYPE                                                213
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  14Q GAIN MUTATED                                            1
  14Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  14Q GAIN MUTATED                                               2
  14Q GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  14Q GAIN MUTATED                                0
  14Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  14Q GAIN MUTATED                                    1
  14Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  14Q GAIN MUTATED                              0                             4
  14Q GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  14Q GAIN MUTATED                                 0
  14Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  14Q GAIN MUTATED                                               2
  14Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  14Q GAIN MUTATED                              1
  14Q GAIN WILD-TYPE                            6
D26V9, multiclass
D26V10, binary
                    cls
clus                   0   1
  14Q GAIN MUTATED     2 109
  14Q GAIN WILD-TYPE  19 325
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q GAIN MUTATED      2  109
  14Q GAIN WILD-TYPE   19  325
     clus
vv    14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  NO                 2                 19
  YES              109                325
D26V11, continuous
D26V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q GAIN MUTATED    71   4   1   6
  14Q GAIN WILD-TYPE 241   6   3  12
D26V13, multiclass
    clus
vv   14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  R0               71                241
  R1                4                  6
  R2                1                  3
  RX                6                 12

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
D27V1, survival
                    sevent
clus2                  0   1
  15Q GAIN MUTATED    19  13
  15Q GAIN WILD-TYPE 282 105
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                32                387 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                13                105 
$`15Q GAIN MUTATED`
TCGA-05-4403 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-5420 TCGA-44-2661 
       19.00         2.96         8.98        29.95        15.02        24.36 
TCGA-44-5645 TCGA-49-4506 TCGA-49-6742 TCGA-50-5072 TCGA-50-5936 TCGA-50-5944 
       12.59        32.84        15.02         8.05         8.45        25.12 
TCGA-55-1594 TCGA-55-8207 TCGA-55-8505 TCGA-62-8398 TCGA-62-8402 TCGA-64-1678 
       38.73         2.17         0.95        14.60        47.47        39.09 
TCGA-69-7980 TCGA-71-6725 TCGA-73-4670 TCGA-78-7148 TCGA-78-7149 TCGA-78-7154 
       12.56         2.01         4.27        20.58        35.93        19.50 
TCGA-78-7220 TCGA-78-7540 TCGA-78-8662 TCGA-86-8055 TCGA-95-7944 TCGA-97-7553 
       26.53        28.96       110.50         0.33         0.69        43.76 
TCGA-97-8174 TCGA-MP-A4T7 
        5.36         5.49 

$`15Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 
        9.96        24.03        47.05         8.02        20.05        14.93 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 
       25.02        24.00        15.02         4.96        28.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        44.94        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       33.30        28.37        23.77        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90        21.63        23.18        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41        14.60        10.68        12.03         7.17        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        29.00        17.59        23.64        12.66         3.22 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G 
        8.55        15.95        15.32         9.44        11.08         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       55.89        12.13        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        9.27         8.78        35.87        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       18.64        29.00        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       11.05        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1595 
       34.26        30.54        13.94         9.21        23.05        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        1.02         0.16         1.08         0.69         3.02         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 
        1.41         0.85         0.13         1.55         0.49         1.51 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 
        7.07         1.41         0.72         0.36         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 
        0.03         0.92         0.16         1.55         5.29         4.54 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R 
       39.95        42.38        77.10        47.77        19.53        56.68 
TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 
       54.35        67.96        72.30        39.22        40.93        29.92 
TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       56.81        20.65        55.40        37.02        38.33        87.98 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
        2.04        42.90        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         6.64         6.12        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 
        7.56         6.05         2.30         2.93         3.25         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         7.04        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       15.35         1.32         5.39         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7150 TCGA-78-7152 
      163.10        27.16         5.65        19.27        21.86        39.48 
TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 
        7.04       104.15       223.96         8.48        88.11        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 
        8.02        53.33        10.75        10.55        32.68       208.60 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 
       39.72        77.59        10.55        27.06        12.36         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8073 
       20.71        13.87        19.43        16.70        24.49         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 
        0.79        15.75        10.92        15.65        15.85         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.49        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28        10.62        41.33         1.97        10.16         2.60 
TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
       13.71        12.23        27.68         7.36         1.15        16.18 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 
        6.44         5.69         1.18         1.45         7.17         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7947 
        4.18         6.08         1.12         0.07         5.36         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 
        4.34         4.04        31.66        64.60        63.52        25.48 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 
        5.95         0.59         0.72         3.48         5.95         2.83 
TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 
        4.80         0.49         6.48         8.91        12.89        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       15.06         1.45         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY 
        9.37        20.42        11.61        86.14        58.45        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       37.35        86.04        58.85         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI 
        2.43        10.09        29.42        11.05         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.15        19.13        48.99 

  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
              0.33               0.03 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
            110.50             223.96 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
             15.02              12.36 
[1] "0.3 - 110.5 (15.0)" "0.0 - 224.0 (12.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
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        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED"   "15Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"15Q GAIN WILD-TYPE"   "15Q GAIN MUTATED" "15Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"15Q GAIN WILD-TYPE" "15Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D27V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  15Q GAIN MUTATED         1        5        6         3         3         10
  15Q GAIN WILD-TYPE       2      108      125        41        62         55
                    vv
clus                 STAGE IIIB STAGE IV
  15Q GAIN MUTATED            2        2
  15Q GAIN WILD-TYPE          9       20
D27V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q GAIN MUTATED     7  21   2   2
  15Q GAIN WILD-TYPE 134 234  37  16
D27V4, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  T1                7                134
  T2               21                234
  T3                2                 37
  T4                2                 16
                    vv
clus                  N0  N1 N2+N3
  15Q GAIN MUTATED    16   4    11
  15Q GAIN WILD-TYPE 274  81    59
D27V5, multiclass
       clus
vv      15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  N0                  16                274
  N1                   4                 81
  N2+N3               11                 59
                    vv
clus                  M0  M1 M1A M1B  MX
  15Q GAIN MUTATED    26   2   0   0   3
  15Q GAIN WILD-TYPE 288  16   1   3 112
D27V6, multiclass
D27V7, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED    14  18
  15Q GAIN WILD-TYPE 230 193
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED     14   18
  15Q GAIN WILD-TYPE  230  193
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  FEMALE               14                230
  MALE                 18                193
D27V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  15Q GAIN MUTATED                            2
  15Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  15Q GAIN MUTATED                                   9
  15Q GAIN WILD-TYPE                                83
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q GAIN MUTATED                                                   15
  15Q GAIN WILD-TYPE                                                277
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  15Q GAIN MUTATED                                            1
  15Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  15Q GAIN MUTATED                                               1
  15Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  15Q GAIN MUTATED                                0
  15Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  15Q GAIN MUTATED                                    0
  15Q GAIN WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  15Q GAIN MUTATED                              0                             2
  15Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  15Q GAIN MUTATED                                 0
  15Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  15Q GAIN MUTATED                                               0
  15Q GAIN WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  15Q GAIN MUTATED                              2
  15Q GAIN WILD-TYPE                            5
D27V9, multiclass
D27V10, binary
                    cls
clus                   0   1
  15Q GAIN MUTATED     2  30
  15Q GAIN WILD-TYPE  19 404
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q GAIN MUTATED      2   30
  15Q GAIN WILD-TYPE   19  404
     clus
vv    15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  NO                 2                 19
  YES               30                404
D27V11, continuous
D27V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q GAIN MUTATED    24   1   0   1
  15Q GAIN WILD-TYPE 288   9   4  17
D27V13, multiclass
    clus
vv   15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  R0               24                288
  R1                1                  9
  R2                0                  4
  RX                1                 17

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
D28V1, survival
                    sevent
clus2                  0   1
  16P GAIN MUTATED    82  24
  16P GAIN WILD-TYPE 219  94
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               106                313 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
                24                 94 
$`16P GAIN MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-05-5423 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
       50.07        37.02         4.96        37.71        49.02        28.37 
TCGA-38-4631 TCGA-38-6178 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-3919 
       11.64        14.73        44.94        42.08        42.77         6.21 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6147 TCGA-44-6775 TCGA-44-6778 TCGA-44-6779 
       28.37        12.59        27.78        23.18        36.49        16.41 
TCGA-44-7662 TCGA-44-7669 TCGA-44-A47A TCGA-44-A47B TCGA-44-A4SU TCGA-49-4490 
        7.17        18.87        15.32         9.44         2.50        12.66 
TCGA-49-4505 TCGA-49-4507 TCGA-49-4512 TCGA-49-6744 TCGA-50-5933 TCGA-50-5935 
       14.07         8.81         5.16        29.26        77.88        21.47 
TCGA-50-6597 TCGA-50-6673 TCGA-55-1592 TCGA-55-6712 TCGA-55-6980 TCGA-55-7281 
       33.37         0.72        23.05         0.79         2.20         0.59 
TCGA-55-7573 TCGA-55-7726 TCGA-55-7907 TCGA-55-7910 TCGA-55-7995 TCGA-55-8091 
        0.13         1.02         0.53         6.48         0.16         1.41 
TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8512 TCGA-55-8615 
        0.85         1.55         0.49         1.51         0.10         0.49 
TCGA-55-8620 TCGA-55-A490 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8398 TCGA-62-A46S 
        2.14         1.58         0.92         5.29        14.60        54.35 
TCGA-64-1676 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-67-3772 TCGA-67-6215 
       56.81        55.40        37.02        38.33        18.84         5.69 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7764 TCGA-69-7978 TCGA-69-7980 TCGA-71-6725 
       13.87         6.64        13.61         2.30        12.56         2.01 
TCGA-73-4658 TCGA-73-4668 TCGA-73-4675 TCGA-78-7152 TCGA-78-7154 TCGA-78-7156 
       52.57        15.35         1.32        39.48        19.50        32.09 
TCGA-78-7163 TCGA-78-7542 TCGA-78-8640 TCGA-86-7701 TCGA-86-7713 TCGA-86-7955 
      223.96        10.55       208.60         0.36        13.87        16.70 
TCGA-86-8055 TCGA-86-8075 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 
        0.33        15.75        15.65        15.85         0.53         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-A456 TCGA-86-A4D0 TCGA-91-6840 TCGA-91-8496 
        1.12         1.45         0.33         0.99        12.23         6.44 
TCGA-91-8497 TCGA-93-7348 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 
        5.69         4.18         1.32         4.04        31.66        64.60 
TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M7 TCGA-99-8025 TCGA-99-8033 TCGA-J2-A4AD 
        4.80         0.49         8.91        14.04         5.56         9.44 
TCGA-J2-A4AG TCGA-MN-A4N4 TCGA-MP-A4SW TCGA-MP-A4T6 
        7.82        20.42        58.45        58.85 

$`16P GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        45.01         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4630 TCGA-38-4632 
        5.95         8.68        97.74       120.79        35.28        44.61 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 
       26.30         4.37        43.50        46.98        13.15        24.36 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 
        3.19         8.09        37.15        38.24        34.06        23.74 
TCGA-44-5643 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
       33.30        23.77        10.78         9.93        11.90        21.63 
TCGA-44-6776 TCGA-44-6777 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 
       63.72        32.45        14.60        10.68        12.03        18.31 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       29.00        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 
       15.95        11.08         4.44         3.75        76.21        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4510 TCGA-49-4514 
       28.57        35.54        46.72        32.84        29.46        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       15.02        12.13        17.13        11.64        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
        9.27         8.78        35.87         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       11.05        12.16         6.21         8.38        34.26        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.94         9.21        38.73        48.62        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07        32.61        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 
       48.49         3.88         5.46         7.76        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 TCGA-55-8087 
        0.62         0.69         0.10         1.02         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8094 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 
        3.02         0.20         0.13         2.17         7.07         1.41 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 
        0.72         0.95         0.36         7.46         0.30         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        6.97         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8395 
        0.95         0.03         0.16         1.55         4.54        39.95 
TCGA-62-8397 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R 
       42.38        77.10        47.47        47.77        19.53        56.68 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 
       67.96        72.30        39.22        40.93        29.92        20.65 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       39.09        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 
       28.44         0.99        20.02        14.04        12.66         4.60 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7979 
        6.12        22.68         5.42         7.56         6.05         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 TCGA-73-4662 
        3.25         2.50         4.21         7.04        23.38        29.95 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       26.27         4.27         5.39         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7153 TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       21.86        24.99        38.50         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-78-8648 
        8.02        53.33        10.75        28.96        32.68        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 
       77.59        10.55       110.50        27.06        12.36        20.71 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8358 
       19.43        24.49         0.43         0.79        10.92         0.62 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A4P7 
        1.08         0.56         0.49        14.93        13.28         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28        10.62        41.33         1.97        10.16         2.60 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8499 
       13.71        27.68         7.36         1.15        16.18         1.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        1.45         7.17         9.76         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        5.36         0.69         4.34        63.52        43.76        25.48 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
        5.95         0.59         0.72         3.48         5.95         5.36 
TCGA-97-8175 TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 
        2.83         6.48        12.89        15.06         1.45         5.03 
TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        3.72         9.27         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
        9.37        11.61        86.14        49.35        37.35        86.04 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD 
        5.49         5.29        41.59        31.20         2.43        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       29.42        11.05         4.67        14.10        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  16P GAIN MUTATED 16P GAIN WILD-TYPE 
              0.10               0.03 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            223.96             163.10 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
            11.935             13.280 
[1] "0.1 - 224.0 (11.9)" "0.0 - 163.1 (13.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "16P GAIN MUTATED"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
  "16P GAIN MUTATED"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED"   "16P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"16P GAIN WILD-TYPE"   "16P GAIN MUTATED" "16P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE"   "16P GAIN MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "16P GAIN MUTATED" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16P GAIN WILD-TYPE" "16P GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D28V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  16P GAIN MUTATED         1       31       31        14        14         15
  16P GAIN WILD-TYPE       2       82      100        30        51         50
                    vv
clus                 STAGE IIIB STAGE IV
  16P GAIN MUTATED            2        7
  16P GAIN WILD-TYPE          9       15
D28V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P GAIN MUTATED    39  61  11   3
  16P GAIN WILD-TYPE 102 194  28  15
D28V4, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  T1               39                102
  T2               61                194
  T3               11                 28
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  16P GAIN MUTATED    69  25    17
  16P GAIN WILD-TYPE 221  60    53
D28V5, multiclass
       clus
vv      16P GAIN MUTATED 16P GAIN WILD-TYPE
  N0                  69                221
  N1                  25                 60
  N2+N3               17                 53
                    vv
clus                  M0  M1 M1A M1B  MX
  16P GAIN MUTATED    76   5   0   2  29
  16P GAIN WILD-TYPE 238  13   1   1  86
D28V6, multiclass
D28V7, binary
                    cls
clus                   0   1
  16P GAIN MUTATED    61  54
  16P GAIN WILD-TYPE 183 157
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED     61   54
  16P GAIN WILD-TYPE  183  157
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  FEMALE               61                183
  MALE                 54                157
D28V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16P GAIN MUTATED                            3
  16P GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16P GAIN MUTATED                                  14
  16P GAIN WILD-TYPE                                78
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P GAIN MUTATED                                                   86
  16P GAIN WILD-TYPE                                                206
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16P GAIN MUTATED                                            1
  16P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16P GAIN MUTATED                                               4
  16P GAIN WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16P GAIN MUTATED                                0
  16P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16P GAIN MUTATED                                    1
  16P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16P GAIN MUTATED                              0                             5
  16P GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  16P GAIN MUTATED                                 0
  16P GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16P GAIN MUTATED                                               1
  16P GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16P GAIN MUTATED                              0
  16P GAIN WILD-TYPE                            7
D28V9, multiclass
D28V10, binary
                    cls
clus                   0   1
  16P GAIN MUTATED     4 111
  16P GAIN WILD-TYPE  17 323
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P GAIN MUTATED      4  111
  16P GAIN WILD-TYPE   17  323
     clus
vv    16P GAIN MUTATED 16P GAIN WILD-TYPE
  NO                 4                 17
  YES              111                323
D28V11, continuous
D28V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P GAIN MUTATED    82   2   1   6
  16P GAIN WILD-TYPE 230   8   3  12
D28V13, multiclass
    clus
vv   16P GAIN MUTATED 16P GAIN WILD-TYPE
  R0               82                230
  R1                2                  8
  R2                1                  3
  RX                6                 12

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
D29V1, survival
                    sevent
clus2                  0   1
  16Q GAIN MUTATED    60  19
  16Q GAIN WILD-TYPE 241  99
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                79                340 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                19                 99 
$`16Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-5423 TCGA-38-4627 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 
       50.07         4.96        37.71        28.37        11.64        14.73 
TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-6147 TCGA-44-6775 TCGA-44-6778 
       44.94        42.08        42.77        27.78        23.18        36.49 
TCGA-44-6779 TCGA-44-7662 TCGA-44-A47A TCGA-49-4505 TCGA-49-4507 TCGA-49-4512 
       16.41         7.17        15.32        14.07         8.81         5.16 
TCGA-49-6744 TCGA-50-5933 TCGA-50-5935 TCGA-50-6597 TCGA-50-6673 TCGA-55-1592 
       29.26        77.88        21.47        33.37         0.72        23.05 
TCGA-55-1594 TCGA-55-6712 TCGA-55-6980 TCGA-55-7726 TCGA-55-7910 TCGA-55-8089 
       38.73         0.79         2.20         1.02         6.48         3.02 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8097 TCGA-55-8206 TCGA-55-8512 TCGA-55-8615 
        1.41         0.85         0.49         1.51         0.10         0.49 
TCGA-55-A490 TCGA-55-A4DG TCGA-62-8398 TCGA-62-8402 TCGA-62-A46S TCGA-64-1676 
        1.58         5.29        14.60        47.47        54.35        56.81 
TCGA-64-1679 TCGA-64-1681 TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7764 
       55.40        38.33         5.69        13.87         6.64        13.61 
TCGA-69-7980 TCGA-71-6725 TCGA-73-4668 TCGA-73-4675 TCGA-78-7145 TCGA-78-7154 
       12.56         2.01        15.35         1.32        27.16        19.50 
TCGA-78-7163 TCGA-78-7542 TCGA-78-8640 TCGA-86-7701 TCGA-86-7955 TCGA-86-8055 
      223.96        10.55       208.60         0.36        16.70         0.33 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-A456 
       15.65        15.85         0.53         1.12         1.45         0.33 
TCGA-86-A4D0 TCGA-91-6840 TCGA-91-8497 TCGA-97-7547 TCGA-97-7553 TCGA-97-8177 
        0.99        12.23         5.69        64.60        43.76         4.80 
TCGA-97-8179 TCGA-97-A4M7 TCGA-99-8025 TCGA-99-8033 TCGA-J2-A4AD TCGA-MN-A4N4 
        0.49         8.91        14.04         5.56         9.44        20.42 
TCGA-MP-A4T6 
       58.85 

$`16Q GAIN WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
        3.98        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       15.02        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4628 
        7.36         5.95         8.68        97.74       120.79        49.02 
TCGA-38-4630 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       35.28        44.61        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       13.15        24.36         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
       34.06         6.21        23.74        33.30        28.37        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 
       23.77        10.78         9.93        11.90        21.63        63.72 
TCGA-44-6777 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-7669 
       32.45        14.60        10.68        12.03        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       29.00        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.95         9.44        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 
       32.84        29.46        55.89        15.02        12.13        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       11.64        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       42.31         3.88        25.51        11.05        12.16         6.21 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1595 
        8.38        34.26        30.54        13.94         9.21        48.62 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       45.17         2.86         0.07        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.69         0.10         1.02         0.16         1.08         0.69 
TCGA-55-8090 TCGA-55-8094 TCGA-55-8096 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 
        0.20         0.13         1.55         2.17         7.07         1.41 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8513 
        0.72         0.95         0.36         7.46         0.30         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF 
        1.02         0.95         0.03         0.92         0.16         1.55 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P 
        4.54        39.95        42.38        77.10        47.77        19.53 
TCGA-62-A46R TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 
       56.68        67.96        72.30        39.22        40.93        29.92 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       20.65        39.09        37.02        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       28.41        51.25        28.44         0.99        20.02        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
       14.04        12.66         4.60         6.12        22.68         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 
        7.56         6.05         2.30         2.93         3.25         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         7.04        52.57        23.38        29.95        26.27 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        4.27         5.39         1.25        20.42        17.06       163.10 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
        7.04       104.15         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-78-8648 
        8.02        53.33        10.75        28.96        32.68        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 
       77.59        10.55       110.50        27.06        12.36        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
       13.87        19.43        24.49         0.43         0.79        15.75 
TCGA-86-8076 TCGA-86-8358 TCGA-86-8359 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
       10.92         0.62         0.85         1.08         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
       14.93        13.28         0.43         1.28        10.62        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
        1.97        10.16         2.60        13.71        27.68         7.36 
TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
        1.15        16.18         6.44         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7552 
        0.69         1.32         4.34         4.04        31.66        63.52 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       25.48         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8175 TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        5.36         2.83         6.48        12.89        15.06         1.45 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        5.03         3.72         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW 
        3.81         0.20         9.37        11.61        86.14        58.45 
TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 
       49.35        37.35        86.04         5.49         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
       31.20         2.43        10.09        29.42        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        11.15        19.13        48.99 

  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
              0.10               0.03 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
            223.96             163.10 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
             13.61              12.66 
[1] "0.1 - 224.0 (13.6)" "0.0 - 163.1 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
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  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
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        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "16Q GAIN MUTATED"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED"   "16Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE"   "16Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "16Q GAIN MUTATED" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16Q GAIN WILD-TYPE" "16Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D29V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  16Q GAIN MUTATED         1       23       21        11        10         14
  16Q GAIN WILD-TYPE       2       90      110        33        55         51
                    vv
clus                 STAGE IIIB STAGE IV
  16Q GAIN MUTATED            2        4
  16Q GAIN WILD-TYPE          9       18
D29V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q GAIN MUTATED    29  44   9   3
  16Q GAIN WILD-TYPE 112 211  30  15
D29V4, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  T1               29                112
  T2               44                211
  T3                9                 30
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  16Q GAIN MUTATED    52  18    14
  16Q GAIN WILD-TYPE 238  67    56
D29V5, multiclass
       clus
vv      16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  N0                  52                238
  N1                  18                 67
  N2+N3               14                 56
                    vv
clus                  M0  M1 M1A M1B  MX
  16Q GAIN MUTATED    61   3   0   1  20
  16Q GAIN WILD-TYPE 253  15   1   2  95
D29V6, multiclass
D29V7, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED    44  42
  16Q GAIN WILD-TYPE 200 169
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED     44   42
  16Q GAIN WILD-TYPE  200  169
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  FEMALE               44                200
  MALE                 42                169
D29V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16Q GAIN MUTATED                            2
  16Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16Q GAIN MUTATED                                   8
  16Q GAIN WILD-TYPE                                84
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q GAIN MUTATED                                                   64
  16Q GAIN WILD-TYPE                                                228
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16Q GAIN MUTATED                                            1
  16Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16Q GAIN MUTATED                                               4
  16Q GAIN WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16Q GAIN MUTATED                                0
  16Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16Q GAIN MUTATED                                    1
  16Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16Q GAIN MUTATED                              0                             5
  16Q GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  16Q GAIN MUTATED                                 0
  16Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16Q GAIN MUTATED                                               1
  16Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16Q GAIN MUTATED                              0
  16Q GAIN WILD-TYPE                            7
D29V9, multiclass
D29V10, binary
                    cls
clus                   0   1
  16Q GAIN MUTATED     3  83
  16Q GAIN WILD-TYPE  18 351
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q GAIN MUTATED      3   83
  16Q GAIN WILD-TYPE   18  351
     clus
vv    16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  NO                 3                 18
  YES               83                351
D29V11, continuous
D29V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q GAIN MUTATED    62   3   1   5
  16Q GAIN WILD-TYPE 250   7   3  13
D29V13, multiclass
    clus
vv   16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  R0               62                250
  R1                3                  7
  R2                1                  3
  RX                5                 13

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
D30V1, survival
                    sevent
clus2                  0   1
  17P GAIN MUTATED    50  23
  17P GAIN WILD-TYPE 251  95
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                73                346 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                23                 95 
$`17P GAIN MUTATED`
TCGA-05-4382 TCGA-05-4398 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4432 
       19.92        47.05         2.96        14.93         8.98        25.02 
TCGA-35-5375 TCGA-38-4628 TCGA-44-2668 TCGA-44-3396 TCGA-44-6148 TCGA-44-6777 
        8.68        49.02         8.09        37.15        11.90        32.45 
TCGA-44-7667 TCGA-44-A479 TCGA-49-6742 TCGA-50-5930 TCGA-50-5935 TCGA-50-6592 
       18.31        15.95        15.02         9.27        21.47        25.51 
TCGA-50-6593 TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 TCGA-55-6971 TCGA-55-6979 
       11.05        48.62         2.86        32.61         0.92         7.76 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7995 TCGA-55-8094 TCGA-55-8207 TCGA-55-8302 
        1.78         0.53         0.16         0.13         2.17         0.72 
TCGA-55-8615 TCGA-55-8620 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8394 TCGA-62-8398 
        0.49         2.14         0.16         5.29         4.54        14.60 
TCGA-62-A471 TCGA-64-1677 TCGA-67-3772 TCGA-69-7973 TCGA-69-7980 TCGA-71-6725 
       40.93        20.65        18.84         7.56        12.56         2.01 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-78-7147 TCGA-78-7149 
       26.27        15.35         1.32         5.39        19.27        35.93 
TCGA-78-7154 TCGA-78-7167 TCGA-78-7220 TCGA-78-8662 TCGA-86-6562 TCGA-86-7713 
       19.50        88.11        26.53       110.50        12.36        13.87 
TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8585 TCGA-86-8669 TCGA-86-A4D0 
       16.70         0.33         0.79         1.12         1.08         0.99 
TCGA-91-6828 TCGA-91-6835 TCGA-91-6836 TCGA-95-7043 TCGA-97-8177 TCGA-97-8179 
       10.62         2.60        13.71         0.07         4.80         0.49 
TCGA-99-8032 TCGA-L9-A443 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY 
        1.45         3.81         9.37        11.61        86.14        49.35 
TCGA-MP-A4T9 
       41.59 

$`17P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
       50.07         3.98        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4420 TCGA-05-4422 
       24.03         8.02        19.00        20.05        29.95        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 
       30.02        21.99        26.01        26.01        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4626 
        2.04         0.46         7.36         5.95        97.74       120.79 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        28.37        35.28        11.64        44.61        14.73 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        43.50        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-3398 TCGA-44-3918 
       24.36        42.08        42.77         3.19        38.24        34.06 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21        23.74        33.30        28.37        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
       10.78         9.93        27.78        21.63        23.18        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        29.00        17.59        23.64        12.66         3.22 
TCGA-44-8120 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        8.55        15.32         9.44        11.08         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       55.89        12.13        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 
        8.05         8.78        35.87        77.88         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       12.16         6.21        33.37         0.72         8.38        34.26 
TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 
       30.54        13.94         9.21        23.05        38.73        45.17 
TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 
        0.07         0.79        42.48        40.70        15.25        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        3.88         5.46         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        0.79         0.62         6.48         0.69         0.10         1.02 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 
        1.08         0.69         3.02         0.20         1.41         0.85 
TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 
        1.55         0.49         1.51         7.07         1.41         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.36         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.58         1.61         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DF TCGA-62-8395 TCGA-62-8397 
        1.58         0.03         0.92         1.55        39.95        42.38 
TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       77.10        47.47        47.77        19.53        56.68        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 
       67.96        72.30        39.22        29.92        56.81        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        38.33        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 
       28.41        51.25        28.44         0.99        20.02        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       12.66         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68        13.61         5.42         6.05         2.30         2.93 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         7.04        52.57        23.38 
TCGA-73-4662 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
       29.95         4.27         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       27.16         5.65        20.58        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      104.15       223.96         8.48        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       10.75        28.96        10.55        32.68       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 
       77.59        10.55        27.06         0.36        20.71        19.43 
TCGA-86-8054 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
       24.49         0.43        15.75        10.92        15.65        15.85 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
        0.53         0.62         0.85         1.45         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6829 
       14.93        13.28         0.33         0.43         1.28        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        1.97        10.16        12.23        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
       16.18         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 
        9.76         4.18         6.08         1.12         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        5.95         5.36         2.83         6.48         8.91        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       14.04        15.06         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N4 
        9.27         7.82         6.97         2.50         0.20        20.42 
TCGA-MP-A4SW TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 
       58.45        37.35        86.04        58.85         5.49         5.29 
TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
       31.20         2.43        10.09        29.42        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        11.15        19.13        48.99 

  17P GAIN MUTATED 17P GAIN WILD-TYPE 
              0.07               0.03 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            110.50             223.96 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
            11.050             13.445 
[1] "0.1 - 110.5 (11.1)" "0.0 - 224.0 (13.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "17P GAIN MUTATED"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "17P GAIN MUTATED"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "17P GAIN MUTATED"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED"   "17P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE"   "17P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"17P GAIN WILD-TYPE"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "17P GAIN MUTATED"   "17P GAIN MUTATED" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "17P GAIN MUTATED" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"17P GAIN WILD-TYPE" "17P GAIN WILD-TYPE" 
[1] "hr=" "1.4"
D30V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  17P GAIN MUTATED         1       15       22         8         9         12
  17P GAIN WILD-TYPE       2       98      109        36        56         53
                    vv
clus                 STAGE IIIB STAGE IV
  17P GAIN MUTATED            4        5
  17P GAIN WILD-TYPE          7       17
D30V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P GAIN MUTATED    19  47   5   4
  17P GAIN WILD-TYPE 122 208  34  14
D30V4, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  T1               19                122
  T2               47                208
  T3                5                 34
  T4                4                 14
                    vv
clus                  N0  N1 N2+N3
  17P GAIN MUTATED    43  17    15
  17P GAIN WILD-TYPE 247  68    55
D30V5, multiclass
       clus
vv      17P GAIN MUTATED 17P GAIN WILD-TYPE
  N0                  43                247
  N1                  17                 68
  N2+N3               15                 55
                    vv
clus                  M0  M1 M1A M1B  MX
  17P GAIN MUTATED    54   3   0   2  17
  17P GAIN WILD-TYPE 260  15   1   1  98
D30V6, multiclass
D30V7, binary
                    cls
clus                   0   1
  17P GAIN MUTATED    33  43
  17P GAIN WILD-TYPE 211 168
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED     33   43
  17P GAIN WILD-TYPE  211  168
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  FEMALE               33                211
  MALE                 43                168
D30V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17P GAIN MUTATED                            2
  17P GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17P GAIN MUTATED                                  15
  17P GAIN WILD-TYPE                                77
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P GAIN MUTATED                                                   51
  17P GAIN WILD-TYPE                                                241
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17P GAIN MUTATED                                            0
  17P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17P GAIN MUTATED                                               0
  17P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17P GAIN MUTATED                                1
  17P GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17P GAIN MUTATED                                    1
  17P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17P GAIN MUTATED                              1                             2
  17P GAIN WILD-TYPE                            1                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  17P GAIN MUTATED                                 0
  17P GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17P GAIN MUTATED                                               2
  17P GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17P GAIN MUTATED                              1
  17P GAIN WILD-TYPE                            6
D30V9, multiclass
D30V10, binary
                    cls
clus                   0   1
  17P GAIN MUTATED     6  70
  17P GAIN WILD-TYPE  15 364
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P GAIN MUTATED      6   70
  17P GAIN WILD-TYPE   15  364
     clus
vv    17P GAIN MUTATED 17P GAIN WILD-TYPE
  NO                 6                 15
  YES               70                364
D30V11, continuous
D30V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P GAIN MUTATED    56   0   0   6
  17P GAIN WILD-TYPE 256  10   4  12
D30V13, multiclass
    clus
vv   17P GAIN MUTATED 17P GAIN WILD-TYPE
  R0               56                256
  R1                0                 10
  R2                0                  4
  RX                6                 12

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
D31V1, survival
                    sevent
clus2                  0   1
  17Q GAIN MUTATED   116  47
  17Q GAIN WILD-TYPE 185  71
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               163                256 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
                47                 71 
$`17Q GAIN MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4398 TCGA-05-4402 
       50.07         3.98        19.92        45.01        47.05         8.02 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4425 TCGA-05-4427 
        2.96        14.93         8.98        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 TCGA-44-2668 
       25.02        25.02        49.02        28.37        44.61         8.09 
TCGA-44-3396 TCGA-44-3919 TCGA-44-6144 TCGA-44-6148 TCGA-44-6775 TCGA-44-6777 
       37.15         6.21        23.77        11.90        23.18        32.45 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 TCGA-44-8117 TCGA-44-8119 
       12.03         7.17        18.31        29.00        12.66         3.22 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47B TCGA-49-4490 TCGA-49-4501 TCGA-49-6742 
        8.55        15.95         9.44        12.66        46.72        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 
       12.13        29.26        17.13         9.27         8.78        77.88 
TCGA-50-5935 TCGA-50-5941 TCGA-50-5944 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       21.47        18.64        25.12         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6597 TCGA-53-7813 TCGA-55-1595 TCGA-55-5899 TCGA-55-6642 
       12.16        33.37        13.94        48.62         2.86        32.61 
TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-7281 
        0.92         5.46         7.76        45.34        32.71         0.59 
TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7994 
        1.02         1.78         0.62         0.53         0.69         1.02 
TCGA-55-7995 TCGA-55-8089 TCGA-55-8094 TCGA-55-8207 TCGA-55-8302 TCGA-55-8510 
        0.16         3.02         0.13         2.17         0.72         7.46 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8620 TCGA-55-A48Z TCGA-55-A490 
        6.97         0.49         1.58         2.14         0.95         1.58 
TCGA-55-A494 TCGA-55-A4DG TCGA-62-8394 TCGA-62-8398 TCGA-62-8402 TCGA-62-A46R 
        0.16         5.29         4.54        14.60        47.47        56.68 
TCGA-62-A470 TCGA-62-A471 TCGA-64-1677 TCGA-64-5774 TCGA-67-3770 TCGA-67-3772 
       39.22        40.93        20.65        87.98         0.99        18.84 
TCGA-67-6215 TCGA-69-7760 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 
        5.69         6.64         7.56         6.05         2.30        12.56 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
        2.01        52.57        29.95        26.27        15.35         1.32 
TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7149 
        5.39        17.06       163.10        27.16        19.27        35.93 
TCGA-78-7154 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7220 TCGA-78-7539 
       19.50        40.11         7.04        88.11        26.53        10.75 
TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8660 TCGA-78-8662 TCGA-86-6562 
       10.55        32.68       208.60        10.55       110.50        12.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 
       20.71        13.87        19.43        16.70         0.33         0.79 
TCGA-86-8075 TCGA-86-8279 TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
       15.75        15.85         0.62         1.12         1.45         1.08 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-91-6828 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 
        0.99         0.43        10.62         2.60        13.71         7.36 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        4.18         6.08         1.12         0.07         5.36         0.69 
TCGA-97-7553 TCGA-97-7554 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-99-8025 
       43.76        25.48         2.83         4.80         0.49        14.04 
TCGA-99-8032 TCGA-99-8033 TCGA-L9-A443 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 
        1.45         5.56         3.81         9.37        20.42        11.61 
TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T4 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TD 
       86.14        49.35        86.04         5.29        41.59        10.09 
TCGA-MP-A4TE 
       29.42 

$`17Q GAIN WILD-TYPE`
TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 TCGA-05-4405 
       14.01        37.02         9.96        24.03        19.00        20.05 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4426 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       29.95        12.00        26.01        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        3.19        38.24        34.06        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6774 TCGA-44-6776 
       12.59        10.78         9.93        27.78        21.63        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7669 TCGA-44-7671 
       36.49        16.41        14.60        10.68        18.87        17.59 
TCGA-44-7672 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       23.64        15.32        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
       76.21        28.11        28.57        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6761 TCGA-50-5044 
        8.81        29.46         5.16        55.89        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5946 
        8.05        35.87         8.45        15.12        29.00        22.55 
TCGA-50-6590 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       42.31         6.21         0.72         8.38        34.26        30.54 
TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6712 
        9.21        23.05        38.73        45.17         0.07         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 TCGA-55-6980 
       42.48        40.70        15.25        48.49         3.88         2.20 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       60.03        24.99        40.54        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7910 TCGA-55-7914 TCGA-55-8085 TCGA-55-8087 TCGA-55-8090 TCGA-55-8091 
        6.48         0.10         1.08         0.69         0.20         1.41 
TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 
        0.85         1.55         0.49         1.51         7.07         1.41 
TCGA-55-8505 TCGA-55-8506 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 
        0.95         0.36         0.30         0.10         4.80         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DF 
        3.45         1.08         1.02         0.03         0.92         1.55 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46S 
       39.95        42.38        77.10        47.77        19.53        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 
       67.96        72.30        29.92        56.81        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        38.33         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 
       28.44        20.02        14.04        12.66         4.60        13.87 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7979 TCGA-69-8253 
        6.12        22.68        13.61         5.42         2.93         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 TCGA-73-4670 TCGA-73-4677 
        2.50         4.21         7.04        23.38         4.27         1.25 
TCGA-73-7498 TCGA-78-7146 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       20.42         5.65        20.58        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09         5.88        22.29       104.15       223.96 
TCGA-78-7166 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-8648 
        8.48        31.20         8.02        53.33        28.96        39.72 
TCGA-78-8655 TCGA-83-5908 TCGA-86-7701 TCGA-86-8054 TCGA-86-8073 TCGA-86-8076 
       77.59        27.06         0.36        24.49         0.43        10.92 
TCGA-86-8278 TCGA-86-8280 TCGA-86-8359 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 
       15.65         0.53         0.85         0.56         0.49        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
       13.28         0.33         1.28        41.33         1.97        10.16 
TCGA-91-6840 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
       12.23        27.68         1.15        16.18         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-95-7947 TCGA-95-7948 
        1.18         1.45         7.17         9.76         1.32         4.34 
TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7937 TCGA-97-7938 
        4.04        31.66        64.60        63.52         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-A4M2 TCGA-97-A4M7 
        0.72         3.48         5.95         5.36         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
       12.89        15.06         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MP-A4SW TCGA-MP-A4T2 
        7.82         6.97         2.50         0.20        58.45        37.35 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TF TCGA-MP-A4TH 
       58.85         5.49        31.20         2.43        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        11.15        19.13        48.99 

  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
              0.07               0.03 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
            208.60             223.96 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
             12.03              13.94 
[1] "0.1 - 208.6 (12.0)" "0.0 - 224.0 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
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  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
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"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE"   "17Q GAIN MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "17Q GAIN MUTATED"   "17Q GAIN MUTATED" "17Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"17Q GAIN WILD-TYPE" "17Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D31V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  17Q GAIN MUTATED         1       34       52        19        21         27
  17Q GAIN WILD-TYPE       2       79       79        25        44         38
                    vv
clus                 STAGE IIIB STAGE IV
  17Q GAIN MUTATED            7       11
  17Q GAIN WILD-TYPE          4       11
D31V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q GAIN MUTATED    44 103  16   7
  17Q GAIN WILD-TYPE  97 152  23  11
D31V4, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  T1               44                 97
  T2              103                152
  T3               16                 23
  T4                7                 11
                    vv
clus                  N0  N1 N2+N3
  17Q GAIN MUTATED   104  33    31
  17Q GAIN WILD-TYPE 186  52    39
D31V5, multiclass
       clus
vv      17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  N0                 104                186
  N1                  33                 52
  N2+N3               31                 39
                    vv
clus                  M0  M1 M1A M1B  MX
  17Q GAIN MUTATED   122   9   0   2  39
  17Q GAIN WILD-TYPE 192   9   1   1  76
D31V6, multiclass
D31V7, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED    91  81
  17Q GAIN WILD-TYPE 153 130
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED     91   81
  17Q GAIN WILD-TYPE  153  130
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  FEMALE               91                153
  MALE                 81                130
D31V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17Q GAIN MUTATED                            5
  17Q GAIN WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17Q GAIN MUTATED                                  36
  17Q GAIN WILD-TYPE                                56
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q GAIN MUTATED                                                  116
  17Q GAIN WILD-TYPE                                                176
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17Q GAIN MUTATED                                            1
  17Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17Q GAIN MUTATED                                               3
  17Q GAIN WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17Q GAIN MUTATED                                2
  17Q GAIN WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17Q GAIN MUTATED                                    1
  17Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17Q GAIN MUTATED                              1                             3
  17Q GAIN WILD-TYPE                            1                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  17Q GAIN MUTATED                                 0
  17Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17Q GAIN MUTATED                                               3
  17Q GAIN WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17Q GAIN MUTATED                              1
  17Q GAIN WILD-TYPE                            6
D31V9, multiclass
D31V10, binary
                    cls
clus                   0   1
  17Q GAIN MUTATED     8 164
  17Q GAIN WILD-TYPE  13 270
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q GAIN MUTATED      8  164
  17Q GAIN WILD-TYPE   13  270
     clus
vv    17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  NO                 8                 13
  YES              164                270
D31V11, continuous
D31V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q GAIN MUTATED   113   4   2  13
  17Q GAIN WILD-TYPE 199   6   2   5
D31V13, multiclass
    clus
vv   17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  R0              113                199
  R1                4                  6
  R2                2                  2
  RX               13                  5

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
D32V1, survival
                    sevent
clus2                  0   1
  18P GAIN MUTATED    61  22
  18P GAIN WILD-TYPE 240  96
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                83                336 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                22                 96 
$`18P GAIN MUTATED`
TCGA-05-4415 TCGA-05-4420 TCGA-05-4424 TCGA-05-4430 TCGA-05-5428 TCGA-35-4122 
        2.96        29.95        30.02        25.02        22.03         7.36 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-6144 TCGA-44-6146 TCGA-44-7672 
       13.15        44.94        42.08        23.77         9.93        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A47A TCGA-49-4487 TCGA-49-6761 TCGA-50-5068 
       12.66         3.22        15.32        28.11        11.64        49.28 
TCGA-50-5931 TCGA-50-6591 TCGA-50-6593 TCGA-50-6673 TCGA-50-7109 TCGA-53-7813 
        8.78         3.88        11.05         0.72         8.38        13.94 
TCGA-55-1595 TCGA-55-6970 TCGA-55-6980 TCGA-55-7907 TCGA-55-7994 TCGA-55-8089 
       48.62        15.25         2.20         0.53         1.02         3.02 
TCGA-55-8096 TCGA-55-8511 TCGA-55-8615 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        1.55         0.30         0.49         0.16         1.55         5.29 
TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-64-1676 TCGA-64-1677 TCGA-64-5775 
       14.60        77.10        47.47        56.81        20.65         2.04 
TCGA-64-5779 TCGA-69-7764 TCGA-69-7973 TCGA-69-7980 TCGA-69-8253 TCGA-73-4662 
       28.41        13.61         7.56        12.56         3.25        29.95 
TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 TCGA-78-7147 TCGA-78-7148 
       15.35         1.32         5.39       163.10        19.27        20.58 
TCGA-78-7155 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 TCGA-78-8662 TCGA-86-7713 
       38.50         8.02        10.75        10.55       110.50        13.87 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8359 
       16.70        24.49         0.33         0.79        15.75         0.85 
TCGA-86-8585 TCGA-86-A4D0 TCGA-91-6829 TCGA-91-6831 TCGA-91-6840 TCGA-91-8499 
        1.12         0.99        41.33        10.16        12.23         1.18 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7554 TCGA-97-8175 TCGA-97-8179 
        0.69         1.32        31.66        25.48         2.83         0.49 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 TCGA-MP-A4TD TCGA-MP-A4TK 
        3.81         0.20        20.42        10.09        19.13 

$`18P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       14.93         8.98        12.00        21.99        26.01        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        0.99         2.04         0.46         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       24.36        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
       34.06         6.21        23.74        33.30        28.37        12.59 
TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
       10.78        27.78        11.90        21.63        23.18        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41        14.60        10.68        12.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-8120 
        7.17        18.31        18.87        29.00        17.59         8.55 
TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.95         9.44        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
       76.21        28.57        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       32.84         8.81        29.46         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       12.13        29.26        17.13        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       14.96        25.81        31.04         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 
       25.12        22.55        42.31        25.51        12.16         6.21 
TCGA-50-6597 TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 
       33.37        34.26        30.54         9.21        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       45.17         2.86         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       40.70         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        6.48         0.69         0.10         0.16         1.08         0.69 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8206 
        0.20         1.41         0.85         0.13         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        2.17         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8510 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        7.46         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-A46O 
        0.03         0.92         4.54        39.95        42.38        47.77 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       40.93        29.92        39.09        55.40        37.02        38.33 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       87.98        42.90        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 
       18.84        14.04        12.66         5.69         4.60        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 
        6.64         6.12        22.68         5.42         6.05         2.30 
TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 
        2.93         2.50         4.21         7.04         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       23.38        26.27         4.27         1.25        20.42        17.06 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       27.16         5.65        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       19.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 
       53.33        28.96        32.68       208.60        39.72        77.59 
TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 
       10.55        27.06        12.36         0.36        20.71        19.43 
TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        0.43        10.92        15.65        15.85         0.53         0.62 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 
        1.45         1.08         0.56         0.49        14.93        13.28 
TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 
        0.33         0.43         1.28        10.62         1.97         2.60 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
       13.71        27.68         7.36         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        5.69         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 
        1.12         0.07         5.36         4.34         4.04        64.60 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       63.52        43.76         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        5.95         5.36         4.80         6.48         8.91        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-MN-A4N1 
        9.44         9.27         7.82         6.97         2.50         9.37 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       11.61        86.14        58.45        49.35        37.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC 
       58.85         5.49         5.29        41.59        31.20         2.43 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A5C7 
       29.42        11.05         4.67        14.10        11.15        48.99 

  18P GAIN MUTATED 18P GAIN WILD-TYPE 
              0.16               0.03 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            163.10             223.96 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
            11.640             13.495 
[1] "0.2 - 163.1 (11.6)" "0.0 - 224.0 (13.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "18P GAIN MUTATED"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED"   "18P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "18P GAIN MUTATED"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"18P GAIN WILD-TYPE"   "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE"   "18P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" "18P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "18P GAIN MUTATED" "18P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D32V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  18P GAIN MUTATED         2       22       24         9        12         15
  18P GAIN WILD-TYPE       1       91      107        35        53         50
                    vv
clus                 STAGE IIIB STAGE IV
  18P GAIN MUTATED            2        1
  18P GAIN WILD-TYPE          9       21
D32V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P GAIN MUTATED    30  47   7   3
  18P GAIN WILD-TYPE 111 208  32  15
D32V4, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  T1               30                111
  T2               47                208
  T3                7                 32
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  18P GAIN MUTATED    57  15    14
  18P GAIN WILD-TYPE 233  70    56
D32V5, multiclass
       clus
vv      18P GAIN MUTATED 18P GAIN WILD-TYPE
  N0                  57                233
  N1                  15                 70
  N2+N3               14                 56
                    vv
clus                  M0  M1 M1A M1B  MX
  18P GAIN MUTATED    64   1   0   0  22
  18P GAIN WILD-TYPE 250  17   1   3  93
D32V6, multiclass
D32V7, binary
                    cls
clus                   0   1
  18P GAIN MUTATED    43  44
  18P GAIN WILD-TYPE 201 167
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED     43   44
  18P GAIN WILD-TYPE  201  167
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  FEMALE               43                201
  MALE                 44                167
D32V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18P GAIN MUTATED                            4
  18P GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18P GAIN MUTATED                                  15
  18P GAIN WILD-TYPE                                77
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P GAIN MUTATED                                                   55
  18P GAIN WILD-TYPE                                                237
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18P GAIN MUTATED                                            0
  18P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18P GAIN MUTATED                                               4
  18P GAIN WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18P GAIN MUTATED                                1
  18P GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18P GAIN MUTATED                                    1
  18P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18P GAIN MUTATED                              1                             3
  18P GAIN WILD-TYPE                            1                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  18P GAIN MUTATED                                 0
  18P GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18P GAIN MUTATED                                               2
  18P GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18P GAIN MUTATED                              1
  18P GAIN WILD-TYPE                            6
D32V9, multiclass
D32V10, binary
                    cls
clus                   0   1
  18P GAIN MUTATED     3  84
  18P GAIN WILD-TYPE  18 350
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P GAIN MUTATED      3   84
  18P GAIN WILD-TYPE   18  350
     clus
vv    18P GAIN MUTATED 18P GAIN WILD-TYPE
  NO                 3                 18
  YES               84                350
D32V11, continuous
D32V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P GAIN MUTATED    61   1   0   5
  18P GAIN WILD-TYPE 251   9   4  13
D32V13, multiclass
    clus
vv   18P GAIN MUTATED 18P GAIN WILD-TYPE
  R0               61                251
  R1                1                  9
  R2                0                  4
  RX                5                 13

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
D33V1, survival
                    sevent
clus2                  0   1
  18Q GAIN MUTATED    48  11
  18Q GAIN WILD-TYPE 253 107
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                59                360 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                11                107 
$`18Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4415 TCGA-05-4420 TCGA-35-4122 TCGA-44-2659 TCGA-44-6144 
       37.02         2.96        29.95         7.36        44.94        23.77 
TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-7672 TCGA-44-8119 TCGA-44-A47A 
       36.49        10.68        18.31        23.64         3.22        15.32 
TCGA-49-4510 TCGA-49-6761 TCGA-50-5931 TCGA-50-6591 TCGA-53-7813 TCGA-55-1595 
       29.46        11.64         8.78         3.88        13.94        48.62 
TCGA-55-6970 TCGA-55-7907 TCGA-55-8089 TCGA-55-8096 TCGA-55-8511 TCGA-55-8615 
       15.25         0.53         3.02         1.55         0.30         0.49 
TCGA-55-8620 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8398 TCGA-62-8399 
        2.14         0.16         1.55         5.29        14.60        77.10 
TCGA-62-8402 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-5779 TCGA-69-7764 
       47.47        56.81        20.65        39.09        28.41        13.61 
TCGA-69-7973 TCGA-69-7980 TCGA-69-8253 TCGA-71-6725 TCGA-73-4668 TCGA-73-4675 
        7.56        12.56         3.25         2.01        15.35         1.32 
TCGA-73-4676 TCGA-78-7148 TCGA-78-7167 TCGA-78-7542 TCGA-86-7713 TCGA-86-7955 
        5.39        20.58        88.11        10.55        13.87        16.70 
TCGA-86-8075 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-A4D0 TCGA-91-6831 
       15.75         0.62         0.85         1.12         0.99        10.16 
TCGA-91-8499 TCGA-97-7546 TCGA-97-7554 TCGA-97-8175 TCGA-MP-A4TD 
        1.18        31.66        25.48         2.83        10.09 

$`18Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       50.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 
       24.03        47.05         8.02        19.00        20.05        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
       28.96        22.03         0.99         2.04         0.46         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61        14.73        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       43.50        46.98        13.15        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
       23.74        33.30        28.37        12.59        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 
       16.41        14.60        12.03         7.17        18.87        29.00 
TCGA-44-7671 TCGA-44-8117 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F 
       17.59        12.66         8.55        15.95         9.44        11.08 
TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
        4.44         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1592 
        0.72         8.38        34.26        30.54         9.21        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       42.48        40.70         0.92        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        1.78         0.62         6.48         0.69         0.10         1.02 
TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 
        0.16         1.08         0.69         0.20         1.41         0.85 
TCGA-55-8094 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 
        0.13         0.49         1.51         2.17         7.07         1.41 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8512 TCGA-55-8513 
        0.72         0.95         0.36         7.46         0.10         4.80 
TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        6.97         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-62-8394 TCGA-62-8395 
        0.95         1.58         0.03         0.92         4.54        39.95 
TCGA-62-8397 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U 
       42.38        47.77        19.53        56.68        54.35        67.96 
TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1679 TCGA-64-1680 
       72.30        39.22        40.93        29.92        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 
       38.33        87.98         2.04        42.90        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 
        4.60        13.87         6.64         6.12        22.68         5.42 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        6.05         2.30         2.93         2.50         4.21         7.04 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4677 
       52.57        23.38        29.95        26.27         4.27         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 
       10.75        28.96        32.68       208.60        39.72        77.59 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 
       10.55       110.50        27.06        12.36         0.36        20.71 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 
       19.43        24.49         0.33         0.43         0.79        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
       15.65        15.85         0.53         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 
        0.49        14.93        13.28         0.33         0.43         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
       10.62        41.33         1.97         2.60        13.71        12.23 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
       27.68         7.36         1.15        16.18         6.44         5.69 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        1.45         7.17         9.76         4.18         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        0.07         5.36         0.69         1.32         4.34         4.04 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       64.60        63.52        43.76         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        3.48         5.95         5.36         4.80         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        8.91        12.89        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 
        2.50         3.81         0.20         9.37        20.42        11.61 
TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 
       86.14        58.45        49.35        37.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TE 
        5.49         5.29        41.59        31.20         2.43        29.42 
TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.05         4.67        14.10        11.15        19.13        48.99 

  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
              0.16               0.03 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
             88.11             223.96 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
            11.640             12.775 
[1] "0.2 - 88.1 (11.6)"  "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
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        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
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        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
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"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "18Q GAIN MUTATED"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED"   "18Q GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE"   "18Q GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "18Q GAIN MUTATED" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"18Q GAIN WILD-TYPE" "18Q GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D33V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  18Q GAIN MUTATED         1       12       19         6         7         12
  18Q GAIN WILD-TYPE       2      101      112        38        58         53
                    vv
clus                 STAGE IIIB STAGE IV
  18Q GAIN MUTATED            2        3
  18Q GAIN WILD-TYPE          9       19
D33V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q GAIN MUTATED    17  38   5   2
  18Q GAIN WILD-TYPE 124 217  34  16
D33V4, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  T1               17                124
  T2               38                217
  T3                5                 34
  T4                2                 16
                    vv
clus                  N0  N1 N2+N3
  18Q GAIN MUTATED    40  10    12
  18Q GAIN WILD-TYPE 250  75    58
D33V5, multiclass
       clus
vv      18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  N0                  40                250
  N1                  10                 75
  N2+N3               12                 58
                    vv
clus                  M0  M1 M1A M1B  MX
  18Q GAIN MUTATED    41   2   0   1  18
  18Q GAIN WILD-TYPE 273  16   1   2  97
D33V6, multiclass
D33V7, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED    30  32
  18Q GAIN WILD-TYPE 214 179
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED     30   32
  18Q GAIN WILD-TYPE  214  179
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  FEMALE               30                214
  MALE                 32                179
D33V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18Q GAIN MUTATED                            2
  18Q GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18Q GAIN MUTATED                                  10
  18Q GAIN WILD-TYPE                                82
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q GAIN MUTATED                                                   39
  18Q GAIN WILD-TYPE                                                253
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18Q GAIN MUTATED                                            0
  18Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18Q GAIN MUTATED                                               1
  18Q GAIN WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18Q GAIN MUTATED                                1
  18Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18Q GAIN MUTATED                                    1
  18Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18Q GAIN MUTATED                              0                             5
  18Q GAIN WILD-TYPE                            2                            13
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  18Q GAIN MUTATED                                 0
  18Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18Q GAIN MUTATED                                               2
  18Q GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18Q GAIN MUTATED                              1
  18Q GAIN WILD-TYPE                            6
D33V9, multiclass
D33V10, binary
                    cls
clus                   0   1
  18Q GAIN MUTATED     2  60
  18Q GAIN WILD-TYPE  19 374
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q GAIN MUTATED      2   60
  18Q GAIN WILD-TYPE   19  374
     clus
vv    18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  NO                 2                 19
  YES               60                374
D33V11, continuous
D33V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q GAIN MUTATED    38   0   0   6
  18Q GAIN WILD-TYPE 274  10   4  12
D33V13, multiclass
    clus
vv   18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  R0               38                274
  R1                0                 10
  R2                0                  4
  RX                6                 12

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
D34V1, survival
                    sevent
clus2                  0   1
  19P GAIN MUTATED    25   4
  19P GAIN WILD-TYPE 276 114
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                29                390 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                 4                114 
$`19P GAIN MUTATED`
TCGA-05-4390 TCGA-05-4424 TCGA-44-2662 TCGA-44-2665 TCGA-44-3918 TCGA-44-6147 
       37.02        30.02        42.08        42.77        34.06        27.78 
TCGA-44-A47A TCGA-44-A47F TCGA-50-5049 TCGA-50-6594 TCGA-53-7624 TCGA-55-7907 
       15.32        11.08        70.55        12.16        34.26         0.53 
TCGA-55-8615 TCGA-55-8620 TCGA-62-8399 TCGA-69-7973 TCGA-69-8253 TCGA-73-4675 
        0.49         2.14        77.10         7.56         3.25         1.32 
TCGA-78-7154 TCGA-86-8359 TCGA-86-8585 TCGA-95-7944 TCGA-97-7554 TCGA-97-7937 
       19.50         0.85         1.12         0.69        25.48         5.95 
TCGA-97-8172 TCGA-97-8175 TCGA-97-8179 TCGA-MN-A4N4 TCGA-MP-A4TJ 
        5.95         2.83         0.49        20.42        11.15 

$`19P GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       50.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        29.95        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       49.02        28.37        35.28        11.64        44.61        14.73 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        43.50        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       24.36         3.19         8.09        37.15        38.24         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       23.74        33.30        28.37        12.59        23.77        10.78 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        29.00        17.59        23.64        12.66 
TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS 
        3.22         8.55        15.95         9.44         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       55.89        15.02        12.13        29.26        17.13        11.64 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
        0.72         8.38        30.54        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.62         6.48         0.69 
TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 
        0.10         1.02         0.16         1.08         0.69         3.02 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 
        0.20         1.41         0.85         0.13         1.55         0.49 
TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 
        1.51         2.17         7.07         1.41         0.72         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.36         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.58         1.61         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        1.58         0.03         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8402 TCGA-62-A46O 
        4.54        39.95        42.38        14.60        47.47        47.77 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       40.93        29.92        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        38.33        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       12.66         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       22.68        13.61         5.42         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 
       12.56         2.50         4.21         7.04         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       23.38        29.95        26.27        15.35         4.27         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
      208.60        39.72        77.59        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       12.36         0.36        20.71        13.87        19.43        16.70 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       24.49         0.33         0.43         0.79        15.75        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 TCGA-86-8669 
       15.65        15.85         0.53         0.62         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 
        0.56         0.49        14.93        13.28         0.33         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.43         1.28        10.62        41.33         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        2.60        13.71        12.23        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
       16.18         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8177 
       43.76         0.59         0.72         3.48         5.36         4.80 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        6.48         8.91        12.89        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 
        6.97         2.50         3.81         0.20         9.37        11.61 
TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 
       86.14        58.45        49.35        37.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD 
        5.49         5.29        41.59        31.20         2.43        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
       29.42        11.05         4.67        14.10        19.13        48.99 

  19P GAIN MUTATED 19P GAIN WILD-TYPE 
              0.49               0.03 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
             77.10             223.96 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
            11.150             12.775 
[1] "0.5 - 77.1 (11.2)"  "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19P GAIN MUTATED"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"19P GAIN WILD-TYPE"   "19P GAIN MUTATED" "19P GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "19P GAIN MUTATED" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE"   "19P GAIN MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"19P GAIN WILD-TYPE" "19P GAIN WILD-TYPE" 
[1] "hr=" "1.9"
D34V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  19P GAIN MUTATED         0        7        8         1         4          7
  19P GAIN WILD-TYPE       3      106      123        43        61         58
                    vv
clus                 STAGE IIIB STAGE IV
  19P GAIN MUTATED            0        2
  19P GAIN WILD-TYPE         11       20
D34V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P GAIN MUTATED     8  15   6   0
  19P GAIN WILD-TYPE 133 240  33  18
D34V4, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  T1                8                133
  T2               15                240
  T3                6                 33
  T4                0                 18
                    vv
clus                  N0  N1 N2+N3
  19P GAIN MUTATED    16   6     6
  19P GAIN WILD-TYPE 274  79    64
D34V5, multiclass
       clus
vv      19P GAIN MUTATED 19P GAIN WILD-TYPE
  N0                  16                274
  N1                   6                 79
  N2+N3                6                 64
                    vv
clus                  M0  M1 M1A M1B  MX
  19P GAIN MUTATED    22   1   0   1   5
  19P GAIN WILD-TYPE 292  17   1   2 110
D34V6, multiclass
D34V7, binary
                    cls
clus                   0   1
  19P GAIN MUTATED    13  16
  19P GAIN WILD-TYPE 231 195
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED     13   16
  19P GAIN WILD-TYPE  231  195
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  FEMALE               13                231
  MALE                 16                195
D34V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19P GAIN MUTATED                            2
  19P GAIN WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19P GAIN MUTATED                                   4
  19P GAIN WILD-TYPE                                88
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P GAIN MUTATED                                                   17
  19P GAIN WILD-TYPE                                                275
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19P GAIN MUTATED                                            0
  19P GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19P GAIN MUTATED                                               0
  19P GAIN WILD-TYPE                                            17
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19P GAIN MUTATED                                0
  19P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19P GAIN MUTATED                                    1
  19P GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19P GAIN MUTATED                              0                             2
  19P GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  19P GAIN MUTATED                                 1
  19P GAIN WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19P GAIN MUTATED                                               2
  19P GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19P GAIN MUTATED                              0
  19P GAIN WILD-TYPE                            7
D34V9, multiclass
D34V10, binary
                    cls
clus                   0   1
  19P GAIN MUTATED     1  28
  19P GAIN WILD-TYPE  20 406
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P GAIN MUTATED      1   28
  19P GAIN WILD-TYPE   20  406
     clus
vv    19P GAIN MUTATED 19P GAIN WILD-TYPE
  NO                 1                 20
  YES               28                406
D34V11, continuous
D34V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P GAIN MUTATED    16   1   0   1
  19P GAIN WILD-TYPE 296   9   4  17
D34V13, multiclass
    clus
vv   19P GAIN MUTATED 19P GAIN WILD-TYPE
  R0               16                296
  R1                1                  9
  R2                0                  4
  RX                1                 17

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
D35V1, survival
                    sevent
clus2                  0   1
  19Q GAIN MUTATED    48  15
  19Q GAIN WILD-TYPE 253 103
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                63                356 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                15                103 
$`19Q GAIN MUTATED`
TCGA-05-4390 TCGA-05-4418 TCGA-05-4424 TCGA-35-4122 TCGA-35-5375 TCGA-38-4631 
       37.02         8.98        30.02         7.36         8.68        11.64 
TCGA-44-2662 TCGA-44-3918 TCGA-44-6144 TCGA-44-6147 TCGA-44-6776 TCGA-44-7660 
       42.08        34.06        23.77        27.78        63.72        10.68 
TCGA-44-7669 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A4SS TCGA-49-4510 
       18.87        15.32         9.44        11.08         3.75        29.46 
TCGA-49-6743 TCGA-50-5049 TCGA-50-5936 TCGA-50-6594 TCGA-53-7624 TCGA-53-A4EZ 
       12.13        70.55         8.45        12.16        34.26         9.21 
TCGA-55-6971 TCGA-55-7907 TCGA-55-8092 TCGA-55-8302 TCGA-55-8615 TCGA-55-8620 
        0.92         0.53         0.85         0.72         0.49         2.14 
TCGA-62-8399 TCGA-62-A46S TCGA-64-5778 TCGA-64-5781 TCGA-69-7763 TCGA-69-7764 
       77.10        54.35        42.90        51.25        22.68        13.61 
TCGA-69-7973 TCGA-69-7980 TCGA-69-8253 TCGA-73-4675 TCGA-78-7150 TCGA-78-7154 
        7.56        12.56         3.25         1.32        21.86        19.50 
TCGA-86-7713 TCGA-86-8055 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8673 
       13.87         0.33         0.62         0.85         1.12        14.93 
TCGA-91-6830 TCGA-95-7043 TCGA-95-7944 TCGA-97-7554 TCGA-97-7937 TCGA-97-8172 
        1.97         0.07         0.69        25.48         5.95         5.95 
TCGA-97-8174 TCGA-97-8179 TCGA-99-8025 TCGA-L9-A443 TCGA-MN-A4N4 TCGA-MP-A4T7 
        5.36         0.49        14.04         3.81        20.42         5.49 
TCGA-MP-A4TC TCGA-MP-A4TH TCGA-MP-A4TJ 
        2.43         4.67        11.15 

$`19Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 
       50.07         3.98        19.92        14.01        45.01         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       14.93        29.95        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
       28.96        22.03         0.99         2.04         0.46         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        44.94        24.36        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       37.15        38.24         6.21        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       12.59        10.78         9.93        11.90        21.63        23.18 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 
       32.45        36.49        16.41        14.60        12.03         7.17 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.31        29.00        17.59        23.64        12.66         3.22 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47G TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        8.55        15.95         4.44         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 
        8.81         5.16        55.89        15.02        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       11.64        20.48        71.47        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        0.72         8.38        30.54        13.94        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       42.48        40.70        15.25        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        1.78         0.62         6.48         0.69         0.10         1.02 
TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 
        0.16         1.08         0.69         3.02         0.20         1.41 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.13         1.55         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        1.41         0.95         0.36         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        4.80         6.97         1.58         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        1.55         5.29         4.54        39.95        42.38        14.60 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46U TCGA-62-A46V 
       47.47        47.77        19.53        56.68        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       39.22        40.93        29.92        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 
       55.40        37.02        38.33        87.98         2.04        28.41 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 
       28.44         0.99        20.02        18.84        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7765 
        5.69         4.60        13.87         6.64         6.12         5.42 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        6.05         2.30         2.93         2.50         4.21         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        4.27         5.39         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
       27.16         5.65        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       24.99        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 
       32.68       208.60        39.72        77.59        10.55       110.50 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 
       27.06        12.36         0.36        20.71        19.43        16.70 
TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
       24.49         0.43         0.79        15.75        10.92        15.65 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
       15.85         0.53         1.45         1.08         0.56         0.49 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       13.28         0.33         0.99         0.43         1.28        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 
       41.33        10.16         2.60        13.71        12.23        27.68 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 
        7.36         1.15        16.18         6.44         5.69         1.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        1.45         7.17         9.76         4.18         6.08         1.12 
TCGA-95-7567 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 
        5.36         1.32         4.34         4.04        31.66        64.60 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8175 
       63.52        43.76         0.59         0.72         3.48         2.83 
TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 
        4.80         6.48         8.91        12.89        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV 
        6.97         2.50         0.20         9.37        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T8 
       58.45        49.35        37.35        86.04        58.85         5.29 
TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TI 
       41.59        31.20        10.09        29.42        11.05        14.10 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
              0.07               0.03 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
             77.10             223.96 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
            10.680             13.905 
[1] "0.1 - 77.1 (10.7)"  "0.0 - 224.0 (13.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
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"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
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"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
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  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "19Q GAIN MUTATED"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED"   "19Q GAIN MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
  "19Q GAIN MUTATED" "19Q GAIN WILD-TYPE"   "19Q GAIN MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"19Q GAIN WILD-TYPE" "19Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D35V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  19Q GAIN MUTATED         1       16       19         7         6         13
  19Q GAIN WILD-TYPE       2       97      112        37        59         52
                    vv
clus                 STAGE IIIB STAGE IV
  19Q GAIN MUTATED            0        3
  19Q GAIN WILD-TYPE         11       19
D35V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q GAIN MUTATED    21  34   9   0
  19Q GAIN WILD-TYPE 120 221  30  18
D35V4, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  T1               21                120
  T2               34                221
  T3                9                 30
  T4                0                 18
                    vv
clus                  N0  N1 N2+N3
  19Q GAIN MUTATED    41  11    12
  19Q GAIN WILD-TYPE 249  74    58
D35V5, multiclass
       clus
vv      19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  N0                  41                249
  N1                  11                 74
  N2+N3               12                 58
                    vv
clus                  M0  M1 M1A M1B  MX
  19Q GAIN MUTATED    46   2   0   1  16
  19Q GAIN WILD-TYPE 268  16   1   2  99
D35V6, multiclass
D35V7, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED    25  40
  19Q GAIN WILD-TYPE 219 171
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED     25   40
  19Q GAIN WILD-TYPE  219  171
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  FEMALE               25                219
  MALE                 40                171
D35V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19Q GAIN MUTATED                            3
  19Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19Q GAIN MUTATED                                   9
  19Q GAIN WILD-TYPE                                83
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q GAIN MUTATED                                                   42
  19Q GAIN WILD-TYPE                                                250
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19Q GAIN MUTATED                                            0
  19Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19Q GAIN MUTATED                                               2
  19Q GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19Q GAIN MUTATED                                1
  19Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19Q GAIN MUTATED                                    1
  19Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19Q GAIN MUTATED                              0                             4
  19Q GAIN WILD-TYPE                            2                            14
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  19Q GAIN MUTATED                                 1
  19Q GAIN WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19Q GAIN MUTATED                                               1
  19Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19Q GAIN MUTATED                              1
  19Q GAIN WILD-TYPE                            6
D35V9, multiclass
D35V10, binary
                    cls
clus                   0   1
  19Q GAIN MUTATED     1  64
  19Q GAIN WILD-TYPE  20 370
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q GAIN MUTATED      1   64
  19Q GAIN WILD-TYPE   20  370
     clus
vv    19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  NO                 1                 20
  YES               64                370
D35V11, continuous
D35V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q GAIN MUTATED    39   1   0   3
  19Q GAIN WILD-TYPE 273   9   4  15
D35V13, multiclass
    clus
vv   19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  R0               39                273
  R1                1                  9
  R2                0                  4
  RX                3                 15

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
D36V1, survival
                    sevent
clus2                  0   1
  20P GAIN MUTATED    98  43
  20P GAIN WILD-TYPE 203  75
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               141                278 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
                43                 75 
$`20P GAIN MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4389 TCGA-05-4402 TCGA-05-4417 TCGA-05-4424 
       50.07         3.98        45.01         8.02        14.93        30.02 
TCGA-05-4430 TCGA-05-4432 TCGA-05-5420 TCGA-05-5425 TCGA-35-5375 TCGA-38-4625 
       25.02        25.02        15.02        28.96         8.68        97.74 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2657 TCGA-44-3918 
       37.71        28.37        11.64        14.73        13.15        34.06 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
       28.37        12.59        23.77        27.78        21.63        23.18 
TCGA-44-6778 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
       36.49        10.68         7.17        18.31        18.87        17.59 
TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F TCGA-44-A4SS 
       23.64         3.22        15.95         9.44        11.08         3.75 
TCGA-44-A4SU TCGA-49-4494 TCGA-49-4506 TCGA-49-4510 TCGA-50-5045 TCGA-50-5049 
        2.50        35.54        32.84        29.46        71.47        70.55 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5931 TCGA-50-5935 TCGA-50-5941 TCGA-50-5946 
       31.04        49.28         8.78        21.47        18.64        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
       42.31         3.88        25.51         6.21         0.72         8.38 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       13.94        23.05        45.17         2.86         0.07        32.61 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-7574 
       40.70        15.25        48.49         5.46         7.76         3.12 
TCGA-55-7726 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8096 TCGA-55-8097 
        1.02         0.16         1.08         0.69         1.55         0.49 
TCGA-55-8206 TCGA-55-8302 TCGA-55-8514 TCGA-55-8615 TCGA-55-A48Z TCGA-55-A493 
        1.51         0.72         6.97         0.49         0.95         0.92 
TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8399 TCGA-62-8402 
        0.16         1.55         5.29         4.54        77.10        47.47 
TCGA-64-1677 TCGA-64-5775 TCGA-67-3771 TCGA-67-3772 TCGA-69-7763 TCGA-69-7764 
       20.65         2.04        20.02        18.84        22.68        13.61 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-71-6725 TCGA-73-4658 
        2.30         2.93        12.56         3.25         2.01        52.57 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4677 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       29.95        15.35         1.25        24.99        19.50        38.50 
TCGA-78-7159 TCGA-78-7163 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7542 
       40.11       223.96        88.11        26.53         8.02        10.55 
TCGA-78-8640 TCGA-83-5908 TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
      208.60        27.06        13.87        24.49         0.33         0.43 
TCGA-86-8075 TCGA-86-8585 TCGA-86-8669 TCGA-91-6829 TCGA-91-6836 TCGA-91-6840 
       15.75         1.12         1.08        41.33        13.71        12.23 
TCGA-91-6847 TCGA-91-8499 TCGA-91-A4BC TCGA-93-8067 TCGA-95-7567 TCGA-97-7546 
       27.68         1.18         1.45         6.08         5.36        31.66 
TCGA-97-7553 TCGA-97-7937 TCGA-97-8174 TCGA-97-8175 TCGA-97-8179 TCGA-99-8025 
       43.76         5.95         5.36         2.83         0.49        14.04 
TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T6 TCGA-MP-A4T7 
        9.37        11.61        49.35        37.35        58.85         5.49 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TK 
       29.42        11.05        19.13 

$`20P GAIN WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       19.92        14.01        37.02         9.96        24.03        47.05 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 
       19.00        20.05         2.96         8.98        29.95        12.00 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       21.99        26.01        26.01        24.00        15.02         4.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4626 TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F 
      120.79        49.02        35.28        44.61        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       43.50        46.98        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        38.24         6.21        23.74 
TCGA-44-5643 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 TCGA-44-6777 
       33.30        10.78         9.93        11.90        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7670 TCGA-44-8117 TCGA-44-8120 
       16.41        14.60        12.03        29.00        12.66         8.55 
TCGA-44-A47A TCGA-44-A47G TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       15.32         4.44        76.21        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       46.72        14.07         8.81         5.16        55.89        15.02 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5051 
       12.13        29.26        17.13        11.64        20.48        14.96 
TCGA-50-5055 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
       25.81         8.05         9.27        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       15.12        29.00        25.12        11.05        12.16        33.37 
TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-1595 TCGA-55-6712 
       34.26        30.54         9.21        38.73        48.62         0.79 
TCGA-55-6968 TCGA-55-6971 TCGA-55-6975 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       42.48         0.92         3.88         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        1.12         0.13         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-7994 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 
        1.02         3.02         0.20         1.41         0.85         0.13 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        2.17         7.07         1.41         0.95         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.30         0.10         4.80         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-62-8395 
        3.45         1.08         1.02         1.58         0.03        39.95 
TCGA-62-8397 TCGA-62-8398 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       42.38        14.60        47.77        19.53        56.68        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 
       67.96        72.30        39.22        40.93        29.92        56.81 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 
       39.09        55.40        37.02        38.33        87.98        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 TCGA-67-3774 
       28.41        51.25        28.44         0.99        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7765 
        5.69         4.60        13.87         6.64         6.12         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 
        7.56         6.05         2.50         4.21         7.04        23.38 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 
       26.27         4.27         1.32         5.39        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
      163.10        27.16         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 
       21.86        39.48        32.09         5.88        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
      104.15         8.48        31.20        53.33        10.75        28.96 
TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-86-6562 
       32.68        39.72        77.59        10.55       110.50        12.36 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 TCGA-86-8074 TCGA-86-8076 
        0.36        20.71        19.43        16.70         0.79        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 
       15.65        15.85         0.53         0.62         0.85         1.45 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 
        0.56         0.49        14.93        13.28         0.33         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.43         1.28        10.62         1.97        10.16         2.60 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BD 
        7.36         1.15        16.18         6.44         5.69         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        9.76         4.18         1.12         0.07         0.69         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 TCGA-97-7938 
        4.34         4.04        64.60        63.52        25.48         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 
        0.72         3.48         5.95         4.80         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       12.89        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        9.44         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T4 TCGA-MP-A4T8 
        0.20        20.42        86.14        58.45        86.04         5.29 
TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TH TCGA-MP-A4TI 
       41.59        31.20         2.43        10.09         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A5C7 
       11.15        48.99 

  20P GAIN MUTATED 20P GAIN WILD-TYPE 
              0.07               0.03 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
            223.96             163.10 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
             14.73              11.95 
[1] "0.1 - 224.0 (14.7)" "0.0 - 163.1 (11.9)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "20P GAIN MUTATED"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE"   "20P GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "20P GAIN MUTATED"   "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"20P GAIN WILD-TYPE"   "20P GAIN MUTATED"   "20P GAIN MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" "20P GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "20P GAIN MUTATED" "20P GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D36V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  20P GAIN MUTATED         2       41       51        12        19         19
  20P GAIN WILD-TYPE       1       72       80        32        46         46
                    vv
clus                 STAGE IIIB STAGE IV
  20P GAIN MUTATED            3        4
  20P GAIN WILD-TYPE          8       18
D36V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P GAIN MUTATED    46  92  10   3
  20P GAIN WILD-TYPE  95 163  29  15
D36V4, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  T1               46                 95
  T2               92                163
  T3               10                 29
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  20P GAIN MUTATED   103  24    19
  20P GAIN WILD-TYPE 187  61    51
D36V5, multiclass
       clus
vv      20P GAIN MUTATED 20P GAIN WILD-TYPE
  N0                 103                187
  N1                  24                 61
  N2+N3               19                 51
                    vv
clus                  M0  M1 M1A M1B  MX
  20P GAIN MUTATED    98   4   0   0  46
  20P GAIN WILD-TYPE 216  14   1   3  69
D36V6, multiclass
D36V7, binary
                    cls
clus                   0   1
  20P GAIN MUTATED    80  71
  20P GAIN WILD-TYPE 164 140
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED     80   71
  20P GAIN WILD-TYPE  164  140
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  FEMALE               80                164
  MALE                 71                140
D36V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20P GAIN MUTATED                            4
  20P GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20P GAIN MUTATED                                  21
  20P GAIN WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P GAIN MUTATED                                                  109
  20P GAIN WILD-TYPE                                                183
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20P GAIN MUTATED                                            1
  20P GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20P GAIN MUTATED                                               4
  20P GAIN WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20P GAIN MUTATED                                0
  20P GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20P GAIN MUTATED                                    2
  20P GAIN WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20P GAIN MUTATED                              0                             7
  20P GAIN WILD-TYPE                            2                            11
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  20P GAIN MUTATED                                 0
  20P GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20P GAIN MUTATED                                               2
  20P GAIN WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20P GAIN MUTATED                              1
  20P GAIN WILD-TYPE                            6
D36V9, multiclass
D36V10, binary
                    cls
clus                   0   1
  20P GAIN MUTATED     7 144
  20P GAIN WILD-TYPE  14 290
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P GAIN MUTATED      7  144
  20P GAIN WILD-TYPE   14  290
     clus
vv    20P GAIN MUTATED 20P GAIN WILD-TYPE
  NO                 7                 14
  YES              144                290
D36V11, continuous
D36V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P GAIN MUTATED    91   4   2   5
  20P GAIN WILD-TYPE 221   6   2  13
D36V13, multiclass
    clus
vv   20P GAIN MUTATED 20P GAIN WILD-TYPE
  R0               91                221
  R1                4                  6
  R2                2                  2
  RX                5                 13

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
D37V1, survival
                    sevent
clus2                  0   1
  20Q GAIN MUTATED   113  48
  20Q GAIN WILD-TYPE 188  70
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               161                258 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
                48                 70 
$`20Q GAIN MUTATED`
TCGA-05-4250 TCGA-05-4389 TCGA-05-4397 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 
        3.98        45.01        24.03        14.93        29.95        30.02 
TCGA-05-4430 TCGA-05-4432 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-35-5375 
       25.02        25.02        15.02         4.96        28.96         8.68 
TCGA-38-4625 TCGA-38-4627 TCGA-38-4629 TCGA-38-4631 TCGA-38-6178 TCGA-44-2657 
       97.74        37.71        28.37        11.64        14.73        13.15 
TCGA-44-3918 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
       34.06        12.59        23.77        27.78        21.63        23.18 
TCGA-44-6778 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       36.49        10.68         7.17        18.31        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47F 
       17.59        23.64        12.66         3.22        15.95        11.08 
TCGA-44-A4SU TCGA-49-4487 TCGA-49-4494 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
        2.50        28.11        35.54        32.84        29.46         5.16 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5931 TCGA-50-5935 TCGA-50-5941 TCGA-50-5946 
       31.04        49.28         8.78        21.47        18.64        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
       42.31         3.88        25.51         6.21         0.72         8.38 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 
       13.94        23.05        38.73        45.17         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 
        0.79        40.70        15.25        48.49         5.46         7.76 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7910 TCGA-55-7995 TCGA-55-8085 TCGA-55-8092 
        1.02         0.53         6.48         0.16         1.08         0.85 
TCGA-55-8096 TCGA-55-8206 TCGA-55-8302 TCGA-55-8506 TCGA-55-8514 TCGA-55-8615 
        1.55         1.51         0.72         0.36         6.97         0.49 
TCGA-55-8620 TCGA-55-A48Z TCGA-55-A493 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 
        2.14         0.95         0.92         1.55         5.29         4.54 
TCGA-62-8399 TCGA-62-8402 TCGA-64-1677 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       77.10        47.47        20.65        38.33        87.98         2.04 
TCGA-64-5781 TCGA-67-3771 TCGA-67-3772 TCGA-69-7763 TCGA-69-7764 TCGA-69-7978 
       51.25        20.02        18.84        22.68        13.61         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93        12.56         3.25         4.21         2.01        52.57 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7153 TCGA-78-7154 
       26.27        15.35         4.27         1.25        24.99        19.50 
TCGA-78-7155 TCGA-78-7159 TCGA-78-7163 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
       38.50        40.11       223.96        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7542 TCGA-78-8640 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 
        8.02        10.55       208.60        10.55        27.06        12.36 
TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8279 
       13.87        24.49         0.33         0.43        15.75        15.85 
TCGA-86-8585 TCGA-86-8669 TCGA-91-6829 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
        1.12         1.08        41.33         2.60        13.71        12.23 
TCGA-91-6847 TCGA-91-7771 TCGA-91-8499 TCGA-91-A4BC TCGA-93-8067 TCGA-95-7039 
       27.68        16.18         1.18         1.45         6.08         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7947 TCGA-97-7546 TCGA-97-7553 TCGA-97-7937 
        0.07         5.36         1.32        31.66        43.76         5.95 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-99-8025 TCGA-L4-A4E5 TCGA-L9-A444 
        2.83         4.80         0.49        14.04         6.97         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T2 
        9.37        20.42        11.61        86.14        49.35        37.35 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TK 
       58.85         5.49        29.42        11.05        19.13 

$`20Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       50.07        19.92        14.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4422 
        8.02        19.00        20.05         2.96         8.98        12.00 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5428 
       21.99        26.01        26.01        24.00        15.02        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 
        0.99         2.04         0.46         7.36         5.95       120.79 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       49.02        35.28        44.61        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       46.98        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
        8.09        37.15        38.24         6.21        23.74        33.30 
TCGA-44-5644 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 TCGA-44-6777 
       28.37        10.78         9.93        11.90        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-8120 TCGA-44-A47A TCGA-44-A47B 
       16.41        14.60        12.03         8.55        15.32         9.44 
TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 
        4.44         3.75        76.21        28.57        12.66        46.72 
TCGA-49-4505 TCGA-49-4507 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       14.07         8.81        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       17.13        11.64        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5936 
       25.81         8.05         9.27        35.87        77.88         8.45 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       15.12        29.00        25.12        11.05        12.16        33.37 
TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-5899 TCGA-55-6968 
       34.26        30.54         9.21        48.62         2.86        42.48 
TCGA-55-6971 TCGA-55-6975 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        0.92         3.88         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8087 
        1.78         0.62         0.69         0.10         1.02         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8094 TCGA-55-8097 TCGA-55-8207 
        3.02         0.20         1.41         0.13         0.49         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        7.07         1.41         0.95         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        4.80         1.58         1.61         3.45         1.08         1.02 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A494 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        1.58         0.03         0.16        39.95        42.38        14.60 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.77        19.53        56.68        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 
       39.22        40.93        29.92        56.81        39.09        55.40 
TCGA-64-1680 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 
       37.02        42.90        28.41        28.44         0.99        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       12.66         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-8254 TCGA-69-A59K TCGA-73-4659 
        5.42         7.56         6.05         2.50         7.04        23.38 
TCGA-73-4662 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
       29.95         1.32         5.39        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       39.48        32.09         5.88        22.29         7.04       104.15 
TCGA-78-7166 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 TCGA-78-8648 
        8.48        53.33        10.75        28.96        32.68        39.72 
TCGA-78-8655 TCGA-78-8662 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 
       77.59       110.50         0.36        20.71        19.43        16.70 
TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
        0.79        10.92        15.65         0.53         0.62         0.85 
TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.45         0.56         0.49        14.93        13.28         0.33 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 
        0.99         0.43         1.28        10.62         1.97        10.16 
TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BD TCGA-93-7347 
        7.36         1.15         6.44         5.69         7.17         9.76 
TCGA-93-7348 TCGA-95-7944 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 
        4.18         0.69         4.34         4.04        64.60        63.52 
TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 
       25.48         0.59         0.72         3.48         5.95         5.36 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        6.48         8.91        12.89        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
        5.03         3.72         9.44         9.27         7.82         2.50 
TCGA-L9-A443 TCGA-MP-A4SW TCGA-MP-A4T4 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
        3.81        58.45        86.04         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A5C7 
        2.43        10.09         4.67        14.10        11.15        48.99 

  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
              0.07               0.03 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
            223.96             163.10 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
             14.04              11.77 
[1] "0.1 - 224.0 (14.0)" "0.0 - 163.1 (11.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
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        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "20Q GAIN MUTATED"   "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"20Q GAIN WILD-TYPE"   "20Q GAIN MUTATED"   "20Q GAIN MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" "20Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "20Q GAIN MUTATED" "20Q GAIN WILD-TYPE" 
[1] "hr=" "1.1"
D37V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  20Q GAIN MUTATED         3       43       52        18        26         23
  20Q GAIN WILD-TYPE       0       70       79        26        39         42
                    vv
clus                 STAGE IIIB STAGE IV
  20Q GAIN MUTATED            3        6
  20Q GAIN WILD-TYPE          8       16
D37V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q GAIN MUTATED    53 102  15   3
  20Q GAIN WILD-TYPE  88 153  24  15
D37V4, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  T1               53                 88
  T2              102                153
  T3               15                 24
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  20Q GAIN MUTATED   115  32    23
  20Q GAIN WILD-TYPE 175  53    47
D37V5, multiclass
       clus
vv      20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  N0                 115                175
  N1                  32                 53
  N2+N3               23                 47
                    vv
clus                  M0  M1 M1A M1B  MX
  20Q GAIN MUTATED   114   5   0   1  52
  20Q GAIN WILD-TYPE 200  13   1   2  63
D37V6, multiclass
D37V7, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED    90  84
  20Q GAIN WILD-TYPE 154 127
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED     90   84
  20Q GAIN WILD-TYPE  154  127
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  FEMALE               90                154
  MALE                 84                127
D37V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20Q GAIN MUTATED                            4
  20Q GAIN WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20Q GAIN MUTATED                                  28
  20Q GAIN WILD-TYPE                                64
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q GAIN MUTATED                                                  124
  20Q GAIN WILD-TYPE                                                168
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20Q GAIN MUTATED                                            1
  20Q GAIN WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20Q GAIN MUTATED                                               4
  20Q GAIN WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20Q GAIN MUTATED                                0
  20Q GAIN WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20Q GAIN MUTATED                                    2
  20Q GAIN WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20Q GAIN MUTATED                              0                             7
  20Q GAIN WILD-TYPE                            2                            11
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  20Q GAIN MUTATED                                 0
  20Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20Q GAIN MUTATED                                               3
  20Q GAIN WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20Q GAIN MUTATED                              1
  20Q GAIN WILD-TYPE                            6
D37V9, multiclass
D37V10, binary
                    cls
clus                   0   1
  20Q GAIN MUTATED     5 169
  20Q GAIN WILD-TYPE  16 265
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q GAIN MUTATED      5  169
  20Q GAIN WILD-TYPE   16  265
     clus
vv    20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  NO                 5                 16
  YES              169                265
D37V11, continuous
D37V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q GAIN MUTATED   111   4   2   5
  20Q GAIN WILD-TYPE 201   6   2  13
D37V13, multiclass
    clus
vv   20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  R0              111                201
  R1                4                  6
  R2                2                  2
  RX                5                 13

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
D38V1, survival
                    sevent
clus2                  0   1
  21Q GAIN MUTATED    50  29
  21Q GAIN WILD-TYPE 251  89
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                79                340 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                29                 89 
$`21Q GAIN MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-5423 TCGA-05-5428 TCGA-38-4628 
       20.05         2.96         8.98         4.96        22.03        49.02 
TCGA-38-4629 TCGA-38-6178 TCGA-44-2657 TCGA-44-2662 TCGA-44-6147 TCGA-44-6774 
       28.37        14.73        13.15        42.08        27.78        21.63 
TCGA-44-6775 TCGA-44-6777 TCGA-44-A47A TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       23.18        32.45        15.32        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 TCGA-50-5049 
       46.72        14.07         5.16        15.02        12.13        70.55 
TCGA-50-5931 TCGA-50-5941 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-53-7626 
        8.78        18.64        12.16        33.37         0.72        30.54 
TCGA-55-1595 TCGA-55-6642 TCGA-55-6980 TCGA-55-7727 TCGA-55-7914 TCGA-55-8206 
       48.62        32.61         2.20         1.02         0.10         1.51 
TCGA-55-8207 TCGA-55-8511 TCGA-55-8615 TCGA-55-A48Z TCGA-62-8394 TCGA-62-8398 
        2.17         0.30         0.49         0.95         4.54        14.60 
TCGA-62-8399 TCGA-62-A46R TCGA-64-1678 TCGA-64-1680 TCGA-67-3771 TCGA-67-6217 
       77.10        56.68        39.09        37.02        20.02        13.87 
TCGA-69-8253 TCGA-69-A59K TCGA-71-6725 TCGA-73-4677 TCGA-73-7499 TCGA-78-7147 
        3.25         7.04         2.01         1.25        17.06        19.27 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 TCGA-78-7539 TCGA-78-7542 TCGA-78-8662 
       38.50       223.96        31.20        10.75        10.55       110.50 
TCGA-86-6562 TCGA-86-8075 TCGA-86-8279 TCGA-86-8358 TCGA-91-8496 TCGA-91-8499 
       12.36        15.75        15.85         0.62         6.44         1.18 
TCGA-95-7944 TCGA-97-7546 TCGA-97-7553 TCGA-97-8177 TCGA-97-8179 TCGA-J2-A4AD 
        0.69        31.66        43.76         4.80         0.49         9.44 
TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4TA 
        0.20         9.37        11.61        58.85         5.49        31.20 
TCGA-MP-A4TC 
        2.43 

$`21Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4417 
        9.96        24.03        47.05         8.02        19.00        14.93 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       29.95        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
       25.02        25.02        24.00        15.02        15.02        28.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
       97.74       120.79        37.71        35.28        11.64        44.61 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 
       26.30         4.37        43.50        46.98        44.94        24.36 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        34.06 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21        23.74        33.30        28.37        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
       10.78         9.93        11.90        63.72        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       14.60        10.68        12.03         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       29.00        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.95         9.44        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 
       76.21        35.54        32.84         8.81        29.46        55.89 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       29.26        17.13        11.64        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81        31.04        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47         8.45        15.12        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 
       22.55        42.31         3.88        25.51        11.05         6.21 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 
        8.38        34.26        13.94         9.21        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 
       45.17         2.86         0.07         0.79        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       38.47         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.28         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        6.48         0.69         1.02         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 
        3.02         0.20         1.41         0.85         0.13         1.55 
TCGA-55-8097 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        0.49         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8510 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        7.46         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 
        2.14         3.45         1.08         1.02         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 TCGA-62-8397 
        0.92         0.16         1.55         5.29        39.95        42.38 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.47        47.77        19.53        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
       39.22        40.93        29.92        56.81        20.65        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       38.33        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        4.60         6.64         6.12        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 
        7.56         6.05         2.30         2.93        12.56         2.50 
TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        4.21        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 
        4.27         1.32         5.39        20.42       163.10        27.16 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       19.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      104.15         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 
       28.96        32.68       208.60        39.72        77.59        10.55 
TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       27.06         0.36        20.71        13.87        19.43        16.70 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 
       24.49         0.33         0.43         0.79        10.92        15.65 
TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.53         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.49        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28        10.62        41.33         1.97        10.16         2.60 
TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
       13.71        12.23        27.68         7.36         1.15        16.18 
TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        5.69         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        1.12         0.07         5.36         1.32         4.34         4.04 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       64.60        63.52        25.48         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-A4M2 TCGA-97-A4M7 
        3.48         5.95         5.36         2.83         6.48         8.91 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
       12.89        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        3.72         9.27         7.82         6.97         2.50         3.81 
TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       20.42        86.14        58.45        49.35        37.35        86.04 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
        5.29        41.59        10.09        29.42        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        11.15        19.13        48.99 

  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
              0.10               0.03 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            223.96             208.60 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
            14.070             12.395 
[1] "0.1 - 224.0 (14.1)" "0.0 - 208.6 (12.4)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
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        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "21Q GAIN MUTATED"   "21Q GAIN MUTATED" "21Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"21Q GAIN WILD-TYPE"   "21Q GAIN MUTATED"   "21Q GAIN MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"21Q GAIN WILD-TYPE" "21Q GAIN WILD-TYPE" 
[1] "hr=" "1.3"
D38V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  21Q GAIN MUTATED         0       19       26        10         8         15
  21Q GAIN WILD-TYPE       3       94      105        34        57         50
                    vv
clus                 STAGE IIIB STAGE IV
  21Q GAIN MUTATED            3        3
  21Q GAIN WILD-TYPE          8       19
D38V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q GAIN MUTATED    27  49   6   2
  21Q GAIN WILD-TYPE 114 206  33  16
D38V4, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  T1               27                114
  T2               49                206
  T3                6                 33
  T4                2                 16
                    vv
clus                  N0  N1 N2+N3
  21Q GAIN MUTATED    46  14    20
  21Q GAIN WILD-TYPE 244  71    50
D38V5, multiclass
       clus
vv      21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  N0                  46                244
  N1                  14                 71
  N2+N3               20                 50
                    vv
clus                  M0  M1 M1A M1B  MX
  21Q GAIN MUTATED    59   3   0   0  21
  21Q GAIN WILD-TYPE 255  15   1   3  94
D38V6, multiclass
D38V7, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED    52  32
  21Q GAIN WILD-TYPE 192 179
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED     52   32
  21Q GAIN WILD-TYPE  192  179
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  FEMALE               52                192
  MALE                 32                179
D38V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  21Q GAIN MUTATED                            3
  21Q GAIN WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  21Q GAIN MUTATED                                  15
  21Q GAIN WILD-TYPE                                77
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q GAIN MUTATED                                                   56
  21Q GAIN WILD-TYPE                                                236
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  21Q GAIN MUTATED                                            0
  21Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  21Q GAIN MUTATED                                               3
  21Q GAIN WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  21Q GAIN MUTATED                                2
  21Q GAIN WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  21Q GAIN MUTATED                                    1
  21Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  21Q GAIN MUTATED                              0                             2
  21Q GAIN WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  21Q GAIN MUTATED                                 0
  21Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  21Q GAIN MUTATED                                               1
  21Q GAIN WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  21Q GAIN MUTATED                              1
  21Q GAIN WILD-TYPE                            6
D38V9, multiclass
D38V10, binary
                    cls
clus                   0   1
  21Q GAIN MUTATED     4  80
  21Q GAIN WILD-TYPE  17 354
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q GAIN MUTATED      4   80
  21Q GAIN WILD-TYPE   17  354
     clus
vv    21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  NO                 4                 17
  YES               80                354
D38V11, continuous
D38V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q GAIN MUTATED    62   2   0   4
  21Q GAIN WILD-TYPE 250   8   4  14
D38V13, multiclass
    clus
vv   21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  R0               62                250
  R1                2                  8
  R2                0                  4
  RX                4                 14

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
D39V1, survival
                    sevent
clus2                  0   1
  22Q GAIN MUTATED    31  20
  22Q GAIN WILD-TYPE 270  98
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                51                368 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                20                 98 
$`22Q GAIN MUTATED`
TCGA-05-4420 TCGA-05-4434 TCGA-38-4625 TCGA-38-A44F TCGA-44-3398 TCGA-44-6777 
       29.95        15.02        97.74         4.37        38.24        32.45 
TCGA-44-6779 TCGA-44-7662 TCGA-44-7670 TCGA-44-A47A TCGA-44-A47F TCGA-49-4488 
       16.41         7.17        29.00        15.32        11.08        28.57 
TCGA-49-4490 TCGA-49-6742 TCGA-49-6743 TCGA-50-5931 TCGA-50-5944 TCGA-50-6594 
       12.66        15.02        12.13         8.78        25.12        12.16 
TCGA-55-1592 TCGA-55-1596 TCGA-55-6712 TCGA-55-6981 TCGA-55-6982 TCGA-55-7726 
       23.05        45.17         0.79        45.34        32.71         1.02 
TCGA-55-7907 TCGA-55-8091 TCGA-55-8096 TCGA-55-8506 TCGA-55-8514 TCGA-62-8397 
        0.53         1.41         1.55         0.36         6.97        42.38 
TCGA-62-8398 TCGA-62-8402 TCGA-62-A46O TCGA-67-3770 TCGA-67-3771 TCGA-73-4675 
       14.60        47.47        47.77         0.99        20.02         1.32 
TCGA-78-7150 TCGA-78-7154 TCGA-78-8662 TCGA-86-6562 TCGA-86-7713 TCGA-86-8055 
       21.86        19.50       110.50        12.36        13.87         0.33 
TCGA-86-8073 TCGA-86-8280 TCGA-91-6847 TCGA-95-7944 TCGA-97-8174 TCGA-99-8033 
        0.43         0.53        27.68         0.69         5.36         5.56 
TCGA-J2-A4AE TCGA-MP-A4SW TCGA-MP-A4T7 
        9.27        58.45         5.49 

$`22Q GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
        2.96        14.93         8.98        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        7.36         5.95         8.68       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61        14.73        26.30 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       43.50        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19         8.09        37.15        34.06         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       23.74        33.30        28.37        12.59        23.77        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90        21.63        23.18        63.72 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-7669 
       36.49        14.60        10.68        12.03        18.31        18.87 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
       17.59        23.64        12.66         3.22         8.55        15.95 
TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
        9.44         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
        5.16        55.89        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       15.12        18.64        29.00        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05         6.21        33.37         0.72         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-1595 
       34.26        30.54        13.94         9.21        38.73        48.62 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        2.86         0.07        32.61        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        0.79         1.78         0.62         6.48         0.69         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        1.02         0.16         1.08         0.69         3.02         0.20 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.85         0.13         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        1.41         0.72         0.95         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8399 
        0.16         1.55         5.29         4.54        39.95        77.10 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       40.93        29.92        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        38.33        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25        28.44        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        4.60        13.87         6.64         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        5.42         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 
        3.25         2.50         4.21         7.04         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
       23.38        29.95        26.27        15.35         4.27         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7155 
       19.27        20.58        35.93        39.48        24.99        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       32.09         5.88        40.11        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 
      223.96         8.48        88.11        26.53        31.20         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 
       53.33        10.75        28.96        10.55        32.68       208.60 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
       39.72        77.59        10.55        27.06         0.36        20.71 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       19.43        16.70        24.49         0.79        15.75        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       15.65        15.85         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.08         0.56         0.49        14.93        13.28         0.33 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.99         0.43         1.28        10.62        41.33         1.97 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 
       10.16         2.60        13.71        12.23         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
       16.18         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         2.83         4.80         0.49         6.48         8.91 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 
       12.89        14.04        15.06         1.45         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T2 
        9.37        20.42        11.61        86.14        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC 
       86.04        58.85         5.29        41.59        31.20         2.43 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
       10.09        29.42        11.05         4.67        14.10        11.15 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
              0.33               0.03 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            110.50             223.96 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
            13.870             12.625 
[1] "0.3 - 110.5 (13.9)" "0.0 - 224.0 (12.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
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        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "22Q GAIN MUTATED"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED"   "22Q GAIN MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"22Q GAIN WILD-TYPE"   "22Q GAIN MUTATED" "22Q GAIN WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"22Q GAIN WILD-TYPE" "22Q GAIN WILD-TYPE" 
[1] "hr=" "1.5"
D39V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  22Q GAIN MUTATED         0       10       18         9         9          9
  22Q GAIN WILD-TYPE       3      103      113        35        56         56
                    vv
clus                 STAGE IIIB STAGE IV
  22Q GAIN MUTATED            0        3
  22Q GAIN WILD-TYPE         11       19
D39V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q GAIN MUTATED    12  38   6   1
  22Q GAIN WILD-TYPE 129 217  33  17
D39V4, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  T1               12                129
  T2               38                217
  T3                6                 33
  T4                1                 17
                    vv
clus                  N0  N1 N2+N3
  22Q GAIN MUTATED    33  15     8
  22Q GAIN WILD-TYPE 257  70    62
D39V5, multiclass
       clus
vv      22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  N0                  33                257
  N1                  15                 70
  N2+N3                8                 62
                    vv
clus                  M0  M1 M1A M1B  MX
  22Q GAIN MUTATED    37   3   0   0  18
  22Q GAIN WILD-TYPE 277  15   1   3  97
D39V6, multiclass
D39V7, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED    36  22
  22Q GAIN WILD-TYPE 208 189
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED     36   22
  22Q GAIN WILD-TYPE  208  189
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  FEMALE               36                208
  MALE                 22                189
D39V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  22Q GAIN MUTATED                            1
  22Q GAIN WILD-TYPE                         12
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  22Q GAIN MUTATED                                   7
  22Q GAIN WILD-TYPE                                85
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q GAIN MUTATED                                                   44
  22Q GAIN WILD-TYPE                                                248
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  22Q GAIN MUTATED                                            0
  22Q GAIN WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  22Q GAIN MUTATED                                               2
  22Q GAIN WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  22Q GAIN MUTATED                                1
  22Q GAIN WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  22Q GAIN MUTATED                                    1
  22Q GAIN WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  22Q GAIN MUTATED                              0                             1
  22Q GAIN WILD-TYPE                            2                            17
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  22Q GAIN MUTATED                                 0
  22Q GAIN WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  22Q GAIN MUTATED                                               0
  22Q GAIN WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  22Q GAIN MUTATED                              1
  22Q GAIN WILD-TYPE                            6
D39V9, multiclass
D39V10, binary
                    cls
clus                   0   1
  22Q GAIN MUTATED     1  57
  22Q GAIN WILD-TYPE  20 377
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q GAIN MUTATED      1   57
  22Q GAIN WILD-TYPE   20  377
     clus
vv    22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  NO                 1                 20
  YES               57                377
D39V11, continuous
D39V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q GAIN MUTATED    42   0   1   2
  22Q GAIN WILD-TYPE 270  10   3  16
D39V13, multiclass
    clus
vv   22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  R0               42                270
  R1                0                 10
  R2                1                  3
  RX                2                 16

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
D40V1, survival
                   sevent
clus2                 0   1
  XQ GAIN MUTATED    44  14
  XQ GAIN WILD-TYPE 257 104
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               58               361 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               14               104 
$`XQ GAIN MUTATED`
TCGA-05-4397 TCGA-05-4426 TCGA-05-4434 TCGA-05-5423 TCGA-35-5375 TCGA-44-2655 
       24.03        26.01        15.02         4.96         8.68        43.50 
TCGA-44-2659 TCGA-44-5645 TCGA-44-6778 TCGA-44-8117 TCGA-44-A47A TCGA-44-A4SU 
       44.94        12.59        36.49        12.66        15.32         2.50 
TCGA-49-6761 TCGA-50-5933 TCGA-50-5941 TCGA-50-5946 TCGA-50-6591 TCGA-53-7626 
       11.64        77.88        18.64        22.55         3.88        30.54 
TCGA-55-5899 TCGA-55-6543 TCGA-55-6712 TCGA-55-6970 TCGA-55-6987 TCGA-55-7281 
        2.86         0.07         0.79        15.25        38.47         0.59 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7910 TCGA-55-7994 TCGA-55-7995 TCGA-55-8094 
        1.02         0.53         6.48         1.02         0.16         0.13 
TCGA-55-8096 TCGA-55-A494 TCGA-64-1676 TCGA-64-1680 TCGA-64-5775 TCGA-67-6215 
        1.55         0.16        56.81        37.02         2.04         5.69 
TCGA-69-7980 TCGA-71-6725 TCGA-73-4676 TCGA-73-4677 TCGA-78-7149 TCGA-78-7154 
       12.56         2.01         5.39         1.25        35.93        19.50 
TCGA-78-7155 TCGA-78-7163 TCGA-78-7535 TCGA-78-7539 TCGA-78-8640 TCGA-86-8055 
       38.50       223.96        31.20        10.75       208.60         0.33 
TCGA-86-8075 TCGA-86-8358 TCGA-86-A4P7 TCGA-91-8499 TCGA-95-7043 TCGA-97-7554 
       15.75         0.62         0.43         1.18         0.07        25.48 
TCGA-97-7937 TCGA-97-8179 TCGA-MP-A4T4 TCGA-MP-A4TI 
        5.95         0.49        86.04        14.10 

$`XQ GAIN WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5425 
       26.01        25.02        25.02        24.00        15.02        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2656 
       11.64        44.61        14.73        26.30         4.37        46.98 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        34.06         6.21        23.74        33.30 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       28.37        23.77        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 
       21.63        23.18        63.72        32.45        16.41        14.60 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       10.68        12.03         7.17        18.31        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47B 
       17.59        23.64         3.22         8.55        15.95         9.44 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       11.08         4.44         3.75        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
       12.66        35.54        46.72        14.07        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       17.13        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
       21.47         8.45        15.12        29.00        25.12        42.31 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 
        8.38        34.26        13.94         9.21        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 TCGA-55-6971 
       48.62        45.17        32.61        42.48        40.70         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-7283 
       32.71        60.03        24.99        40.54        71.05         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 TCGA-55-8085 TCGA-55-8087 
        1.78         0.62         0.69         0.10         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8097 TCGA-55-8206 
        3.02         0.20         1.41         0.85         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        2.17         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DF TCGA-55-A4DG 
        0.95         1.58         0.03         0.92         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 
        4.54        39.95        42.38        14.60        77.10        47.47 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.77        19.53        56.68        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        40.93        29.92        20.65        39.09        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       38.33        87.98        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6216 
        0.99        20.02        18.84        14.04        12.66         4.60 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         6.64         6.12        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 
        7.56         6.05         2.30         2.93         3.25         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        4.21         7.04        52.57        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
       15.35         4.27         1.32        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        19.27        20.58        21.86        39.48 
TCGA-78-7153 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       24.99        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      104.15         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 
       28.96        10.55        32.68        39.72        77.59        10.55 
TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
      110.50        27.06        12.36         0.36        20.71        13.87 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 
       19.43        16.70        24.49         0.43         0.79        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       15.65        15.85         0.53         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.08         0.56         0.49        14.93        13.28         0.33 
TCGA-86-A4D0 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.99         1.28        10.62        41.33         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        2.60        13.71        12.23        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 
       16.18         6.44         5.69         1.45         7.17         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        4.18         6.08         1.12         5.36         0.69         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.34         4.04        31.66        64.60        63.52        43.76 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8177 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        4.80         6.48         8.91        12.89        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        7.82         6.97         2.50         3.81         0.20         9.37 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
       20.42        11.61        86.14        58.45        49.35        37.35 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC 
       58.85         5.49         5.29        41.59        31.20         2.43 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TJ TCGA-MP-A4TK 
       10.09        29.42        11.05         4.67        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
             0.07              0.03 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           223.96            163.10 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
           11.195            13.280 
[1] "0.1 - 224.0 (11.2)" "0.0 - 163.1 (13.3)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "XQ GAIN MUTATED"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "XQ GAIN MUTATED" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE"   "XQ GAIN MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" "XQ GAIN WILD-TYPE" 
[1] "hr=" "1.2"
D40V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  XQ GAIN MUTATED         1       16       18         9         7          8
  XQ GAIN WILD-TYPE       2       97      113        35        58         57
                   vv
clus                STAGE IIIB STAGE IV
  XQ GAIN MUTATED            2        5
  XQ GAIN WILD-TYPE          9       17
D40V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ GAIN MUTATED    19  38   4   4
  XQ GAIN WILD-TYPE 122 217  35  14
D40V4, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  T1              19               122
  T2              38               217
  T3               4                35
  T4               4                14
                   vv
clus                 N0  N1 N2+N3
  XQ GAIN MUTATED    41  14    10
  XQ GAIN WILD-TYPE 249  71    60
D40V5, multiclass
       clus
vv      XQ GAIN MUTATED XQ GAIN WILD-TYPE
  N0                 41               249
  N1                 14                71
  N2+N3              10                60
                   vv
clus                 M0  M1 M1A M1B  MX
  XQ GAIN MUTATED    43   4   0   1  17
  XQ GAIN WILD-TYPE 271  14   1   2  98
D40V6, multiclass
D40V7, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED    31  35
  XQ GAIN WILD-TYPE 213 176
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED     31   35
  XQ GAIN WILD-TYPE  213  176
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  FEMALE              31               213
  MALE                35               176
D40V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  XQ GAIN MUTATED                            1
  XQ GAIN WILD-TYPE                         12
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  XQ GAIN MUTATED                                   9
  XQ GAIN WILD-TYPE                                83
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ GAIN MUTATED                                                   51
  XQ GAIN WILD-TYPE                                                241
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  XQ GAIN MUTATED                                            1
  XQ GAIN WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  XQ GAIN MUTATED                                               0
  XQ GAIN WILD-TYPE                                            17
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  XQ GAIN MUTATED                                0
  XQ GAIN WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  XQ GAIN MUTATED                                    1
  XQ GAIN WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  XQ GAIN MUTATED                              0                             3
  XQ GAIN WILD-TYPE                            2                            15
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  XQ GAIN MUTATED                                 0
  XQ GAIN WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  XQ GAIN MUTATED                                               0
  XQ GAIN WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  XQ GAIN MUTATED                              0
  XQ GAIN WILD-TYPE                            7
D40V9, multiclass
D40V10, binary
                   cls
clus                  0   1
  XQ GAIN MUTATED     3  63
  XQ GAIN WILD-TYPE  18 371
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ GAIN MUTATED      3   63
  XQ GAIN WILD-TYPE   18  371
     clus
vv    XQ GAIN MUTATED XQ GAIN WILD-TYPE
  NO                3                18
  YES              63               371
D40V11, continuous
D40V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ GAIN MUTATED    45   0   1   2
  XQ GAIN WILD-TYPE 267  10   3  16
D40V13, multiclass
    clus
vv   XQ GAIN MUTATED XQ GAIN WILD-TYPE
  R0              45               267
  R1               0                10
  R2               1                 3
  RX               2                16

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
D41V1, survival
                   sevent
clus2                 0   1
  1P LOSS MUTATED    43  25
  1P LOSS WILD-TYPE 258  93
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               68               351 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               25                93 
$`1P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 TCGA-05-4415 
       50.07         3.98        37.02         9.96        47.05         2.96 
TCGA-05-4417 TCGA-05-4422 TCGA-05-5420 TCGA-38-4628 TCGA-44-3918 TCGA-44-5643 
       14.93        12.00        15.02        49.02        34.06        33.30 
TCGA-44-6144 TCGA-44-7660 TCGA-44-A47F TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 
       23.77        10.68        11.08        35.54        32.84         8.81 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5051 TCGA-50-5935 TCGA-50-5936 TCGA-50-6594 
       17.13        11.64        14.96        21.47         8.45        12.16 
TCGA-50-6595 TCGA-50-7109 TCGA-53-7626 TCGA-55-1596 TCGA-55-6972 TCGA-55-6986 
        6.21         8.38        30.54        45.17        48.49        71.05 
TCGA-55-7283 TCGA-55-8090 TCGA-55-8615 TCGA-55-A48Y TCGA-55-A492 TCGA-62-8398 
        1.12         0.20         0.49         1.02         0.03        14.60 
TCGA-62-8402 TCGA-62-A46S TCGA-62-A46U TCGA-64-5774 TCGA-64-5778 TCGA-69-7761 
       47.47        54.35        67.96        87.98        42.90         6.12 
TCGA-69-7973 TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 TCGA-73-4677 TCGA-78-7146 
        7.56        23.38        26.27         1.32         1.25         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7159 TCGA-78-7160 TCGA-86-6562 
       20.58        35.93        24.99        40.11        22.29        12.36 
TCGA-86-7701 TCGA-86-8054 TCGA-86-8278 TCGA-86-8669 TCGA-91-8499 TCGA-95-7043 
        0.36        24.49        15.65         1.08         1.18         0.07 
TCGA-95-7567 TCGA-97-7554 TCGA-97-8172 TCGA-97-8174 TCGA-MP-A4T7 TCGA-MP-A4TD 
        5.36        25.48         5.95         5.36         5.49        10.09 
TCGA-MP-A4TE TCGA-MP-A4TJ 
       29.42        11.15 

$`1P LOSS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 
       19.92        14.01        45.01        24.03         8.02        19.00 
TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       20.05         8.98        29.95        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       26.01        25.02        25.02        24.00        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        5.95         8.68        97.74       120.79        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61        14.73        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       43.50        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       42.77         3.19         8.09        37.15        38.24         6.21 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       23.74        28.37        12.59        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       11.90        21.63        23.18        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       16.41        14.60        12.03         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       29.00        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.95        15.32         9.44         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 
       76.21        28.11        28.57        12.66        46.72        14.07 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        70.55        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5939 
        8.05         9.27         8.78        35.87        77.88        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7813 
       25.51        11.05        33.37         0.72        34.26        13.94 
TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
        9.21        23.05        38.73        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 
       60.03        24.99        40.54        38.47         0.59         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        3.12         1.32         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8091 
        1.02         0.16         1.08         0.69         3.02         1.41 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        0.85         0.13         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        7.07         1.41         0.72         0.95         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 
        2.14         3.45         1.08         0.95         1.58         0.92 
TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 
        0.16         1.55         5.29         4.54        39.95        42.38 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46V TCGA-62-A470 
       77.10        47.77        19.53        56.68        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       40.93        29.92        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        38.33         2.04        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        4.60        13.87         6.64        22.68        13.61         5.42 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.05         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 
        4.21         7.04         2.01        52.57        29.95        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.27         5.39        20.42        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       19.27        21.86        39.48        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
        5.88         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 
       10.55        32.68       208.60        39.72        77.59        10.55 
TCGA-78-8662 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
      110.50        27.06        20.71        13.87        19.43        16.70 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 
        0.33         0.43         0.79        15.75        10.92        15.85 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
        0.53         0.62         0.85         1.12         1.45         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.49        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28        10.62        41.33         1.97        10.16         2.60 
TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
       13.71        12.23        27.68         7.36         1.15        16.18 
TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        6.44         5.69         1.45         7.17         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        6.08         1.12         0.69         1.32         4.34         4.04 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 
       31.66        64.60        63.52        43.76         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        0.72         3.48         2.83         4.80         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        8.91        12.89        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 
        2.50         3.81         0.20         9.37        20.42        11.61 
TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 
       86.14        58.45        49.35        37.35        86.04        58.85 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TF TCGA-MP-A4TH 
        5.29        41.59        31.20         2.43        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        19.13        48.99 

  1P LOSS MUTATED 1P LOSS WILD-TYPE 
             0.03              0.07 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
            87.98            223.96 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
           14.765            12.660 
[1] "0.0 - 88.0 (14.8)"  "0.1 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
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  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"1P LOSS WILD-TYPE"   "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "1P LOSS MUTATED"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE"   "1P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "1P LOSS MUTATED" "1P LOSS WILD-TYPE" "1P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D41V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  1P LOSS MUTATED         1       13       16         7         9         20
  1P LOSS WILD-TYPE       2      100      115        37        56         45
                   vv
clus                STAGE IIIB STAGE IV
  1P LOSS MUTATED            4        4
  1P LOSS WILD-TYPE          7       18
D41V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1P LOSS MUTATED    16  44   8   5
  1P LOSS WILD-TYPE 125 211  31  13
D41V4, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  T1              16               125
  T2              44               211
  T3               8                31
  T4               5                13
                   vv
clus                 N0  N1 N2+N3
  1P LOSS MUTATED    36  17    20
  1P LOSS WILD-TYPE 254  68    50
D41V5, multiclass
       clus
vv      1P LOSS MUTATED 1P LOSS WILD-TYPE
  N0                 36               254
  N1                 17                68
  N2+N3              20                50
                   vv
clus                 M0  M1 M1A M1B  MX
  1P LOSS MUTATED    58   4   0   0  12
  1P LOSS WILD-TYPE 256  14   1   3 103
D41V6, multiclass
D41V7, binary
                   cls
clus                  0   1
  1P LOSS MUTATED    34  40
  1P LOSS WILD-TYPE 210 171
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED     34   40
  1P LOSS WILD-TYPE  210  171
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  FEMALE              34               210
  MALE                40               171
D41V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1P LOSS MUTATED                            3
  1P LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1P LOSS MUTATED                                  19
  1P LOSS WILD-TYPE                                73
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1P LOSS MUTATED                                                   42
  1P LOSS WILD-TYPE                                                250
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1P LOSS MUTATED                                            0
  1P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1P LOSS MUTATED                                               3
  1P LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1P LOSS MUTATED                                0
  1P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1P LOSS MUTATED                                    0
  1P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1P LOSS MUTATED                              0                             4
  1P LOSS WILD-TYPE                            2                            14
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  1P LOSS MUTATED                                 1
  1P LOSS WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1P LOSS MUTATED                                               0
  1P LOSS WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1P LOSS MUTATED                              2
  1P LOSS WILD-TYPE                            5
D41V9, multiclass
D41V10, binary
                   cls
clus                  0   1
  1P LOSS MUTATED     4  70
  1P LOSS WILD-TYPE  17 364
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1P LOSS MUTATED      4   70
  1P LOSS WILD-TYPE   17  364
     clus
vv    1P LOSS MUTATED 1P LOSS WILD-TYPE
  NO                4                17
  YES              70               364
D41V11, continuous
D41V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1P LOSS MUTATED    48   1   1   4
  1P LOSS WILD-TYPE 264   9   3  14
D41V13, multiclass
    clus
vv   1P LOSS MUTATED 1P LOSS WILD-TYPE
  R0              48               264
  R1               1                 9
  R2               1                 3
  RX               4                14

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
D42V1, survival
                   sevent
clus2                 0   1
  1Q LOSS MUTATED    17   7
  1Q LOSS WILD-TYPE 284 111
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               24               395 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
                7               111 
$`1Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4422 TCGA-05-4427 TCGA-44-5643 TCGA-44-7660 TCGA-49-4507 
        9.96        12.00        26.01        33.30        10.68         8.81 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5936 TCGA-50-6594 TCGA-50-7109 TCGA-55-6986 
       17.13        11.64         8.45        12.16         8.38        71.05 
TCGA-55-8090 TCGA-55-8620 TCGA-62-8402 TCGA-64-5774 TCGA-64-5778 TCGA-73-4666 
        0.20         2.14        47.47        87.98        42.90        26.27 
TCGA-78-7146 TCGA-86-8278 TCGA-91-8499 TCGA-95-7043 TCGA-97-8174 TCGA-MP-A4TF 
        5.65        15.65         1.18         0.07         5.36        11.05 

$`1Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
       14.93         8.98        29.95        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61        14.73        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        43.50        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
       34.06         6.21        23.74        28.37        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90        21.63        23.18 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 
       63.72        32.45        36.49        16.41        14.60        12.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        7.17        18.31        18.87        29.00        17.59        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       12.66         3.22         8.55        15.95        15.32         9.44 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
       11.08         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 
       29.46         5.16        55.89        15.02        12.13        29.26 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 
       42.31         3.88        25.51        11.05         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
        0.72        34.26        30.54        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       60.03        24.99        40.54        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 
        0.10         1.02         0.16         1.08         0.69         3.02 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 
        1.41         0.85         0.13         1.55         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        2.17         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.58         1.61         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        1.58         0.03         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-A46O 
        4.54        39.95        42.38        14.60        77.10        47.77 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       40.93        29.92        56.81        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       37.02        38.33         2.04        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        4.60        13.87         6.64         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        5.42         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 
        3.25         2.50         4.21         7.04         2.01        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       23.38        29.95        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        1.25        20.42        17.06       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
      208.60        39.72        77.59        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       12.36         0.36        20.71        13.87        19.43        16.70 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       24.49         0.33         0.43         0.79        15.75        10.92 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       15.85         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.08         0.56         0.49        14.93        13.28         0.33 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.99         0.43         1.28        10.62        41.33         1.97 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 
       10.16         2.60        13.71        12.23        27.68         7.36 
TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD 
        1.15        16.18         6.44         5.69         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 
        9.76         4.18         6.08         1.12         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         2.83         4.80         0.49         6.48         8.91 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
       12.89        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV 
        3.81         0.20         9.37        20.42        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 
       58.45        49.35        37.35        86.04        58.85         5.49 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE 
        5.29        41.59        31.20         2.43        10.09        29.42 
TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        14.10        11.15        19.13        48.99 

  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
             0.07              0.03 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
            87.98            223.96 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
           11.345            13.150 
[1] "0.1 - 88.0 (11.3)"  "0.0 - 224.0 (13.2)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "1Q LOSS MUTATED"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"1Q LOSS WILD-TYPE"   "1Q LOSS MUTATED" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" "1Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D42V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  1Q LOSS MUTATED         1        4        6         3         2          8
  1Q LOSS WILD-TYPE       2      109      125        41        63         57
                   vv
clus                STAGE IIIB STAGE IV
  1Q LOSS MUTATED            1        2
  1Q LOSS WILD-TYPE         10       20
D42V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  1Q LOSS MUTATED     8  15   2   1
  1Q LOSS WILD-TYPE 133 240  37  17
D42V4, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  T1               8               133
  T2              15               240
  T3               2                37
  T4               1                17
                   vv
clus                 N0  N1 N2+N3
  1Q LOSS MUTATED    14   6     7
  1Q LOSS WILD-TYPE 276  79    63
D42V5, multiclass
       clus
vv      1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  N0                 14               276
  N1                  6                79
  N2+N3               7                63
                   vv
clus                 M0  M1 M1A M1B  MX
  1Q LOSS MUTATED    19   1   0   1   6
  1Q LOSS WILD-TYPE 295  17   1   2 109
D42V6, multiclass
D42V7, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED    13  14
  1Q LOSS WILD-TYPE 231 197
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED     13   14
  1Q LOSS WILD-TYPE  231  197
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  FEMALE              13               231
  MALE                14               197
D42V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  1Q LOSS MUTATED                            0
  1Q LOSS WILD-TYPE                         13
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  1Q LOSS MUTATED                                   7
  1Q LOSS WILD-TYPE                                85
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  1Q LOSS MUTATED                                                   16
  1Q LOSS WILD-TYPE                                                276
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  1Q LOSS MUTATED                                            0
  1Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  1Q LOSS MUTATED                                               2
  1Q LOSS WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  1Q LOSS MUTATED                                0
  1Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  1Q LOSS MUTATED                                    0
  1Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  1Q LOSS MUTATED                              0                             1
  1Q LOSS WILD-TYPE                            2                            17
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  1Q LOSS MUTATED                                 0
  1Q LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  1Q LOSS MUTATED                                               0
  1Q LOSS WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  1Q LOSS MUTATED                              1
  1Q LOSS WILD-TYPE                            6
D42V9, multiclass
D42V10, binary
                   cls
clus                  0   1
  1Q LOSS MUTATED     3  24
  1Q LOSS WILD-TYPE  18 410
[1] "tbl2"
                   cls
clus                [,1] [,2]
  1Q LOSS MUTATED      3   24
  1Q LOSS WILD-TYPE   18  410
     clus
vv    1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  NO                3                18
  YES              24               410
D42V11, continuous
D42V12, continuous
                   vv
clus                 R0  R1  R2  RX
  1Q LOSS MUTATED    16   0   0   0
  1Q LOSS WILD-TYPE 296  10   4  18
D42V13, multiclass
    clus
vv   1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  R0              16               296
  R1               0                10
  R2               0                 4
  RX               0                18

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
D43V1, survival
                   sevent
clus2                 0   1
  2P LOSS MUTATED    17   5
  2P LOSS WILD-TYPE 284 113
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               22               397 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
                5               113 
$`2P LOSS MUTATED`
TCGA-44-2665 TCGA-44-6778 TCGA-50-5936 TCGA-50-6591 TCGA-50-7109 TCGA-55-6986 
       42.77        36.49         8.45         3.88         8.38        71.05 
TCGA-55-7726 TCGA-55-8097 TCGA-62-8397 TCGA-62-A471 TCGA-64-1676 TCGA-67-3772 
        1.02         0.49        42.38        40.93        56.81        18.84 
TCGA-71-6725 TCGA-73-7499 TCGA-78-7153 TCGA-78-7220 TCGA-86-8074 TCGA-97-7937 
        2.01        17.06        24.99        26.53         0.79         5.95 
TCGA-97-8172 TCGA-97-8174 TCGA-L4-A4E5 TCGA-MP-A4T8 
        5.95         5.36         6.97         5.29 

$`2P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2666 TCGA-44-2668 
       13.15        44.94        24.36        42.08         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        34.06         6.21        23.74        33.30 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       28.37        12.59        23.77        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
       11.90        21.63        23.18        63.72        32.45        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       14.60        10.68        12.03         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       29.00        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       15.95        15.32         9.44        11.08         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       55.89        15.02        12.13        29.26        17.13        11.64 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       20.48        71.47        70.55        14.96        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       49.28         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       21.47        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
        0.72        34.26        30.54        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       38.73        48.62        45.17         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       60.03        24.99        40.54        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 
        1.78         0.62         0.53         6.48         0.69         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        1.02         0.16         1.08         0.69         3.02         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8206 TCGA-55-8207 
        1.41         0.85         0.13         1.55         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        7.07         1.41         0.72         0.95         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        1.58         0.03         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O 
        4.54        39.95        14.60        77.10        47.47        47.77 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       29.92        20.65        39.09        55.40        37.02        38.33 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       87.98         2.04        42.90        28.41        51.25        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
        0.99        20.02        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         6.64         6.12        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 
        7.56         6.05         2.30         2.93        12.56         3.25 
TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         4.21         7.04        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
       20.42       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        21.86        39.48        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 
       28.96        10.55        32.68       208.60        39.72        77.59 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 
       10.55       110.50        27.06        12.36         0.36        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
       13.87        19.43        16.70        24.49         0.33         0.43 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
       15.75        10.92        15.65        15.85         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33         1.97        10.16         2.60        13.71 
TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
       12.23        27.68         7.36         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        5.69         1.18         1.45         7.17         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.34         4.04        31.66        64.60        63.52        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8175 TCGA-97-8177 
       25.48         0.59         0.72         3.48         2.83         4.80 
TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        0.49         6.48         8.91        12.89        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 
        7.82         2.50         3.81         0.20         9.37        20.42 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       11.61        86.14        58.45        49.35        37.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD 
       58.85         5.49        41.59        31.20         2.43        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       29.42        11.05         4.67        14.10        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  2P LOSS MUTATED 2P LOSS WILD-TYPE 
             0.49              0.03 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            71.05            223.96 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
            8.415            12.660 
[1] "0.5 - 71.0 (8.4)"   "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "2P LOSS MUTATED"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2P LOSS WILD-TYPE"   "2P LOSS MUTATED" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE"   "2P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" "2P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D43V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  2P LOSS MUTATED         2        4        9         2         3          3
  2P LOSS WILD-TYPE       1      109      122        42        62         62
                   vv
clus                STAGE IIIB STAGE IV
  2P LOSS MUTATED            0        1
  2P LOSS WILD-TYPE         11       21
D43V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2P LOSS MUTATED     7  16   1   0
  2P LOSS WILD-TYPE 134 239  38  18
D43V4, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  T1               7               134
  T2              16               239
  T3               1                38
  T4               0                18
                   vv
clus                 N0  N1 N2+N3
  2P LOSS MUTATED    18   3     3
  2P LOSS WILD-TYPE 272  82    67
D43V5, multiclass
       clus
vv      2P LOSS MUTATED 2P LOSS WILD-TYPE
  N0                 18               272
  N1                  3                82
  N2+N3               3                67
                   vv
clus                 M0  M1 M1A M1B  MX
  2P LOSS MUTATED    18   1   0   0   5
  2P LOSS WILD-TYPE 296  17   1   3 110
D43V6, multiclass
D43V7, binary
                   cls
clus                  0   1
  2P LOSS MUTATED    15   9
  2P LOSS WILD-TYPE 229 202
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED     15    9
  2P LOSS WILD-TYPE  229  202
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  FEMALE              15               229
  MALE                 9               202
D43V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2P LOSS MUTATED                            1
  2P LOSS WILD-TYPE                         12
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2P LOSS MUTATED                                   5
  2P LOSS WILD-TYPE                                87
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2P LOSS MUTATED                                                   13
  2P LOSS WILD-TYPE                                                279
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2P LOSS MUTATED                                            0
  2P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2P LOSS MUTATED                                               1
  2P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2P LOSS MUTATED                                0
  2P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2P LOSS MUTATED                                    1
  2P LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2P LOSS MUTATED                              0                             2
  2P LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  2P LOSS MUTATED                                 0
  2P LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2P LOSS MUTATED                                               0
  2P LOSS WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2P LOSS MUTATED                              1
  2P LOSS WILD-TYPE                            6
D43V9, multiclass
D43V10, binary
                   cls
clus                  0   1
  2P LOSS MUTATED     1  23
  2P LOSS WILD-TYPE  20 411
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2P LOSS MUTATED      1   23
  2P LOSS WILD-TYPE   20  411
     clus
vv    2P LOSS MUTATED 2P LOSS WILD-TYPE
  NO                1                20
  YES              23               411
D43V11, continuous
D43V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2P LOSS MUTATED    13   0   0   2
  2P LOSS WILD-TYPE 299  10   4  16
D43V13, multiclass
    clus
vv   2P LOSS MUTATED 2P LOSS WILD-TYPE
  R0              13               299
  R1               0                10
  R2               0                 4
  RX               2                16

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
D44V1, survival
                   sevent
clus2                 0   1
  2Q LOSS MUTATED    17   3
  2Q LOSS WILD-TYPE 284 115
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               20               399 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                3               115 
$`2Q LOSS MUTATED`
TCGA-44-6778 TCGA-50-5936 TCGA-50-5946 TCGA-50-6591 TCGA-55-6986 TCGA-55-8097 
       36.49         8.45        22.55         3.88        71.05         0.49 
TCGA-62-8397 TCGA-64-1676 TCGA-67-3772 TCGA-69-7760 TCGA-71-6725 TCGA-73-7499 
       42.38        56.81        18.84         6.64         2.01        17.06 
TCGA-78-7153 TCGA-86-8054 TCGA-86-8074 TCGA-97-7554 TCGA-97-7937 TCGA-97-8172 
       24.99        24.49         0.79        25.48         5.95         5.95 
TCGA-L4-A4E5 TCGA-MP-A4T8 
        6.97         5.29 

$`2Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       21.99        26.01        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       15.02        15.02         4.96        28.96        22.03         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       33.30        28.37        12.59        23.77        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       16.41        14.60        10.68        12.03         7.17        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       18.87        29.00        17.59        23.64        12.66         3.22 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G 
        8.55        15.95        15.32         9.44        11.08         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       35.54        46.72        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       11.64        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       31.04        49.28         8.05         9.27         8.78        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 
       77.88        21.47        15.12        18.64        29.00        25.12 
TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
       42.31        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ 
        0.72         8.38        34.26        30.54        13.94         9.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       23.05        38.73        48.62        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6987 TCGA-55-7281 
       32.71        60.03        24.99        40.54        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.69         0.10         1.02         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 
        3.02         0.20         1.41         0.85         0.13         1.55 
TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 
        1.51         2.17         7.07         1.41         0.72         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.36         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 
        1.55         5.29         4.54        39.95        14.60        77.10 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U 
       47.47        47.77        19.53        56.68        54.35        67.96 
TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
       72.30        39.22        40.93        29.92        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        38.33        87.98         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 
       28.41        51.25        28.44         0.99        20.02        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 
       12.66         5.69         4.60        13.87         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         5.42         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 
       12.56         3.25         2.50         4.21         7.04        52.57 
TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       23.38        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        5.39         1.25        20.42       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 
       19.27        20.58        35.93        21.86        39.48        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
      208.60        39.72        77.59        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       12.36         0.36        20.71        13.87        19.43        16.70 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.43        15.75        10.92        15.65        15.85 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
        0.53         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 
        0.56         0.49        14.93        13.28         0.33         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.43         1.28        10.62        41.33         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        2.60        13.71        12.23        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
       16.18         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        9.76         4.18         6.08         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 
        0.69         1.32         4.34         4.04        31.66        64.60 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 
       63.52        43.76         0.59         0.72         3.48         5.36 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        2.83         4.80         0.49         6.48         8.91        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.44         9.27         7.82         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY 
        9.37        20.42        11.61        86.14        58.45        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA 
       37.35        86.04        58.85         5.49        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI 
        2.43        10.09        29.42        11.05         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.15        19.13        48.99 

  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
             0.49              0.03 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
            71.05            223.96 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
           12.755            12.660 
[1] "0.5 - 71.0 (12.8)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE"   "2Q LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
[1] "hr=" "1.7"
D44V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  2Q LOSS MUTATED         1        4        9         1         4          3
  2Q LOSS WILD-TYPE       2      109      122        43        61         62
                   vv
clus                STAGE IIIB STAGE IV
  2Q LOSS MUTATED            0        1
  2Q LOSS WILD-TYPE         11       21
D44V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  2Q LOSS MUTATED     6  15   2   0
  2Q LOSS WILD-TYPE 135 240  37  18
D44V4, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  T1               6               135
  T2              15               240
  T3               2                37
  T4               0                18
                   vv
clus                 N0  N1 N2+N3
  2Q LOSS MUTATED    17   3     3
  2Q LOSS WILD-TYPE 273  82    67
D44V5, multiclass
       clus
vv      2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  N0                 17               273
  N1                  3                82
  N2+N3               3                67
                   vv
clus                 M0  M1 M1A M1B  MX
  2Q LOSS MUTATED    18   1   0   0   4
  2Q LOSS WILD-TYPE 296  17   1   3 111
D44V6, multiclass
D44V7, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED    14   9
  2Q LOSS WILD-TYPE 230 202
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED     14    9
  2Q LOSS WILD-TYPE  230  202
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  FEMALE              14               230
  MALE                 9               202
D44V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  2Q LOSS MUTATED                            3
  2Q LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  2Q LOSS MUTATED                                   4
  2Q LOSS WILD-TYPE                                88
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  2Q LOSS MUTATED                                                   11
  2Q LOSS WILD-TYPE                                                281
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  2Q LOSS MUTATED                                            0
  2Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  2Q LOSS MUTATED                                               1
  2Q LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  2Q LOSS MUTATED                                0
  2Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  2Q LOSS MUTATED                                    1
  2Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  2Q LOSS MUTATED                              0                             2
  2Q LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  2Q LOSS MUTATED                                 0
  2Q LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  2Q LOSS MUTATED                                               0
  2Q LOSS WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  2Q LOSS MUTATED                              1
  2Q LOSS WILD-TYPE                            6
D44V9, multiclass
D44V10, binary
                   cls
clus                  0   1
  2Q LOSS MUTATED     0  23
  2Q LOSS WILD-TYPE  21 411
[1] "tbl2"
                   cls
clus                [,1] [,2]
  2Q LOSS MUTATED      0   23
  2Q LOSS WILD-TYPE   21  411
     clus
vv    2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  NO                0                21
  YES              23               411
D44V11, continuous
D44V12, continuous
                   vv
clus                 R0  R1  R2  RX
  2Q LOSS MUTATED    12   0   0   1
  2Q LOSS WILD-TYPE 300  10   4  17
D44V13, multiclass
    clus
vv   2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  R0              12               300
  R1               0                10
  R2               0                 4
  RX               1                17

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
D45V1, survival
                   sevent
clus2                 0   1
  3P LOSS MUTATED   121  53
  3P LOSS WILD-TYPE 180  65
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              174               245 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
               53                65 
$`3P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4402 
       50.07        19.92        45.01        37.02        24.03         8.02 
TCGA-05-4415 TCGA-05-4432 TCGA-05-5420 TCGA-05-5425 TCGA-05-5715 TCGA-35-4122 
        2.96        25.02        15.02        28.96         2.04         7.36 
TCGA-38-4627 TCGA-38-4628 TCGA-38-6178 TCGA-44-2657 TCGA-44-2668 TCGA-44-5643 
       37.71        49.02        14.73        13.15         8.09        33.30 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 TCGA-44-6774 TCGA-44-6776 TCGA-44-6778 
       23.77        10.78        27.78        21.63        63.72        36.49 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       16.41        10.68        29.00        17.59        23.64        12.66 
TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47F TCGA-49-4501 TCGA-49-4505 
        3.22         8.55        15.95        11.08        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-50-5049 
       32.84        29.46        55.89        15.02        29.26        70.55 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 
       49.28         8.05         8.78        35.87        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 
       15.12        18.64         3.88        11.05        12.16         6.21 
TCGA-50-6597 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1595 
       33.37         0.72        34.26        30.54        38.73        48.62 
TCGA-55-1596 TCGA-55-6968 TCGA-55-6975 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 
       45.17        42.48         3.88        32.71        60.03        40.54 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7907 
        1.12         0.13         1.32         1.02         1.02         0.53 
TCGA-55-7910 TCGA-55-7914 TCGA-55-8090 TCGA-55-8094 TCGA-55-8206 TCGA-55-8506 
        6.48         0.10         0.20         0.13         1.51         0.36 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8620 TCGA-55-A48Z TCGA-55-A492 
        6.97         0.49         1.58         2.14         0.95         0.03 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 
        1.55         5.29         4.54        42.38        14.60        77.10 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A470 TCGA-62-A471 TCGA-64-1676 
       47.77        19.53        56.68        39.22        40.93        56.81 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       39.09        87.98        28.41        51.25        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-6217 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       20.02        18.84        13.87        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7979 TCGA-69-8253 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 
        7.56         2.93         3.25         2.01        23.38        29.95 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 
       26.27         4.27         1.32        20.42        17.06         5.65 
TCGA-78-7148 TCGA-78-7159 TCGA-78-7160 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
       20.58        40.11        22.29        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 TCGA-78-8640 TCGA-78-8660 TCGA-83-5908 
        8.02        10.75        10.55       208.60        10.55        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7713 TCGA-86-8054 TCGA-86-8073 TCGA-86-8278 
       12.36         0.36        13.87        24.49         0.43        15.65 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8585 TCGA-86-8669 TCGA-86-A4D0 TCGA-91-6829 
        0.53         0.62         1.12         1.08         0.99        41.33 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6847 TCGA-91-7771 TCGA-91-8499 
        1.97        10.16         2.60        27.68        16.18         1.18 
TCGA-91-A4BC TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7947 
        1.45         4.18         1.12         0.07         5.36         1.32 
TCGA-95-7948 TCGA-97-7546 TCGA-97-7554 TCGA-97-7937 TCGA-97-8174 TCGA-97-8177 
        4.34        31.66        25.48         5.95         5.36         4.80 
TCGA-97-A4M7 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-MP-A4T6 
        8.91         5.03         3.72         7.82         6.97        58.85 
TCGA-MP-A4T8 TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TF TCGA-MP-A4TI TCGA-MP-A4TJ 
        5.29         2.43        10.09        11.05        14.10        11.15 

$`3P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 
        3.98        14.01         9.96        47.05        19.00        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       26.01        26.01        25.02        24.00        15.02         4.96 
TCGA-05-5428 TCGA-05-5429 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
       22.03         0.99         0.46         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-7271 
      120.79        28.37        35.28        11.64        44.61        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        4.37        43.50        46.98        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
       42.77         3.19        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6146 TCGA-44-6148 TCGA-44-6775 
       23.74        28.37        12.59         9.93        11.90        23.18 
TCGA-44-6777 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       32.45        14.60        12.03         7.17        18.31        18.87 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
       15.32         9.44         4.44         3.75         2.50        76.21 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4507 TCGA-49-4512 
       28.11        28.57        12.66        35.54         8.81         5.16 
TCGA-49-6743 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 
       12.13        17.13        11.64        20.48        71.47        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5930 TCGA-50-5933 TCGA-50-5942 TCGA-50-5944 
       25.81        31.04         9.27        77.88        29.00        25.12 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-7109 TCGA-53-7813 TCGA-53-A4EZ 
       22.55        42.31        25.51         8.38        13.94         9.21 
TCGA-55-1592 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 
       23.05         2.86         0.07        32.61         0.79        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7574 
       45.34        24.99        71.05        38.47         0.59         3.12 
TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-7994 
        1.28         0.79         1.78         0.62         0.69         1.02 
TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8091 TCGA-55-8092 
        0.16         1.08         0.69         3.02         1.41         0.85 
TCGA-55-8096 TCGA-55-8097 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        1.55         0.49         2.17         7.07         1.41         0.72 
TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 
        0.95         7.46         0.30         0.10         4.80         1.61 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 
        3.45         1.08         1.02         1.58         0.92         0.16 
TCGA-62-8395 TCGA-62-8402 TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A472 
       39.95        47.47        54.35        67.96        72.30        29.92 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 
       20.65        55.40        37.02        38.33         2.04        42.90 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 
       14.04        12.66         5.69         4.60         6.64         6.12 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        6.05         2.30        12.56         2.50         4.21         7.04 
TCGA-73-4658 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
       52.57        15.35         5.39         1.25       163.10        27.16 
TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09         5.88         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7537 TCGA-78-7540 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 
        8.48        53.33        28.96        32.68        39.72        77.59 
TCGA-78-8662 TCGA-86-7711 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 
      110.50        20.71        19.43        16.70         0.33         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8359 TCGA-86-8668 TCGA-86-8671 
       15.75        10.92        15.85         0.85         1.45         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 
        0.49        14.93        13.28         0.33         0.43         1.28 
TCGA-91-6828 TCGA-91-6836 TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 
       10.62        13.71        12.23         7.36         1.15         6.44 
TCGA-91-8497 TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 TCGA-95-7944 TCGA-95-A4VK 
        5.69         7.17         9.76         6.08         0.69         4.04 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       64.60        63.52        43.76         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8025 
        5.95         2.83         0.49         6.48        12.89        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E6 
       15.06         1.45         5.56         9.44         9.27         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV 
        3.81         0.20         9.37        20.42        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T9 
       58.45        49.35        37.35        86.04         5.49        41.59 
TCGA-MP-A4TA TCGA-MP-A4TE TCGA-MP-A4TH TCGA-MP-A4TK TCGA-MP-A5C7 
       31.20        29.42         4.67        19.13        48.99 

  3P LOSS MUTATED 3P LOSS WILD-TYPE 
             0.03              0.07 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
           208.60            223.96 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
            13.38             12.59 
[1] "0.0 - 208.6 (13.4)" "0.1 - 224.0 (12.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "3P LOSS MUTATED"   "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "3P LOSS MUTATED"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED"   "3P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3P LOSS WILD-TYPE"   "3P LOSS MUTATED" "3P LOSS WILD-TYPE"   "3P LOSS MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "3P LOSS MUTATED" "3P LOSS WILD-TYPE" "3P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D45V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  3P LOSS MUTATED         1       44       50        24        29         29
  3P LOSS WILD-TYPE       2       69       81        20        36         36
                   vv
clus                STAGE IIIB STAGE IV
  3P LOSS MUTATED            3       11
  3P LOSS WILD-TYPE          8       11
D45V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3P LOSS MUTATED    59 116  11   4
  3P LOSS WILD-TYPE  82 139  28  14
D45V4, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  T1              59                82
  T2             116               139
  T3              11                28
  T4               4                14
                   vv
clus                 N0  N1 N2+N3
  3P LOSS MUTATED   115  40    32
  3P LOSS WILD-TYPE 175  45    38
D45V5, multiclass
       clus
vv      3P LOSS MUTATED 3P LOSS WILD-TYPE
  N0                115               175
  N1                 40                45
  N2+N3              32                38
                   vv
clus                 M0  M1 M1A M1B  MX
  3P LOSS MUTATED   133   9   0   2  46
  3P LOSS WILD-TYPE 181   9   1   1  69
D45V6, multiclass
D45V7, binary
                   cls
clus                  0   1
  3P LOSS MUTATED   102  89
  3P LOSS WILD-TYPE 142 122
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED    102   89
  3P LOSS WILD-TYPE  142  122
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  FEMALE             102               142
  MALE                89               122
D45V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3P LOSS MUTATED                            5
  3P LOSS WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3P LOSS MUTATED                                  43
  3P LOSS WILD-TYPE                                49
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3P LOSS MUTATED                                                  123
  3P LOSS WILD-TYPE                                                169
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3P LOSS MUTATED                                            0
  3P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3P LOSS MUTATED                                               6
  3P LOSS WILD-TYPE                                            11
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3P LOSS MUTATED                                1
  3P LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3P LOSS MUTATED                                    1
  3P LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3P LOSS MUTATED                              0                             6
  3P LOSS WILD-TYPE                            2                            12
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  3P LOSS MUTATED                                 1
  3P LOSS WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3P LOSS MUTATED                                               1
  3P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3P LOSS MUTATED                              4
  3P LOSS WILD-TYPE                            3
D45V9, multiclass
D45V10, binary
                   cls
clus                  0   1
  3P LOSS MUTATED     9 182
  3P LOSS WILD-TYPE  12 252
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3P LOSS MUTATED      9  182
  3P LOSS WILD-TYPE   12  252
     clus
vv    3P LOSS MUTATED 3P LOSS WILD-TYPE
  NO                9                12
  YES             182               252
D45V11, continuous
D45V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3P LOSS MUTATED   129   2   1   4
  3P LOSS WILD-TYPE 183   8   3  14
D45V13, multiclass
    clus
vv   3P LOSS MUTATED 3P LOSS WILD-TYPE
  R0             129               183
  R1               2                 8
  R2               1                 3
  RX               4                14

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
D46V1, survival
                   sevent
clus2                 0   1
  3Q LOSS MUTATED    87  36
  3Q LOSS WILD-TYPE 214  82
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
              123               296 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
               36                82 
$`3Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4390 TCGA-05-4397 TCGA-05-4415 TCGA-05-4432 TCGA-05-5420 
       50.07        37.02        24.03         2.96        25.02        15.02 
TCGA-05-5715 TCGA-35-4122 TCGA-38-4628 TCGA-44-6144 TCGA-44-6774 TCGA-44-6776 
        2.04         7.36        49.02        23.77        21.63        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
       36.49        16.41        17.59        23.64        12.66         3.22 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47F TCGA-49-4506 TCGA-49-4510 TCGA-49-6742 
        8.55        15.95        11.08        32.84        29.46        15.02 
TCGA-50-5068 TCGA-50-5932 TCGA-50-5935 TCGA-50-5936 TCGA-50-6591 TCGA-50-6593 
       49.28        35.87        21.47         8.45         3.88        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-55-1595 TCGA-55-1596 
       12.16         6.21        33.37         0.72        48.62        45.17 
TCGA-55-5899 TCGA-55-6712 TCGA-55-6975 TCGA-55-6982 TCGA-55-6983 TCGA-55-7283 
        2.86         0.79         3.88        32.71        60.03         1.12 
TCGA-55-7573 TCGA-55-7576 TCGA-55-7727 TCGA-55-7907 TCGA-55-7910 TCGA-55-8090 
        0.13         1.32         1.02         0.53         6.48         0.20 
TCGA-55-8094 TCGA-55-8206 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8620 
        0.13         1.51         6.97         0.49         1.58         2.14 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8397 
        0.95         0.03         1.55         5.29         4.54        42.38 
TCGA-62-8398 TCGA-62-8399 TCGA-62-A46P TCGA-62-A46R TCGA-62-A470 TCGA-64-1676 
       14.60        77.10        19.53        56.68        39.22        56.81 
TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 
       39.09        87.98        28.41        51.25         0.99        20.02 
TCGA-67-3772 TCGA-67-6217 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 
       18.84        13.87        22.68        13.61         5.42         6.05 
TCGA-69-8253 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4675 
        3.25         2.01        23.38        29.95        26.27         1.32 
TCGA-73-7498 TCGA-78-7148 TCGA-78-7160 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
       20.42        20.58        22.29        88.11        26.53        31.20 
TCGA-78-7539 TCGA-78-8660 TCGA-83-5908 TCGA-86-6562 TCGA-86-7713 TCGA-86-8054 
       10.75        10.55        27.06        12.36        13.87        24.49 
TCGA-86-8073 TCGA-86-8280 TCGA-86-8585 TCGA-86-A4D0 TCGA-91-6847 TCGA-91-7771 
        0.43         0.53         1.12         0.99        27.68        16.18 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        4.18         1.12         5.36         4.34         4.04        31.66 
TCGA-97-7554 TCGA-97-7937 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-J2-8192 
       25.48         5.95         5.95         5.36         4.80         5.03 
TCGA-J2-8194 TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4TC 
        3.72         7.82         6.97        58.85         5.29         2.43 
TCGA-MP-A4TD TCGA-MP-A4TI TCGA-MP-A4TJ 
       10.09        14.10        11.15 

$`3Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4398 
        3.98        19.92        14.01        45.01         9.96        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00        20.05        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 
       24.00        15.02         4.96        28.96        22.03         0.99 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       28.37        35.28        11.64        44.61        14.73        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        43.50        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
       34.06         6.21        23.74        33.30        28.37        12.59 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6777 
       10.78         9.93        27.78        11.90        23.18        32.45 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       14.60        10.68        12.03         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       29.00        15.32         9.44         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
       14.07         8.81         5.16        55.89        12.13        29.26 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       17.13        11.64        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 
       25.81        31.04         8.05         9.27         8.78        77.88 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6592 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ 
       25.51         8.38        34.26        30.54        13.94         9.21 
TCGA-55-1592 TCGA-55-1594 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       23.05        38.73         0.07        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       45.34        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        3.12         1.28         1.02         0.79         1.78         0.62 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.69         0.10         1.02         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8091 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 TCGA-55-8207 
        3.02         1.41         0.85         1.55         0.49         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        7.07         1.41         0.72         0.95         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X 
        0.30         0.10         4.80         1.61         3.45         1.08 
TCGA-55-A48Y TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-62-8395 TCGA-62-8402 
        1.02         1.58         0.92         0.16        39.95        47.47 
TCGA-62-A46O TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A471 TCGA-62-A472 
       47.77        54.35        67.96        72.30        40.93        29.92 
TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 
       20.65        55.40        37.02        38.33         2.04        42.90 
TCGA-64-5815 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 
       28.44        14.04        12.66         5.69         4.60         6.64 
TCGA-69-7761 TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 
        6.12         7.56         2.30         2.93        12.56         2.50 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
        4.21         7.04        52.57        15.35         4.27         5.39 
TCGA-73-4677 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        1.25        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       35.93        21.86        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
       32.09         5.88        40.11         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.48         8.02        53.33        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-86-7701 TCGA-86-7711 
      208.60        39.72        77.59       110.50         0.36        20.71 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       19.43        16.70         0.33         0.79        15.75        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-86-8669 
       15.65        15.85         0.62         0.85         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 
        0.56         0.49        14.93        13.28         0.33         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        1.28        10.62        41.33         1.97        10.16         2.60 
TCGA-91-6836 TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 
       13.71        12.23         7.36         1.15         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 TCGA-95-7043 
        1.18         1.45         7.17         9.76         6.08         0.07 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 
        0.69         1.32        64.60        63.52        43.76         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 
        0.72         3.48         2.83         0.49         6.48         8.91 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-A4AD 
       12.89        14.04        15.06         1.45         5.56         9.44 
TCGA-J2-A4AE TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 
        9.27         2.50         3.81         0.20         9.37        20.42 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       11.61        86.14        58.45        49.35        37.35        86.04 
TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
        5.49        41.59        31.20        29.42        11.05         4.67 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
             0.03              0.07 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            88.11            223.96 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
            12.16             13.02 
[1] "0.0 - 88.1 (12.2)"  "0.1 - 224.0 (13.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
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  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
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"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "3Q LOSS MUTATED"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED"   "3Q LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE"   "3Q LOSS MUTATED" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "3Q LOSS MUTATED" "3Q LOSS WILD-TYPE" "3Q LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D46V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  3Q LOSS MUTATED         1       28       32        16        22         23
  3Q LOSS WILD-TYPE       2       85       99        28        43         42
                   vv
clus                STAGE IIIB STAGE IV
  3Q LOSS MUTATED            3        7
  3Q LOSS WILD-TYPE          8       15
D46V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  3Q LOSS MUTATED    39  80   9   4
  3Q LOSS WILD-TYPE 102 175  30  14
D46V4, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  T1              39               102
  T2              80               175
  T3               9                30
  T4               4                14
                   vv
clus                 N0  N1 N2+N3
  3Q LOSS MUTATED    76  30    26
  3Q LOSS WILD-TYPE 214  55    44
D46V5, multiclass
       clus
vv      3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  N0                 76               214
  N1                 30                55
  N2+N3              26                44
                   vv
clus                 M0  M1 M1A M1B  MX
  3Q LOSS MUTATED    96   4   0   2  30
  3Q LOSS WILD-TYPE 218  14   1   1  85
D46V6, multiclass
D46V7, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED    69  63
  3Q LOSS WILD-TYPE 175 148
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED     69   63
  3Q LOSS WILD-TYPE  175  148
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  FEMALE              69               175
  MALE                63               148
D46V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  3Q LOSS MUTATED                            5
  3Q LOSS WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  3Q LOSS MUTATED                                  31
  3Q LOSS WILD-TYPE                                61
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  3Q LOSS MUTATED                                                   78
  3Q LOSS WILD-TYPE                                                214
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  3Q LOSS MUTATED                                            0
  3Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  3Q LOSS MUTATED                                               5
  3Q LOSS WILD-TYPE                                            12
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  3Q LOSS MUTATED                                1
  3Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  3Q LOSS MUTATED                                    1
  3Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  3Q LOSS MUTATED                              0                             5
  3Q LOSS WILD-TYPE                            2                            13
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  3Q LOSS MUTATED                                 1
  3Q LOSS WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  3Q LOSS MUTATED                                               1
  3Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  3Q LOSS MUTATED                              4
  3Q LOSS WILD-TYPE                            3
D46V9, multiclass
D46V10, binary
                   cls
clus                  0   1
  3Q LOSS MUTATED     6 126
  3Q LOSS WILD-TYPE  15 308
[1] "tbl2"
                   cls
clus                [,1] [,2]
  3Q LOSS MUTATED      6  126
  3Q LOSS WILD-TYPE   15  308
     clus
vv    3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  NO                6                15
  YES             126               308
D46V11, continuous
D46V12, continuous
                   vv
clus                 R0  R1  R2  RX
  3Q LOSS MUTATED    85   1   0   4
  3Q LOSS WILD-TYPE 227   9   4  14
D46V13, multiclass
    clus
vv   3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  R0              85               227
  R1               1                 9
  R2               0                 4
  RX               4                14

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
D47V1, survival
                   sevent
clus2                 0   1
  4P LOSS MUTATED    73  22
  4P LOSS WILD-TYPE 228  96
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               95               324 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
               22                96 
$`4P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
       50.07        24.03        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-4424 TCGA-05-5420 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
       29.95        30.02        15.02         5.95         8.68        97.74 
TCGA-44-2659 TCGA-44-3918 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
       44.94        34.06        33.30        28.37        23.77        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-8117 
        9.93        27.78        36.49        10.68        18.31        12.66 
TCGA-44-A479 TCGA-49-4487 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-6742 
       15.95        28.11        46.72        32.84         8.81        15.02 
TCGA-49-6743 TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 TCGA-50-5936 TCGA-50-5946 
       12.13        70.55        14.96        31.04         8.45        22.55 
TCGA-50-6590 TCGA-50-6673 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1596 TCGA-55-6968 
       42.31         0.72        30.54         9.21        45.17        42.48 
TCGA-55-6971 TCGA-55-6985 TCGA-55-7574 TCGA-55-7576 TCGA-55-7726 TCGA-55-7815 
        0.92        40.54         3.12         1.32         1.02         1.78 
TCGA-55-7910 TCGA-55-8505 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-A48Z 
        6.48         0.95         6.97         0.49         1.58         0.95 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8398 TCGA-62-A46U TCGA-62-A472 
        1.55         5.29         4.54        14.60        67.96        29.92 
TCGA-64-1677 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3771 TCGA-69-7763 
       20.65        42.90        28.41        28.44        20.02        22.68 
TCGA-69-7973 TCGA-69-7979 TCGA-69-A59K TCGA-71-6725 TCGA-73-4659 TCGA-73-4670 
        7.56         2.93         7.04         2.01        23.38         4.27 
TCGA-73-4675 TCGA-78-7159 TCGA-78-7536 TCGA-78-8640 TCGA-86-7713 TCGA-86-8055 
        1.32        40.11         8.02       208.60        13.87         0.33 
TCGA-86-8075 TCGA-86-8358 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6840 
       15.75         0.62        41.33         1.97        10.16        12.23 
TCGA-91-6847 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-99-8025 TCGA-99-8033 
       27.68         0.07         5.36         0.69        14.04         5.56 
TCGA-J2-A4AD TCGA-L4-A4E5 TCGA-MN-A4N4 TCGA-MP-A4TD TCGA-MP-A4TJ 
        9.44         6.97        20.42        10.09        11.15 

$`4P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
        3.98        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4403 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       19.00        14.93         8.98        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
       26.01        25.02        25.02        24.00        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
       28.96        22.03         0.99         2.04         0.46         7.36 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       13.15        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6148 
       37.15        38.24         6.21        23.74        12.59        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 
       21.63        23.18        63.72        32.45        16.41        14.60 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
       12.03         7.17        18.87        29.00        17.59        23.64 
TCGA-44-8119 TCGA-44-8120 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G 
        3.22         8.55        15.32         9.44        11.08         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        3.75         2.50        76.21        28.57        12.66        35.54 
TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-49-6745 
       14.07        29.46         5.16        55.89        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 
       11.64        20.48        71.47        25.81        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        9.27         8.78        35.87        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       18.64        29.00        25.12         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 
       12.16         6.21        33.37         8.38        34.26        13.94 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       23.05        38.73        48.62         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
        0.79        40.70        15.25        48.49         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7725 
       71.05        38.47         0.59         1.12         0.13         1.28 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 
        1.02         0.79         0.62         0.53         0.69         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        1.02         0.16         1.08         0.69         3.02         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 
        1.41         0.85         0.13         1.55         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 TCGA-55-8510 
        2.17         7.07         1.41         0.72         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        0.30         0.10         4.80         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.08         1.02         1.58         0.03         0.92         0.16 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P 
       39.95        42.38        77.10        47.47        47.77        19.53 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-64-1676 
       56.68        54.35        72.30        39.22        40.93        56.81 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        38.33        87.98         2.04 
TCGA-64-5781 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25         0.99        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        4.60        13.87         6.64         6.12        13.61         5.42 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        6.05         2.30        12.56         3.25         2.50         4.21 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 
       52.57        29.95        26.27        15.35         5.39         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 
       38.50        32.09         5.88        22.29         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 
      223.96         8.48        88.11        26.53        31.20        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 
       10.75        28.96        10.55        32.68        39.72        77.59 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 
       10.55       110.50        27.06        12.36         0.36        20.71 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 
       19.43        16.70        24.49         0.43         0.79        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       15.65        15.85         0.53         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.08         0.56         0.49        14.93        13.28         0.33 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6835 TCGA-91-6836 
        0.99         0.43         1.28        10.62         2.60        13.71 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 
        7.36         1.15        16.18         6.44         5.69         1.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        1.45         7.17         9.76         4.18         6.08         1.12 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        5.95         5.36         2.83         4.80         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 
        8.91        12.89        15.06         1.45         5.03         3.72 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        9.27         7.82         2.50         3.81         0.20         9.37 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       11.61        86.14        58.45        49.35        37.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC 
       58.85         5.49         5.29        41.59        31.20         2.43 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
       29.42        11.05         4.67        14.10        19.13        48.99 

  4P LOSS MUTATED 4P LOSS WILD-TYPE 
             0.07              0.03 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           208.60            223.96 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
           13.870            12.625 
[1] "0.1 - 208.6 (13.9)" "0.0 - 224.0 (12.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED"   "4P LOSS MUTATED"   "4P LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE"   "4P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "4P LOSS MUTATED" "4P LOSS WILD-TYPE" "4P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D47V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  4P LOSS MUTATED         1       25       34         7        13         17
  4P LOSS WILD-TYPE       2       88       97        37        52         48
                   vv
clus                STAGE IIIB STAGE IV
  4P LOSS MUTATED            5        4
  4P LOSS WILD-TYPE          6       18
D47V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4P LOSS MUTATED    31  59  10   4
  4P LOSS WILD-TYPE 110 196  29  14
D47V4, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  T1              31               110
  T2              59               196
  T3              10                29
  T4               4                14
                   vv
clus                 N0  N1 N2+N3
  4P LOSS MUTATED    66  15    21
  4P LOSS WILD-TYPE 224  70    49
D47V5, multiclass
       clus
vv      4P LOSS MUTATED 4P LOSS WILD-TYPE
  N0                 66               224
  N1                 15                70
  N2+N3              21                49
                   vv
clus                 M0  M1 M1A M1B  MX
  4P LOSS MUTATED    72   5   0   0  28
  4P LOSS WILD-TYPE 242  13   1   3  87
D47V6, multiclass
D47V7, binary
                   cls
clus                  0   1
  4P LOSS MUTATED    54  52
  4P LOSS WILD-TYPE 190 159
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED     54   52
  4P LOSS WILD-TYPE  190  159
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  FEMALE              54               190
  MALE                52               159
D47V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4P LOSS MUTATED                            3
  4P LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4P LOSS MUTATED                                  22
  4P LOSS WILD-TYPE                                70
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4P LOSS MUTATED                                                   71
  4P LOSS WILD-TYPE                                                221
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4P LOSS MUTATED                                            0
  4P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4P LOSS MUTATED                                               3
  4P LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4P LOSS MUTATED                                1
  4P LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4P LOSS MUTATED                                    0
  4P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4P LOSS MUTATED                              1                             1
  4P LOSS WILD-TYPE                            1                            17
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  4P LOSS MUTATED                                 1
  4P LOSS WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4P LOSS MUTATED                                               1
  4P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4P LOSS MUTATED                              2
  4P LOSS WILD-TYPE                            5
D47V9, multiclass
D47V10, binary
                   cls
clus                  0   1
  4P LOSS MUTATED     6 100
  4P LOSS WILD-TYPE  15 334
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4P LOSS MUTATED      6  100
  4P LOSS WILD-TYPE   15  334
     clus
vv    4P LOSS MUTATED 4P LOSS WILD-TYPE
  NO                6                15
  YES             100               334
D47V11, continuous
D47V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4P LOSS MUTATED    70   3   1   8
  4P LOSS WILD-TYPE 242   7   3  10
D47V13, multiclass
    clus
vv   4P LOSS MUTATED 4P LOSS WILD-TYPE
  R0              70               242
  R1               3                 7
  R2               1                 3
  RX               8                10

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
D48V1, survival
                   sevent
clus2                 0   1
  4Q LOSS MUTATED    80  29
  4Q LOSS WILD-TYPE 221  89
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              109               310 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
               29                89 
$`4Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
       50.07        19.92        47.05         8.02        20.05         2.96 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4434 TCGA-05-5420 TCGA-35-4123 TCGA-35-5375 
       29.95        30.02        15.02        15.02         5.95         8.68 
TCGA-38-6178 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 
       14.73        33.30        28.37        23.77        10.78        27.78 
TCGA-44-6778 TCGA-44-7660 TCGA-44-7667 TCGA-44-A479 TCGA-49-4487 TCGA-49-4501 
       36.49        10.68        18.31        15.95        28.11        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-6743 TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 
       32.84         8.81        12.13        70.55        14.96        31.04 
TCGA-50-5936 TCGA-50-5946 TCGA-50-6590 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
        8.45        22.55        42.31         6.21         0.72         8.38 
TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6968 TCGA-55-6971 
        9.21        23.05        38.73        45.17        42.48         0.92 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7726 TCGA-55-7815 TCGA-55-7910 
        0.13         3.12         1.32         1.02         1.78         6.48 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8505 TCGA-55-8514 TCGA-55-8616 TCGA-55-A48Y 
        0.85         0.13         0.95         6.97         1.58         1.02 
TCGA-55-A48Z TCGA-55-A492 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8398 TCGA-62-A46O 
        0.95         0.03         1.55         4.54        14.60        47.77 
TCGA-62-A46U TCGA-62-A472 TCGA-64-1677 TCGA-64-1679 TCGA-64-1681 TCGA-64-5778 
       67.96        29.92        20.65        55.40        38.33        42.90 
TCGA-64-5779 TCGA-67-3771 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7979 
       28.41        20.02        22.68        13.61         7.56         2.93 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 
        4.21         2.01        23.38        29.95         4.27         1.32 
TCGA-78-7159 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-8640 TCGA-86-7713 
       40.11        88.11        31.20         8.02       208.60        13.87 
TCGA-86-7955 TCGA-86-8055 TCGA-86-8075 TCGA-86-8279 TCGA-86-8669 TCGA-86-8672 
       16.70         0.33        15.75        15.85         1.08         0.49 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6840 TCGA-91-6847 TCGA-95-7043 
       41.33         1.97        10.16        12.23        27.68         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-97-7937 TCGA-99-8025 TCGA-99-8032 TCGA-99-8033 
        5.36         0.69         5.95        14.04         1.45         5.56 
TCGA-J2-A4AD TCGA-L4-A4E5 TCGA-MN-A4N4 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TF 
        9.44         6.97        20.42        31.20        10.09        11.05 
TCGA-MP-A4TJ 
       11.15 

$`4Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4403 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       19.00        14.93         8.98        12.00        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5423 TCGA-05-5425 
       26.01        25.02        25.02        24.00         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 
       22.03         0.99         2.04         0.46         7.36        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       44.61        26.30         4.37        43.50        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
       37.15        38.24        34.06         6.21        23.74        12.59 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 
       16.41        14.60        12.03         7.17        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A47A 
       17.59        23.64        12.66         3.22         8.55        15.32 
TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 
        9.44        11.08         4.44         3.75         2.50        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4510 TCGA-49-4512 
       28.57        12.66        35.54        14.07        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       55.89        15.02        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 
       71.47        25.81        49.28         8.05         9.27         8.78 
TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       35.87        77.88        21.47        15.12        18.64        29.00 
TCGA-50-5944 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       25.12         3.88        25.51        11.05        12.16        33.37 
TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       34.26        30.54        13.94        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 
       32.61         0.79        40.70        15.25        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         0.79         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 
        0.10         1.02         0.16         1.08         0.69         3.02 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        0.20         1.41         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 
        7.07         1.41         0.72         0.36         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        0.10         4.80         0.49         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DG TCGA-62-8395 
        1.08         1.58         0.92         0.16         5.29        39.95 
TCGA-62-8397 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       42.38        77.10        47.47        19.53        56.68        54.35 
TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 
       72.30        39.22        40.93        56.81        39.09        37.02 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 
       87.98         2.04        51.25        28.44         0.99        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
       14.04        12.66         5.69         4.60        13.87         6.64 
TCGA-69-7761 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
        6.12         5.42         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-A59K TCGA-73-4658 TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 
        2.50         7.04        52.57        26.27        15.35         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
       19.27        20.58        35.93        21.86        39.48        24.99 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 
       19.50        38.50        32.09         5.88        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
      104.15       223.96         8.48        26.53        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 
       28.96        10.55        32.68        39.72        77.59        10.55 
TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 
      110.50        27.06        12.36         0.36        20.71        19.43 
TCGA-86-8054 TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
       24.49         0.43         0.79        10.92        15.65         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8673 
        0.62         0.85         1.12         1.45         0.56        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       13.28         0.33         0.99         0.43         1.28        10.62 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
        2.60        13.71         7.36         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        5.69         1.18         1.45         7.17         9.76         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        6.08         1.12         1.32         4.34         4.04        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 
       64.60        63.52        43.76        25.48         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 
        3.48         5.95         5.36         2.83         4.80         0.49 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-8194 
        6.48         8.91        12.89        15.06         5.03         3.72 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        9.27         7.82         2.50         3.81         0.20         9.37 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       11.61        86.14        58.45        49.35        37.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TC TCGA-MP-A4TE 
       58.85         5.49         5.29        41.59         2.43        29.42 
TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        14.10        19.13        48.99 

  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
             0.03              0.07 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
           208.60            223.96 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
            13.61             12.66 
[1] "0.0 - 208.6 (13.6)" "0.1 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
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"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "4Q LOSS MUTATED"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED"   "4Q LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"4Q LOSS WILD-TYPE"   "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "4Q LOSS MUTATED" "4Q LOSS WILD-TYPE" "4Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D48V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  4Q LOSS MUTATED         2       33       34        10         9         21
  4Q LOSS WILD-TYPE       1       80       97        34        56         44
                   vv
clus                STAGE IIIB STAGE IV
  4Q LOSS MUTATED            5        7
  4Q LOSS WILD-TYPE          6       15
D48V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  4Q LOSS MUTATED    38  67   9   5
  4Q LOSS WILD-TYPE 103 188  30  13
D48V4, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  T1              38               103
  T2              67               188
  T3               9                30
  T4               5                13
                   vv
clus                 N0  N1 N2+N3
  4Q LOSS MUTATED    79  13    25
  4Q LOSS WILD-TYPE 211  72    45
D48V5, multiclass
       clus
vv      4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  N0                 79               211
  N1                 13                72
  N2+N3              25                45
                   vv
clus                 M0  M1 M1A M1B  MX
  4Q LOSS MUTATED    80   7   0   1  31
  4Q LOSS WILD-TYPE 234  11   1   2  84
D48V6, multiclass
D48V7, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED    61  60
  4Q LOSS WILD-TYPE 183 151
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED     61   60
  4Q LOSS WILD-TYPE  183  151
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  FEMALE              61               183
  MALE                60               151
D48V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  4Q LOSS MUTATED                            3
  4Q LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  4Q LOSS MUTATED                                  21
  4Q LOSS WILD-TYPE                                71
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  4Q LOSS MUTATED                                                   86
  4Q LOSS WILD-TYPE                                                206
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  4Q LOSS MUTATED                                            0
  4Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  4Q LOSS MUTATED                                               3
  4Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  4Q LOSS MUTATED                                1
  4Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  4Q LOSS MUTATED                                    1
  4Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  4Q LOSS MUTATED                              0                             2
  4Q LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  4Q LOSS MUTATED                                 1
  4Q LOSS WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  4Q LOSS MUTATED                                               1
  4Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  4Q LOSS MUTATED                              2
  4Q LOSS WILD-TYPE                            5
D48V9, multiclass
D48V10, binary
                   cls
clus                  0   1
  4Q LOSS MUTATED     6 115
  4Q LOSS WILD-TYPE  15 319
[1] "tbl2"
                   cls
clus                [,1] [,2]
  4Q LOSS MUTATED      6  115
  4Q LOSS WILD-TYPE   15  319
     clus
vv    4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  NO                6                15
  YES             115               319
D48V11, continuous
D48V12, continuous
                   vv
clus                 R0  R1  R2  RX
  4Q LOSS MUTATED    80   4   2   8
  4Q LOSS WILD-TYPE 232   6   2  10
D48V13, multiclass
    clus
vv   4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  R0              80               232
  R1               4                 6
  R2               2                 2
  RX               8                10

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
D49V1, survival
                   sevent
clus2                 0   1
  5P LOSS MUTATED    30   5
  5P LOSS WILD-TYPE 271 113
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               35               384 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
                5               113 
$`5P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4420 TCGA-05-4432 TCGA-35-4122 TCGA-35-4123 
       50.07        19.92        29.95        25.02         7.36         5.95 
TCGA-44-6144 TCGA-44-6145 TCGA-44-8120 TCGA-49-6742 TCGA-50-6590 TCGA-55-1596 
       23.77        10.78         8.55        15.02        42.31        45.17 
TCGA-55-6968 TCGA-55-6975 TCGA-55-7281 TCGA-55-7914 TCGA-55-7994 TCGA-55-8505 
       42.48         3.88         0.59         0.10         1.02         0.95 
TCGA-55-A492 TCGA-62-8398 TCGA-64-5779 TCGA-67-3771 TCGA-67-3772 TCGA-69-7979 
        0.03        14.60        28.41        20.02        18.84         2.93 
TCGA-69-8255 TCGA-78-7160 TCGA-78-7161 TCGA-86-7713 TCGA-86-7955 TCGA-86-8074 
        4.21        22.29         7.04        13.87        16.70         0.79 
TCGA-91-6829 TCGA-95-7043 TCGA-97-8175 TCGA-MN-A4N1 TCGA-MN-A4N4 
       41.33         0.07         2.83         9.37        20.42 

$`5P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
       47.05         8.02        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 
       22.03         0.99         2.04         0.46         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 
       44.61        14.73        26.30         4.37        43.50        46.98 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       33.30        28.37        12.59         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       21.63        23.18        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       14.60        10.68        12.03         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       29.00        17.59        23.64        12.66         3.22        15.95 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.32         9.44        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        29.26        17.13        11.64        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        9.27         8.78        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
       15.12        18.64        29.00        25.12        22.55         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
        8.38        34.26        30.54        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 
       40.70        15.25         0.92        48.49         5.46         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       71.05        38.47         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 
        1.28         1.02         1.02         0.79         1.78         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.53         6.48         0.69         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 
        3.02         0.20         1.41         0.85         0.13         1.55 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        0.49         1.51         2.17         7.07         1.41         0.72 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.36         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF 
        1.02         0.95         1.58         0.92         0.16         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-8402 
        5.29         4.54        39.95        42.38        77.10        47.47 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.77        19.53        56.68        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 
       39.22        40.93        29.92        56.81        20.65        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        38.33        87.98         2.04        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25        28.44         0.99        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        4.60        13.87         6.64         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 
        5.42         7.56         6.05         2.30        12.56         3.25 
TCGA-69-8254 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 
        2.50         7.04         2.01        52.57        23.38        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 
       26.27        15.35         4.27         1.32         5.39         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
       20.42        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09         5.88        40.11       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 
        8.48        88.11        26.53        31.20         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       10.75        28.96        10.55        32.68       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 
       77.59        10.55       110.50        27.06        12.36         0.36 
TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 
       20.71        19.43        24.49         0.33         0.43        15.75 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
       10.92        15.65        15.85         0.53         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 
        1.12         1.45         1.08         0.56         0.49        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       13.28         0.33         0.99         0.43         1.28        10.62 
TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 
        1.97        10.16         2.60        13.71        12.23        27.68 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 
        7.36         1.15        16.18         6.44         5.69         1.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        1.45         7.17         9.76         4.18         6.08         1.12 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        5.36         0.69         1.32         4.34         4.04        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       64.60        63.52        43.76        25.48         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        6.48         8.91        12.89        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG 
        5.56         5.03         3.72         9.44         9.27         7.82 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N5 TCGA-MP-A4SV 
        6.97         2.50         3.81         0.20        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 
       58.45        49.35        37.35        86.04        58.85         5.49 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE 
        5.29        41.59        31.20         2.43        10.09        29.42 
TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       11.05         4.67        14.10        11.15        19.13        48.99 

  5P LOSS MUTATED 5P LOSS WILD-TYPE 
             0.03              0.07 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            50.07            223.96 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
            13.87             12.66 
[1] "0.0 - 50.1 (13.9)"  "0.1 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
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"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "5P LOSS MUTATED" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"5P LOSS WILD-TYPE"   "5P LOSS MUTATED"   "5P LOSS MUTATED" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" "5P LOSS WILD-TYPE" 
[1] "hr=" "1.5"
D49V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  5P LOSS MUTATED         0       11       11         4         8          3
  5P LOSS WILD-TYPE       3      102      120        40        57         62
                   vv
clus                STAGE IIIB STAGE IV
  5P LOSS MUTATED            0        1
  5P LOSS WILD-TYPE         11       21
D49V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5P LOSS MUTATED    13  20   3   1
  5P LOSS WILD-TYPE 128 235  36  17
D49V4, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  T1              13               128
  T2              20               235
  T3               3                36
  T4               1                17
                   vv
clus                 N0  N1 N2+N3
  5P LOSS MUTATED    26   8     4
  5P LOSS WILD-TYPE 264  77    66
D49V5, multiclass
       clus
vv      5P LOSS MUTATED 5P LOSS WILD-TYPE
  N0                 26               264
  N1                  8                77
  N2+N3               4                66
                   vv
clus                 M0  M1 M1A M1B  MX
  5P LOSS MUTATED    28   2   0   0   8
  5P LOSS WILD-TYPE 286  16   1   3 107
D49V6, multiclass
D49V7, binary
                   cls
clus                  0   1
  5P LOSS MUTATED    13  25
  5P LOSS WILD-TYPE 231 186
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED     13   25
  5P LOSS WILD-TYPE  231  186
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  FEMALE              13               231
  MALE                25               186
D49V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5P LOSS MUTATED                            2
  5P LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5P LOSS MUTATED                                   8
  5P LOSS WILD-TYPE                                84
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5P LOSS MUTATED                                                   24
  5P LOSS WILD-TYPE                                                268
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5P LOSS MUTATED                                            0
  5P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5P LOSS MUTATED                                               1
  5P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5P LOSS MUTATED                                0
  5P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5P LOSS MUTATED                                    0
  5P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5P LOSS MUTATED                              0                             0
  5P LOSS WILD-TYPE                            2                            18
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  5P LOSS MUTATED                                 0
  5P LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5P LOSS MUTATED                                               2
  5P LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5P LOSS MUTATED                              1
  5P LOSS WILD-TYPE                            6
D49V9, multiclass
D49V10, binary
                   cls
clus                  0   1
  5P LOSS MUTATED     1  37
  5P LOSS WILD-TYPE  20 397
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5P LOSS MUTATED      1   37
  5P LOSS WILD-TYPE   20  397
     clus
vv    5P LOSS MUTATED 5P LOSS WILD-TYPE
  NO                1                20
  YES              37               397
D49V11, continuous
D49V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5P LOSS MUTATED    25   1   0   2
  5P LOSS WILD-TYPE 287   9   4  16
D49V13, multiclass
    clus
vv   5P LOSS MUTATED 5P LOSS WILD-TYPE
  R0              25               287
  R1               1                 9
  R2               0                 4
  RX               2                16

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
D50V1, survival
                   sevent
clus2                 0   1
  5Q LOSS MUTATED    98  25
  5Q LOSS WILD-TYPE 203  93
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              123               296 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
               25                93 
$`5Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-4396 TCGA-05-4405 TCGA-05-4417 
       50.07        19.92        45.01         9.96        20.05        14.93 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-05-5425 TCGA-05-5428 
       29.95        30.02        26.01        25.02        28.96        22.03 
TCGA-05-5715 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 
        2.04         7.36         5.95        97.74        49.02        35.28 
TCGA-38-4631 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       11.64        33.30        28.37        23.77        10.78         9.93 
TCGA-44-6775 TCGA-44-6778 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7670 
       23.18        36.49        10.68         7.17        18.31        29.00 
TCGA-44-8120 TCGA-44-A4SS TCGA-49-4505 TCGA-49-6742 TCGA-50-5045 TCGA-50-5049 
        8.55         3.75        14.07        15.02        71.47        70.55 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5941 TCGA-50-5946 TCGA-50-6590 TCGA-50-6593 
       31.04        49.28        18.64        22.55        42.31        11.05 
TCGA-53-7624 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       34.26         9.21        23.05        38.73        45.17         2.86 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6975 TCGA-55-6979 TCGA-55-6985 TCGA-55-7281 
       42.48        40.70         3.88         7.76        40.54         0.59 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7907 TCGA-55-7914 TCGA-55-7994 TCGA-55-8094 
        1.02         1.02         0.53         0.10         1.02         0.13 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8615 
        0.72         0.95         0.36         7.46         0.30         0.49 
TCGA-55-8616 TCGA-55-8620 TCGA-55-A48Y TCGA-55-A492 TCGA-62-8394 TCGA-62-8395 
        1.58         2.14         1.02         0.03         4.54        39.95 
TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A470 TCGA-62-A471 TCGA-64-1676 
       14.60        77.10        47.47        39.22        40.93        56.81 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5778 TCGA-64-5779 TCGA-67-3771 TCGA-67-3772 
       55.40        38.33        42.90        28.41        20.02        18.84 
TCGA-69-7765 TCGA-69-7979 TCGA-69-8255 TCGA-71-6725 TCGA-73-4668 TCGA-78-7149 
        5.42         2.93         4.21         2.01        15.35        35.93 
TCGA-78-7150 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7167 TCGA-86-6562 
       21.86        40.11        22.29         7.04        88.11        12.36 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8073 TCGA-86-8074 TCGA-86-8279 
       13.87        19.43        16.70         0.43         0.79        15.85 
TCGA-86-8585 TCGA-86-8672 TCGA-91-6829 TCGA-91-6840 TCGA-91-8499 TCGA-93-8067 
        1.12         0.49        41.33        12.23         1.18         6.08 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-7937 TCGA-97-8175 
        1.12         0.07         5.36         4.34         5.95         2.83 
TCGA-99-8025 TCGA-J2-A4AD TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MP-A4T6 
       14.04         9.44         0.20         9.37        20.42        58.85 
TCGA-MP-A4TC TCGA-MP-A4TE TCGA-MP-A5C7 
        2.43        29.42        48.99 

$`5Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        3.98        14.01        37.02        24.03        47.05         8.02 
TCGA-05-4403 TCGA-05-4415 TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       19.00         2.96         8.98        12.00        21.99        26.01 
TCGA-05-4430 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 
       25.02        24.00        15.02        15.02         4.96         0.99 
TCGA-35-3615 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4632 
        0.46         8.68       120.79        37.71        28.37        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       14.73        26.30         4.37        43.50        46.98        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       44.94        24.36        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
       37.15        38.24        34.06         6.21        23.74        12.59 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6779 
       27.78        11.90        21.63        63.72        32.45        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       14.60        12.03        18.87        17.59        23.64        12.66 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G 
        3.22        15.95        15.32         9.44        11.08         4.44 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       46.72        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5051 
       12.13        29.26        17.13        11.64        20.48        14.96 
TCGA-50-5055 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       25.81         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-6591 
       21.47         8.45        15.12        29.00        25.12         3.88 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       30.54        13.94        48.62         0.07        32.61         0.79 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6980 TCGA-55-6981 
       15.25         0.92        48.49         5.46         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 
       32.71        60.03        24.99        71.05        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 
        0.13         3.12         1.32         1.28         0.79         1.78 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.62         6.48         0.69         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 
        3.02         0.20         1.41         0.85         1.55         0.49 
TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8512 TCGA-55-8513 
        1.51         2.17         7.07         1.41         0.10         4.80 
TCGA-55-8514 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Z TCGA-55-A490 
        6.97         1.61         3.45         1.08         0.95         1.58 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8397 TCGA-62-A46O 
        0.92         0.16         1.55         5.29        42.38        47.77 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A472 
       19.53        56.68        54.35        67.96        72.30        29.92 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 
       20.65        39.09        37.02        87.98         2.04        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.44         0.99        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 
       13.87         6.64         6.12        22.68        13.61         7.56 
TCGA-69-7974 TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-A59K 
        6.05         2.30        12.56         3.25         2.50         7.04 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
       52.57        23.38        29.95        26.27         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        5.39         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
        5.65        19.27        20.58        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       38.50        32.09         5.88       104.15       223.96         8.48 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 
       10.55        32.68       208.60        39.72        77.59        10.55 
TCGA-78-8662 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-8054 TCGA-86-8055 
      110.50        27.06         0.36        20.71        24.49         0.33 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 
       15.75        10.92        15.65         0.53         0.62         0.85 
TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.45         1.08         0.56        14.93        13.28         0.33 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 
        0.99         0.43         1.28        10.62         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
        2.60        13.71        27.68         7.36         1.15        16.18 
TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        6.44         5.69         1.45         7.17         9.76         4.18 
TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       43.76        25.48         0.59         0.72         3.48         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        5.36         4.80         0.49         6.48         8.91        12.89 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE 
       15.06         1.45         5.56         5.03         3.72         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N5 TCGA-MP-A4SV 
        7.82         6.97         2.50         3.81        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 
       58.45        49.35        37.35        86.04         5.49         5.29 
TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI 
       41.59        31.20        10.09        11.05         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A4TK 
       11.15        19.13 

  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
             0.03              0.07 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
            97.74            223.96 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
           14.930            12.145 
[1] "0.0 - 97.7 (14.9)"  "0.1 - 224.0 (12.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "5Q LOSS MUTATED"   "5Q LOSS MUTATED"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "5Q LOSS MUTATED" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"5Q LOSS WILD-TYPE" "5Q LOSS WILD-TYPE"   "5Q LOSS MUTATED" 
[1] "hr=" "1.6"
D50V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  5Q LOSS MUTATED         0       31       41        14        23         15
  5Q LOSS WILD-TYPE       3       82       90        30        42         50
                   vv
clus                STAGE IIIB STAGE IV
  5Q LOSS MUTATED            3        6
  5Q LOSS WILD-TYPE          8       16
D50V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  5Q LOSS MUTATED    39  76  12   5
  5Q LOSS WILD-TYPE 102 179  27  13
D50V4, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  T1              39               102
  T2              76               179
  T3              12                27
  T4               5                13
                   vv
clus                 N0  N1 N2+N3
  5Q LOSS MUTATED    86  29    17
  5Q LOSS WILD-TYPE 204  56    53
D50V5, multiclass
       clus
vv      5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  N0                 86               204
  N1                 29                56
  N2+N3              17                53
                   vv
clus                 M0  M1 M1A M1B  MX
  5Q LOSS MUTATED    89   4   0   2  37
  5Q LOSS WILD-TYPE 225  14   1   1  78
D50V6, multiclass
D50V7, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED    59  74
  5Q LOSS WILD-TYPE 185 137
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED     59   74
  5Q LOSS WILD-TYPE  185  137
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  FEMALE              59               185
  MALE                74               137
D50V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  5Q LOSS MUTATED                            4
  5Q LOSS WILD-TYPE                          9
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  5Q LOSS MUTATED                                  31
  5Q LOSS WILD-TYPE                                61
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  5Q LOSS MUTATED                                                   84
  5Q LOSS WILD-TYPE                                                208
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  5Q LOSS MUTATED                                            0
  5Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  5Q LOSS MUTATED                                               3
  5Q LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  5Q LOSS MUTATED                                0
  5Q LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  5Q LOSS MUTATED                                    2
  5Q LOSS WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  5Q LOSS MUTATED                              1                             4
  5Q LOSS WILD-TYPE                            1                            14
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  5Q LOSS MUTATED                                 0
  5Q LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  5Q LOSS MUTATED                                               3
  5Q LOSS WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  5Q LOSS MUTATED                              1
  5Q LOSS WILD-TYPE                            6
D50V9, multiclass
D50V10, binary
                   cls
clus                  0   1
  5Q LOSS MUTATED     4 129
  5Q LOSS WILD-TYPE  17 305
[1] "tbl2"
                   cls
clus                [,1] [,2]
  5Q LOSS MUTATED      4  129
  5Q LOSS WILD-TYPE   17  305
     clus
vv    5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  NO                4                17
  YES             129               305
D50V11, continuous
D50V12, continuous
                   vv
clus                 R0  R1  R2  RX
  5Q LOSS MUTATED    88   3   0  10
  5Q LOSS WILD-TYPE 224   7   4   8
D50V13, multiclass
    clus
vv   5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  R0              88               224
  R1               3                 7
  R2               0                 4
  RX              10                 8

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
D51V1, survival
                   sevent
clus2                 0   1
  6P LOSS MUTATED    56  31
  6P LOSS WILD-TYPE 245  87
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               87               332 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
               31                87 
$`6P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4389 TCGA-05-4390 TCGA-05-4415 TCGA-35-4123 TCGA-38-4631 
        3.98        45.01        37.02         2.96         5.95        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2662 TCGA-44-2668 TCGA-44-6775 TCGA-44-6777 
       44.61        14.73        42.08         8.09        23.18        32.45 
TCGA-44-A47F TCGA-49-4486 TCGA-49-4488 TCGA-49-4505 TCGA-49-4512 TCGA-49-6745 
       11.08        76.21        28.57        14.07         5.16        17.13 
TCGA-50-5051 TCGA-50-5068 TCGA-50-5932 TCGA-50-5935 TCGA-50-6597 TCGA-53-7626 
       14.96        49.28        35.87        21.47        33.37        30.54 
TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6981 TCGA-55-6983 TCGA-55-6985 
       42.48         0.92        48.49        45.34        60.03        40.54 
TCGA-55-7283 TCGA-55-7576 TCGA-55-7815 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 
        1.12         1.32         1.78         3.02         0.20         1.41 
TCGA-55-8207 TCGA-55-8302 TCGA-55-8506 TCGA-55-8616 TCGA-55-A48X TCGA-55-A494 
        2.17         0.72         0.36         1.58         1.08         0.16 
TCGA-62-8402 TCGA-62-A46R TCGA-62-A46S TCGA-62-A472 TCGA-64-1676 TCGA-64-5781 
       47.47        56.68        54.35        29.92        56.81        51.25 
TCGA-69-7760 TCGA-69-7974 TCGA-69-8253 TCGA-69-8254 TCGA-69-A59K TCGA-73-4659 
        6.64         6.05         3.25         2.50         7.04        23.38 
TCGA-73-4666 TCGA-73-4675 TCGA-78-7146 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       26.27         1.32         5.65        39.48        24.99        19.50 
TCGA-78-7158 TCGA-78-7535 TCGA-78-7536 TCGA-83-5908 TCGA-86-7701 TCGA-86-7713 
        5.88        31.20         8.02        27.06         0.36        13.87 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8359 TCGA-86-8672 TCGA-91-6831 
       19.43        16.70        24.49         0.85         0.49        10.16 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7948 TCGA-97-7547 TCGA-97-8174 
        9.76         4.18         0.07         4.34        64.60         5.36 
TCGA-99-7458 TCGA-J2-8192 TCGA-MN-A4N1 TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4TC 
       12.89         5.03         9.37        49.35        37.35         2.43 
TCGA-MP-A4TF TCGA-MP-A4TK TCGA-MP-A5C7 
       11.05        19.13        48.99 

$`6P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       50.07        19.92        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
        8.02        19.00        20.05        14.93         8.98        29.95 
TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       12.00        30.02        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-5375 
       22.03         0.99         2.04         0.46         7.36         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 
       26.30         4.37        43.50        46.98        13.15        44.94 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       24.36        42.77         3.19        37.15        38.24        34.06 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
        6.21        23.74        33.30        28.37        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 
       10.78         9.93        27.78        11.90        21.63        63.72 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        29.00        17.59        23.64        12.66 
TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G 
        3.22         8.55        15.95        15.32         9.44         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
        3.75         2.50        28.11        12.66        35.54        46.72 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       32.84         8.81        29.46        55.89        15.02        12.13 
TCGA-49-6744 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       29.26        11.64        20.48        71.47        70.55        25.81 
TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5936 
       31.04         8.05         9.27         8.78        77.88         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
        3.88        25.51        11.05        12.16         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 
        8.38        34.26        13.94         9.21        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       40.70        15.25         3.88         5.46         7.76         2.20 
TCGA-55-6982 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7573 
       32.71        24.99        71.05        38.47         0.59         0.13 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7903 
        3.12         1.28         1.02         1.02         0.79         0.62 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 
        0.53         6.48         0.69         0.10         1.02         0.16 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 
        1.08         0.69         0.85         0.13         1.55         0.49 
TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 
        1.51         7.07         1.41         0.95         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         6.97         0.49         1.61         2.14 
TCGA-55-8621 TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        3.45         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        1.55         5.29         4.54        39.95        42.38        14.60 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       77.10        47.77        19.53        67.96        72.30        39.22 
TCGA-62-A471 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 
       40.93        20.65        39.09        55.40        37.02        38.33 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3770 
       87.98         2.04        42.90        28.41        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
       13.87         6.12        22.68        13.61         5.42         7.56 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.30         2.93        12.56         4.21         2.01        52.57 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        15.35         4.27         5.39         1.25        20.42 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       17.06       163.10        27.16        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7155 TCGA-78-7156 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       21.86        38.50        32.09        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 
      104.15       223.96         8.48        88.11        26.53        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       10.75        28.96        10.55        32.68       208.60        39.72 
TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-86-6562 TCGA-86-7711 TCGA-86-8055 
       77.59        10.55       110.50        12.36        20.71         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.43         0.79        15.75        10.92        15.65        15.85 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.53         0.62         1.12         1.45         1.08         0.56 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
       10.62        41.33         1.97         2.60        13.71        12.23 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 
       27.68         7.36         1.15        16.18         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 
        1.18         1.45         7.17         6.08         1.12         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32         4.04        31.66        63.52        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       25.48         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8025 
        2.83         4.80         0.49         6.48         8.91        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
       15.06         1.45         5.56         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        7.82         6.97         2.50         3.81         0.20        20.42 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 
       11.61        86.14        58.45        86.04        58.85         5.49 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TH 
        5.29        41.59        31.20        10.09        29.42         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ 
       14.10        11.15 

  6P LOSS MUTATED 6P LOSS WILD-TYPE 
             0.07              0.03 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
            76.21            223.96 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
           13.870            12.625 
[1] "0.1 - 76.2 (13.9)"  "0.0 - 224.0 (12.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED" "6P LOSS WILD-TYPE" "6P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6P LOSS WILD-TYPE"   "6P LOSS MUTATED"   "6P LOSS MUTATED" 
[1] "hr=" "1.4"
D51V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  6P LOSS MUTATED         0       15       32         8        14         18
  6P LOSS WILD-TYPE       3       98       99        36        51         47
                   vv
clus                STAGE IIIB STAGE IV
  6P LOSS MUTATED            3        3
  6P LOSS WILD-TYPE          8       19
D51V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6P LOSS MUTATED    20  59  10   4
  6P LOSS WILD-TYPE 121 196  29  14
D51V4, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  T1              20               121
  T2              59               196
  T3              10                29
  T4               4                14
                   vv
clus                 N0  N1 N2+N3
  6P LOSS MUTATED    57  17    18
  6P LOSS WILD-TYPE 233  68    52
D51V5, multiclass
       clus
vv      6P LOSS MUTATED 6P LOSS WILD-TYPE
  N0                 57               233
  N1                 17                68
  N2+N3              18                52
                   vv
clus                 M0  M1 M1A M1B  MX
  6P LOSS MUTATED    63   4   0   0  25
  6P LOSS WILD-TYPE 251  14   1   3  90
D51V6, multiclass
D51V7, binary
                   cls
clus                  0   1
  6P LOSS MUTATED    47  47
  6P LOSS WILD-TYPE 197 164
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED     47   47
  6P LOSS WILD-TYPE  197  164
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  FEMALE              47               197
  MALE                47               164
D51V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6P LOSS MUTATED                            3
  6P LOSS WILD-TYPE                         10
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6P LOSS MUTATED                                  18
  6P LOSS WILD-TYPE                                74
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6P LOSS MUTATED                                                   64
  6P LOSS WILD-TYPE                                                228
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6P LOSS MUTATED                                            0
  6P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6P LOSS MUTATED                                               2
  6P LOSS WILD-TYPE                                            15
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6P LOSS MUTATED                                0
  6P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6P LOSS MUTATED                                    0
  6P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6P LOSS MUTATED                              0                             4
  6P LOSS WILD-TYPE                            2                            14
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  6P LOSS MUTATED                                 0
  6P LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6P LOSS MUTATED                                               1
  6P LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6P LOSS MUTATED                              2
  6P LOSS WILD-TYPE                            5
D51V9, multiclass
D51V10, binary
                   cls
clus                  0   1
  6P LOSS MUTATED     5  89
  6P LOSS WILD-TYPE  16 345
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6P LOSS MUTATED      5   89
  6P LOSS WILD-TYPE   16  345
     clus
vv    6P LOSS MUTATED 6P LOSS WILD-TYPE
  NO                5                16
  YES              89               345
D51V11, continuous
D51V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6P LOSS MUTATED    68   3   1   4
  6P LOSS WILD-TYPE 244   7   3  14
D51V13, multiclass
    clus
vv   6P LOSS MUTATED 6P LOSS WILD-TYPE
  R0              68               244
  R1               3                 7
  R2               1                 3
  RX               4                14

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
D52V1, survival
                   sevent
clus2                 0   1
  6Q LOSS MUTATED   124  54
  6Q LOSS WILD-TYPE 177  64
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              178               241 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
               54                64 
$`6Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4405 TCGA-05-4415 
        3.98        19.92        45.01        37.02        20.05         2.96 
TCGA-05-4425 TCGA-05-4430 TCGA-05-5428 TCGA-05-5429 TCGA-35-3615 TCGA-35-4123 
       21.99        25.02        22.03         0.99         0.46         5.95 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 
       11.64        44.61        14.73        46.98        44.94        42.08 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3918 TCGA-44-5644 TCGA-44-6147 TCGA-44-6774 
        3.19         8.09        34.06        28.37        27.78        21.63 
TCGA-44-6775 TCGA-44-6777 TCGA-44-6779 TCGA-44-7659 TCGA-44-8117 TCGA-44-8120 
       23.18        32.45        16.41        14.60        12.66         8.55 
TCGA-44-A47F TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 
       11.08         2.50        76.21        28.57        35.54        14.07 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6744 TCGA-49-6745 
        8.81        29.46         5.16        55.89        29.26        17.13 
TCGA-49-6761 TCGA-50-5051 TCGA-50-5068 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       11.64        14.96        49.28        35.87        77.88        21.47 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6594 TCGA-53-7624 
       18.64        29.00        22.55        42.31        12.16        34.26 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 
       30.54        13.94        48.62         0.07        32.61        42.48 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6981 TCGA-55-6983 TCGA-55-6985 TCGA-55-7283 
        0.92        48.49        45.34        60.03        40.54         1.12 
TCGA-55-7576 TCGA-55-7725 TCGA-55-7815 TCGA-55-7903 TCGA-55-7911 TCGA-55-7914 
        1.32         1.28         1.78         0.62         0.69         0.10 
TCGA-55-7994 TCGA-55-8085 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8094 
        1.02         1.08         3.02         0.20         1.41         0.13 
TCGA-55-8207 TCGA-55-8302 TCGA-55-8506 TCGA-55-8512 TCGA-55-8615 TCGA-55-8616 
        2.17         0.72         0.36         0.10         0.49         1.58 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A494 TCGA-62-8395 TCGA-62-8398 TCGA-62-8402 
        1.08         1.02         0.16        39.95        14.60        47.47 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A46V TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 
       56.68        54.35        72.30        39.22        29.92        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 
       20.65        39.09        87.98        28.41        51.25        28.44 
TCGA-67-3771 TCGA-67-6216 TCGA-69-7760 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
       20.02         4.60         6.64         7.56         6.05         2.30 
TCGA-69-8253 TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4675 
        3.25         7.04        52.57        23.38        26.27         1.32 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 
       20.42        17.06         5.65        35.93        39.48        24.99 
TCGA-78-7154 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7162 TCGA-78-7535 
       19.50        32.09         5.88        40.11       104.15        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8655 
        8.02        53.33        28.96        10.55        32.68        77.59 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       27.06        12.36         0.36        13.87        19.43        16.70 
TCGA-86-8054 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8672 
       24.49        15.85         0.53         0.62         0.85         0.49 
TCGA-86-8674 TCGA-86-A456 TCGA-91-6831 TCGA-91-7771 TCGA-91-A4BD TCGA-93-7347 
       13.28         0.33        10.16        16.18         7.17         9.76 
TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-97-7547 TCGA-97-7554 
        4.18         0.07         5.36         4.34        64.60        25.48 
TCGA-97-7937 TCGA-97-7938 TCGA-97-8174 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        5.95         0.59         5.36         6.48         8.91        12.89 
TCGA-J2-8192 TCGA-J2-8194 TCGA-L4-A4E5 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        5.03         3.72         6.97         3.81         0.20         9.37 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T6 TCGA-MP-A4TC 
       11.61        86.14        49.35        37.35        58.85         2.43 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TK TCGA-MP-A5C7 
       29.42        11.05        19.13        48.99 

$`6Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
       50.07        14.01         9.96        24.03        47.05         8.02 
TCGA-05-4403 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
       19.00        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        26.01        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 
        4.96        28.96         2.04         7.36         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-7271 
      120.79        37.71        49.02        28.37        35.28        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 TCGA-44-2665 TCGA-44-3396 
        4.37        43.50        13.15        24.36        42.77        37.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 
       38.24         6.21        23.74        33.30        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 TCGA-44-6778 TCGA-44-7660 
       10.78         9.93        11.90        63.72        36.49        10.68 
TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
       12.03         7.17        18.31        18.87        29.00        17.59 
TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G 
       23.64         3.22        15.95        15.32         9.44         4.44 
TCGA-44-A4SS TCGA-49-4487 TCGA-49-4490 TCGA-49-4501 TCGA-49-4506 TCGA-49-6742 
        3.75        28.11        12.66        46.72        32.84        15.02 
TCGA-49-6743 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
       12.13        20.48        71.47        70.55        25.81        31.04 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
        8.05         9.27         8.78         8.45        15.12        25.12 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
        3.88        25.51        11.05         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
        8.38         9.21        23.05        38.73        45.17         2.86 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
        0.79        40.70        15.25         3.88         5.46         7.76 
TCGA-55-6980 TCGA-55-6982 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
        2.20        32.71        24.99        71.05        38.47         0.59 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 
        0.13         3.12         1.02         1.02         0.79         0.53 
TCGA-55-7910 TCGA-55-7995 TCGA-55-8087 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 
        6.48         0.16         0.69         0.85         1.55         0.49 
TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 
        1.51         7.07         1.41         0.95         7.46         0.30 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48Z 
        4.80         6.97         1.61         2.14         3.45         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 
        1.58         0.03         0.92         1.55         5.29         4.54 
TCGA-62-8397 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46U TCGA-62-A471 
       42.38        77.10        47.77        19.53        67.96        40.93 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-67-3770 
       55.40        37.02        38.33         2.04        42.90         0.99 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 TCGA-69-7761 
       18.84        14.04        12.66         5.69        13.87         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 
       22.68        13.61         5.42         2.93        12.56         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 
        4.21         2.01        29.95        15.35         4.27         5.39 
TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 
        1.25       163.10        27.16        19.27        20.58        21.86 
TCGA-78-7155 TCGA-78-7160 TCGA-78-7161 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       38.50        22.29         7.04       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7539 TCGA-78-8640 TCGA-78-8648 TCGA-78-8660 TCGA-78-8662 
       26.53        10.75       208.60        39.72        10.55       110.50 
TCGA-86-7711 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       20.71         0.33         0.43         0.79        15.75        10.92 
TCGA-86-8278 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8673 
       15.65         1.12         1.45         1.08         0.56        14.93 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.99         0.43         1.28        10.62        41.33         1.97 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        2.60        13.71        12.23        27.68         7.36         1.15 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-93-8067 TCGA-95-7039 
        6.44         5.69         1.18         1.45         6.08         1.12 
TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32         4.04        31.66        63.52        43.76 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         2.83         4.80         0.49 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-A4AD TCGA-J2-A4AE 
       14.04        15.06         1.45         5.56         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-MN-A4N4 TCGA-MP-A4SW TCGA-MP-A4T4 TCGA-MP-A4T7 
        7.82         2.50        20.42        58.45        86.04         5.49 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TH TCGA-MP-A4TI 
        5.29        41.59        31.20        10.09         4.67        14.10 
TCGA-MP-A4TJ 
       11.15 

  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
             0.07              0.03 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           104.15            223.96 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
           15.405            11.050 
[1] "0.1 - 104.2 (15.4)" "0.0 - 224.0 (11.1)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
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  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
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"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "6Q LOSS MUTATED"   "6Q LOSS MUTATED" "6Q LOSS WILD-TYPE" "6Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"6Q LOSS WILD-TYPE"   "6Q LOSS MUTATED"   "6Q LOSS MUTATED" 
[1] "hr=" "1"  
D52V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  6Q LOSS MUTATED         1       43       58        19        24         33
  6Q LOSS WILD-TYPE       2       70       73        25        41         32
                   vv
clus                STAGE IIIB STAGE IV
  6Q LOSS MUTATED            6        9
  6Q LOSS WILD-TYPE          5       13
D52V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  6Q LOSS MUTATED    57 107  20   8
  6Q LOSS WILD-TYPE  84 148  19  10
D52V4, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  T1              57                84
  T2             107               148
  T3              20                19
  T4               8                10
                   vv
clus                 N0  N1 N2+N3
  6Q LOSS MUTATED   121  34    34
  6Q LOSS WILD-TYPE 169  51    36
D52V5, multiclass
       clus
vv      6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  N0                121               169
  N1                 34                51
  N2+N3              34                36
                   vv
clus                 M0  M1 M1A M1B  MX
  6Q LOSS MUTATED   132   8   0   2  49
  6Q LOSS WILD-TYPE 182  10   1   1  66
D52V6, multiclass
D52V7, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    98  95
  6Q LOSS WILD-TYPE 146 116
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     98   95
  6Q LOSS WILD-TYPE  146  116
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  FEMALE              98               146
  MALE                95               116
D52V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  6Q LOSS MUTATED                            5
  6Q LOSS WILD-TYPE                          8
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  6Q LOSS MUTATED                                  43
  6Q LOSS WILD-TYPE                                49
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  6Q LOSS MUTATED                                                  122
  6Q LOSS WILD-TYPE                                                170
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  6Q LOSS MUTATED                                            2
  6Q LOSS WILD-TYPE                                          2
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  6Q LOSS MUTATED                                               7
  6Q LOSS WILD-TYPE                                            10
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  6Q LOSS MUTATED                                1
  6Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  6Q LOSS MUTATED                                    1
  6Q LOSS WILD-TYPE                                  2
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  6Q LOSS MUTATED                              0                             9
  6Q LOSS WILD-TYPE                            2                             9
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  6Q LOSS MUTATED                                 0
  6Q LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  6Q LOSS MUTATED                                               1
  6Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  6Q LOSS MUTATED                              2
  6Q LOSS WILD-TYPE                            5
D52V9, multiclass
D52V10, binary
                   cls
clus                  0   1
  6Q LOSS MUTATED    10 183
  6Q LOSS WILD-TYPE  11 251
[1] "tbl2"
                   cls
clus                [,1] [,2]
  6Q LOSS MUTATED     10  183
  6Q LOSS WILD-TYPE   11  251
     clus
vv    6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  NO               10                11
  YES             183               251
D52V11, continuous
D52V12, continuous
                   vv
clus                 R0  R1  R2  RX
  6Q LOSS MUTATED   140   4   1   7
  6Q LOSS WILD-TYPE 172   6   3  11
D52V13, multiclass
    clus
vv   6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  R0             140               172
  R1               4                 6
  R2               1                 3
  RX               7                11

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
D53V1, survival
                   sevent
clus2                 0   1
  7P LOSS MUTATED    22   6
  7P LOSS WILD-TYPE 279 112
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               28               391 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
                6               112 
$`7P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4427 TCGA-38-4630 TCGA-44-5643 TCGA-44-6145 TCGA-44-7670 
       50.07        26.01        35.28        33.30        10.78        29.00 
TCGA-44-8119 TCGA-44-A47B TCGA-49-6742 TCGA-50-5931 TCGA-53-7813 TCGA-55-1594 
        3.22         9.44        15.02         8.78        13.94        38.73 
TCGA-62-A471 TCGA-67-3770 TCGA-67-3774 TCGA-69-7763 TCGA-73-4659 TCGA-78-7167 
       40.93         0.99        12.66        22.68        23.38        88.11 
TCGA-78-7220 TCGA-86-8278 TCGA-86-A4D0 TCGA-91-6828 TCGA-91-6840 TCGA-91-7771 
       26.53        15.65         0.99        10.62        12.23        16.18 
TCGA-91-8499 TCGA-93-8067 TCGA-95-7039 TCGA-97-8174 
        1.18         6.08         1.12         5.36 

$`7P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
        3.98        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
        4.96        28.96        22.03         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        7.36         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       49.02        28.37        11.64        44.61        14.73        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 
        4.37        43.50        46.98        13.15        44.94        24.36 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       42.08        42.77         3.19         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
       34.06         6.21        23.74        28.37        12.59        23.77 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 
        9.93        27.78        11.90        21.63        23.18        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       32.45        36.49        16.41        14.60        10.68        12.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
        7.17        18.31        18.87        17.59        23.64        12.66 
TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        8.55        15.95        15.32        11.08         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 
        2.50        76.21        28.11        28.57        12.66        35.54 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 
       46.72        14.07        32.84         8.81        29.46         5.16 
TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       55.89        12.13        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27        35.87        77.88        21.47         8.45 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 
       15.12        18.64        29.00        25.12        22.55        42.31 
TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 
        3.88        25.51        11.05        12.16         6.21        33.37 
TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1592 
        0.72         8.38        34.26        30.54         9.21        23.05 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        0.13         3.12         1.32         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 
        0.10         1.02         0.16         1.08         0.69         3.02 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 
        0.20         1.41         0.85         0.13         1.55         0.49 
TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 
        1.51         2.17         7.07         1.41         0.72         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 
        0.36         7.46         0.30         0.10         4.80         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        0.49         1.58         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        1.55         5.29         4.54        39.95        42.38        14.60 
TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       77.10        47.47        47.77        19.53        56.68        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       67.96        72.30        39.22        29.92        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        38.33        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 
       42.90        28.41        51.25        28.44        20.02        18.84 
TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       14.04         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         5.42         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 
       12.56         3.25         2.50         4.21         7.04         2.01 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 
       52.57        29.95        26.27        15.35         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        5.39         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
        5.65        19.27        20.58        35.93        21.86        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7535 
       22.29         7.04       104.15       223.96         8.48        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
      208.60        39.72        77.59        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       12.36         0.36        20.71        13.87        19.43        16.70 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       24.49         0.33         0.43         0.79        15.75        10.92 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       15.85         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.08         0.56         0.49        14.93        13.28         0.33 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 
        0.43         1.28        41.33         1.97        10.16         2.60 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 
       13.71        27.68         7.36         1.15         6.44         5.69 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 
        1.45         7.17         9.76         4.18         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 
        0.69         1.32         4.34         4.04        31.66        64.60 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       63.52        43.76        25.48         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        3.48         5.95         2.83         4.80         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        8.91        12.89        14.04        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 
        5.03         3.72         9.44         9.27         7.82         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 
        2.50         3.81         0.20         9.37        20.42        11.61 
TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 
       86.14        58.45        49.35        37.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD 
        5.49         5.29        41.59        31.20         2.43        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       29.42        11.05         4.67        14.10        11.15        19.13 
TCGA-MP-A5C7 
       48.99 

  7P LOSS MUTATED 7P LOSS WILD-TYPE 
             0.99              0.03 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            88.11            223.96 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
            14.48             12.59 
[1] "1.0 - 88.1 (14.5)"  "0.0 - 224.0 (12.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED"   "7P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE"   "7P LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7P LOSS WILD-TYPE"   "7P LOSS MUTATED" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" "7P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D53V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  7P LOSS MUTATED         0        7        7         4         6          4
  7P LOSS WILD-TYPE       3      106      124        40        59         61
                   vv
clus                STAGE IIIB STAGE IV
  7P LOSS MUTATED            1        1
  7P LOSS WILD-TYPE         10       21
D53V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7P LOSS MUTATED     8  18   3   1
  7P LOSS WILD-TYPE 133 237  36  17
D53V4, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  T1               8               133
  T2              18               237
  T3               3                36
  T4               1                17
                   vv
clus                 N0  N1 N2+N3
  7P LOSS MUTATED    21   5     4
  7P LOSS WILD-TYPE 269  80    66
D53V5, multiclass
       clus
vv      7P LOSS MUTATED 7P LOSS WILD-TYPE
  N0                 21               269
  N1                  5                80
  N2+N3               4                66
                   vv
clus                 M0  M1 M1A M1B  MX
  7P LOSS MUTATED    24   1   0   0   5
  7P LOSS WILD-TYPE 290  17   1   3 110
D53V6, multiclass
D53V7, binary
                   cls
clus                  0   1
  7P LOSS MUTATED    13  17
  7P LOSS WILD-TYPE 231 194
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED     13   17
  7P LOSS WILD-TYPE  231  194
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  FEMALE              13               231
  MALE                17               194
D53V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7P LOSS MUTATED                            0
  7P LOSS WILD-TYPE                         13
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7P LOSS MUTATED                                   4
  7P LOSS WILD-TYPE                                88
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7P LOSS MUTATED                                                   21
  7P LOSS WILD-TYPE                                                271
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7P LOSS MUTATED                                            0
  7P LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7P LOSS MUTATED                                               1
  7P LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7P LOSS MUTATED                                0
  7P LOSS WILD-TYPE                              2
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7P LOSS MUTATED                                    0
  7P LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7P LOSS MUTATED                              0                             3
  7P LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  7P LOSS MUTATED                                 0
  7P LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7P LOSS MUTATED                                               0
  7P LOSS WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7P LOSS MUTATED                              1
  7P LOSS WILD-TYPE                            6
D53V9, multiclass
D53V10, binary
                   cls
clus                  0   1
  7P LOSS MUTATED     2  28
  7P LOSS WILD-TYPE  19 406
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7P LOSS MUTATED      2   28
  7P LOSS WILD-TYPE   19  406
     clus
vv    7P LOSS MUTATED 7P LOSS WILD-TYPE
  NO                2                19
  YES              28               406
D53V11, continuous
D53V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7P LOSS MUTATED    17   1   0   2
  7P LOSS WILD-TYPE 295   9   4  16
D53V13, multiclass
    clus
vv   7P LOSS MUTATED 7P LOSS WILD-TYPE
  R0              17               295
  R1               1                 9
  R2               0                 4
  RX               2                16

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
D54V1, survival
                   sevent
clus2                 0   1
  7Q LOSS MUTATED    26   5
  7Q LOSS WILD-TYPE 275 113
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               31               388 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
                5               113 
$`7Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4389 TCGA-05-4417 TCGA-05-4427 TCGA-38-4630 TCGA-44-5643 
       50.07        45.01        14.93        26.01        35.28        33.30 
TCGA-44-7670 TCGA-44-8119 TCGA-44-A47B TCGA-49-6742 TCGA-50-5931 TCGA-50-6673 
       29.00         3.22         9.44        15.02         8.78         0.72 
TCGA-53-7813 TCGA-55-1594 TCGA-55-1595 TCGA-55-6982 TCGA-55-7727 TCGA-55-A4DG 
       13.94        38.73        48.62        32.71         1.02         5.29 
TCGA-62-8402 TCGA-67-3770 TCGA-67-3771 TCGA-67-3774 TCGA-86-8278 TCGA-91-6828 
       47.47         0.99        20.02        12.66        15.65        10.62 
TCGA-91-6840 TCGA-91-7771 TCGA-93-8067 TCGA-95-7039 TCGA-97-8174 TCGA-97-A4M7 
       12.23        16.18         6.08         1.12         5.36         8.91 
TCGA-99-8032 
        1.45 

$`7Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        19.92        14.01        37.02         9.96        24.03 
TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 
       47.05         8.02        19.00        20.05         2.96         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        28.37        12.59        23.77        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8120 
       18.31        18.87        17.59        23.64        12.66         8.55 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.95        15.32        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 
       76.21        28.11        28.57        12.66        35.54        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 
       14.07        32.84         8.81        29.46         5.16        55.89 
TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 
       12.13        29.26        17.13        11.64        20.48        71.47 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 
       70.55        14.96        25.81        31.04        49.28         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        9.27        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 
       25.51        11.05        12.16         6.21        33.37         8.38 
TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 
       34.26        30.54         9.21        23.05        45.17         2.86 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
        0.92        48.49         3.88         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       45.34        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.69         0.10         1.02         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 
        3.02         0.20         1.41         0.85         0.13         1.55 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        0.49         1.51         2.17         7.07         1.41         0.72 
TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        0.95         0.36         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        6.97         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        0.16         1.55         4.54        39.95        42.38        14.60 
TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U 
       77.10        47.77        19.53        56.68        54.35        67.96 
TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       72.30        39.22        40.93        29.92        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        38.33        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 
       42.90        28.41        51.25        28.44        18.84        14.04 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        5.69         4.60        13.87         6.64         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
       13.61         5.42         7.56         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 
       12.56         3.25         2.50         4.21         7.04         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
       52.57        23.38        29.95        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 
        1.32         5.39         1.25        20.42        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
       27.16         5.65        19.27        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 
       28.96        10.55        32.68       208.60        39.72        77.59 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 
       10.55       110.50        27.06        12.36         0.36        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
       13.87        19.43        16.70        24.49         0.33         0.43 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        0.79        15.75        10.92        15.85         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         1.97        10.16         2.60        13.71        27.68 
TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC 
        7.36         1.15         6.44         5.69         1.18         1.45 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        7.17         9.76         4.18         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 
        5.95         2.83         4.80         0.49         6.48        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD 
       14.04        15.06         5.56         5.03         3.72         9.44 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        9.27         7.82         6.97         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY 
        9.37        20.42        11.61        86.14        58.45        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 
       37.35        86.04        58.85         5.49         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
       31.20         2.43        10.09        29.42        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        11.15        19.13        48.99 

  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
             0.72              0.03 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
            50.07            223.96 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
           13.940            12.625 
[1] "0.7 - 50.1 (13.9)"  "0.0 - 224.0 (12.6)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE"   "7Q LOSS MUTATED" "7Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" "7Q LOSS WILD-TYPE" 
[1] "hr=" "1.6"
D54V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  7Q LOSS MUTATED         0       11        9         3         6          5
  7Q LOSS WILD-TYPE       3      102      122        41        59         60
                   vv
clus                STAGE IIIB STAGE IV
  7Q LOSS MUTATED            1        0
  7Q LOSS WILD-TYPE         10       22
D54V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  7Q LOSS MUTATED    13  18   3   1
  7Q LOSS WILD-TYPE 128 237  36  17
D54V4, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  T1              13               128
  T2              18               237
  T3               3                36
  T4               1                17
                   vv
clus                 N0  N1 N2+N3
  7Q LOSS MUTATED    25   5     5
  7Q LOSS WILD-TYPE 265  80    65
D54V5, multiclass
       clus
vv      7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  N0                 25               265
  N1                  5                80
  N2+N3               5                65
                   vv
clus                 M0  M1 M1A M1B  MX
  7Q LOSS MUTATED    29   0   0   0   6
  7Q LOSS WILD-TYPE 285  18   1   3 109
D54V6, multiclass
D54V7, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED    18  17
  7Q LOSS WILD-TYPE 226 194
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED     18   17
  7Q LOSS WILD-TYPE  226  194
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  FEMALE              18               226
  MALE                17               194
D54V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  7Q LOSS MUTATED                            0
  7Q LOSS WILD-TYPE                         13
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  7Q LOSS MUTATED                                   6
  7Q LOSS WILD-TYPE                                86
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  7Q LOSS MUTATED                                                   24
  7Q LOSS WILD-TYPE                                                268
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  7Q LOSS MUTATED                                            0
  7Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  7Q LOSS MUTATED                                               1
  7Q LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  7Q LOSS MUTATED                                1
  7Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  7Q LOSS MUTATED                                    0
  7Q LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  7Q LOSS MUTATED                              0                             2
  7Q LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  7Q LOSS MUTATED                                 0
  7Q LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  7Q LOSS MUTATED                                               0
  7Q LOSS WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  7Q LOSS MUTATED                              1
  7Q LOSS WILD-TYPE                            6
D54V9, multiclass
D54V10, binary
                   cls
clus                  0   1
  7Q LOSS MUTATED     1  34
  7Q LOSS WILD-TYPE  20 400
[1] "tbl2"
                   cls
clus                [,1] [,2]
  7Q LOSS MUTATED      1   34
  7Q LOSS WILD-TYPE   20  400
     clus
vv    7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  NO                1                20
  YES              34               400
D54V11, continuous
D54V12, continuous
                   vv
clus                 R0  R1  R2  RX
  7Q LOSS MUTATED    23   1   0   2
  7Q LOSS WILD-TYPE 289   9   4  16
D54V13, multiclass
    clus
vv   7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  R0              23               289
  R1               1                 9
  R2               0                 4
  RX               2                16

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
D55V1, survival
                   sevent
clus2                 0   1
  8P LOSS MUTATED   116  44
  8P LOSS WILD-TYPE 185  74
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              160               259 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
               44                74 
$`8P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4420 
       50.07        45.01        37.02        47.05         8.02        29.95 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4427 TCGA-05-4433 TCGA-05-5425 TCGA-35-4122 
       12.00        21.99        26.01        24.00        28.96         7.36 
TCGA-35-4123 TCGA-38-4628 TCGA-38-4631 TCGA-44-2657 TCGA-44-2662 TCGA-44-2668 
        5.95        49.02        11.64        13.15        42.08         8.09 
TCGA-44-3918 TCGA-44-3919 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
       34.06         6.21        33.30        28.37        23.77        10.78 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6777 TCGA-44-7660 TCGA-44-7662 TCGA-44-7670 
       21.63        23.18        32.45        10.68         7.17        29.00 
TCGA-44-8117 TCGA-44-A479 TCGA-44-A4SU TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
       12.66        15.95         2.50        28.11        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4510 TCGA-49-6743 TCGA-49-6744 TCGA-49-6761 
       46.72        14.07        29.46        12.13        29.26        11.64 
TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 TCGA-50-5931 TCGA-50-5932 TCGA-50-5939 
       70.55        31.04        49.28         8.78        35.87        15.12 
TCGA-50-5941 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 
       18.64         3.88        11.05        12.16        33.37         0.72 
TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 
       34.26        30.54         9.21        38.73        48.62         2.86 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 TCGA-55-7283 
        7.76         2.20        45.34        32.71        40.54         1.12 
TCGA-55-7573 TCGA-55-7576 TCGA-55-7726 TCGA-55-7727 TCGA-55-7903 TCGA-55-7914 
        0.13         1.32         1.02         1.02         0.62         0.10 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8092 TCGA-55-8097 TCGA-55-8207 TCGA-55-8302 
        1.02         0.16         0.85         0.49         2.17         0.72 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8616 TCGA-55-A493 TCGA-55-A4DG TCGA-62-8394 
        0.36         7.46         1.58         0.92         5.29         4.54 
TCGA-62-8395 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46U TCGA-64-1676 TCGA-64-1678 
       39.95        47.47        47.77        67.96        56.81        39.09 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5815 TCGA-67-3770 
       55.40        38.33         2.04        42.90        28.44         0.99 
TCGA-67-3771 TCGA-67-3772 TCGA-67-6217 TCGA-69-7760 TCGA-69-7978 TCGA-69-7979 
       20.02        18.84        13.87         6.64         2.30         2.93 
TCGA-69-7980 TCGA-69-8255 TCGA-73-4662 TCGA-73-4668 TCGA-73-7498 TCGA-73-7499 
       12.56         4.21        29.95        15.35        20.42        17.06 
TCGA-78-7150 TCGA-78-7152 TCGA-78-7155 TCGA-78-7536 TCGA-78-7542 TCGA-78-8640 
       21.86        39.48        38.50         8.02        10.55       208.60 
TCGA-78-8660 TCGA-78-8662 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 
       10.55       110.50        13.87        19.43        24.49         0.33 
TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8359 TCGA-86-8668 TCGA-86-A456 
        0.79        15.75        15.85         0.85         1.45         0.33 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-91-6836 TCGA-91-6847 TCGA-91-8499 TCGA-91-A4BD 
        0.99         0.43        13.71        27.68         1.18         7.17 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK 
        6.08         1.12         0.07         0.69         1.32         4.04 
TCGA-97-7546 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-8171 TCGA-97-A4M7 
       31.66        25.48         5.95         0.59         3.48         8.91 
TCGA-99-7458 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 
       12.89         1.45         5.03         3.72         9.27         6.97 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T4 TCGA-MP-A4T7 
       20.42        11.61        86.14        58.45        86.04         5.49 
TCGA-MP-A4T9 TCGA-MP-A4TC TCGA-MP-A4TJ TCGA-MP-A4TK 
       41.59         2.43        11.15        19.13 

$`8P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 
        3.98        19.92        14.01         9.96        24.03        19.00 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 
       20.05         2.96        14.93         8.98        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5428 
       25.02        25.02        15.02        15.02         4.96        22.03 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 
        0.99         2.04         0.46         8.68        97.74       120.79 
TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
       37.71        28.37        35.28        44.61        14.73        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
        4.37        43.50        46.98        44.94        24.36        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-5645 TCGA-44-6146 
        3.19        37.15        38.24        23.74        12.59         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
       27.78        11.90        63.72        36.49        16.41        14.60 
TCGA-44-7661 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 TCGA-44-7672 TCGA-44-8119 
       12.03        18.31        18.87        17.59        23.64         3.22 
TCGA-44-8120 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
        8.55        15.32         9.44        11.08         4.44         3.75 
TCGA-49-4486 TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 
       76.21        35.54        32.84         8.81         5.16        55.89 
TCGA-49-6742 TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       15.02        17.13        20.48        71.47        14.96        25.81 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 
        8.05         9.27        77.88        21.47         8.45        29.00 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6595 TCGA-50-7109 
       25.12        22.55        42.31        25.51         6.21         8.38 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       13.94        23.05        45.17         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
        5.46        60.03        24.99        71.05        38.47         0.59 
TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 
        3.12         1.28         0.79         1.78         0.53         6.48 
TCGA-55-7911 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 
        0.69         1.08         0.69         3.02         0.20         1.41 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 
        0.13         1.55         1.51         7.07         1.41         0.95 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 
        0.30         0.10         4.80         6.97         0.49         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 
        2.14         3.45         1.08         1.02         0.95         1.58 
TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 
        0.03         0.16         1.55        42.38        14.60        77.10 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 
       19.53        56.68        54.35        72.30        39.22        40.93 
TCGA-62-A472 TCGA-64-1677 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-64-5781 
       29.92        20.65        37.02        87.98        28.41        51.25 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7761 TCGA-69-7763 
       14.04        12.66         5.69         4.60         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-8253 TCGA-69-8254 
       13.61         5.42         7.56         6.05         3.25         2.50 
TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 
        7.04         2.01        52.57        23.38        26.27         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.32         5.39         1.25       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       19.27        20.58        35.93        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53        31.20        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 TCGA-83-5908 TCGA-86-6562 
       28.96        32.68        39.72        77.59        27.06        12.36 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7955 TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 
        0.36        20.71        16.70         0.43        10.92        15.65 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.53         0.62         1.12         1.08         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
       14.93        13.28         1.28        10.62        41.33         1.97 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
       10.16         2.60        12.23         7.36         1.15        16.18 
TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-93-7347 TCGA-93-7348 TCGA-95-7567 
        6.44         5.69         1.45         9.76         4.18         5.36 
TCGA-95-7948 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7941 TCGA-97-8172 
        4.34        64.60        63.52        43.76         0.72         5.95 
TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-8025 
        5.36         2.83         4.80         0.49         6.48        14.04 
TCGA-99-8028 TCGA-99-8033 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 
       15.06         5.56         9.44         7.82         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T6 TCGA-MP-A4T8 
        0.20         9.37        49.35        37.35        58.85         5.29 
TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI 
       31.20        10.09        29.42        11.05         4.67        14.10 
TCGA-MP-A5C7 
       48.99 

  8P LOSS MUTATED 8P LOSS WILD-TYPE 
             0.07              0.03 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
           208.60            223.96 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
            12.66             12.66 
[1] "0.1 - 208.6 (12.7)" "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
  "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED"   "8P LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "8P LOSS MUTATED" "8P LOSS WILD-TYPE"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" "8P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "8P LOSS MUTATED"   "8P LOSS MUTATED" "8P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D55V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  8P LOSS MUTATED         2       45       50        18        27         24
  8P LOSS WILD-TYPE       1       68       81        26        38         41
                   vv
clus                STAGE IIIB STAGE IV
  8P LOSS MUTATED            3        7
  8P LOSS WILD-TYPE          8       15
D55V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8P LOSS MUTATED    60  97  13   5
  8P LOSS WILD-TYPE  81 158  26  13
D55V4, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  T1              60                81
  T2              97               158
  T3              13                26
  T4               5                13
                   vv
clus                 N0  N1 N2+N3
  8P LOSS MUTATED   112  34    27
  8P LOSS WILD-TYPE 178  51    43
D55V5, multiclass
       clus
vv      8P LOSS MUTATED 8P LOSS WILD-TYPE
  N0                112               178
  N1                 34                51
  N2+N3              27                43
                   vv
clus                 M0  M1 M1A M1B  MX
  8P LOSS MUTATED   121   6   1   0  47
  8P LOSS WILD-TYPE 193  12   0   3  68
D55V6, multiclass
D55V7, binary
                   cls
clus                  0   1
  8P LOSS MUTATED   104  72
  8P LOSS WILD-TYPE 140 139
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED    104   72
  8P LOSS WILD-TYPE  140  139
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  FEMALE             104               140
  MALE                72               139
D55V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8P LOSS MUTATED                            6
  8P LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8P LOSS MUTATED                                  31
  8P LOSS WILD-TYPE                                61
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8P LOSS MUTATED                                                  120
  8P LOSS WILD-TYPE                                                172
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8P LOSS MUTATED                                            1
  8P LOSS WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8P LOSS MUTATED                                               7
  8P LOSS WILD-TYPE                                            10
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8P LOSS MUTATED                                2
  8P LOSS WILD-TYPE                              0
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8P LOSS MUTATED                                    3
  8P LOSS WILD-TYPE                                  0
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8P LOSS MUTATED                              0                             3
  8P LOSS WILD-TYPE                            2                            15
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  8P LOSS MUTATED                                 1
  8P LOSS WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8P LOSS MUTATED                                               2
  8P LOSS WILD-TYPE                                             2
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8P LOSS MUTATED                              0
  8P LOSS WILD-TYPE                            7
D55V9, multiclass
D55V10, binary
                   cls
clus                  0   1
  8P LOSS MUTATED     5 171
  8P LOSS WILD-TYPE  16 263
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8P LOSS MUTATED      5  171
  8P LOSS WILD-TYPE   16  263
     clus
vv    8P LOSS MUTATED 8P LOSS WILD-TYPE
  NO                5                16
  YES             171               263
D55V11, continuous
D55V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8P LOSS MUTATED   124   1   1   9
  8P LOSS WILD-TYPE 188   9   3   9
D55V13, multiclass
    clus
vv   8P LOSS MUTATED 8P LOSS WILD-TYPE
  R0             124               188
  R1               1                 9
  R2               1                 3
  RX               9                 9

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
D56V1, survival
                   sevent
clus2                 0   1
  8Q LOSS MUTATED    32  12
  8Q LOSS WILD-TYPE 269 106
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               44               375 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               12               106 
$`8Q LOSS MUTATED`
TCGA-05-4415 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 TCGA-44-2657 TCGA-44-6145 
        2.96        29.95        12.00        21.99        13.15        10.78 
TCGA-44-6775 TCGA-44-7660 TCGA-49-4487 TCGA-49-4490 TCGA-49-4501 TCGA-49-6743 
       23.18        10.68        28.11        12.66        46.72        12.13 
TCGA-49-6744 TCGA-50-5049 TCGA-50-5068 TCGA-50-6594 TCGA-50-6597 TCGA-53-7626 
       29.26        70.55        49.28        12.16        33.37        30.54 
TCGA-55-7573 TCGA-55-7727 TCGA-55-7903 TCGA-55-8506 TCGA-62-8394 TCGA-64-1676 
        0.13         1.02         0.62         0.36         4.54        56.81 
TCGA-64-1679 TCGA-67-6217 TCGA-69-7980 TCGA-73-4662 TCGA-73-4668 TCGA-73-7498 
       55.40        13.87        12.56        29.95        15.35        20.42 
TCGA-78-7150 TCGA-78-8640 TCGA-86-8055 TCGA-86-8074 TCGA-86-8279 TCGA-95-7039 
       21.86       208.60         0.33         0.79        15.85         1.12 
TCGA-95-7944 TCGA-97-7546 TCGA-97-7554 TCGA-97-8171 TCGA-97-A4M7 TCGA-MN-A4N4 
        0.69        31.66        25.48         3.48         8.91        20.42 
TCGA-MP-A4T7 TCGA-MP-A4TK 
        5.49        19.13 

$`8Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
       14.93         8.98        30.02        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61        14.73        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       43.50        46.98        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 
       23.74        33.30        28.37        12.59        23.77         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 
       27.78        11.90        21.63        63.72        32.45        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 
       16.41        14.60        12.03         7.17        18.31        18.87 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       29.00        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       15.95        15.32         9.44        11.08         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
        2.50        76.21        28.57        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 
        8.81        29.46         5.16        55.89        15.02        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 
       11.64        20.48        71.47        14.96        25.81        31.04 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
        8.45        15.12        18.64        29.00        25.12        22.55 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 TCGA-50-6595 TCGA-50-6673 
       42.31         3.88        25.51        11.05         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 
        8.38        34.26        13.94         9.21        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 
        0.53         6.48         0.69         0.10         1.02         0.16 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 
        1.08         0.69         3.02         0.20         1.41         0.85 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.13         1.55         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        1.41         0.72         0.95         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        4.80         6.97         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        3.45         1.08         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 TCGA-62-8397 
        0.92         0.16         1.55         5.29        39.95        42.38 
TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R 
       14.60        77.10        47.47        47.77        19.53        56.68 
TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 
       54.35        67.96        72.30        39.22        40.93        29.92 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        37.02        38.33        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       42.90        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 
       18.84        14.04        12.66         5.69         4.60         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.12        22.68        13.61         5.42         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K 
        2.30         2.93         3.25         2.50         4.21         7.04 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 
        2.01        52.57        23.38        26.27         4.27         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        5.39         1.25        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        35.93        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 
      104.15       223.96         8.48        88.11        26.53        31.20 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 
       39.72        77.59        10.55       110.50        27.06        12.36 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 
        0.36        20.71        13.87        19.43        16.70        24.49 
TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 
        0.43        15.75        10.92        15.65         0.53         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 
        0.85         1.12         1.45         1.08         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
       10.62        41.33         1.97        10.16         2.60        13.71 
TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
       12.23        27.68         7.36         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        5.69         1.18         1.45         7.17         9.76         4.18 
TCGA-93-8067 TCGA-95-7043 TCGA-95-7567 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK 
        6.08         0.07         5.36         1.32         4.34         4.04 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       64.60        63.52        43.76         5.95         0.59         0.72 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        5.95         5.36         2.83         4.80         0.49         6.48 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
       12.89        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        3.72         9.44         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW 
        3.81         0.20         9.37        11.61        86.14        58.45 
TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4T9 
       49.35        37.35        86.04        58.85         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
       31.20         2.43        10.09        29.42        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A5C7 
       14.10        11.15        48.99 

  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
             0.13              0.03 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
           208.60            223.96 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
            14.61             12.36 
[1] "0.1 - 208.6 (14.6)" "0.0 - 224.0 (12.4)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED"   "8Q LOSS MUTATED" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"8Q LOSS WILD-TYPE"   "8Q LOSS MUTATED" "8Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D56V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  8Q LOSS MUTATED         1       12        9        10         6          6
  8Q LOSS WILD-TYPE       2      101      122        34        59         59
                   vv
clus                STAGE IIIB STAGE IV
  8Q LOSS MUTATED            2        3
  8Q LOSS WILD-TYPE          9       19
D56V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  8Q LOSS MUTATED    19  23   5   2
  8Q LOSS WILD-TYPE 122 232  34  16
D56V4, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  T1              19               122
  T2              23               232
  T3               5                34
  T4               2                16
                   vv
clus                 N0  N1 N2+N3
  8Q LOSS MUTATED    26  13     9
  8Q LOSS WILD-TYPE 264  72    61
D56V5, multiclass
       clus
vv      8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  N0                 26               264
  N1                 13                72
  N2+N3               9                61
                   vv
clus                 M0  M1 M1A M1B  MX
  8Q LOSS MUTATED    34   2   1   0  12
  8Q LOSS WILD-TYPE 280  16   0   3 103
D56V6, multiclass
D56V7, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED    30  19
  8Q LOSS WILD-TYPE 214 192
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED     30   19
  8Q LOSS WILD-TYPE  214  192
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  FEMALE              30               214
  MALE                19               192
D56V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  8Q LOSS MUTATED                            1
  8Q LOSS WILD-TYPE                         12
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  8Q LOSS MUTATED                                   9
  8Q LOSS WILD-TYPE                                83
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  8Q LOSS MUTATED                                                   32
  8Q LOSS WILD-TYPE                                                260
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  8Q LOSS MUTATED                                            0
  8Q LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  8Q LOSS MUTATED                                               1
  8Q LOSS WILD-TYPE                                            16
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  8Q LOSS MUTATED                                1
  8Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  8Q LOSS MUTATED                                    2
  8Q LOSS WILD-TYPE                                  1
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  8Q LOSS MUTATED                              0                             2
  8Q LOSS WILD-TYPE                            2                            16
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  8Q LOSS MUTATED                                 0
  8Q LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  8Q LOSS MUTATED                                               1
  8Q LOSS WILD-TYPE                                             3
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  8Q LOSS MUTATED                              0
  8Q LOSS WILD-TYPE                            7
D56V9, multiclass
D56V10, binary
                   cls
clus                  0   1
  8Q LOSS MUTATED     1  48
  8Q LOSS WILD-TYPE  20 386
[1] "tbl2"
                   cls
clus                [,1] [,2]
  8Q LOSS MUTATED      1   48
  8Q LOSS WILD-TYPE   20  386
     clus
vv    8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  NO                1                20
  YES              48               386
D56V11, continuous
D56V12, continuous
                   vv
clus                 R0  R1  R2  RX
  8Q LOSS MUTATED    34   1   0   1
  8Q LOSS WILD-TYPE 278   9   4  17
D56V13, multiclass
    clus
vv   8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  R0              34               278
  R1               1                 9
  R2               0                 4
  RX               1                17

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
D57V1, survival
                   sevent
clus2                 0   1
  9P LOSS MUTATED   148  70
  9P LOSS WILD-TYPE 153  48
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              218               201 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
               70                48 
$`9P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4402 
       50.07         3.98        14.01        45.01         9.96         8.02 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4433 
       20.05         2.96         8.98        29.95        30.02        24.00 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-4122 
       15.02         4.96        28.96         0.99         2.04         7.36 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 
       37.71        49.02        35.28        11.64        44.61        14.73 
TCGA-38-A44F TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-5643 
        4.37        13.15        44.94        24.36        42.08        33.30 
TCGA-44-5644 TCGA-44-6144 TCGA-44-6146 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       28.37        23.77         9.93        32.45        36.49        16.41 
TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 
       10.68         7.17        18.31        18.87        29.00        17.59 
TCGA-44-8117 TCGA-44-8120 TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4487 TCGA-49-4490 
       12.66         8.55         3.75         2.50        28.11        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4514 
       35.54        46.72        14.07        32.84        29.46        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       15.02        12.13        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 
        8.78        35.87        77.88        21.47         8.45        15.12 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6673 
       25.12        22.55        25.51        11.05        12.16         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        8.38        34.26        30.54        13.94        23.05        38.73 
TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6971 TCGA-55-6975 
       45.17         2.86        32.61         0.79         0.92         3.88 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6985 TCGA-55-6986 TCGA-55-7281 
        2.20        45.34        32.71        40.54        71.05         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7576 TCGA-55-7726 TCGA-55-7907 TCGA-55-7914 
        1.12         0.13         1.32         1.02         0.53         0.10 
TCGA-55-7994 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 
        1.02         3.02         0.20         1.41         0.85         0.13 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8505 TCGA-55-8510 TCGA-55-8512 
        0.49         1.51         2.17         0.95         7.46         0.10 
TCGA-55-8615 TCGA-55-A48X TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A4DG 
        0.49         1.08         1.58         0.03         0.92         5.29 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O 
       39.95        42.38        14.60        77.10        47.47        47.77 
TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 
       72.30        39.22        40.93        29.92        56.81        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
       55.40        37.02        38.33        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3774 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       18.84        12.66         4.60        13.87         6.64         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7974 TCGA-69-7980 TCGA-69-8255 TCGA-73-4662 
       22.68        13.61         6.05        12.56         4.21        29.95 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
       15.35         4.27         1.32       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7156 TCGA-78-7160 
       19.27        20.58        35.93        21.86        32.09        22.29 
TCGA-78-7161 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7540 TCGA-78-7542 
        7.04         8.48        88.11        26.53        28.96        10.55 
TCGA-78-7633 TCGA-78-8640 TCGA-78-8655 TCGA-78-8660 TCGA-86-7711 TCGA-86-7713 
       32.68       208.60        77.59        10.55        20.71        13.87 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 
       16.70        24.49         0.33         0.79        15.75        15.85 
TCGA-86-8280 TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8672 TCGA-86-A456 
        0.53         0.62         1.12         1.45         0.49         0.33 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 TCGA-91-6847 
       41.33         1.97        10.16         2.60        12.23        27.68 
TCGA-91-6848 TCGA-91-6849 TCGA-91-8499 TCGA-93-7348 TCGA-95-7567 TCGA-95-7948 
        7.36         1.15         1.18         4.18         5.36         4.34 
TCGA-95-A4VK TCGA-97-7937 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M7 
        4.04         5.95         5.36         4.80         0.49         8.91 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-MN-A4N1 
        1.45         5.56         5.03         9.44         7.82         9.37 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T6 
       20.42        11.61        86.14        58.45        49.35        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE 
        5.49         5.29        41.59        31.20        10.09        29.42 
TCGA-MP-A4TF TCGA-MP-A5C7 
       11.05        48.99 

$`9P LOSS WILD-TYPE`
TCGA-05-4382 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4417 
       19.92        37.02        24.03        47.05        19.00        14.93 
TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       12.00        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4434 TCGA-05-5428 TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
       15.02        22.03         0.46         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4629 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 TCGA-44-2665 
      120.79        28.37        26.30        43.50        46.98        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       23.74        12.59        10.78        27.78        11.90        21.63 
TCGA-44-6775 TCGA-44-6776 TCGA-44-7659 TCGA-44-7661 TCGA-44-7672 TCGA-44-8119 
       23.18        63.72        14.60        12.03        23.64         3.22 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-49-4486 
       15.95        15.32         9.44        11.08         4.44        76.21 
TCGA-49-4488 TCGA-49-4507 TCGA-49-4512 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       28.57         8.81         5.16        29.26        17.13        11.64 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 TCGA-50-5941 
       20.48        71.47        70.55        14.96        31.04        18.64 
TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-50-6595 TCGA-50-6597 TCGA-53-A4EZ 
       29.00        42.31         3.88         6.21        33.37         9.21 
TCGA-55-1595 TCGA-55-6543 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 
       48.62         0.07        42.48        40.70        15.25        48.49 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6983 TCGA-55-6984 TCGA-55-6987 TCGA-55-7574 
        5.46         7.76        60.03        24.99        38.47         3.12 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 
        1.28         1.02         0.79         1.78         0.62         6.48 
TCGA-55-7911 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8096 TCGA-55-8299 
        0.69         0.16         1.08         0.69         1.55         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 TCGA-55-8511 TCGA-55-8513 TCGA-55-8514 
        1.41         0.72         0.36         0.30         4.80         6.97 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48Y TCGA-55-A48Z 
        1.58         1.61         2.14         3.45         1.02         0.95 
TCGA-55-A494 TCGA-55-A4DF TCGA-62-8394 TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
        0.16         1.55         4.54        19.53        56.68        54.35 
TCGA-62-A46U TCGA-64-1677 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       67.96        20.65        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-67-3773 TCGA-67-6215 TCGA-69-7765 TCGA-69-7973 TCGA-69-7978 
       51.25        14.04         5.69         5.42         7.56         2.30 
TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 
        2.93         3.25         2.50         7.04         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
       23.38        26.27         5.39         1.25        20.42        17.06 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7158 TCGA-78-7159 
       39.48        24.99        19.50        38.50         5.88        40.11 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
      104.15       223.96        31.20         8.02        53.33        10.75 
TCGA-78-8648 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7953 
       39.72       110.50        27.06        12.36         0.36        19.43 
TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 TCGA-86-8359 TCGA-86-8669 TCGA-86-8671 
        0.43        10.92        15.65         0.85         1.08         0.56 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       14.93        13.28         0.99         0.43         1.28        10.62 
TCGA-91-6836 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD 
       13.71        16.18         6.44         5.69         1.45         7.17 
TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        9.76         6.08         1.12         0.07         0.69         1.32 
TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7938 
       31.66        64.60        63.52        43.76        25.48         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 TCGA-97-A4M2 TCGA-99-7458 
        0.72         3.48         5.95         2.83         6.48        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L4-A4E6 
       14.04        15.06         3.72         9.27         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4TC TCGA-MP-A4TH 
        3.81         0.20        37.35        86.04         2.43         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       14.10        11.15        19.13 

  9P LOSS MUTATED 9P LOSS WILD-TYPE 
             0.03              0.07 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
           208.60            223.96 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
            13.38             12.03 
[1] "0.0 - 208.6 (13.4)" "0.1 - 224.0 (12.0)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9P LOSS WILD-TYPE"   "9P LOSS MUTATED"   "9P LOSS MUTATED"   "9P LOSS MUTATED" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "9P LOSS MUTATED"   "9P LOSS MUTATED" "9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"9P LOSS WILD-TYPE" "9P LOSS WILD-TYPE"   "9P LOSS MUTATED" 
[1] "hr=" "1.4"
D57V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  9P LOSS MUTATED         2       52       62        26        37         37
  9P LOSS WILD-TYPE       1       61       69        18        28         28
                   vv
clus                STAGE IIIB STAGE IV
  9P LOSS MUTATED            6       13
  9P LOSS WILD-TYPE          5        9
D57V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9P LOSS MUTATED    70 133  21  10
  9P LOSS WILD-TYPE  71 122  18   8
D57V4, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  T1              70                71
  T2             133               122
  T3              21                18
  T4              10                 8
                   vv
clus                 N0  N1 N2+N3
  9P LOSS MUTATED   139  53    39
  9P LOSS WILD-TYPE 151  32    31
D57V5, multiclass
       clus
vv      9P LOSS MUTATED 9P LOSS WILD-TYPE
  N0                139               151
  N1                 53                32
  N2+N3              39                31
                   vv
clus                 M0  M1 M1A M1B  MX
  9P LOSS MUTATED   166  11   0   2  54
  9P LOSS WILD-TYPE 148   7   1   1  61
D57V6, multiclass
D57V7, binary
                   cls
clus                  0   1
  9P LOSS MUTATED   116 119
  9P LOSS WILD-TYPE 128  92
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED    116  119
  9P LOSS WILD-TYPE  128   92
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  FEMALE             116               128
  MALE               119                92
D57V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9P LOSS MUTATED                            7
  9P LOSS WILD-TYPE                          6
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9P LOSS MUTATED                                  47
  9P LOSS WILD-TYPE                                45
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9P LOSS MUTATED                                                  154
  9P LOSS WILD-TYPE                                                138
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9P LOSS MUTATED                                            2
  9P LOSS WILD-TYPE                                          2
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9P LOSS MUTATED                                               9
  9P LOSS WILD-TYPE                                             8
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9P LOSS MUTATED                                1
  9P LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9P LOSS MUTATED                                    3
  9P LOSS WILD-TYPE                                  0
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9P LOSS MUTATED                              1                             6
  9P LOSS WILD-TYPE                            1                            12
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  9P LOSS MUTATED                                 0
  9P LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9P LOSS MUTATED                                               3
  9P LOSS WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9P LOSS MUTATED                              2
  9P LOSS WILD-TYPE                            5
D57V9, multiclass
D57V10, binary
                   cls
clus                  0   1
  9P LOSS MUTATED    10 225
  9P LOSS WILD-TYPE  11 209
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9P LOSS MUTATED     10  225
  9P LOSS WILD-TYPE   11  209
     clus
vv    9P LOSS MUTATED 9P LOSS WILD-TYPE
  NO               10                11
  YES             225               209
D57V11, continuous
D57V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9P LOSS MUTATED   161   6   2   9
  9P LOSS WILD-TYPE 151   4   2   9
D57V13, multiclass
    clus
vv   9P LOSS MUTATED 9P LOSS WILD-TYPE
  R0             161               151
  R1               6                 4
  R2               2                 2
  RX               9                 9

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
D58V1, survival
                   sevent
clus2                 0   1
  9Q LOSS MUTATED   141  62
  9Q LOSS WILD-TYPE 160  56
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              203               216 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
               62                56 
$`9Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4389 TCGA-05-4402 TCGA-05-4415 
       50.07         3.98        19.92        45.01         8.02         2.96 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
        8.98        29.95        30.02        25.02        24.00        15.02 
TCGA-05-5425 TCGA-05-5715 TCGA-35-4122 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
       28.96         2.04         7.36         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-A44F 
       49.02        35.28        11.64        44.61        14.73         4.37 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-5644 TCGA-44-6144 
       13.15        44.94        24.36        42.08        28.37        23.77 
TCGA-44-6774 TCGA-44-6777 TCGA-44-6778 TCGA-44-7660 TCGA-44-7662 TCGA-44-7667 
       21.63        32.45        36.49        10.68         7.17        18.31 
TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-8117 TCGA-44-8120 TCGA-44-A4SS 
       18.87        29.00        17.59        12.66         8.55         3.75 
TCGA-44-A4SU TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 
        2.50        28.11        12.66        35.54        46.72        14.07 
TCGA-49-4506 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-50-5055 
       32.84        29.46        55.89        15.02        12.13        25.81 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       49.28         8.05         8.78        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5944 TCGA-50-6593 TCGA-50-6594 TCGA-50-6673 TCGA-50-7109 
        8.45        25.12        11.05        12.16         0.72         8.38 
TCGA-53-7624 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       34.26        13.94        23.05        38.73        45.17         2.86 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6971 TCGA-55-6975 TCGA-55-6980 TCGA-55-6981 
       32.61         0.79         0.92         3.88         2.20        45.34 
TCGA-55-6982 TCGA-55-6985 TCGA-55-6986 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       32.71        40.54        71.05         0.59         1.12         0.13 
TCGA-55-7726 TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8089 
        1.02         0.53         0.69         0.10         1.02         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        0.20         0.85         0.13         0.49         1.51         2.17 
TCGA-55-8505 TCGA-55-8510 TCGA-55-8512 TCGA-55-8514 TCGA-55-8615 TCGA-55-A48X 
        0.95         7.46         0.10         6.97         0.49         1.08 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8397 
        0.03         0.92         0.16         1.55         5.29        42.38 
TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46R TCGA-62-A46V 
       14.60        77.10        47.47        47.77        56.68        72.30 
TCGA-62-A470 TCGA-64-1676 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       39.22        56.81        55.40        37.02        38.33        87.98 
TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6217 
       28.41         0.99        20.02        18.84        12.66        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7973 TCGA-69-7974 TCGA-69-7980 
        6.64         6.12        22.68         7.56         6.05        12.56 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 
        4.21         7.04        23.38        29.95        15.35         4.27 
TCGA-73-4675 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 
        1.32       163.10        27.16         5.65        19.27        20.58 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7159 TCGA-78-7161 TCGA-78-7167 TCGA-78-7220 
       35.93        21.86        40.11         7.04        88.11        26.53 
TCGA-78-7633 TCGA-78-8640 TCGA-78-8660 TCGA-86-7711 TCGA-86-7713 TCGA-86-7955 
       32.68       208.60        10.55        20.71        13.87        16.70 
TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 
        0.33         0.79        15.75        15.85         0.53         0.62 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8672 TCGA-86-A456 TCGA-91-6829 TCGA-91-6830 
        1.12         1.45         0.49         0.33        41.33         1.97 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-8499 
       10.16         2.60        12.23        27.68         7.36         1.18 
TCGA-93-7348 TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7937 
        4.18         1.12         5.36         4.34         4.04         5.95 
TCGA-97-8174 TCGA-97-8177 TCGA-97-A4M7 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        5.36         4.80         8.91         1.45         5.56         5.03 
TCGA-J2-A4AD TCGA-J2-A4AG TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV 
        9.44         7.82         9.37        20.42        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA 
       58.45        49.35        58.85         5.49        41.59        31.20 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TJ TCGA-MP-A5C7 
       10.09        29.42        11.05        11.15        48.99 

$`9Q LOSS WILD-TYPE`
TCGA-05-4384 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 
       14.01        37.02         9.96        24.03        47.05        19.00 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
       20.05        14.93        12.00        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4434 TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 TCGA-35-3615 
       25.02        15.02         4.96        22.03         0.99         0.46 
TCGA-35-4123 TCGA-38-4626 TCGA-38-4629 TCGA-38-7271 TCGA-44-2655 TCGA-44-2656 
        5.95       120.79        28.37        26.30        43.50        46.98 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        34.06 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 
        6.21        23.74        33.30        12.59        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6775 TCGA-44-6776 TCGA-44-6779 TCGA-44-7659 
       27.78        11.90        23.18        63.72        16.41        14.60 
TCGA-44-7661 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       12.03        23.64         3.22        15.95        15.32         9.44 
TCGA-44-A47F TCGA-44-A47G TCGA-49-4486 TCGA-49-4488 TCGA-49-4507 TCGA-49-4512 
       11.08         4.44        76.21        28.57         8.81         5.16 
TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 
       29.26        17.13        11.64        20.48        71.47        70.55 
TCGA-50-5051 TCGA-50-5066 TCGA-50-5930 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       14.96        31.04         9.27        15.12        18.64        29.00 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-6597 
       22.55        42.31         3.88        25.51         6.21        33.37 
TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-6543 TCGA-55-6968 TCGA-55-6969 
       30.54         9.21        48.62         0.07        42.48        40.70 
TCGA-55-6970 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6983 TCGA-55-6984 
       15.25        48.49         5.46         7.76        60.03        24.99 
TCGA-55-6987 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7727 TCGA-55-7728 
       38.47         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7910 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        1.78         0.62         6.48         0.16         1.08         0.69 
TCGA-55-8091 TCGA-55-8096 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 
        1.41         1.55         7.07         1.41         0.72         0.36 
TCGA-55-8511 TCGA-55-8513 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        0.30         4.80         1.58         1.61         2.14         3.45 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-62-8394 TCGA-62-8395 TCGA-62-A46P 
        1.02         0.95         1.58         4.54        39.95        19.53 
TCGA-62-A46S TCGA-62-A46U TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 
       54.35        67.96        40.93        29.92        20.65        39.09 
TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3773 TCGA-67-6215 
        2.04        42.90        51.25        28.44        14.04         5.69 
TCGA-67-6216 TCGA-69-7764 TCGA-69-7765 TCGA-69-7978 TCGA-69-7979 TCGA-69-8253 
        4.60        13.61         5.42         2.30         2.93         3.25 
TCGA-69-8254 TCGA-71-6725 TCGA-73-4658 TCGA-73-4666 TCGA-73-4676 TCGA-73-4677 
        2.50         2.01        52.57        26.27         5.39         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.42        17.06        39.48        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       32.09         5.88        22.29       104.15       223.96         8.48 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 
       31.20         8.02        53.33        10.75        28.96        10.55 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 
       39.72        77.59       110.50        27.06        12.36         0.36 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 TCGA-86-8359 
       19.43        24.49         0.43        10.92        15.65         0.85 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A4D0 TCGA-86-A4P7 
        1.08         0.56        14.93        13.28         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6836 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
        1.28        10.62        13.71         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-8067 TCGA-95-7043 
        5.69         1.45         7.17         9.76         6.08         0.07 
TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        0.69         1.32        31.66        64.60        63.52        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 
       25.48         0.59         0.72         3.48         5.95         2.83 
TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-J2-8194 
        0.49         6.48        12.89        14.04        15.06         3.72 
TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MP-A4T2 
        9.27         6.97         2.50         3.81         0.20        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T8 TCGA-MP-A4TC TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK 
       86.04         5.29         2.43         4.67        14.10        19.13 

  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
             0.03              0.07 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
           208.60            223.96 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
            12.66             12.74 
[1] "0.0 - 208.6 (12.7)" "0.1 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
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"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
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  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
  "9Q LOSS MUTATED"   "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE" "9Q LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
  "9Q LOSS MUTATED" "9Q LOSS WILD-TYPE"   "9Q LOSS MUTATED" 
[1] "hr=" "1.1"
D58V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  9Q LOSS MUTATED         2       53       61        25        30         34
  9Q LOSS WILD-TYPE       1       60       70        19        35         31
                   vv
clus                STAGE IIIB STAGE IV
  9Q LOSS MUTATED            4       12
  9Q LOSS WILD-TYPE          7       10
D58V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  9Q LOSS MUTATED    71 125  19   5
  9Q LOSS WILD-TYPE  70 130  20  13
D58V4, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  T1              71                70
  T2             125               130
  T3              19                20
  T4               5                13
                   vv
clus                 N0  N1 N2+N3
  9Q LOSS MUTATED   134  46    36
  9Q LOSS WILD-TYPE 156  39    34
D58V5, multiclass
       clus
vv      9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  N0                134               156
  N1                 46                39
  N2+N3              36                34
                   vv
clus                 M0  M1 M1A M1B  MX
  9Q LOSS MUTATED   151  10   0   2  56
  9Q LOSS WILD-TYPE 163   8   1   1  59
D58V6, multiclass
D58V7, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED   117 104
  9Q LOSS WILD-TYPE 127 107
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED    117  104
  9Q LOSS WILD-TYPE  127  107
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  FEMALE             117               127
  MALE               104               107
D58V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  9Q LOSS MUTATED                            6
  9Q LOSS WILD-TYPE                          7
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  9Q LOSS MUTATED                                  39
  9Q LOSS WILD-TYPE                                53
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  9Q LOSS MUTATED                                                  149
  9Q LOSS WILD-TYPE                                                143
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  9Q LOSS MUTATED                                            1
  9Q LOSS WILD-TYPE                                          3
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  9Q LOSS MUTATED                                               9
  9Q LOSS WILD-TYPE                                             8
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  9Q LOSS MUTATED                                1
  9Q LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  9Q LOSS MUTATED                                    3
  9Q LOSS WILD-TYPE                                  0
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  9Q LOSS MUTATED                              0                             6
  9Q LOSS WILD-TYPE                            2                            12
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  9Q LOSS MUTATED                                 1
  9Q LOSS WILD-TYPE                               0
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  9Q LOSS MUTATED                                               3
  9Q LOSS WILD-TYPE                                             1
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  9Q LOSS MUTATED                              3
  9Q LOSS WILD-TYPE                            4
D58V9, multiclass
D58V10, binary
                   cls
clus                  0   1
  9Q LOSS MUTATED     9 212
  9Q LOSS WILD-TYPE  12 222
[1] "tbl2"
                   cls
clus                [,1] [,2]
  9Q LOSS MUTATED      9  212
  9Q LOSS WILD-TYPE   12  222
     clus
vv    9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  NO                9                12
  YES             212               222
D58V11, continuous
D58V12, continuous
                   vv
clus                 R0  R1  R2  RX
  9Q LOSS MUTATED   153   6   2   9
  9Q LOSS WILD-TYPE 159   4   2   9
D58V13, multiclass
    clus
vv   9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  R0             153               159
  R1               6                 4
  R2               2                 2
  RX               9                 9

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
D59V1, survival
                    sevent
clus2                  0   1
  10P LOSS MUTATED    59  30
  10P LOSS WILD-TYPE 242  88
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                89                330 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
                30                 88 
$`10P LOSS MUTATED`
TCGA-05-4402 TCGA-05-5429 TCGA-05-5715 TCGA-38-4627 TCGA-38-4628 TCGA-38-4631 
        8.02         0.99         2.04        37.71        49.02        11.64 
TCGA-38-6178 TCGA-44-2657 TCGA-44-2662 TCGA-44-3398 TCGA-44-3919 TCGA-44-6775 
       14.73        13.15        42.08        38.24         6.21        23.18 
TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 TCGA-44-A4SU 
       16.41        10.68         7.17        18.87        29.00         2.50 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-6742 
       28.57        12.66        35.54        46.72        14.07        15.02 
TCGA-50-5931 TCGA-50-5944 TCGA-50-6591 TCGA-50-6593 TCGA-50-6597 TCGA-55-1596 
        8.78        25.12         3.88        11.05        33.37        45.17 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6986 TCGA-55-7281 TCGA-55-7994 
        2.20        45.34        32.71        71.05         0.59         1.02 
TCGA-55-8091 TCGA-55-8094 TCGA-55-8514 TCGA-55-A48X TCGA-55-A4DF TCGA-55-A4DG 
        1.41         0.13         6.97         1.08         1.55         5.29 
TCGA-62-8394 TCGA-62-8402 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 
        4.54        47.47        56.81        55.40        38.33        87.98 
TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-67-3772 TCGA-69-7973 TCGA-69-A59K 
        2.04        28.41         0.99        18.84         7.56         7.04 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-78-7147 TCGA-78-7540 TCGA-78-8640 
       23.38        26.27        15.35        19.27        28.96       208.60 
TCGA-78-8655 TCGA-78-8660 TCGA-83-5908 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 
       77.59        10.55        27.06        24.49         0.33         0.79 
TCGA-86-8075 TCGA-86-8278 TCGA-86-8280 TCGA-86-8359 TCGA-86-8669 TCGA-91-6828 
       15.75        15.65         0.53         0.85         1.08        10.62 
TCGA-91-6835 TCGA-91-6840 TCGA-91-8499 TCGA-93-7348 TCGA-95-7043 TCGA-95-7947 
        2.60        12.23         1.18         4.18         0.07         1.32 
TCGA-97-7546 TCGA-97-A4M7 TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-MP-A4SY 
       31.66         8.91         5.03         9.44         7.82        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T9 TCGA-MP-A4TJ 
       37.35        86.04        58.85        41.59        11.15 

$`10P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        9.96        24.03        47.05        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-35-3615 TCGA-35-4122 
       15.02         4.96        28.96        22.03         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4629 TCGA-38-4630 
        5.95         8.68        97.74       120.79        28.37        35.28 
TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 
       44.61        26.30         4.37        43.50        46.98        44.94 
TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 
       24.36        42.77         3.19         8.09        37.15        34.06 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
       23.74        33.30        28.37        12.59        23.77        10.78 
TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
        9.93        27.78        11.90        21.63        63.72        32.45 
TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 
       36.49        14.60        12.03        18.31        17.59        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       12.66         3.22         8.55        15.95        15.32         9.44 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4506 
       11.08         4.44         3.75        76.21        28.11        32.84 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 
        8.81        29.46         5.16        55.89        12.13        29.26 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       17.13        11.64        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 
       25.81        31.04        49.28         8.05         9.27        35.87 
TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 
       77.88        21.47         8.45        15.12        18.64        29.00 
TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 
       22.55        42.31        25.51        12.16         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
        8.38        34.26        30.54        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        48.62         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6987 
        5.46         7.76        60.03        24.99        40.54        38.47 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 
        1.02         0.79         1.78         0.62         0.53         6.48 
TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 
        0.69         0.10         0.16         1.08         0.69         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        0.20         0.85         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        7.07         1.41         0.72         0.95         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.30         0.10         4.80         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 
        2.14         3.45         1.02         0.95         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 
        0.92         0.16        39.95        42.38        14.60        77.10 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.77        19.53        56.68        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 
       39.22        40.93        29.92        20.65        39.09        37.02 
TCGA-64-5778 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 
       42.90        51.25        28.44        20.02        14.04        12.66 
TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
        5.69         4.60        13.87         6.64         6.12        22.68 
TCGA-69-7764 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
       13.61         5.42         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        3.25         2.50         4.21         2.01        52.57        29.95 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 
        4.27         1.32         5.39         1.25        20.42        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 
      163.10        27.16         5.65        20.58        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
       40.11        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
       88.11        26.53        31.20         8.02        53.33        10.75 
TCGA-78-7542 TCGA-78-7633 TCGA-78-8648 TCGA-78-8662 TCGA-86-6562 TCGA-86-7701 
       10.55        32.68        39.72       110.50        12.36         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8073 TCGA-86-8076 
       20.71        13.87        19.43        16.70         0.43        10.92 
TCGA-86-8279 TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
       15.85         0.62         1.12         1.45         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 
       41.33         1.97        10.16        13.71        27.68         7.36 
TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD 
        1.15        16.18         6.44         5.69         1.45         7.17 
TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7944 TCGA-95-7948 
        9.76         6.08         1.12         5.36         0.69         4.34 
TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 
        4.04        64.60        63.52        43.76        25.48         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        4.80         0.49         6.48        12.89        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-L4-A4E6 
        1.45         5.56         3.72         9.27         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV 
        3.81         0.20         9.37        20.42        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD 
       58.45         5.49         5.29        31.20         2.43        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
       29.42        11.05         4.67        14.10        19.13        48.99 

  10P LOSS MUTATED 10P LOSS WILD-TYPE 
              0.07               0.03 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            208.60             223.96 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
            13.150             12.625 
[1] "0.1 - 208.6 (13.2)" "0.0 - 224.0 (12.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
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  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "10P LOSS MUTATED"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10P LOSS WILD-TYPE"   "10P LOSS MUTATED" "10P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "10P LOSS MUTATED"   "10P LOSS MUTATED"   "10P LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "10P LOSS MUTATED" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE"   "10P LOSS MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10P LOSS WILD-TYPE" "10P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D59V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  10P LOSS MUTATED         0       28       22        11        17         14
  10P LOSS WILD-TYPE       3       85      109        33        48         51
                    vv
clus                 STAGE IIIB STAGE IV
  10P LOSS MUTATED            1        5
  10P LOSS WILD-TYPE         10       17
D59V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10P LOSS MUTATED    39  48   8   2
  10P LOSS WILD-TYPE 102 207  31  16
D59V4, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  T1               39                102
  T2               48                207
  T3                8                 31
  T4                2                 16
                    vv
clus                  N0  N1 N2+N3
  10P LOSS MUTATED    58  23    15
  10P LOSS WILD-TYPE 232  62    55
D59V5, multiclass
       clus
vv      10P LOSS MUTATED 10P LOSS WILD-TYPE
  N0                  58                232
  N1                  23                 62
  N2+N3               15                 55
                    vv
clus                  M0  M1 M1A M1B  MX
  10P LOSS MUTATED    70   4   0   1  22
  10P LOSS WILD-TYPE 244  14   1   2  93
D59V6, multiclass
D59V7, binary
                    cls
clus                   0   1
  10P LOSS MUTATED    64  34
  10P LOSS WILD-TYPE 180 177
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED     64   34
  10P LOSS WILD-TYPE  180  177
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  FEMALE               64                180
  MALE                 34                177
D59V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10P LOSS MUTATED                            4
  10P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10P LOSS MUTATED                                  12
  10P LOSS WILD-TYPE                                80
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10P LOSS MUTATED                                                   72
  10P LOSS WILD-TYPE                                                220
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10P LOSS MUTATED                                            1
  10P LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10P LOSS MUTATED                                               4
  10P LOSS WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10P LOSS MUTATED                                0
  10P LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10P LOSS MUTATED                                    2
  10P LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10P LOSS MUTATED                              0                             0
  10P LOSS WILD-TYPE                            2                            18
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  10P LOSS MUTATED                                 1
  10P LOSS WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10P LOSS MUTATED                                               1
  10P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10P LOSS MUTATED                              1
  10P LOSS WILD-TYPE                            6
D59V9, multiclass
D59V10, binary
                    cls
clus                   0   1
  10P LOSS MUTATED     2  96
  10P LOSS WILD-TYPE  19 338
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10P LOSS MUTATED      2   96
  10P LOSS WILD-TYPE   19  338
     clus
vv    10P LOSS MUTATED 10P LOSS WILD-TYPE
  NO                 2                 19
  YES               96                338
D59V11, continuous
D59V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10P LOSS MUTATED    76   1   1   4
  10P LOSS WILD-TYPE 236   9   3  14
D59V13, multiclass
    clus
vv   10P LOSS MUTATED 10P LOSS WILD-TYPE
  R0               76                236
  R1                1                  9
  R2                1                  3
  RX                4                 14

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
D60V1, survival
                    sevent
clus2                  0   1
  10Q LOSS MUTATED    73  34
  10Q LOSS WILD-TYPE 228  84
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               107                312 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
                34                 84 
$`10Q LOSS MUTATED`
TCGA-05-4397 TCGA-05-4402 TCGA-05-4420 TCGA-05-4424 TCGA-05-5429 TCGA-05-5715 
       24.03         8.02        29.95        30.02         0.99         2.04 
TCGA-38-4627 TCGA-38-4628 TCGA-38-4631 TCGA-44-2657 TCGA-44-2662 TCGA-44-3396 
       37.71        49.02        11.64        13.15        42.08        37.15 
TCGA-44-3398 TCGA-44-3919 TCGA-44-6775 TCGA-44-6779 TCGA-44-7660 TCGA-44-7662 
       38.24         6.21        23.18        16.41        10.68         7.17 
TCGA-44-7669 TCGA-44-7670 TCGA-44-A4SU TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 
       18.87        29.00         2.50        12.66        35.54        14.07 
TCGA-49-6742 TCGA-50-5931 TCGA-50-5944 TCGA-50-6591 TCGA-50-6592 TCGA-50-6597 
       15.02         8.78        25.12         3.88        25.51        33.37 
TCGA-50-6673 TCGA-55-1596 TCGA-55-5899 TCGA-55-6971 TCGA-55-6979 TCGA-55-6980 
        0.72        45.17         2.86         0.92         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6986 TCGA-55-7281 TCGA-55-7994 TCGA-55-8091 
       45.34        32.71        71.05         0.59         1.02         1.41 
TCGA-55-8206 TCGA-55-8207 TCGA-55-8505 TCGA-55-8514 TCGA-55-A48X TCGA-55-A4DF 
        1.51         2.17         0.95         6.97         1.08         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8402 TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 
        5.29         4.54        47.47        56.81        55.40        38.33 
TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-67-3770 TCGA-67-3772 TCGA-69-7973 
       87.98         2.04        28.41         0.99        18.84         7.56 
TCGA-69-7978 TCGA-69-7979 TCGA-69-8255 TCGA-69-A59K TCGA-73-4666 TCGA-73-4668 
        2.30         2.93         4.21         7.04        26.27        15.35 
TCGA-78-7147 TCGA-78-7535 TCGA-78-7540 TCGA-78-7542 TCGA-78-8640 TCGA-78-8655 
       19.27        31.20        28.96        10.55       208.60        77.59 
TCGA-78-8660 TCGA-83-5908 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
       10.55        27.06        16.70         0.33         0.79        15.75 
TCGA-86-8278 TCGA-86-8280 TCGA-86-8359 TCGA-86-8669 TCGA-91-6828 TCGA-91-6829 
       15.65         0.53         0.85         1.08        10.62        41.33 
TCGA-91-6835 TCGA-91-6840 TCGA-91-6847 TCGA-91-8499 TCGA-93-7348 TCGA-95-7043 
        2.60        12.23        27.68         1.18         4.18         0.07 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-8175 TCGA-97-A4M7 
        0.69         1.32         4.34        31.66         2.83         8.91 
TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L9-A443 TCGA-MP-A4SY TCGA-MP-A4T2 
        5.03         9.44         7.82         3.81        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T9 TCGA-MP-A4TF TCGA-MP-A4TJ 
       86.04        58.85        41.59        11.05        11.15 

$`10Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4398 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 
        9.96        47.05        19.00        20.05         2.96        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 
        8.98        12.00        21.99        26.01        26.01        25.02 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        24.00        15.02        15.02         4.96        28.96 
TCGA-05-5428 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
       22.03         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 
      120.79        28.37        35.28        44.61        14.73        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 
        4.37        43.50        46.98        44.94        24.36        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        3.19         8.09        34.06        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        23.77        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7661 
       21.63        63.72        32.45        36.49        14.60        12.03 
TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       18.31        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       15.95        15.32         9.44        11.08         4.44         3.75 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4501 TCGA-49-4506 TCGA-49-4507 
       76.21        28.11        28.57        46.72        32.84         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46         5.16        55.89        12.13        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       11.64        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 
       31.04        49.28         8.05         9.27        35.87        77.88 
TCGA-50-5935 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 
       21.47         8.45        15.12        18.64        29.00        22.55 
TCGA-50-6590 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-7109 TCGA-53-7624 
       42.31        11.05        12.16         6.21         8.38        34.26 
TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 
       30.54        13.94         9.21        23.05        38.73        48.62 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 
        0.07        32.61         0.79        42.48        40.70        15.25 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
       48.49         3.88         5.46        60.03        24.99        40.54 
TCGA-55-6987 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
       38.47         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        6.48         0.69         0.10         0.16         1.08         0.69 
TCGA-55-8089 TCGA-55-8090 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 
        3.02         0.20         0.85         0.13         1.55         0.49 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 
        7.07         1.41         0.72         0.36         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         0.49         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        3.45         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-A46O 
        0.16        39.95        42.38        14.60        77.10        47.77 
TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 
       19.53        56.68        54.35        67.96        72.30        39.22 
TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5778 
       40.93        29.92        20.65        39.09        37.02        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25        28.44        20.02        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 
        4.60        13.87         6.64         6.12        22.68        13.61 
TCGA-69-7765 TCGA-69-7974 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 
        5.42         6.05        12.56         3.25         2.50         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       52.57        23.38        29.95         4.27         1.32         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
        1.25        20.42        17.06       163.10        27.16         5.65 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7633 TCGA-78-8648 TCGA-78-8662 TCGA-86-6562 
       53.33        10.75        32.68        39.72       110.50        12.36 
TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8073 
        0.36        20.71        13.87        19.43        24.49         0.43 
TCGA-86-8076 TCGA-86-8279 TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
       10.92        15.85         0.62         1.12         1.45         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.49        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
        1.28         1.97        10.16        13.71         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 
       16.18         6.44         5.69         1.45         7.17         9.76 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 
        6.08         1.12         5.36         4.04        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 
        5.95         5.36         4.80         0.49         6.48        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE 
       14.04        15.06         1.45         5.56         3.72         9.27 
TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 
        6.97         2.50         0.20         9.37        20.42        11.61 
TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TC 
       86.14        58.45         5.49         5.29        31.20         2.43 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
       10.09        29.42         4.67        14.10        19.13        48.99 

  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
              0.07               0.03 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
            208.60             223.96 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
             11.05              13.66 
[1] "0.1 - 208.6 (11.1)" "0.0 - 224.0 (13.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
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"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "10Q LOSS MUTATED"   "10Q LOSS MUTATED"   "10Q LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "10Q LOSS MUTATED" "10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE"   "10Q LOSS MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"10Q LOSS WILD-TYPE" "10Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D60V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  10Q LOSS MUTATED         0       33       34        13        20         13
  10Q LOSS WILD-TYPE       3       80       97        31        45         52
                    vv
clus                 STAGE IIIB STAGE IV
  10Q LOSS MUTATED            1        4
  10Q LOSS WILD-TYPE         10       18
D60V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  10Q LOSS MUTATED    44  63   8   2
  10Q LOSS WILD-TYPE  97 192  31  16
D60V4, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  T1               44                 97
  T2               63                192
  T3                8                 31
  T4                2                 16
                    vv
clus                  N0  N1 N2+N3
  10Q LOSS MUTATED    74  28    14
  10Q LOSS WILD-TYPE 216  57    56
D60V5, multiclass
       clus
vv      10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  N0                  74                216
  N1                  28                 57
  N2+N3               14                 56
                    vv
clus                  M0  M1 M1A M1B  MX
  10Q LOSS MUTATED    85   4   0   0  29
  10Q LOSS WILD-TYPE 229  14   1   3  86
D60V6, multiclass
D60V7, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED    71  47
  10Q LOSS WILD-TYPE 173 164
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED     71   47
  10Q LOSS WILD-TYPE  173  164
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  FEMALE               71                173
  MALE                 47                164
D60V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  10Q LOSS MUTATED                            5
  10Q LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  10Q LOSS MUTATED                                  17
  10Q LOSS WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  10Q LOSS MUTATED                                                   82
  10Q LOSS WILD-TYPE                                                210
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  10Q LOSS MUTATED                                            1
  10Q LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  10Q LOSS MUTATED                                               5
  10Q LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  10Q LOSS MUTATED                                0
  10Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  10Q LOSS MUTATED                                    2
  10Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  10Q LOSS MUTATED                              0                             0
  10Q LOSS WILD-TYPE                            2                            18
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  10Q LOSS MUTATED                                 1
  10Q LOSS WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  10Q LOSS MUTATED                                               3
  10Q LOSS WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  10Q LOSS MUTATED                              2
  10Q LOSS WILD-TYPE                            5
D60V9, multiclass
D60V10, binary
                    cls
clus                   0   1
  10Q LOSS MUTATED     2 116
  10Q LOSS WILD-TYPE  19 318
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  10Q LOSS MUTATED      2  116
  10Q LOSS WILD-TYPE   19  318
     clus
vv    10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  NO                 2                 19
  YES              116                318
D60V11, continuous
D60V12, continuous
                    vv
clus                  R0  R1  R2  RX
  10Q LOSS MUTATED    87   1   1   6
  10Q LOSS WILD-TYPE 225   9   3  12
D60V13, multiclass
    clus
vv   10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  R0               87                225
  R1                1                  9
  R2                1                  3
  RX                6                 12

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
D61V1, survival
                    sevent
clus2                  0   1
  11P LOSS MUTATED    68  29
  11P LOSS WILD-TYPE 233  89
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                97                322 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
                29                 89 
$`11P LOSS MUTATED`
TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 
       19.92        45.01        37.02        26.01        24.00        15.02 
TCGA-05-5425 TCGA-05-5428 TCGA-35-5375 TCGA-38-4625 TCGA-38-4632 TCGA-44-2662 
       28.96        22.03         8.68        97.74        44.61        42.08 
TCGA-44-3918 TCGA-44-5643 TCGA-44-7662 TCGA-44-7667 TCGA-44-7671 TCGA-44-A47F 
       34.06        33.30         7.17        18.31        17.59        11.08 
TCGA-44-A4SS TCGA-49-4487 TCGA-49-4490 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 
        3.75        28.11        12.66        14.07        32.84         8.81 
TCGA-49-4510 TCGA-50-5072 TCGA-50-5931 TCGA-50-5936 TCGA-50-5939 TCGA-50-6592 
       29.46         8.05         8.78         8.45        15.12        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ 
       11.05        12.16         0.72        34.26        30.54         9.21 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6972 TCGA-55-7573 
       48.62        45.17         2.86        32.61        48.49         0.13 
TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7994 TCGA-55-8089 TCGA-55-8302 
        1.02         1.78         0.62         1.02         3.02         0.72 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8615 TCGA-55-A490 TCGA-55-A492 TCGA-55-A4DG 
        7.46         0.30         0.49         1.58         0.03         5.29 
TCGA-62-8397 TCGA-62-A46S TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 
       42.38        54.35        40.93        29.92        56.81        55.40 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5815 TCGA-69-7763 TCGA-69-7764 TCGA-69-A59K 
       87.98        42.90        28.44        22.68        13.61         7.04 
TCGA-73-4659 TCGA-73-4670 TCGA-73-4675 TCGA-73-7499 TCGA-78-7145 TCGA-78-7148 
       23.38         4.27         1.32        17.06        27.16        20.58 
TCGA-78-7154 TCGA-78-7160 TCGA-78-7535 TCGA-78-8640 TCGA-86-7701 TCGA-86-7711 
       19.50        22.29        31.20       208.60         0.36        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8074 TCGA-86-8358 TCGA-86-8669 TCGA-86-A4D0 
       13.87        19.43         0.79         0.62         1.08         0.99 
TCGA-91-6836 TCGA-91-6847 TCGA-93-8067 TCGA-95-7948 TCGA-97-7553 TCGA-97-8174 
       13.71        27.68         6.08         4.34        43.76         5.36 
TCGA-J2-A4AD TCGA-L4-A4E5 TCGA-MN-A4N1 TCGA-MP-A4T2 TCGA-MP-A4T8 TCGA-MP-A4TE 
        9.44         6.97         9.37        37.35         5.29        29.42 
TCGA-MP-A4TF 
       11.05 

$`11P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       50.07         3.98        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-5420 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       25.02        15.02         4.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        44.94        24.36        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 
        8.09        37.15        38.24         6.21        23.74        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        23.77        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       21.63        23.18        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 
       14.60        10.68        12.03        18.87        29.00        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       12.66         3.22         8.55        15.95        15.32         9.44 
TCGA-44-A47G TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 
        4.44         2.50        76.21        28.57        35.54        46.72 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
        5.16        55.89        15.02        12.13        29.26        17.13 
TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 
       11.64        20.48        71.47        70.55        14.96        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       31.04        49.28         9.27        35.87        77.88        21.47 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6595 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 
        6.21        33.37         8.38        13.94        23.05        38.73 
TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
        0.07         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 
        1.12         3.12         1.32         1.28         1.02         0.79 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 
        0.53         6.48         0.69         0.10         0.16         1.08 
TCGA-55-8087 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 
        0.69         0.20         1.41         0.85         0.13         1.55 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 
        0.49         1.51         2.17         7.07         1.41         0.95 
TCGA-55-8506 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.36         0.10         4.80         6.97         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A493 
        2.14         3.45         1.08         1.02         0.95         0.92 
TCGA-55-A494 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 
        0.16         1.55         4.54        39.95        14.60        77.10 
TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46U TCGA-62-A46V 
       47.47        47.77        19.53        56.68        67.96        72.30 
TCGA-62-A470 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       39.22        20.65        39.09        37.02        38.33         2.04 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       12.66         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        5.42         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4662 
        3.25         2.50         4.21         2.01        52.57        29.95 
TCGA-73-4666 TCGA-73-4668 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 
       26.27        15.35         5.39         1.25        20.42       163.10 
TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 
        5.65        19.27        35.93        21.86        39.48        24.99 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7161 TCGA-78-7162 
       38.50        32.09         5.88        40.11         7.04       104.15 
TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 
      223.96         8.48        88.11        26.53         8.02        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 
       10.75        28.96        10.55        32.68        39.72        77.59 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7955 TCGA-86-8054 
       10.55       110.50        27.06        12.36        16.70        24.49 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
        0.33         0.43        15.75        10.92        15.65        15.85 
TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
        0.53         0.85         1.12         1.45         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       14.93        13.28         0.33         0.43         1.28        10.62 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 TCGA-91-6848 
       41.33         1.97        10.16         2.60        12.23         7.36 
TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC 
        1.15        16.18         6.44         5.69         1.18         1.45 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 
        7.17         9.76         4.18         1.12         0.07         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        0.69         1.32         4.04        31.66        64.60        63.52 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       25.48         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        2.83         4.80         0.49         6.48         8.91        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 
        9.27         7.82         2.50         3.81         0.20        20.42 
TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T4 TCGA-MP-A4T6 
       11.61        86.14        58.45        49.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TH 
        5.49        41.59        31.20         2.43        10.09         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        11.15        19.13        48.99 

  11P LOSS MUTATED 11P LOSS WILD-TYPE 
              0.03               0.07 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
            208.60             223.96 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
             15.12              12.08 
[1] "0.0 - 208.6 (15.1)" "0.1 - 224.0 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
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"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "11P LOSS MUTATED" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED" "11P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE"   "11P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"11P LOSS WILD-TYPE"   "11P LOSS MUTATED"   "11P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11P LOSS WILD-TYPE" "11P LOSS WILD-TYPE" 
[1] "hr=" "1"  
D61V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  11P LOSS MUTATED         1       22       28        13        18         15
  11P LOSS WILD-TYPE       2       91      103        31        47         50
                    vv
clus                 STAGE IIIB STAGE IV
  11P LOSS MUTATED            0        7
  11P LOSS WILD-TYPE         11       15
D61V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11P LOSS MUTATED    30  58  13   3
  11P LOSS WILD-TYPE 111 197  26  15
D61V4, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  T1               30                111
  T2               58                197
  T3               13                 26
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  11P LOSS MUTATED    66  24    14
  11P LOSS WILD-TYPE 224  61    56
D61V5, multiclass
       clus
vv      11P LOSS MUTATED 11P LOSS WILD-TYPE
  N0                  66                224
  N1                  24                 61
  N2+N3               14                 56
                    vv
clus                  M0  M1 M1A M1B  MX
  11P LOSS MUTATED    72   7   0   0  25
  11P LOSS WILD-TYPE 242  11   1   3  90
D61V6, multiclass
D61V7, binary
                    cls
clus                   0   1
  11P LOSS MUTATED    40  64
  11P LOSS WILD-TYPE 204 147
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED     40   64
  11P LOSS WILD-TYPE  204  147
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  FEMALE               40                204
  MALE                 64                147
D61V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11P LOSS MUTATED                            1
  11P LOSS WILD-TYPE                         12
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11P LOSS MUTATED                                  21
  11P LOSS WILD-TYPE                                71
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11P LOSS MUTATED                                                   75
  11P LOSS WILD-TYPE                                                217
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11P LOSS MUTATED                                            0
  11P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11P LOSS MUTATED                                               2
  11P LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11P LOSS MUTATED                                1
  11P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11P LOSS MUTATED                                    0
  11P LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11P LOSS MUTATED                              0                             3
  11P LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  11P LOSS MUTATED                                 0
  11P LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11P LOSS MUTATED                                               0
  11P LOSS WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11P LOSS MUTATED                              1
  11P LOSS WILD-TYPE                            6
D61V9, multiclass
D61V10, binary
                    cls
clus                   0   1
  11P LOSS MUTATED     3 101
  11P LOSS WILD-TYPE  18 333
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11P LOSS MUTATED      3  101
  11P LOSS WILD-TYPE   18  333
     clus
vv    11P LOSS MUTATED 11P LOSS WILD-TYPE
  NO                 3                 18
  YES              101                333
D61V11, continuous
D61V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11P LOSS MUTATED    73   2   1   7
  11P LOSS WILD-TYPE 239   8   3  11
D61V13, multiclass
    clus
vv   11P LOSS MUTATED 11P LOSS WILD-TYPE
  R0               73                239
  R1                2                  8
  R2                1                  3
  RX                7                 11

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
D62V1, survival
                    sevent
clus2                  0   1
  11Q LOSS MUTATED    56  22
  11Q LOSS WILD-TYPE 245  96
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                78                341 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                22                 96 
$`11Q LOSS MUTATED`
TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4427 TCGA-05-4433 TCGA-05-5420 
       19.92        45.01        37.02        26.01        24.00        15.02 
TCGA-05-5425 TCGA-05-5428 TCGA-35-5375 TCGA-38-4625 TCGA-38-4631 TCGA-44-3918 
       28.96        22.03         8.68        97.74        11.64        34.06 
TCGA-44-4112 TCGA-44-5643 TCGA-44-7667 TCGA-44-7671 TCGA-44-A47F TCGA-44-A4SS 
       23.74        33.30        18.31        17.59        11.08         3.75 
TCGA-49-4487 TCGA-49-4506 TCGA-49-4510 TCGA-50-5072 TCGA-50-5931 TCGA-50-5936 
       28.11        32.84        29.46         8.05         8.78         8.45 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6673 TCGA-53-7626 TCGA-55-1595 
       25.51        11.05        12.16         0.72        30.54        48.62 
TCGA-55-6972 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7995 TCGA-55-8089 
       48.49         1.02         1.78         0.62         0.16         3.02 
TCGA-55-8094 TCGA-55-8302 TCGA-55-8511 TCGA-55-8615 TCGA-55-A490 TCGA-62-8397 
        0.13         0.72         0.30         0.49         1.58        42.38 
TCGA-62-A46S TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 
       54.35        39.22        29.92        56.81        39.09        55.40 
TCGA-64-5774 TCGA-64-5778 TCGA-64-5815 TCGA-69-7763 TCGA-69-7764 TCGA-73-4662 
       87.98        42.90        28.44        22.68        13.61        29.95 
TCGA-73-4675 TCGA-73-7499 TCGA-78-7145 TCGA-78-7148 TCGA-78-7160 TCGA-78-8640 
        1.32        17.06        27.16        20.58        22.29       208.60 
TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-86-8358 
        0.36        13.87        19.43        24.49         0.79         0.62 
TCGA-86-8669 TCGA-86-A4D0 TCGA-91-6847 TCGA-93-8067 TCGA-97-8174 TCGA-J2-A4AD 
        1.08         0.99        27.68         6.08         5.36         9.44 
TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4T2 TCGA-MP-A4T8 TCGA-MP-A4TE TCGA-MP-A4TF 
        9.37        11.61        37.35         5.29        29.42        11.05 

$`11Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 
       50.07         3.98        14.01         9.96        24.03        47.05 
TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 
        8.02        19.00        20.05         2.96        14.93         8.98 
TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       29.95        12.00        30.02        21.99        26.01        25.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       25.02        15.02         4.96         0.99         2.04         0.46 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        7.36         5.95       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        44.61        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
       46.98        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-5644 
        3.19         8.09        37.15        38.24         6.21        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        23.77        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       21.63        23.18        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7670 
       14.60        10.68        12.03         7.17        18.87        29.00 
TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A 
       23.64        12.66         3.22         8.55        15.95        15.32 
TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SU TCGA-49-4486 TCGA-49-4488 TCGA-49-4490 
        9.44         4.44         2.50        76.21        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 
       35.54        46.72        14.07         8.81         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
       15.02        12.13        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       71.47        70.55        14.96        25.81        31.04        49.28 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        9.27        35.87        77.88        21.47        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6595 
       29.00        25.12        22.55        42.31         3.88         6.21 
TCGA-50-6597 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
       33.37         8.38        34.26        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       38.73        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6975 TCGA-55-6978 
       42.48        40.70        15.25         0.92         3.88         5.46 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        7.76         2.20        45.34        32.71        60.03        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 
       40.54        71.05        38.47         0.59         1.12         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7907 
        3.12         1.32         1.28         1.02         0.79         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-8085 TCGA-55-8087 
        6.48         0.69         0.10         1.02         1.08         0.69 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 
        0.20         1.41         0.85         1.55         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        2.17         7.07         1.41         0.95         0.36         7.46 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 
        0.10         4.80         6.97         1.58         1.61         2.14 
TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 
        3.45         1.08         1.02         0.95         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8398 
        0.16         1.55         5.29         4.54        39.95        14.60 
TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46U 
       77.10        47.47        47.77        19.53        56.68        67.96 
TCGA-62-A46V TCGA-62-A471 TCGA-64-1677 TCGA-64-1680 TCGA-64-1681 TCGA-64-5775 
       72.30        40.93        20.65        37.02        38.33         2.04 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 
       12.66         5.69         4.60        13.87         6.64         6.12 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        5.42         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 
        3.25         2.50         4.21         7.04         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       23.38        26.27        15.35         4.27         5.39         1.25 
TCGA-73-7498 TCGA-78-7143 TCGA-78-7146 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 
       20.42       163.10         5.65        19.27        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 
       39.48        24.99        19.50        38.50        32.09         5.88 
TCGA-78-7159 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       40.11         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 
       26.53        31.20         8.02        53.33        10.75        28.96 
TCGA-78-7542 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 
       10.55        32.68        39.72        77.59        10.55       110.50 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 
       27.06        12.36        20.71        16.70         0.33         0.43 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8359 
       15.75        10.92        15.65        15.85         0.53         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 
        1.12         1.45         0.56         0.49        14.93        13.28 
TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 
        0.33         0.43         1.28        10.62        41.33         1.97 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 
       10.16         2.60        13.71        12.23         7.36         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
       16.18         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7347 TCGA-93-7348 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 
        9.76         4.18         1.12         0.07         5.36         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        1.32         4.34         4.04        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 
        5.95         2.83         4.80         0.49         6.48         8.91 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
       12.89        14.04        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        3.72         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T4 
        0.20        20.42        86.14        58.45        49.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD 
       58.85         5.49        41.59        31.20         2.43        10.09 
TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        14.10        11.15        19.13        48.99 

  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
              0.13               0.03 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
            208.60             223.96 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
             18.87              12.13 
[1] "0.1 - 208.6 (18.9)" "0.0 - 224.0 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
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"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "11Q LOSS MUTATED"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"11Q LOSS WILD-TYPE"   "11Q LOSS MUTATED"   "11Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"11Q LOSS WILD-TYPE" "11Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D62V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  11Q LOSS MUTATED         0       19       22        12        13         13
  11Q LOSS WILD-TYPE       3       94      109        32        52         52
                    vv
clus                 STAGE IIIB STAGE IV
  11Q LOSS MUTATED            0        4
  11Q LOSS WILD-TYPE         11       18
D62V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  11Q LOSS MUTATED    26  47   8   2
  11Q LOSS WILD-TYPE 115 208  31  16
D62V4, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  T1               26                115
  T2               47                208
  T3                8                 31
  T4                2                 16
                    vv
clus                  N0  N1 N2+N3
  11Q LOSS MUTATED    55  15    13
  11Q LOSS WILD-TYPE 235  70    57
D62V5, multiclass
       clus
vv      11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  N0                  55                235
  N1                  15                 70
  N2+N3               13                 57
                    vv
clus                  M0  M1 M1A M1B  MX
  11Q LOSS MUTATED    65   3   0   1  14
  11Q LOSS WILD-TYPE 249  15   1   2 101
D62V6, multiclass
D62V7, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED    32  51
  11Q LOSS WILD-TYPE 212 160
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED     32   51
  11Q LOSS WILD-TYPE  212  160
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  FEMALE               32                212
  MALE                 51                160
D62V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  11Q LOSS MUTATED                            2
  11Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  11Q LOSS MUTATED                                  16
  11Q LOSS WILD-TYPE                                76
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  11Q LOSS MUTATED                                                   59
  11Q LOSS WILD-TYPE                                                233
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  11Q LOSS MUTATED                                            0
  11Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  11Q LOSS MUTATED                                               1
  11Q LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  11Q LOSS MUTATED                                1
  11Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  11Q LOSS MUTATED                                    0
  11Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  11Q LOSS MUTATED                              0                             3
  11Q LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  11Q LOSS MUTATED                                 0
  11Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  11Q LOSS MUTATED                                               0
  11Q LOSS WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  11Q LOSS MUTATED                              1
  11Q LOSS WILD-TYPE                            6
D62V9, multiclass
D62V10, binary
                    cls
clus                   0   1
  11Q LOSS MUTATED     2  81
  11Q LOSS WILD-TYPE  19 353
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  11Q LOSS MUTATED      2   81
  11Q LOSS WILD-TYPE   19  353
     clus
vv    11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  NO                 2                 19
  YES               81                353
D62V11, continuous
D62V12, continuous
                    vv
clus                  R0  R1  R2  RX
  11Q LOSS MUTATED    62   2   0   5
  11Q LOSS WILD-TYPE 250   8   4  13
D62V13, multiclass
    clus
vv   11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  R0               62                250
  R1                2                  8
  R2                0                  4
  RX                5                 13

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
D63V1, survival
                    sevent
clus2                  0   1
  12P LOSS MUTATED    66  26
  12P LOSS WILD-TYPE 235  92
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                92                327 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
                26                 92 
$`12P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4405 TCGA-05-4426 TCGA-05-4434 TCGA-38-6178 TCGA-44-2656 
       50.07        20.05        26.01        15.02        14.73        46.98 
TCGA-44-2657 TCGA-44-2661 TCGA-44-2666 TCGA-44-6775 TCGA-44-6779 TCGA-44-7662 
       13.15        24.36         3.19        23.18        16.41         7.17 
TCGA-44-7671 TCGA-44-8117 TCGA-44-8120 TCGA-44-A47B TCGA-44-A47F TCGA-44-A4SU 
       17.59        12.66         8.55         9.44        11.08         2.50 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4510 TCGA-49-6743 TCGA-49-6744 
       28.57        12.66        46.72        29.46        12.13        29.26 
TCGA-50-5049 TCGA-50-5051 TCGA-50-5068 TCGA-50-5932 TCGA-50-5939 TCGA-50-5942 
       70.55        14.96        49.28        35.87        15.12        29.00 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 
       22.55         3.88        11.05        12.16        33.37        23.05 
TCGA-55-5899 TCGA-55-6979 TCGA-55-6982 TCGA-55-6984 TCGA-55-7573 TCGA-55-7727 
        2.86         7.76        32.71        24.99         0.13         1.02 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8510 TCGA-55-8511 TCGA-55-8514 TCGA-55-8616 
        0.10         0.69         7.46         0.30         6.97         1.58 
TCGA-55-8619 TCGA-55-A48X TCGA-55-A48Z TCGA-55-A4DG TCGA-62-A46R TCGA-62-A46S 
        1.61         1.08         0.95         5.29        56.68        54.35 
TCGA-64-1676 TCGA-64-5778 TCGA-67-3771 TCGA-67-6217 TCGA-69-7763 TCGA-69-7765 
       56.81        42.90        20.02        13.87        22.68         5.42 
TCGA-69-7974 TCGA-69-8253 TCGA-71-6725 TCGA-73-4677 TCGA-73-7498 TCGA-78-7147 
        6.05         3.25         2.01         1.25        20.42        19.27 
TCGA-78-7153 TCGA-78-7535 TCGA-86-7701 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
       24.99        31.20         0.36         0.43         0.79        15.75 
TCGA-86-8279 TCGA-86-8358 TCGA-86-8672 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 
       15.85         0.62         0.49        27.68         1.15        16.18 
TCGA-95-7039 TCGA-95-7043 TCGA-95-7947 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
        1.12         0.07         1.32         4.34        31.66        64.60 
TCGA-97-7554 TCGA-97-7938 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-J2-A4AD 
       25.48         0.59         4.80        12.89        14.04         9.44 
TCGA-MP-A4TC TCGA-MP-A4TK 
        2.43        19.13 

$`12P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
        3.98        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        19.00         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4427 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 
       25.02        25.02        24.00        15.02         4.96        28.96 
TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
       22.03         0.99         2.04         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       35.28        11.64        44.61        26.30         4.37        43.50 
TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 
       44.94        42.08        42.77         8.09        37.15        38.24 
TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
       34.06         6.21        23.74        33.30        28.37        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       23.77        10.78         9.93        27.78        11.90        21.63 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49        14.60        10.68        12.03 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 
       18.31        18.87        29.00        23.64         3.22        15.95 
TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 
       15.32         4.44         3.75        76.21        28.11        35.54 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 
       14.07        32.84         8.81         5.16        55.89        15.02 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5055 TCGA-50-5066 
       17.13        11.64        20.48        71.47        25.81        31.04 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 
        8.05         9.27         8.78        77.88        21.47         8.45 
TCGA-50-5941 TCGA-50-5944 TCGA-50-6590 TCGA-50-6592 TCGA-50-6595 TCGA-50-6673 
       18.64        25.12        42.31        25.51         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 
        8.38        34.26        30.54        13.94         9.21        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 
       48.62        45.17         0.07        32.61         0.79        42.48 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 
       40.70        15.25         0.92        48.49         3.88         5.46 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
        2.20        45.34        60.03        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        0.59         1.12         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 
        1.02         0.16         1.08         3.02         0.20         1.41 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        0.85         0.13         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8512 
        7.07         1.41         0.72         0.95         0.36         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48Y TCGA-55-A490 
        4.80         0.49         2.14         3.45         1.02         1.58 
TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8394 TCGA-62-8395 
        0.03         0.92         0.16         1.55         4.54        39.95 
TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P 
       42.38        14.60        77.10        47.47        47.77        19.53 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 
       67.96        72.30        39.22        40.93        29.92        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       39.09        55.40        37.02        38.33        87.98         2.04 
TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3772 TCGA-67-3773 
       28.41        51.25        28.44         0.99        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 
       12.66         5.69         4.60         6.64         6.12        13.61 
TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8254 TCGA-69-8255 
        7.56         2.30         2.93        12.56         2.50         4.21 
TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        7.04        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        4.27         1.32         5.39        17.06       163.10        27.16 
TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 
        5.65        20.58        35.93        21.86        39.48        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 
      104.15       223.96         8.48        88.11        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 
       53.33        10.75        28.96        10.55        32.68       208.60 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 
       39.72        77.59        10.55       110.50        27.06        12.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 
       20.71        13.87        19.43        16.70        24.49         0.33 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       10.92        15.65         0.53         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 
        1.08         0.56        14.93        13.28         0.33         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.43         1.28        10.62        41.33         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6848 TCGA-91-8496 TCGA-91-8497 
        2.60        13.71        12.23         7.36         6.44         5.69 
TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 
        1.18         1.45         7.17         9.76         4.18         6.08 
TCGA-95-7567 TCGA-95-7944 TCGA-95-A4VK TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 
        5.36         0.69         4.04        63.52        43.76         5.95 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8179 
        0.72         3.48         5.95         5.36         2.83         0.49 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 
        6.48         8.91        15.06         1.45         5.56         5.03 
TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 
        3.72         9.27         7.82         6.97         2.50         3.81 
TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW 
        0.20         9.37        20.42        11.61        86.14        58.45 
TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 
       49.35        37.35        86.04        58.85         5.49         5.29 
TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH 
       41.59        31.20        10.09        29.42        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A5C7 
       14.10        11.15        48.99 

  12P LOSS MUTATED 12P LOSS WILD-TYPE 
              0.07               0.03 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             70.55             223.96 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
             13.02              12.56 
[1] "0.1 - 70.5 (13.0)"  "0.0 - 224.0 (12.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
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"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "12P LOSS MUTATED"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "12P LOSS MUTATED"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED"   "12P LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"12P LOSS WILD-TYPE"   "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE"   "12P LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" "12P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "12P LOSS MUTATED" "12P LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D63V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  12P LOSS MUTATED         0       21       36         7        14         14
  12P LOSS WILD-TYPE       3       92       95        37        51         51
                    vv
clus                 STAGE IIIB STAGE IV
  12P LOSS MUTATED            1        4
  12P LOSS WILD-TYPE         10       18
D63V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12P LOSS MUTATED    26  60   7   3
  12P LOSS WILD-TYPE 115 195  32  15
D63V4, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  T1               26                115
  T2               60                195
  T3                7                 32
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  12P LOSS MUTATED    63  19    14
  12P LOSS WILD-TYPE 227  66    56
D63V5, multiclass
       clus
vv      12P LOSS MUTATED 12P LOSS WILD-TYPE
  N0                  63                227
  N1                  19                 66
  N2+N3               14                 56
                    vv
clus                  M0  M1 M1A M1B  MX
  12P LOSS MUTATED    59   3   0   0  34
  12P LOSS WILD-TYPE 255  15   1   3  81
D63V6, multiclass
D63V7, binary
                    cls
clus                   0   1
  12P LOSS MUTATED    63  34
  12P LOSS WILD-TYPE 181 177
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED     63   34
  12P LOSS WILD-TYPE  181  177
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  FEMALE               63                181
  MALE                 34                177
D63V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12P LOSS MUTATED                            1
  12P LOSS WILD-TYPE                         12
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12P LOSS MUTATED                                  20
  12P LOSS WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12P LOSS MUTATED                                                   64
  12P LOSS WILD-TYPE                                                228
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12P LOSS MUTATED                                            0
  12P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12P LOSS MUTATED                                               5
  12P LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12P LOSS MUTATED                                1
  12P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12P LOSS MUTATED                                    0
  12P LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12P LOSS MUTATED                              0                             4
  12P LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  12P LOSS MUTATED                                 0
  12P LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12P LOSS MUTATED                                               1
  12P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12P LOSS MUTATED                              1
  12P LOSS WILD-TYPE                            6
D63V9, multiclass
D63V10, binary
                    cls
clus                   0   1
  12P LOSS MUTATED     3  94
  12P LOSS WILD-TYPE  18 340
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12P LOSS MUTATED      3   94
  12P LOSS WILD-TYPE   18  340
     clus
vv    12P LOSS MUTATED 12P LOSS WILD-TYPE
  NO                 3                 18
  YES               94                340
D63V11, continuous
D63V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12P LOSS MUTATED    60   1   1   3
  12P LOSS WILD-TYPE 252   9   3  15
D63V13, multiclass
    clus
vv   12P LOSS MUTATED 12P LOSS WILD-TYPE
  R0               60                252
  R1                1                  9
  R2                1                  3
  RX                3                 15

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
D64V1, survival
                    sevent
clus2                  0   1
  12Q LOSS MUTATED    55  26
  12Q LOSS WILD-TYPE 246  92
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                81                338 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                26                 92 
$`12Q LOSS MUTATED`
TCGA-05-4426 TCGA-05-4434 TCGA-05-5428 TCGA-38-4632 TCGA-38-6178 TCGA-44-2657 
       26.01        15.02        22.03        44.61        14.73        13.15 
TCGA-44-2661 TCGA-44-6775 TCGA-44-6779 TCGA-44-7662 TCGA-44-7671 TCGA-44-8120 
       24.36        23.18        16.41         7.17        17.59         8.55 
TCGA-44-A47F TCGA-44-A4SU TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4510 
       11.08         2.50        28.57        12.66        46.72        29.46 
TCGA-49-6743 TCGA-49-6744 TCGA-50-5049 TCGA-50-5068 TCGA-50-5932 TCGA-50-5939 
       12.13        29.26        70.55        49.28        35.87        15.12 
TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-55-1592 
       22.55         3.88        11.05        12.16        33.37        23.05 
TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 TCGA-55-6984 TCGA-55-7283 TCGA-55-7727 
        7.76         2.20        32.71        24.99         1.12         1.02 
TCGA-55-7914 TCGA-55-8510 TCGA-55-8511 TCGA-55-8514 TCGA-55-8616 TCGA-55-8619 
        0.10         7.46         0.30         6.97         1.58         1.61 
TCGA-55-A48X TCGA-55-A48Z TCGA-55-A4DG TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U 
        1.08         0.95         5.29        56.68        54.35        67.96 
TCGA-64-5778 TCGA-67-6217 TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-8253 
       42.90        13.87        22.68         5.42         6.05         3.25 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4677 TCGA-73-7498 TCGA-78-7147 TCGA-78-7153 
        2.01        52.57         1.25        20.42        19.27        24.99 
TCGA-78-7535 TCGA-86-8074 TCGA-86-8075 TCGA-86-8280 TCGA-91-6829 TCGA-91-6847 
       31.20         0.79        15.75         0.53        41.33        27.68 
TCGA-91-7771 TCGA-95-7039 TCGA-95-7043 TCGA-95-7948 TCGA-97-7546 TCGA-97-7547 
       16.18         1.12         0.07         4.34        31.66        64.60 
TCGA-97-7554 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-J2-A4AD TCGA-MN-A4N1 
       25.48         4.80        12.89        14.04         9.44         9.37 
TCGA-MN-A4N5 TCGA-MP-A4TC TCGA-MP-A4TK 
       11.61         2.43        19.13 

$`12Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 
        9.96        24.03        47.05         8.02        19.00        20.05 
TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 
        2.96        14.93         8.98        29.95        12.00        30.02 
TCGA-05-4425 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
       21.99        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 
        4.96        28.96         0.99         2.04         0.46         7.36 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 
        5.95         8.68        97.74       120.79        37.71        49.02 
TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       28.37        35.28        11.64        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 
       46.98        44.94        42.08        42.77         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 
       37.15        38.24        34.06         6.21        23.74        33.30 
TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 
       28.37        12.59        23.77        10.78         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 
       11.90        21.63        63.72        32.45        36.49        14.60 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7672 
       10.68        12.03        18.31        18.87        29.00        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G 
       12.66         3.22        15.95        15.32         9.44         4.44 
TCGA-44-A4SS TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 
        3.75        76.21        28.11        35.54        14.07        32.84 
TCGA-49-4507 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 TCGA-49-6761 
        8.81         5.16        55.89        15.02        17.13        11.64 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 
       20.48        71.47        14.96        25.81        31.04         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 
        9.27         8.78        77.88        21.47         8.45        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6592 TCGA-50-6595 TCGA-50-6673 
       29.00        25.12        42.31        25.51         6.21         0.72 
TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 
        8.38        34.26        30.54        13.94         9.21        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       48.62        45.17         2.86         0.07        32.61         0.79 
TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
       42.48        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6981 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
        5.46        45.34        60.03        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        0.59         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        1.02         0.16         1.08         0.69         3.02         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 
        1.41         0.85         0.13         1.55         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 
        2.17         7.07         1.41         0.72         0.95         0.36 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48Y 
        0.10         4.80         0.49         2.14         3.45         1.02 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8394 
        1.58         0.03         0.92         0.16         1.55         4.54 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O 
       39.95        42.38        14.60        77.10        47.47        47.77 
TCGA-62-A46P TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 
       19.53        72.30        39.22        40.93        29.92        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 
       20.65        39.09        55.40        37.02        38.33        87.98 
TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 
        2.04        28.41        51.25        28.44         0.99        20.02 
TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 
       18.84        14.04        12.66         5.69         4.60         6.64 
TCGA-69-7761 TCGA-69-7764 TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        6.12        13.61         7.56         2.30         2.93        12.56 
TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 
        2.50         4.21         7.04        23.38        29.95        26.27 
TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 TCGA-73-7499 TCGA-78-7143 
       15.35         4.27         1.32         5.39        17.06       163.10 
TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 
       27.16         5.65        20.58        35.93        21.86        39.48 
TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 
       19.50        38.50        32.09         5.88        40.11        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
        8.02        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
      208.60        39.72        77.59        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 
       12.36         0.36        20.71        13.87        19.43        16.70 
TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 
       24.49         0.33         0.43        10.92        15.65        15.85 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
        0.62         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.49        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28        10.62         1.97        10.16         2.60        13.71 
TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 
       12.23         7.36         1.15         6.44         5.69         1.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7567 
        1.45         7.17         9.76         4.18         6.08         5.36 
TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 
        0.69         1.32         4.04        63.52        43.76         5.95 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
        0.59         0.72         3.48         5.95         5.36         2.83 
TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        0.49         6.48         8.91        15.06         1.45         5.56 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        5.03         3.72         9.27         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY 
        3.81         0.20        20.42        86.14        58.45        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 
       37.35        86.04        58.85         5.49         5.29        41.59 
TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI 
       31.20        10.09        29.42        11.05         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A5C7 
       11.15        48.99 

  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
              0.07               0.03 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
             70.55             223.96 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
            14.040             12.295 
[1] "0.1 - 70.5 (14.0)"  "0.0 - 224.0 (12.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
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        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "12Q LOSS MUTATED"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED"   "12Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE"   "12Q LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" "12Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "12Q LOSS MUTATED" "12Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D64V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  12Q LOSS MUTATED         0       15       29         9        14         13
  12Q LOSS WILD-TYPE       3       98      102        35        51         52
                    vv
clus                 STAGE IIIB STAGE IV
  12Q LOSS MUTATED            1        4
  12Q LOSS WILD-TYPE         10       18
D64V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  12Q LOSS MUTATED    21  53   7   3
  12Q LOSS WILD-TYPE 120 202  32  15
D64V4, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  T1               21                120
  T2               53                202
  T3                7                 32
  T4                3                 15
                    vv
clus                  N0  N1 N2+N3
  12Q LOSS MUTATED    50  21    13
  12Q LOSS WILD-TYPE 240  64    57
D64V5, multiclass
       clus
vv      12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  N0                  50                240
  N1                  21                 64
  N2+N3               13                 57
                    vv
clus                  M0  M1 M1A M1B  MX
  12Q LOSS MUTATED    50   3   0   0  31
  12Q LOSS WILD-TYPE 264  15   1   3  84
D64V6, multiclass
D64V7, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED    57  28
  12Q LOSS WILD-TYPE 187 183
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED     57   28
  12Q LOSS WILD-TYPE  187  183
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  FEMALE               57                187
  MALE                 28                183
D64V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  12Q LOSS MUTATED                            1
  12Q LOSS WILD-TYPE                         12
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  12Q LOSS MUTATED                                  20
  12Q LOSS WILD-TYPE                                72
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  12Q LOSS MUTATED                                                   50
  12Q LOSS WILD-TYPE                                                242
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  12Q LOSS MUTATED                                            0
  12Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  12Q LOSS MUTATED                                               7
  12Q LOSS WILD-TYPE                                            10
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  12Q LOSS MUTATED                                1
  12Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  12Q LOSS MUTATED                                    0
  12Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  12Q LOSS MUTATED                              0                             4
  12Q LOSS WILD-TYPE                            2                            14
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  12Q LOSS MUTATED                                 0
  12Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  12Q LOSS MUTATED                                               1
  12Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  12Q LOSS MUTATED                              1
  12Q LOSS WILD-TYPE                            6
D64V9, multiclass
D64V10, binary
                    cls
clus                   0   1
  12Q LOSS MUTATED     2  83
  12Q LOSS WILD-TYPE  19 351
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  12Q LOSS MUTATED      2   83
  12Q LOSS WILD-TYPE   19  351
     clus
vv    12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  NO                 2                 19
  YES               83                351
D64V11, continuous
D64V12, continuous
                    vv
clus                  R0  R1  R2  RX
  12Q LOSS MUTATED    51   1   1   3
  12Q LOSS WILD-TYPE 261   9   3  15
D64V13, multiclass
    clus
vv   12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  R0               51                261
  R1                1                  9
  R2                1                  3
  RX                3                 15

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
D65V1, survival
                    sevent
clus2                  0   1
  13Q LOSS MUTATED   145  56
  13Q LOSS WILD-TYPE 156  62
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               201                218 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
                56                 62 
$`13Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 
        3.98        45.01        37.02        24.03        47.05         8.02 
TCGA-05-4405 TCGA-05-4417 TCGA-05-4420 TCGA-05-4424 TCGA-05-4425 TCGA-05-4430 
       20.05        14.93        29.95        30.02        21.99        25.02 
TCGA-05-4432 TCGA-05-5423 TCGA-05-5425 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
       25.02         4.96        28.96         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4628 TCGA-38-4629 TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 
       97.74        49.02        28.37        44.61        14.73        46.98 
TCGA-44-5643 TCGA-44-5644 TCGA-44-6147 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       33.30        28.37        27.78        32.45        36.49        16.41 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-8119 TCGA-44-8120 
        7.17        18.31        18.87        29.00         3.22         8.55 
TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F TCGA-44-A4SU TCGA-49-4487 TCGA-49-4501 
       15.95         9.44        11.08         2.50        28.11        46.72 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4512 TCGA-49-6743 
       14.07        32.84         8.81        29.46         5.16        12.13 
TCGA-49-6744 TCGA-49-6761 TCGA-50-5045 TCGA-50-5051 TCGA-50-5068 TCGA-50-5930 
       29.26        11.64        71.47        14.96        49.28         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5941 TCGA-50-5944 
        8.78        77.88        21.47         8.45        18.64        25.12 
TCGA-50-5946 TCGA-50-6593 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-53-A4EZ 
       22.55        11.05        33.37         8.38        13.94         9.21 
TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 TCGA-55-6642 TCGA-55-6712 TCGA-55-6971 
       48.62        45.17         2.86        32.61         0.79         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       48.49         3.88         5.46         2.20        45.34        32.71 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 TCGA-55-7576 TCGA-55-7815 
       40.54        71.05        38.47         0.13         1.32         1.78 
TCGA-55-7903 TCGA-55-7911 TCGA-55-7994 TCGA-55-8090 TCGA-55-8091 TCGA-55-8094 
        0.62         0.69         1.02         0.20         1.41         0.13 
TCGA-55-8207 TCGA-55-8301 TCGA-55-8302 TCGA-55-8510 TCGA-55-8511 TCGA-55-8514 
        2.17         1.41         0.72         7.46         0.30         6.97 
TCGA-55-8615 TCGA-55-8616 TCGA-55-A48Z TCGA-55-A493 TCGA-55-A4DG TCGA-62-8394 
        0.49         1.58         0.95         0.92         5.29         4.54 
TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46R TCGA-62-A46S 
       39.95        42.38        77.10        47.77        56.68        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       67.96        72.30        40.93        29.92        56.81        20.65 
TCGA-64-1679 TCGA-64-1681 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 
       55.40        38.33        28.41        51.25        28.44         0.99 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-69-7978 
       13.87         6.64         6.12        13.61         5.42         2.30 
TCGA-69-7979 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        2.93         4.21         7.04         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-7499 TCGA-78-7145 TCGA-78-7146 
       29.95        15.35         1.32        17.06        27.16         5.65 
TCGA-78-7147 TCGA-78-7154 TCGA-78-7155 TCGA-78-7160 TCGA-78-7161 TCGA-78-7539 
       19.27        19.50        38.50        22.29         7.04        10.75 
TCGA-78-8640 TCGA-78-8660 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
      208.60        10.55        27.06         0.36        20.71        13.87 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8055 TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 
       19.43        24.49         0.33        15.75        15.85         0.53 
TCGA-86-8358 TCGA-86-8359 TCGA-86-8668 TCGA-86-8669 TCGA-86-8673 TCGA-86-A456 
        0.62         0.85         1.45         1.08        14.93         0.33 
TCGA-86-A4D0 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        0.99        10.62        41.33        10.16         2.60        13.71 
TCGA-91-6840 TCGA-91-8499 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 
       12.23         1.18         6.08         1.12         5.36         4.34 
TCGA-97-7546 TCGA-97-7554 TCGA-97-8174 TCGA-97-8177 TCGA-97-A4M2 TCGA-99-7458 
       31.66        25.48         5.36         4.80         6.48        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L9-A443 TCGA-MP-A4SV 
        9.44         9.27         7.82         6.97         3.81        86.14 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T9 TCGA-MP-A4TC TCGA-MP-A4TD 
       37.35        86.04        58.85        41.59         2.43        10.09 
TCGA-MP-A4TF TCGA-MP-A4TI TCGA-MP-A4TK 
       11.05        14.10        19.13 

$`13Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4403 TCGA-05-4415 
       50.07        19.92        14.01         9.96        19.00         2.96 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 
        8.98        12.00        26.01        26.01        24.00        15.02 
TCGA-05-5420 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 
       15.02        22.03         0.99         2.04         0.46       120.79 
TCGA-38-4627 TCGA-38-4630 TCGA-38-4631 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       37.71        35.28        11.64        26.30         4.37        43.50 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 
       13.15        44.94        24.36        42.08        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 
        8.09        37.15        38.24        34.06         6.21        23.74 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 
       12.59        23.77        10.78         9.93        11.90        21.63 
TCGA-44-6775 TCGA-44-6776 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7671 
       23.18        63.72        14.60        10.68        12.03        17.59 
TCGA-44-7672 TCGA-44-8117 TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 
       23.64        12.66        15.32         4.44         3.75        76.21 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4514 TCGA-49-6742 TCGA-49-6745 
       28.57        12.66        35.54        55.89        15.02        17.13 
TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 TCGA-50-5932 
       20.48        70.55        25.81        31.04         8.05        35.87 
TCGA-50-5939 TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6594 
       15.12        29.00        42.31         3.88        25.51        12.16 
TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
        6.21         0.72        34.26        30.54        23.05        38.73 
TCGA-55-6543 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6979 TCGA-55-6983 
        0.07        42.48        40.70        15.25         7.76        60.03 
TCGA-55-6984 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 
       24.99         0.59         1.12         3.12         1.28         1.02 
TCGA-55-7727 TCGA-55-7728 TCGA-55-7907 TCGA-55-7910 TCGA-55-7914 TCGA-55-7995 
        1.02         0.79         0.53         6.48         0.10         0.16 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 
        1.08         0.69         3.02         0.85         1.55         0.49 
TCGA-55-8206 TCGA-55-8299 TCGA-55-8505 TCGA-55-8506 TCGA-55-8512 TCGA-55-8513 
        1.51         7.07         0.95         0.36         0.10         4.80 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 
        1.61         2.14         3.45         1.08         1.02         1.58 
TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8398 TCGA-62-8402 TCGA-62-A46P 
        0.03         0.16         1.55        14.60        47.47        19.53 
TCGA-62-A470 TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       39.22        39.09        37.02        87.98         2.04        42.90 
TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       20.02        18.84        14.04        12.66         5.69         4.60 
TCGA-69-7763 TCGA-69-7973 TCGA-69-7974 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
       22.68         7.56         6.05        12.56         3.25         2.50 
TCGA-73-4666 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 
       26.27         4.27         5.39         1.25        20.42       163.10 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7156 
       20.58        35.93        21.86        39.48        24.99        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
        5.88        40.11       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 
       26.53        31.20         8.02        53.33        28.96        10.55 
TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-86-6562 TCGA-86-7955 
       32.68        39.72        77.59       110.50        12.36        16.70 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 TCGA-86-8585 TCGA-86-8671 
        0.43         0.79        10.92        15.65         1.12         0.56 
TCGA-86-8672 TCGA-86-8674 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6830 TCGA-91-6847 
        0.49        13.28         0.43         1.28         1.97        27.68 
TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC 
        7.36         1.15        16.18         6.44         5.69         1.45 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        7.17         9.76         4.18         0.07         0.69         1.32 
TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7937 TCGA-97-7938 
        4.04        64.60        63.52        43.76         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M7 
        0.72         3.48         5.95         2.83         0.49         8.91 
TCGA-L4-A4E6 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SW 
        2.50         0.20         9.37        20.42        11.61        58.45 
TCGA-MP-A4SY TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TE TCGA-MP-A4TH 
       49.35         5.49         5.29        31.20        29.42         4.67 
TCGA-MP-A4TJ TCGA-MP-A5C7 
       11.15        48.99 

  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
              0.13               0.03 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
            208.60             223.96 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
             13.87              12.26 
[1] "0.1 - 208.6 (13.9)" "0.0 - 224.0 (12.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
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        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "13Q LOSS MUTATED"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED"   "13Q LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" "13Q LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"13Q LOSS WILD-TYPE"   "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "13Q LOSS MUTATED" "13Q LOSS WILD-TYPE" 
[1] "hr=" "1"  
D65V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  13Q LOSS MUTATED         2       47       63        21        38         31
  13Q LOSS WILD-TYPE       1       66       68        23        27         34
                    vv
clus                 STAGE IIIB STAGE IV
  13Q LOSS MUTATED            6       10
  13Q LOSS WILD-TYPE          5       12
D65V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  13Q LOSS MUTATED    59 128  21   9
  13Q LOSS WILD-TYPE  82 127  18   9
D65V4, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  T1               59                 82
  T2              128                127
  T3               21                 18
  T4                9                  9
                    vv
clus                  N0  N1 N2+N3
  13Q LOSS MUTATED   134  46    34
  13Q LOSS WILD-TYPE 156  39    36
D65V5, multiclass
       clus
vv      13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  N0                 134                156
  N1                  46                 39
  N2+N3               34                 36
                    vv
clus                  M0  M1 M1A M1B  MX
  13Q LOSS MUTATED   145   8   0   1  62
  13Q LOSS WILD-TYPE 169  10   1   2  53
D65V6, multiclass
D65V7, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED   118 100
  13Q LOSS WILD-TYPE 126 111
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED    118  100
  13Q LOSS WILD-TYPE  126  111
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  FEMALE              118                126
  MALE                100                111
D65V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  13Q LOSS MUTATED                            9
  13Q LOSS WILD-TYPE                          4
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  13Q LOSS MUTATED                                  44
  13Q LOSS WILD-TYPE                                48
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  13Q LOSS MUTATED                                                  142
  13Q LOSS WILD-TYPE                                                150
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  13Q LOSS MUTATED                                            1
  13Q LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  13Q LOSS MUTATED                                               8
  13Q LOSS WILD-TYPE                                             9
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  13Q LOSS MUTATED                                2
  13Q LOSS WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  13Q LOSS MUTATED                                    1
  13Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  13Q LOSS MUTATED                              0                             7
  13Q LOSS WILD-TYPE                            2                            11
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  13Q LOSS MUTATED                                 0
  13Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  13Q LOSS MUTATED                                               2
  13Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  13Q LOSS MUTATED                              2
  13Q LOSS WILD-TYPE                            5
D65V9, multiclass
D65V10, binary
                    cls
clus                   0   1
  13Q LOSS MUTATED     8 210
  13Q LOSS WILD-TYPE  13 224
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  13Q LOSS MUTATED      8  210
  13Q LOSS WILD-TYPE   13  224
     clus
vv    13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  NO                 8                 13
  YES              210                224
D65V11, continuous
D65V12, continuous
                    vv
clus                  R0  R1  R2  RX
  13Q LOSS MUTATED   149   7   2   9
  13Q LOSS WILD-TYPE 163   3   2   9
D65V13, multiclass
    clus
vv   13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  R0              149                163
  R1                7                  3
  R2                2                  2
  RX                9                  9

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
D66V1, survival
                    sevent
clus2                  0   1
  14Q LOSS MUTATED    69  24
  14Q LOSS WILD-TYPE 232  94
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                93                326 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
                24                 94 
$`14Q LOSS MUTATED`
TCGA-05-4396 TCGA-05-4398 TCGA-05-4405 TCGA-05-4418 TCGA-05-4420 TCGA-05-4427 
        9.96        47.05        20.05         8.98        29.95        26.01 
TCGA-05-5425 TCGA-38-4625 TCGA-38-4628 TCGA-38-4631 TCGA-38-4632 TCGA-44-2662 
       28.96        97.74        49.02        11.64        44.61        42.08 
TCGA-44-3398 TCGA-44-5643 TCGA-44-5644 TCGA-44-6145 TCGA-44-6146 TCGA-44-6775 
       38.24        33.30        28.37        10.78         9.93        23.18 
TCGA-44-7669 TCGA-44-7671 TCGA-44-8120 TCGA-44-A47F TCGA-44-A4SS TCGA-49-4507 
       18.87        17.59         8.55        11.08         3.75         8.81 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-50-5068 TCGA-50-5931 TCGA-50-5936 
       29.46        55.89        15.02        49.28         8.78         8.45 
TCGA-50-6593 TCGA-50-6597 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-7281 
       11.05        33.37        23.05        48.62        45.17         0.59 
TCGA-55-7283 TCGA-55-7727 TCGA-55-8092 TCGA-55-8094 TCGA-55-8097 TCGA-55-8505 
        1.12         1.02         0.85         0.13         0.49         0.95 
TCGA-55-8514 TCGA-55-A492 TCGA-62-8398 TCGA-62-A46O TCGA-62-A46S TCGA-62-A46U 
        6.97         0.03        14.60        47.77        54.35        67.96 
TCGA-62-A471 TCGA-64-1680 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-3774 
       40.93        37.02        42.90        28.41        51.25        12.66 
TCGA-67-6217 TCGA-69-7761 TCGA-69-7765 TCGA-69-7980 TCGA-69-A59K TCGA-73-4662 
       13.87         6.12         5.42        12.56         7.04        29.95 
TCGA-73-4675 TCGA-78-7146 TCGA-78-7150 TCGA-78-7535 TCGA-78-8640 TCGA-86-7711 
        1.32         5.65        21.86        31.20       208.60        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 TCGA-86-8279 TCGA-86-8359 TCGA-86-8669 
       13.87        19.43        24.49        15.85         0.85         1.08 
TCGA-86-8672 TCGA-91-6830 TCGA-91-6848 TCGA-93-7347 TCGA-95-7039 TCGA-95-7567 
        0.49         1.97         7.36         9.76         1.12         5.36 
TCGA-95-7944 TCGA-95-7948 TCGA-97-7547 TCGA-97-8174 TCGA-97-8177 TCGA-99-8025 
        0.69         4.34        64.60         5.36         4.80        14.04 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-MN-A4N1 TCGA-MP-A4SW 
        1.45         5.56         9.44         7.82         9.37        58.45 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TC 
        5.49         5.29         2.43 

$`14Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 TCGA-05-4422 
       24.03         8.02        19.00         2.96        14.93        12.00 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 
       30.02        21.99        26.01        25.02        25.02        24.00 
TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02        15.02         4.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 
        0.46         7.36         5.95         8.68       120.79        37.71 
TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       28.37        35.28        14.73        26.30         4.37        43.50 
TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 
       46.98        13.15        44.94        24.36        42.77         3.19 
TCGA-44-2668 TCGA-44-3396 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 
        8.09        37.15        34.06         6.21        23.74        12.59 
TCGA-44-6144 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-6777 
       23.77        27.78        11.90        21.63        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A479 
       18.31        29.00        23.64        12.66         3.22        15.95 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
       15.32         9.44         4.44         2.50        76.21        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 
       28.57        12.66        35.54        46.72        14.07        32.84 
TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 
        5.16        12.13        29.26        17.13        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 
       71.47        70.55        14.96        25.81        31.04         8.05 
TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        9.27        35.87        77.88        21.47        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7626 
       12.16         6.21         0.72         8.38        34.26        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       13.94         9.21        38.73         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 
        0.79        42.48        40.70        15.25         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
        3.88         5.46         7.76         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 
       60.03        24.99        40.54        71.05        38.47         0.13 
TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 
        3.12         1.32         1.28         1.02         0.79         1.78 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        0.62         0.53         6.48         0.69         0.10         1.02 
TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 
        0.16         1.08         0.69         3.02         0.20         1.41 
TCGA-55-8096 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        1.55         1.51         2.17         7.07         1.41         0.72 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 
        0.36         7.46         0.30         0.10         4.80         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        0.95         1.58         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46P 
        4.54        39.95        42.38        77.10        47.47        19.53 
TCGA-62-A46R TCGA-62-A46V TCGA-62-A470 TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 
       56.68        72.30        39.22        29.92        56.81        20.65 
TCGA-64-1678 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5815 
       39.09        55.40        38.33        87.98         2.04        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-6215 TCGA-67-6216 
        0.99        20.02        18.84        14.04         5.69         4.60 
TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
        6.64        22.68        13.61         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.93         3.25         2.50         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
       23.38        26.27        15.35         4.27         5.39         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 
       20.42        17.06       163.10        27.16        19.27        20.58 
TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       35.93        39.48        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
        5.88        40.11        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7536 TCGA-78-7537 TCGA-78-7539 
        8.48        88.11        26.53         8.02        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 
       28.96        10.55        32.68        39.72        77.59        10.55 
TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7955 TCGA-86-8055 
      110.50        27.06        12.36         0.36        16.70         0.33 
TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 
        0.43         0.79        15.75        10.92        15.65         0.53 
TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 
        0.62         1.12         1.45         0.56        14.93        13.28 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 
        0.33         0.99         0.43         1.28        10.62        41.33 
TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6849 
       10.16         2.60        13.71        12.23        27.68         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD 
       16.18         6.44         5.69         1.18         1.45         7.17 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 
        4.18         6.08         0.07         1.32         4.04        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       63.52        43.76        25.48         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 
        3.48         5.95         2.83         0.49         6.48         8.91 
TCGA-99-7458 TCGA-99-8028 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AE TCGA-L4-A4E5 
       12.89        15.06         5.03         3.72         9.27         6.97 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV 
        2.50         3.81         0.20        20.42        11.61        86.14 
TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T9 TCGA-MP-A4TA 
       49.35        37.35        86.04        58.85        41.59        31.20 
TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ 
       10.09        29.42        11.05         4.67        14.10        11.15 
TCGA-MP-A4TK TCGA-MP-A5C7 
       19.13        48.99 

  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
              0.03               0.07 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            208.60             223.96 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
            12.560             12.775 
[1] "0.0 - 208.6 (12.6)" "0.1 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
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        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "14Q LOSS MUTATED"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" "14Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED"   "14Q LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE"   "14Q LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"14Q LOSS WILD-TYPE" "14Q LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D66V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  14Q LOSS MUTATED         1       18       28        11        18         19
  14Q LOSS WILD-TYPE       2       95      103        33        47         46
                    vv
clus                 STAGE IIIB STAGE IV
  14Q LOSS MUTATED            2        6
  14Q LOSS WILD-TYPE          9       16
D66V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  14Q LOSS MUTATED    25  62  11   4
  14Q LOSS WILD-TYPE 116 193  28  14
D66V4, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  T1               25                116
  T2               62                193
  T3               11                 28
  T4                4                 14
                    vv
clus                  N0  N1 N2+N3
  14Q LOSS MUTATED    57  27    18
  14Q LOSS WILD-TYPE 233  58    52
D66V5, multiclass
       clus
vv      14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  N0                  57                233
  N1                  27                 58
  N2+N3               18                 52
                    vv
clus                  M0  M1 M1A M1B  MX
  14Q LOSS MUTATED    76   4   0   1  21
  14Q LOSS WILD-TYPE 238  14   1   2  94
D66V6, multiclass
D66V7, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED    50  53
  14Q LOSS WILD-TYPE 194 158
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED     50   53
  14Q LOSS WILD-TYPE  194  158
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  FEMALE               50                194
  MALE                 53                158
D66V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  14Q LOSS MUTATED                            3
  14Q LOSS WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  14Q LOSS MUTATED                                  22
  14Q LOSS WILD-TYPE                                70
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  14Q LOSS MUTATED                                                   66
  14Q LOSS WILD-TYPE                                                226
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  14Q LOSS MUTATED                                            0
  14Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  14Q LOSS MUTATED                                               3
  14Q LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  14Q LOSS MUTATED                                1
  14Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  14Q LOSS MUTATED                                    0
  14Q LOSS WILD-TYPE                                  3
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  14Q LOSS MUTATED                              1                             4
  14Q LOSS WILD-TYPE                            1                            14
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  14Q LOSS MUTATED                                 0
  14Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  14Q LOSS MUTATED                                               0
  14Q LOSS WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  14Q LOSS MUTATED                              3
  14Q LOSS WILD-TYPE                            4
D66V9, multiclass
D66V10, binary
                    cls
clus                   0   1
  14Q LOSS MUTATED     4  99
  14Q LOSS WILD-TYPE  17 335
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  14Q LOSS MUTATED      4   99
  14Q LOSS WILD-TYPE   17  335
     clus
vv    14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  NO                 4                 17
  YES               99                335
D66V11, continuous
D66V12, continuous
                    vv
clus                  R0  R1  R2  RX
  14Q LOSS MUTATED    74   0   0   5
  14Q LOSS WILD-TYPE 238  10   4  13
D66V13, multiclass
    clus
vv   14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  R0               74                238
  R1                0                 10
  R2                0                  4
  RX                5                 13

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
D67V1, survival
                    sevent
clus2                  0   1
  15Q LOSS MUTATED   140  54
  15Q LOSS WILD-TYPE 161  64
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               194                225 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
                54                 64 
$`15Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4398 TCGA-05-4402 TCGA-05-4417 TCGA-05-4424 
       50.07        19.92        47.05         8.02        14.93        30.02 
TCGA-05-4430 TCGA-05-4432 TCGA-05-5425 TCGA-05-5428 TCGA-35-4122 TCGA-35-4123 
       25.02        25.02        28.96        22.03         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 TCGA-38-4628 TCGA-38-4630 TCGA-38-4631 
        8.68        97.74        37.71        49.02        35.28        11.64 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2668 
       14.73        46.98        13.15        44.94        42.08         8.09 
TCGA-44-3918 TCGA-44-3919 TCGA-44-6144 TCGA-44-6147 TCGA-44-6774 TCGA-44-6775 
       34.06         6.21        23.77        27.78        21.63        23.18 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       32.45        36.49        10.68        12.03         7.17        18.31 
TCGA-44-7670 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-A47F TCGA-49-4487 
       29.00        23.64        12.66         3.22        11.08        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4510 TCGA-49-4514 TCGA-49-6744 
       28.57        12.66        46.72        29.46        55.89        29.26 
TCGA-49-6761 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5066 TCGA-50-5933 
       11.64        71.47        70.55        14.96        31.04        77.88 
TCGA-50-5935 TCGA-50-5941 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 TCGA-50-6593 
       21.47        18.64        22.55         3.88        25.51        11.05 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-5899 
       13.94         9.21        23.05        48.62        45.17         2.86 
TCGA-55-6642 TCGA-55-6969 TCGA-55-6971 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 
       32.61        40.70         0.92         2.20        45.34        32.71 
TCGA-55-6983 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 TCGA-55-7727 
       60.03         0.59         1.12         3.12         1.32         1.02 
TCGA-55-7815 TCGA-55-7903 TCGA-55-7914 TCGA-55-7994 TCGA-55-8089 TCGA-55-8091 
        1.78         0.62         0.10         1.02         3.02         1.41 
TCGA-55-8094 TCGA-55-8301 TCGA-55-8510 TCGA-55-8511 TCGA-55-8615 TCGA-55-8616 
        0.13         1.41         7.46         0.30         0.49         1.58 
TCGA-55-8620 TCGA-55-A48X TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A4DF 
        2.14         1.08         0.95         1.58         0.92         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8397 TCGA-62-A46R TCGA-62-A46S TCGA-62-A472 
        5.29         4.54        42.38        56.68        54.35        29.92 
TCGA-64-1676 TCGA-64-1679 TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 
       56.81        55.40        38.33        87.98        42.90        28.41 
TCGA-67-3770 TCGA-67-3772 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
        0.99        18.84         5.42         7.56         6.05         2.30 
TCGA-69-7979 TCGA-69-A59K TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.93         7.04        23.38        29.95        26.27        15.35 
TCGA-73-4675 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7147 
        1.32        17.06       163.10        27.16         5.65        19.27 
TCGA-78-7153 TCGA-78-7158 TCGA-78-7159 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
       24.99         5.88        40.11        88.11        31.20         8.02 
TCGA-78-7542 TCGA-78-8640 TCGA-86-6562 TCGA-86-7701 TCGA-86-8073 TCGA-86-8074 
       10.55       208.60        12.36         0.36         0.43         0.79 
TCGA-86-8075 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 TCGA-86-8669 TCGA-86-A456 
       15.75        15.85         0.62         0.85         1.08         0.33 
TCGA-86-A4D0 TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        0.99        10.62        41.33        10.16         2.60        13.71 
TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-8499 TCGA-91-A4BC TCGA-93-7347 
       12.23        27.68         7.36         1.18         1.45         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7554 
        4.18         6.08         1.12         5.36        31.66        25.48 
TCGA-97-7937 TCGA-97-8172 TCGA-97-8177 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        5.95         5.95         4.80        12.89        14.04        15.06 
TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L9-A443 TCGA-L9-A444 
        5.03         9.44         7.82         6.97         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T2 TCGA-MP-A4T4 
        9.37        20.42        86.14        58.45        37.35        86.04 
TCGA-MP-A4T8 TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TI 
        5.29         2.43        10.09        29.42        11.05        14.10 
TCGA-MP-A4TJ TCGA-MP-A4TK 
       11.15        19.13 

$`15Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
        3.98        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 
       19.00        20.05         2.96         8.98        29.95        12.00 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       21.99        26.01        26.01        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 TCGA-38-4629 
        4.96         0.99         2.04         0.46       120.79        28.37 
TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2661 TCGA-44-2665 
       44.61        26.30         4.37        43.50        24.36        42.77 
TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
        3.19        37.15        38.24        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6145 TCGA-44-6146 TCGA-44-6148 TCGA-44-6776 TCGA-44-6779 
       12.59        10.78         9.93        11.90        63.72        16.41 
TCGA-44-7659 TCGA-44-7669 TCGA-44-7671 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A 
       14.60        18.87        17.59         8.55        15.95        15.32 
TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4494 
        9.44         4.44         3.75         2.50        76.21        35.54 
TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       14.07        32.84         8.81         5.16        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5055 TCGA-50-5068 TCGA-50-5072 TCGA-50-5930 
       17.13        20.48        25.81        49.28         8.05         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5936 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
        8.78        35.87         8.45        15.12        29.00        25.12 
TCGA-50-6590 TCGA-53-7624 TCGA-55-1594 TCGA-55-6543 TCGA-55-6712 TCGA-55-6968 
       42.31        34.26        38.73         0.07         0.79        42.48 
TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6984 
       15.25        48.49         3.88         5.46         7.76        24.99 
TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 TCGA-55-7725 TCGA-55-7726 
       40.54        71.05        38.47         0.13         1.28         1.02 
TCGA-55-7728 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7995 TCGA-55-8085 
        0.79         0.53         6.48         0.69         0.16         1.08 
TCGA-55-8087 TCGA-55-8090 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 
        0.69         0.20         0.85         1.55         0.49         1.51 
TCGA-55-8207 TCGA-55-8299 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8512 
        2.17         7.07         0.72         0.95         0.36         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48Y TCGA-55-A492 
        4.80         6.97         1.61         3.45         1.02         0.03 
TCGA-55-A494 TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O 
        0.16        39.95        14.60        77.10        47.47        47.77 
TCGA-62-A46P TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-64-1677 
       19.53        67.96        72.30        39.22        40.93        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 
       39.09        37.02         2.04        51.25        28.44        20.02 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
       14.04        12.66         5.69         4.60        13.87         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        6.12        22.68        13.61        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 
        4.21         2.01        52.57         4.27         5.39         1.25 
TCGA-73-7498 TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 
       20.42        20.58        35.93        21.86        39.48        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09        22.29         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
        8.48        26.53        53.33        10.75        28.96        32.68 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-7711 
       39.72        77.59        10.55       110.50        27.06        20.71 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8076 
       13.87        19.43        16.70        24.49         0.33        10.92 
TCGA-86-8278 TCGA-86-8280 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 TCGA-86-8672 
       15.65         0.53         1.12         1.45         0.56         0.49 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6830 TCGA-91-6849 
       14.93        13.28         0.43         1.28         1.97         1.15 
TCGA-91-7771 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BD TCGA-95-7043 TCGA-95-7944 
       16.18         6.44         5.69         7.17         0.07         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.34         4.04        64.60        63.52        43.76 
TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8175 TCGA-97-8179 
        0.59         0.72         3.48         5.36         2.83         0.49 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8194 TCGA-J2-A4AE 
        6.48         8.91         1.45         5.56         3.72         9.27 
TCGA-L4-A4E6 TCGA-MN-A4N5 TCGA-MP-A4SY TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 
        2.50        11.61        49.35        58.85         5.49        41.59 
TCGA-MP-A4TA TCGA-MP-A4TH TCGA-MP-A5C7 
       31.20         4.67        48.99 

  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
              0.10               0.03 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
            208.60             223.96 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
             12.66              12.66 
[1] "0.1 - 208.6 (12.7)" "0.0 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
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        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"15Q LOSS WILD-TYPE" "15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "15Q LOSS MUTATED"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"15Q LOSS WILD-TYPE"   "15Q LOSS MUTATED"   "15Q LOSS MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "15Q LOSS MUTATED" "15Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D67V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  15Q LOSS MUTATED         2       50       66        23        25         32
  15Q LOSS WILD-TYPE       1       63       65        21        40         33
                    vv
clus                 STAGE IIIB STAGE IV
  15Q LOSS MUTATED            6       10
  15Q LOSS WILD-TYPE          5       12
D67V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  15Q LOSS MUTATED    68 120  18   8
  15Q LOSS WILD-TYPE  73 135  21  10
D67V4, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  T1               68                 73
  T2              120                135
  T3               18                 21
  T4                8                 10
                    vv
clus                  N0  N1 N2+N3
  15Q LOSS MUTATED   134  39    36
  15Q LOSS WILD-TYPE 156  46    34
D67V5, multiclass
       clus
vv      15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  N0                 134                156
  N1                  39                 46
  N2+N3               36                 34
                    vv
clus                  M0  M1 M1A M1B  MX
  15Q LOSS MUTATED   147   7   0   2  57
  15Q LOSS WILD-TYPE 167  11   1   1  58
D67V6, multiclass
D67V7, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED   118  96
  15Q LOSS WILD-TYPE 126 115
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED    118   96
  15Q LOSS WILD-TYPE  126  115
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  FEMALE              118                126
  MALE                 96                115
D67V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  15Q LOSS MUTATED                            5
  15Q LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  15Q LOSS MUTATED                                  32
  15Q LOSS WILD-TYPE                                60
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  15Q LOSS MUTATED                                                  153
  15Q LOSS WILD-TYPE                                                139
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  15Q LOSS MUTATED                                            0
  15Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  15Q LOSS MUTATED                                               9
  15Q LOSS WILD-TYPE                                             8
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  15Q LOSS MUTATED                                1
  15Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  15Q LOSS MUTATED                                    3
  15Q LOSS WILD-TYPE                                  0
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  15Q LOSS MUTATED                              0                             7
  15Q LOSS WILD-TYPE                            2                            11
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  15Q LOSS MUTATED                                 1
  15Q LOSS WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  15Q LOSS MUTATED                                               1
  15Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  15Q LOSS MUTATED                              2
  15Q LOSS WILD-TYPE                            5
D67V9, multiclass
D67V10, binary
                    cls
clus                   0   1
  15Q LOSS MUTATED    11 203
  15Q LOSS WILD-TYPE  10 231
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  15Q LOSS MUTATED     11  203
  15Q LOSS WILD-TYPE   10  231
     clus
vv    15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  NO                11                 10
  YES              203                231
D67V11, continuous
D67V12, continuous
                    vv
clus                  R0  R1  R2  RX
  15Q LOSS MUTATED   145   6   2  10
  15Q LOSS WILD-TYPE 167   4   2   8
D67V13, multiclass
    clus
vv   15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  R0              145                167
  R1                6                  4
  R2                2                  2
  RX               10                  8

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
D68V1, survival
                    sevent
clus2                  0   1
  16P LOSS MUTATED    63  28
  16P LOSS WILD-TYPE 238  90
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                91                328 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
                28                 90 
$`16P LOSS MUTATED`
TCGA-05-4389 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4418 
       45.01         9.96        47.05         8.02         2.96         8.98 
TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-35-4122 TCGA-44-3918 TCGA-44-5643 
       29.95        30.02        26.01         7.36        34.06        33.30 
TCGA-44-6777 TCGA-44-7660 TCGA-44-7661 TCGA-44-8117 TCGA-44-8119 TCGA-49-4488 
       32.45        10.68        12.03        12.66         3.22        28.57 
TCGA-49-4494 TCGA-49-4510 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-49-6761 
       35.54        29.46        15.02        12.13        17.13        11.64 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5936 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 
       31.04        49.28         8.45        22.55         3.88        11.05 
TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-5899 TCGA-55-6968 TCGA-55-6971 
       34.26        13.94         9.21         2.86        42.48         0.92 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6986 TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 
        5.46         7.76        71.05         1.32         1.02         0.62 
TCGA-55-7914 TCGA-55-8094 TCGA-55-8505 TCGA-55-8506 TCGA-55-8616 TCGA-62-8394 
        0.10         0.13         0.95         0.36         1.58         4.54 
TCGA-62-8397 TCGA-62-8402 TCGA-62-A46U TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 
       42.38        47.47        67.96        72.30        39.22        40.93 
TCGA-62-A472 TCGA-64-1677 TCGA-64-5779 TCGA-67-3770 TCGA-67-3771 TCGA-69-7763 
       29.92        20.65        28.41         0.99        20.02        22.68 
TCGA-69-7974 TCGA-69-8255 TCGA-69-A59K TCGA-73-4662 TCGA-78-7143 TCGA-78-7146 
        6.05         4.21         7.04        29.95       163.10         5.65 
TCGA-78-7149 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-83-5908 TCGA-86-7953 
       35.93        88.11        31.20         8.02        27.06        19.43 
TCGA-86-8054 TCGA-86-8073 TCGA-86-8672 TCGA-91-6829 TCGA-91-6831 TCGA-91-6847 
       24.49         0.43         0.49        41.33        10.16        27.68 
TCGA-91-7771 TCGA-91-8499 TCGA-95-7567 TCGA-97-7554 TCGA-97-7937 TCGA-97-8171 
       16.18         1.18         5.36        25.48         5.95         3.48 
TCGA-L4-A4E5 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MP-A4T8 TCGA-MP-A4TF 
        6.97         3.81         0.20         9.37         5.29        11.05 
TCGA-MP-A4TI 
       14.10 

$`16P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4397 
       50.07         3.98        19.92        14.01        37.02        24.03 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 
       19.00        20.05        14.93        12.00        21.99        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 
       25.02        25.02        24.00        15.02        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4123 
       28.96        22.03         0.99         2.04         0.46         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61        14.73        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       43.50        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 
       42.77         3.19         8.09        37.15        38.24         6.21 
TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        28.37        12.59        23.77        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6778 
       27.78        11.90        21.63        23.18        63.72        36.49 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       16.41        14.60         7.17        18.31        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       17.59        23.64         8.55        15.95        15.32         9.44 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
       11.08         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       12.66        46.72        14.07        32.84         8.81         5.16 
TCGA-49-4514 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       55.89        29.26        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 
       25.81         8.05         9.27         8.78        35.87        77.88 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 
       21.47        15.12        18.64        29.00        25.12        42.31 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 
       25.51        12.16         6.21        33.37         0.72         8.38 
TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 
       30.54        23.05        38.73        48.62        45.17         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 
       32.61         0.79        40.70        15.25        48.49         3.88 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 
        2.20        45.34        32.71        60.03        24.99        40.54 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       38.47         0.59         1.12         0.13         3.12         1.28 
TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        1.02         0.79         1.78         0.53         6.48         0.69 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 
        1.02         0.16         1.08         0.69         3.02         0.20 
TCGA-55-8091 TCGA-55-8092 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        1.41         0.85         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 
        7.07         1.41         0.72         7.46         0.30         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         6.97         0.49         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 
        1.08         1.02         0.95         1.58         0.03         0.92 
TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 
        0.16         1.55         5.29        39.95        14.60        77.10 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-64-1676 TCGA-64-1678 
       47.77        19.53        56.68        54.35        56.81        39.09 
TCGA-64-1679 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 
       55.40        37.02        38.33        87.98         2.04        42.90 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       51.25        28.44        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        4.60        13.87         6.64         6.12        13.61         5.42 
TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        7.56         2.30         2.93        12.56         3.25         2.50 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.01        52.57        23.38        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 
        1.32         5.39         1.25        20.42        17.06        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       19.27        20.58        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 
      104.15       223.96         8.48        26.53        53.33        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 
       28.96        10.55        32.68       208.60        39.72        77.59 
TCGA-78-8660 TCGA-78-8662 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 
       10.55       110.50        12.36         0.36        20.71        13.87 
TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
       16.70         0.33         0.79        15.75        10.92        15.65 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       15.85         0.53         0.62         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 
        1.08         0.56        14.93        13.28         0.33         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 
        0.43         1.28        10.62         1.97         2.60        13.71 
TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC 
       12.23         7.36         1.15         6.44         5.69         1.45 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        7.17         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 
        0.69         1.32         4.34         4.04        31.66        64.60 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
       63.52        43.76         0.59         0.72         5.95         5.36 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        2.83         4.80         0.49         6.48         8.91        12.89 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
       14.04        15.06         1.45         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-MN-A4N4 TCGA-MN-A4N5 
        9.44         9.27         7.82         2.50        20.42        11.61 
TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 
       86.14        58.45        49.35        37.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE 
        5.49        41.59        31.20         2.43        10.09        29.42 
TCGA-MP-A4TH TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        11.15        19.13        48.99 

  16P LOSS MUTATED 16P LOSS WILD-TYPE 
              0.10               0.03 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            163.10             223.96 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
            12.130             12.775 
[1] "0.1 - 163.1 (12.1)" "0.0 - 224.0 (12.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "16P LOSS MUTATED"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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  "16P LOSS MUTATED" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
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"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "16P LOSS MUTATED" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "16P LOSS MUTATED"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE"   "16P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16P LOSS WILD-TYPE"   "16P LOSS MUTATED" "16P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16P LOSS WILD-TYPE" "16P LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D68V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  16P LOSS MUTATED         1       20       23         7        17         20
  16P LOSS WILD-TYPE       2       93      108        37        48         45
                    vv
clus                 STAGE IIIB STAGE IV
  16P LOSS MUTATED            6        6
  16P LOSS WILD-TYPE          5       16
D68V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16P LOSS MUTATED    28  55  11   6
  16P LOSS WILD-TYPE 113 200  28  12
D68V4, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  T1               28                113
  T2               55                200
  T3               11                 28
  T4                6                 12
                    vv
clus                  N0  N1 N2+N3
  16P LOSS MUTATED    58  16    24
  16P LOSS WILD-TYPE 232  69    46
D68V5, multiclass
       clus
vv      16P LOSS MUTATED 16P LOSS WILD-TYPE
  N0                  58                232
  N1                  16                 69
  N2+N3               24                 46
                    vv
clus                  M0  M1 M1A M1B  MX
  16P LOSS MUTATED    65   5   1   1  28
  16P LOSS WILD-TYPE 249  13   0   2  87
D68V6, multiclass
D68V7, binary
                    cls
clus                   0   1
  16P LOSS MUTATED    50  50
  16P LOSS WILD-TYPE 194 161
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED     50   50
  16P LOSS WILD-TYPE  194  161
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  FEMALE               50                194
  MALE                 50                161
D68V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16P LOSS MUTATED                            4
  16P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16P LOSS MUTATED                                  24
  16P LOSS WILD-TYPE                                68
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16P LOSS MUTATED                                                   59
  16P LOSS WILD-TYPE                                                233
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16P LOSS MUTATED                                            0
  16P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16P LOSS MUTATED                                               5
  16P LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16P LOSS MUTATED                                1
  16P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16P LOSS MUTATED                                    1
  16P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16P LOSS MUTATED                              0                             3
  16P LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  16P LOSS MUTATED                                 0
  16P LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16P LOSS MUTATED                                               1
  16P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16P LOSS MUTATED                              2
  16P LOSS WILD-TYPE                            5
D68V9, multiclass
D68V10, binary
                    cls
clus                   0   1
  16P LOSS MUTATED     5  95
  16P LOSS WILD-TYPE  16 339
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16P LOSS MUTATED      5   95
  16P LOSS WILD-TYPE   16  339
     clus
vv    16P LOSS MUTATED 16P LOSS WILD-TYPE
  NO                 5                 16
  YES               95                339
D68V11, continuous
D68V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16P LOSS MUTATED    66   1   1   2
  16P LOSS WILD-TYPE 246   9   3  16
D68V13, multiclass
    clus
vv   16P LOSS MUTATED 16P LOSS WILD-TYPE
  R0               66                246
  R1                1                  9
  R2                1                  3
  RX                2                 16

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
D69V1, survival
                    sevent
clus2                  0   1
  16Q LOSS MUTATED    86  33
  16Q LOSS WILD-TYPE 215  85
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               119                300 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
                33                 85 
$`16Q LOSS MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 
       45.01        37.02        47.05         8.02        20.05         2.96 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4427 TCGA-05-4432 TCGA-05-5428 
        8.98        29.95        30.02        26.01        25.02        22.03 
TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4628 TCGA-44-2661 TCGA-44-3918 
        7.36         5.95        97.74        49.02        24.36        34.06 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6777 TCGA-44-7660 
        6.21        23.74        33.30        28.37        32.45        10.68 
TCGA-44-7661 TCGA-44-7669 TCGA-44-8117 TCGA-44-8119 TCGA-44-A47B TCGA-49-4488 
       12.03        18.87        12.66         3.22         9.44        28.57 
TCGA-49-4494 TCGA-49-4510 TCGA-49-6742 TCGA-49-6743 TCGA-49-6745 TCGA-49-6761 
       35.54        29.46        15.02        12.13        17.13        11.64 
TCGA-50-5049 TCGA-50-5066 TCGA-50-5068 TCGA-50-5936 TCGA-50-5946 TCGA-50-6591 
       70.55        31.04        49.28         8.45        22.55         3.88 
TCGA-50-6593 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-5899 
       11.05        34.26        13.94         9.21        48.62         2.86 
TCGA-55-6968 TCGA-55-6971 TCGA-55-6978 TCGA-55-6979 TCGA-55-6986 TCGA-55-7281 
       42.48         0.92         5.46         7.76        71.05         0.59 
TCGA-55-7576 TCGA-55-7727 TCGA-55-7903 TCGA-55-8505 TCGA-55-8506 TCGA-55-8616 
        1.32         1.02         0.62         0.95         0.36         1.58 
TCGA-55-8620 TCGA-55-A48Z TCGA-55-A493 TCGA-62-8394 TCGA-62-8397 TCGA-62-A46O 
        2.14         0.95         0.92         4.54        42.38        47.77 
TCGA-62-A46U TCGA-62-A470 TCGA-62-A472 TCGA-64-1677 TCGA-64-5774 TCGA-64-5778 
       67.96        39.22        29.92        20.65        87.98        42.90 
TCGA-67-3770 TCGA-67-3771 TCGA-69-7763 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
        0.99        20.02        22.68         6.05         2.30         2.93 
TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4662 TCGA-78-7143 TCGA-78-7146 
        4.21         7.04        52.57        29.95       163.10         5.65 
TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7159 TCGA-78-7167 TCGA-78-7535 
       35.93        21.86        39.48        40.11        88.11        31.20 
TCGA-78-7536 TCGA-83-5908 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 TCGA-86-8054 
        8.02        27.06        20.71        13.87        19.43        24.49 
TCGA-86-8073 TCGA-86-8075 TCGA-86-8359 TCGA-86-8672 TCGA-91-6829 TCGA-91-6831 
        0.43        15.75         0.85         0.49        41.33        10.16 
TCGA-91-6847 TCGA-91-7771 TCGA-91-8499 TCGA-93-7348 TCGA-95-7567 TCGA-97-7546 
       27.68        16.18         1.18         4.18         5.36        31.66 
TCGA-97-7554 TCGA-97-7937 TCGA-97-8171 TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L9-A443 
       25.48         5.95         3.48         7.82         6.97         3.81 
TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MP-A4T8 TCGA-MP-A4TC TCGA-MP-A4TI 
        0.20         9.37         5.29         2.43        14.10 

$`16Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4396 TCGA-05-4397 
       50.07         3.98        19.92        14.01         9.96        24.03 
TCGA-05-4403 TCGA-05-4417 TCGA-05-4422 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 
       19.00        14.93        12.00        21.99        26.01        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02        15.02         4.96        28.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 
        2.04         0.46         8.68       120.79        37.71        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61        14.73        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 TCGA-44-2665 
       43.50        46.98        13.15        44.94        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-5645 TCGA-44-6144 
        3.19         8.09        37.15        38.24        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90        21.63        23.18 
TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7662 TCGA-44-7667 
       63.72        36.49        16.41        14.60         7.17        18.31 
TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47A 
       29.00        17.59        23.64         8.55        15.95        15.32 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 
       11.08         4.44         3.75         2.50        76.21        28.11 
TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4512 
       12.66        46.72        14.07        32.84         8.81         5.16 
TCGA-49-4514 TCGA-49-6744 TCGA-50-5044 TCGA-50-5045 TCGA-50-5051 TCGA-50-5055 
       55.89        29.26        20.48        71.47        14.96        25.81 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
        8.05         9.27         8.78        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6592 
       15.12        18.64        29.00        25.12        42.31        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        30.54 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       23.05        38.73        45.17         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6972 TCGA-55-6975 TCGA-55-6980 TCGA-55-6981 
       40.70        15.25        48.49         3.88         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6987 TCGA-55-7283 
       32.71        60.03        24.99        40.54        38.47         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7815 
        0.13         3.12         1.28         1.02         0.79         1.78 
TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 
        0.53         6.48         0.69         0.10         1.02         0.16 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 
        1.08         0.69         3.02         0.20         1.41         0.85 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.13         1.55         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        1.41         0.72         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        6.97         0.49         1.61         3.45         1.08         1.02 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 
        1.58         0.03         0.16         1.55         5.29        39.95 
TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S 
       14.60        77.10        47.47        19.53        56.68        54.35 
TCGA-62-A46V TCGA-62-A471 TCGA-64-1676 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       72.30        40.93        56.81        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-64-5815 TCGA-67-3772 
       38.33         2.04        28.41        51.25        28.44        18.84 
TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
       14.04        12.66         5.69         4.60        13.87         6.64 
TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7980 TCGA-69-8253 
        6.12        13.61         5.42         7.56        12.56         3.25 
TCGA-69-8254 TCGA-71-6725 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 
        2.50         2.01        23.38        26.27        15.35         4.27 
TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7145 
        1.32         5.39         1.25        20.42        17.06        27.16 
TCGA-78-7147 TCGA-78-7148 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 
       19.27        20.58        24.99        19.50        38.50        32.09 
TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       26.53        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-86-6562 
      208.60        39.72        77.59        10.55       110.50        12.36 
TCGA-86-7701 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8076 TCGA-86-8278 
        0.36        16.70         0.33         0.79        10.92        15.65 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
       15.85         0.53         0.62         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.56        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 
        1.28        10.62         1.97         2.60        13.71        12.23 
TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-A4BC TCGA-91-A4BD 
        7.36         1.15         6.44         5.69         1.45         7.17 
TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 
        9.76         6.08         1.12         0.07         0.69         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7938 
        4.34         4.04        64.60        63.52        43.76         0.59 
TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 
        0.72         5.95         5.36         2.83         4.80         0.49 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 
        6.48         8.91        12.89        14.04        15.06         1.45 
TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E6 
        5.56         5.03         3.72         9.44         9.27         2.50 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
       20.42        11.61        86.14        58.45        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD 
       86.04        58.85         5.49        41.59        31.20        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       29.42        11.05         4.67        11.15        19.13        48.99 

  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
              0.20               0.03 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            163.10             223.96 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
            15.020             12.295 
[1] "0.2 - 163.1 (15.0)" "0.0 - 224.0 (12.3)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
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        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED"   "16Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "16Q LOSS MUTATED"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"16Q LOSS WILD-TYPE"   "16Q LOSS MUTATED" "16Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"16Q LOSS WILD-TYPE" "16Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D69V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  16Q LOSS MUTATED         1       30       35         9        20         20
  16Q LOSS WILD-TYPE       2       83       96        35        45         45
                    vv
clus                 STAGE IIIB STAGE IV
  16Q LOSS MUTATED            6        6
  16Q LOSS WILD-TYPE          5       16
D69V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  16Q LOSS MUTATED    41  70  11   5
  16Q LOSS WILD-TYPE 100 185  28  13
D69V4, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  T1               41                100
  T2               70                185
  T3               11                 28
  T4                5                 13
                    vv
clus                  N0  N1 N2+N3
  16Q LOSS MUTATED    77  22    25
  16Q LOSS WILD-TYPE 213  63    45
D69V5, multiclass
       clus
vv      16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  N0                  77                213
  N1                  22                 63
  N2+N3               25                 45
                    vv
clus                  M0  M1 M1A M1B  MX
  16Q LOSS MUTATED    87   5   1   1  32
  16Q LOSS WILD-TYPE 227  13   0   2  83
D69V6, multiclass
D69V7, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED    64  63
  16Q LOSS WILD-TYPE 180 148
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED     64   63
  16Q LOSS WILD-TYPE  180  148
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  FEMALE               64                180
  MALE                 63                148
D69V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  16Q LOSS MUTATED                            5
  16Q LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  16Q LOSS MUTATED                                  29
  16Q LOSS WILD-TYPE                                63
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  16Q LOSS MUTATED                                                   78
  16Q LOSS WILD-TYPE                                                214
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  16Q LOSS MUTATED                                            0
  16Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  16Q LOSS MUTATED                                               6
  16Q LOSS WILD-TYPE                                            11
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  16Q LOSS MUTATED                                2
  16Q LOSS WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  16Q LOSS MUTATED                                    1
  16Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  16Q LOSS MUTATED                              0                             3
  16Q LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  16Q LOSS MUTATED                                 0
  16Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  16Q LOSS MUTATED                                               1
  16Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  16Q LOSS MUTATED                              2
  16Q LOSS WILD-TYPE                            5
D69V9, multiclass
D69V10, binary
                    cls
clus                   0   1
  16Q LOSS MUTATED     5 122
  16Q LOSS WILD-TYPE  16 312
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  16Q LOSS MUTATED      5  122
  16Q LOSS WILD-TYPE   16  312
     clus
vv    16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  NO                 5                 16
  YES              122                312
D69V11, continuous
D69V12, continuous
                    vv
clus                  R0  R1  R2  RX
  16Q LOSS MUTATED    87   1   1   2
  16Q LOSS WILD-TYPE 225   9   3  16
D69V13, multiclass
    clus
vv   16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  R0               87                225
  R1                1                  9
  R2                1                  3
  RX                2                 16

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
D70V1, survival
                    sevent
clus2                  0   1
  17P LOSS MUTATED   125  49
  17P LOSS WILD-TYPE 176  69
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               174                245 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
                49                 69 
$`17P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 TCGA-05-4402 TCGA-05-4420 
       50.07        45.01         9.96        24.03         8.02        29.95 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-5420 
       21.99        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5428 TCGA-05-5429 TCGA-35-4122 TCGA-35-4123 TCGA-38-4625 TCGA-38-4631 
       22.03         0.99         7.36         5.95        97.74        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2662 
       44.61        14.73        46.98        13.15        44.94        42.08 
TCGA-44-2665 TCGA-44-3919 TCGA-44-5643 TCGA-44-6144 TCGA-44-6775 TCGA-44-6779 
       42.77         6.21        33.30        23.77        23.18        16.41 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7670 TCGA-44-8117 TCGA-44-8119 
       10.68        12.03         7.17        29.00        12.66         3.22 
TCGA-44-8120 TCGA-44-A47B TCGA-49-4488 TCGA-49-4490 TCGA-49-4505 TCGA-49-4507 
        8.55         9.44        28.57        12.66        14.07         8.81 
TCGA-49-4510 TCGA-49-4512 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       29.46         5.16        12.13        29.26        17.13        11.64 
TCGA-50-5051 TCGA-50-5068 TCGA-50-5931 TCGA-50-5936 TCGA-50-5941 TCGA-50-5944 
       14.96        49.28         8.78         8.45        18.64        25.12 
TCGA-50-6591 TCGA-50-6594 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
        3.88        12.16        33.37         0.72         8.38        34.26 
TCGA-53-7626 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-6712 
       30.54        13.94        23.05        38.73        45.17         0.79 
TCGA-55-6968 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6981 TCGA-55-6982 
       42.48        48.49         3.88         5.46        45.34        32.71 
TCGA-55-6984 TCGA-55-6985 TCGA-55-7281 TCGA-55-7573 TCGA-55-7576 TCGA-55-7726 
       24.99        40.54         0.59         0.13         1.32         1.02 
TCGA-55-7727 TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        1.02         0.62         6.48         0.69         0.10         1.02 
TCGA-55-8089 TCGA-55-8091 TCGA-55-8092 TCGA-55-8097 TCGA-55-8510 TCGA-55-8511 
        3.02         1.41         0.85         0.49         7.46         0.30 
TCGA-55-8514 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-62-8397 TCGA-62-A46O 
        6.97         1.08         1.02         0.95        42.38        47.77 
TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A472 TCGA-64-1676 TCGA-64-1679 
       56.68        54.35        67.96        29.92        56.81        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3773 
       38.33        87.98        28.44         0.99        20.02        14.04 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7764 TCGA-69-7765 
        5.69        13.87         6.64         6.12        13.61         5.42 
TCGA-69-7974 TCGA-69-7978 TCGA-69-8255 TCGA-69-A59K TCGA-73-4658 TCGA-73-4659 
        6.05         2.30         4.21         7.04        52.57        23.38 
TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7150 TCGA-78-7159 
       17.06       163.10        27.16         5.65        21.86        40.11 
TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-8640 
       31.20         8.02        10.75        28.96        10.55       208.60 
TCGA-78-8655 TCGA-86-7701 TCGA-86-7711 TCGA-86-7953 TCGA-86-8054 TCGA-86-8073 
       77.59         0.36        20.71        19.43        24.49         0.43 
TCGA-86-8075 TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 
       15.75        15.65        15.85         0.53         0.62         1.45 
TCGA-91-6831 TCGA-91-6840 TCGA-91-6847 TCGA-91-7771 TCGA-93-7347 TCGA-95-7039 
       10.16        12.23        27.68        16.18         9.76         1.12 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7554 
        5.36         0.69         1.32         4.34         4.04        25.48 
TCGA-97-7937 TCGA-97-7938 TCGA-97-8175 TCGA-99-7458 TCGA-99-8025 TCGA-99-8033 
        5.95         0.59         2.83        12.89        14.04         5.56 
TCGA-J2-8192 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-MN-A4N4 TCGA-MP-A4T4 
        5.03         9.44         9.27         6.97        20.42        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A5C7 
       58.85         5.29        10.09        29.42        11.05        48.99 

$`17P LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4390 TCGA-05-4398 TCGA-05-4403 
        3.98        19.92        14.01        37.02        47.05        19.00 
TCGA-05-4405 TCGA-05-4415 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 
       20.05         2.96        14.93         8.98        12.00        30.02 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5715 TCGA-35-3615 
       25.02        15.02         4.96        28.96         2.04         0.46 
TCGA-35-5375 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
        8.68       120.79        37.71        49.02        28.37        35.28 
TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 
       26.30         4.37        43.50        24.36         3.19         8.09 
TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 
       37.15        38.24        34.06        23.74        28.37        12.59 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 
       10.78         9.93        27.78        11.90        21.63        63.72 
TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7667 TCGA-44-7669 TCGA-44-7671 
       32.45        36.49        14.60        18.31        18.87        17.59 
TCGA-44-7672 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       23.64        15.95        15.32        11.08         4.44         3.75 
TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
        2.50        76.21        28.11        35.54        46.72        32.84 
TCGA-49-4514 TCGA-49-6742 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       55.89        15.02        20.48        71.47        70.55        25.81 
TCGA-50-5066 TCGA-50-5072 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       31.04         8.05         9.27        35.87        77.88        21.47 
TCGA-50-5939 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6592 TCGA-50-6593 
       15.12        29.00        22.55        42.31        25.51        11.05 
TCGA-50-6595 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
        6.21         9.21        48.62         2.86         0.07        32.61 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6979 TCGA-55-6980 TCGA-55-6983 
       40.70        15.25         0.92         7.76         2.20        60.03 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7283 TCGA-55-7574 TCGA-55-7725 TCGA-55-7728 
       71.05        38.47         1.12         3.12         1.28         0.79 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8090 
        1.78         0.53         0.16         1.08         0.69         0.20 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 
        0.13         1.55         1.51         2.17         7.07         1.41 
TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8512 TCGA-55-8513 TCGA-55-8615 
        0.72         0.95         0.36         0.10         4.80         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A490 TCGA-55-A492 
        1.58         1.61         2.14         3.45         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 
        0.92         0.16         1.55         5.29         4.54        39.95 
TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46P TCGA-62-A46V TCGA-62-A470 
       14.60        77.10        47.47        19.53        72.30        39.22 
TCGA-62-A471 TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5778 
       40.93        20.65        39.09        37.02         2.04        42.90 
TCGA-64-5779 TCGA-64-5781 TCGA-67-3772 TCGA-67-3774 TCGA-67-6216 TCGA-69-7763 
       28.41        51.25        18.84        12.66         4.60        22.68 
TCGA-69-7973 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-71-6725 
        7.56         2.93        12.56         3.25         2.50         2.01 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
        1.25        20.42        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 
       24.99        19.50        38.50        32.09         5.88        22.29 
TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 
        7.04       104.15       223.96         8.48        88.11        26.53 
TCGA-78-7537 TCGA-78-7633 TCGA-78-8648 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
       53.33        32.68        39.72        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7713 TCGA-86-7955 TCGA-86-8055 TCGA-86-8074 TCGA-86-8076 
       12.36        13.87        16.70         0.33         0.79        10.92 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 
        0.85         1.12         1.08         0.56         0.49        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       13.28         0.33         0.99         0.43         1.28        10.62 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 TCGA-91-6836 TCGA-91-6848 TCGA-91-6849 
       41.33         1.97         2.60        13.71         7.36         1.15 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7348 
        6.44         5.69         1.18         1.45         7.17         4.18 
TCGA-93-8067 TCGA-95-7043 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        6.08         0.07        31.66        64.60        63.52        43.76 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 
        0.72         3.48         5.95         5.36         4.80         0.49 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AG 
        6.48         8.91        15.06         1.45         3.72         7.82 
TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SV 
        2.50         3.81         0.20         9.37        11.61        86.14 
TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA 
       58.45        49.35        37.35         5.49        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
        2.43         4.67        14.10        11.15        19.13 

  17P LOSS MUTATED 17P LOSS WILD-TYPE 
              0.10               0.03 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
            208.60             223.96 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
             13.02              12.56 
[1] "0.1 - 208.6 (13.0)" "0.0 - 224.0 (12.6)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
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  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "17P LOSS MUTATED"   "17P LOSS MUTATED" "17P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "17P LOSS MUTATED" "17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
  "17P LOSS MUTATED"   "17P LOSS MUTATED"   "17P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" "17P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"17P LOSS WILD-TYPE"   "17P LOSS MUTATED" 
[1] "hr=" "1"  
D70V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  17P LOSS MUTATED         2       37       56        21        30         32
  17P LOSS WILD-TYPE       1       76       75        23        35         33
                    vv
clus                 STAGE IIIB STAGE IV
  17P LOSS MUTATED            4        9
  17P LOSS WILD-TYPE          7       13
D70V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17P LOSS MUTATED    52 115  16   7
  17P LOSS WILD-TYPE  89 140  23  11
D70V4, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  T1               52                 89
  T2              115                140
  T3               16                 23
  T4                7                 11
                    vv
clus                  N0  N1 N2+N3
  17P LOSS MUTATED   118  38    31
  17P LOSS WILD-TYPE 172  47    39
D70V5, multiclass
       clus
vv      17P LOSS MUTATED 17P LOSS WILD-TYPE
  N0                 118                172
  N1                  38                 47
  N2+N3               31                 39
                    vv
clus                  M0  M1 M1A M1B  MX
  17P LOSS MUTATED   135   9   0   0  46
  17P LOSS WILD-TYPE 179   9   1   3  69
D70V6, multiclass
D70V7, binary
                    cls
clus                   0   1
  17P LOSS MUTATED   110  81
  17P LOSS WILD-TYPE 134 130
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED    110   81
  17P LOSS WILD-TYPE  134  130
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  FEMALE              110                134
  MALE                 81                130
D70V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17P LOSS MUTATED                            4
  17P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17P LOSS MUTATED                                  37
  17P LOSS WILD-TYPE                                55
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17P LOSS MUTATED                                                  132
  17P LOSS WILD-TYPE                                                160
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17P LOSS MUTATED                                            2
  17P LOSS WILD-TYPE                                          2
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17P LOSS MUTATED                                               7
  17P LOSS WILD-TYPE                                            10
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17P LOSS MUTATED                                1
  17P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17P LOSS MUTATED                                    2
  17P LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17P LOSS MUTATED                              0                             3
  17P LOSS WILD-TYPE                            2                            15
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  17P LOSS MUTATED                                 0
  17P LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17P LOSS MUTATED                                               2
  17P LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17P LOSS MUTATED                              1
  17P LOSS WILD-TYPE                            6
D70V9, multiclass
D70V10, binary
                    cls
clus                   0   1
  17P LOSS MUTATED     4 187
  17P LOSS WILD-TYPE  17 247
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17P LOSS MUTATED      4  187
  17P LOSS WILD-TYPE   17  247
     clus
vv    17P LOSS MUTATED 17P LOSS WILD-TYPE
  NO                 4                 17
  YES              187                247
D70V11, continuous
D70V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17P LOSS MUTATED   134   4   1   7
  17P LOSS WILD-TYPE 178   6   3  11
D70V13, multiclass
    clus
vv   17P LOSS MUTATED 17P LOSS WILD-TYPE
  R0              134                178
  R1                4                  6
  R2                1                  3
  RX                7                 11

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
D71V1, survival
                    sevent
clus2                  0   1
  17Q LOSS MUTATED    30  15
  17Q LOSS WILD-TYPE 271 103
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                45                374 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                15                103 
$`17Q LOSS MUTATED`
TCGA-05-4396 TCGA-35-4122 TCGA-38-4631 TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 
        9.96         7.36        11.64        14.73        46.98        13.15 
TCGA-44-2662 TCGA-44-2665 TCGA-44-7660 TCGA-49-4488 TCGA-49-4505 TCGA-49-4507 
       42.08        42.77        10.68        28.57        14.07         8.81 
TCGA-49-4512 TCGA-49-6761 TCGA-50-5051 TCGA-50-5068 TCGA-50-5936 TCGA-53-7624 
        5.16        11.64        14.96        49.28         8.45        34.26 
TCGA-55-1596 TCGA-55-6712 TCGA-55-6975 TCGA-55-7576 TCGA-55-8091 TCGA-55-8092 
       45.17         0.79         3.88         1.32         1.41         0.85 
TCGA-55-8511 TCGA-62-8397 TCGA-64-1676 TCGA-67-6217 TCGA-69-7764 TCGA-69-A59K 
        0.30        42.38        56.81        13.87        13.61         7.04 
TCGA-78-7146 TCGA-78-7535 TCGA-78-7536 TCGA-78-8655 TCGA-86-7701 TCGA-86-8280 
        5.65        31.20         8.02        77.59         0.36         0.53 
TCGA-91-6840 TCGA-91-7771 TCGA-95-7948 TCGA-95-A4VK TCGA-J2-8192 TCGA-J2-A4AD 
       12.23        16.18         4.34         4.04         5.03         9.44 
TCGA-L4-A4E5 TCGA-MP-A4T6 TCGA-MP-A5C7 
        6.97        58.85        48.99 

$`17Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
       24.03        47.05         8.02        19.00        20.05         2.96 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 
       14.93         8.98        29.95        12.00        30.02        21.99 
TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 
       26.01        26.01        25.02        25.02        24.00        15.02 
TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5428 TCGA-05-5429 TCGA-05-5715 
       15.02         4.96        28.96        22.03         0.99         2.04 
TCGA-35-3615 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 
        0.46         5.95         8.68        97.74       120.79        37.71 
TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F 
       49.02        28.37        35.28        44.61        26.30         4.37 
TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       43.50        44.94        24.36         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 
       38.24        34.06         6.21        23.74        33.30        28.37 
TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 
       12.59        23.77        10.78         9.93        27.78        11.90 
TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 
       21.63        23.18        63.72        32.45        36.49        16.41 
TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       14.60        12.03         7.17        18.31        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
       17.59        23.64        12.66         3.22         8.55        15.95 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS TCGA-44-A4SU 
       15.32         9.44        11.08         4.44         3.75         2.50 
TCGA-49-4486 TCGA-49-4487 TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 
       76.21        28.11        12.66        35.54        46.72        32.84 
TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 
       29.46        55.89        15.02        12.13        29.26        17.13 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5072 
       20.48        71.47        70.55        25.81        31.04         8.05 
TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        9.27         8.78        35.87        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 
       18.64        29.00        25.12        22.55        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 
       25.51        11.05        12.16         6.21        33.37         0.72 
TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1594 
        8.38        30.54        13.94         9.21        23.05        38.73 
TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6968 TCGA-55-6969 
       48.62         2.86         0.07        32.61        42.48        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 
       15.25         0.92        48.49         5.46         7.76         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 
       45.34        32.71        60.03        24.99        40.54        71.05 
TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 
       38.47         0.59         1.12         0.13         3.12         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 
        6.48         0.69         0.10         1.02         0.16         1.08 
TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 
        0.69         3.02         0.20         0.13         1.55         0.49 
TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 
        1.51         2.17         7.07         1.41         0.72         0.95 
TCGA-55-8506 TCGA-55-8510 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        0.36         7.46         0.10         4.80         6.97         0.49 
TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        1.58         1.61         2.14         3.45         1.08         1.02 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF 
        0.95         1.58         0.03         0.92         0.16         1.55 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 
        5.29         4.54        39.95        14.60        77.10        47.47 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A46V 
       47.77        19.53        56.68        54.35        67.96        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       39.22        40.93        29.92        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 
       37.02        38.33        87.98         2.04        42.90        28.41 
TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 
       51.25        28.44         0.99        20.02        18.84        14.04 
TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 
       12.66         5.69         4.60         6.64         6.12        22.68 
TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 
        5.42         7.56         6.05         2.30         2.93        12.56 
TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 
        3.25         2.50         4.21         2.01        52.57        23.38 
TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-73-4676 
       29.95        26.27        15.35         4.27         1.32         5.39 
TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        1.25        20.42        17.06       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 
      104.15       223.96         8.48        88.11        26.53        53.33 
TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 
       10.75        28.96        10.55        32.68       208.60        39.72 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 TCGA-86-7713 
       10.55       110.50        27.06        12.36        20.71        13.87 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
       19.43        16.70        24.49         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 
       15.75        10.92        15.65        15.85         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 
        1.12         1.45         1.08         0.56         0.49        14.93 
TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 
       13.28         0.33         0.99         0.43         1.28        10.62 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 TCGA-91-6847 
       41.33         1.97        10.16         2.60        13.71        27.68 
TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC 
        7.36         1.15         6.44         5.69         1.18         1.45 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        7.17         9.76         4.18         6.08         1.12         0.07 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        5.36         0.69         1.32        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 
       43.76        25.48         5.95         0.59         0.72         3.48 
TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        5.95         5.36         2.83         4.80         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        8.91        12.89        14.04        15.06         1.45         5.56 
TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        3.72         9.27         7.82         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY 
        9.37        20.42        11.61        86.14        58.45        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       37.35        86.04         5.49         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI 
        2.43        10.09        29.42        11.05         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A4TK 
       11.15        19.13 

  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
              0.30               0.03 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
             77.59             223.96 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
            11.640             13.085 
[1] "0.3 - 77.6 (11.6)"  "0.0 - 224.0 (13.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED"   "17Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "17Q LOSS MUTATED"   "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
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        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "17Q LOSS MUTATED" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" "17Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"17Q LOSS WILD-TYPE"   "17Q LOSS MUTATED" 
[1] "hr=" "1.3"
D71V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  17Q LOSS MUTATED         1        7       13         5        10         11
  17Q LOSS WILD-TYPE       2      106      118        39        55         54
                    vv
clus                 STAGE IIIB STAGE IV
  17Q LOSS MUTATED            2        2
  17Q LOSS WILD-TYPE          9       20
D71V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  17Q LOSS MUTATED    10  33   6   2
  17Q LOSS WILD-TYPE 131 222  33  16
D71V4, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  T1               10                131
  T2               33                222
  T3                6                 33
  T4                2                 16
                    vv
clus                  N0  N1 N2+N3
  17Q LOSS MUTATED    28  11    11
  17Q LOSS WILD-TYPE 262  74    59
D71V5, multiclass
       clus
vv      17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  N0                  28                262
  N1                  11                 74
  N2+N3               11                 59
                    vv
clus                  M0  M1 M1A M1B  MX
  17Q LOSS MUTATED    35   2   0   0  13
  17Q LOSS WILD-TYPE 279  16   1   3 102
D71V6, multiclass
D71V7, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED    29  22
  17Q LOSS WILD-TYPE 215 189
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED     29   22
  17Q LOSS WILD-TYPE  215  189
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  FEMALE               29                215
  MALE                 22                189
D71V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  17Q LOSS MUTATED                            0
  17Q LOSS WILD-TYPE                         13
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  17Q LOSS MUTATED                                  10
  17Q LOSS WILD-TYPE                                82
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  17Q LOSS MUTATED                                                   38
  17Q LOSS WILD-TYPE                                                254
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  17Q LOSS MUTATED                                            0
  17Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  17Q LOSS MUTATED                                               1
  17Q LOSS WILD-TYPE                                            16
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  17Q LOSS MUTATED                                0
  17Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  17Q LOSS MUTATED                                    1
  17Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  17Q LOSS MUTATED                              0                             0
  17Q LOSS WILD-TYPE                            2                            18
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  17Q LOSS MUTATED                                 0
  17Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  17Q LOSS MUTATED                                               0
  17Q LOSS WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  17Q LOSS MUTATED                              1
  17Q LOSS WILD-TYPE                            6
D71V9, multiclass
D71V10, binary
                    cls
clus                   0   1
  17Q LOSS MUTATED     2  49
  17Q LOSS WILD-TYPE  19 385
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  17Q LOSS MUTATED      2   49
  17Q LOSS WILD-TYPE   19  385
     clus
vv    17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  NO                 2                 19
  YES               49                385
D71V11, continuous
D71V12, continuous
                    vv
clus                  R0  R1  R2  RX
  17Q LOSS MUTATED    37   2   0   1
  17Q LOSS WILD-TYPE 275   8   4  17
D71V13, multiclass
    clus
vv   17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  R0               37                275
  R1                2                  8
  R2                0                  4
  RX                1                 17

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
D72V1, survival
                    sevent
clus2                  0   1
  18P LOSS MUTATED    98  42
  18P LOSS WILD-TYPE 203  76
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               140                279 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
                42                 76 
$`18P LOSS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4390 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 
       50.07         3.98        37.02        47.05         8.02        20.05 
TCGA-05-4417 TCGA-05-4418 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4434 
       14.93         8.98        21.99        26.01        26.01        15.02 
TCGA-05-5425 TCGA-05-5715 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4627 
       28.96         2.04         5.95         8.68        97.74        37.71 
TCGA-38-4628 TCGA-38-4631 TCGA-38-4632 TCGA-44-2656 TCGA-44-2665 TCGA-44-3918 
       49.02        11.64        44.61        46.98        42.77        34.06 
TCGA-44-6145 TCGA-44-6775 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7667 
       10.78        23.18        32.45        36.49        16.41        18.31 
TCGA-44-7669 TCGA-44-A479 TCGA-44-A47F TCGA-44-A4SU TCGA-49-4488 TCGA-49-4490 
       18.87        15.95        11.08         2.50        28.57        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4512 TCGA-49-6742 TCGA-49-6743 
       46.72        14.07        32.84         5.16        15.02        12.13 
TCGA-50-5072 TCGA-50-5933 TCGA-50-5936 TCGA-50-5941 TCGA-50-5946 TCGA-50-6597 
        8.05        77.88         8.45        18.64        22.55        33.37 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 TCGA-55-6968 TCGA-55-6971 
       34.26        30.54        38.73        45.17        42.48         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6979 TCGA-55-6985 TCGA-55-7281 TCGA-55-7283 
       48.49         3.88         7.76        40.54         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7726 TCGA-55-7728 TCGA-55-7910 
        0.13         3.12         1.32         1.02         0.79         6.48 
TCGA-55-8087 TCGA-55-8090 TCGA-55-8091 TCGA-55-8097 TCGA-55-8207 TCGA-55-8616 
        0.69         0.20         1.41         0.49         2.17         1.58 
TCGA-55-8620 TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-62-8394 
        2.14         0.95         1.58         0.03         0.92         4.54 
TCGA-62-8397 TCGA-62-A46O TCGA-62-A46S TCGA-62-A470 TCGA-62-A471 TCGA-62-A472 
       42.38        47.77        54.35        39.22        40.93        29.92 
TCGA-64-1679 TCGA-64-5781 TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 
       55.40        51.25        28.44         0.99        20.02        18.84 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7765 TCGA-69-7979 TCGA-69-A59K TCGA-71-6725 
        4.60        13.87         5.42         2.93         7.04         2.01 
TCGA-73-4666 TCGA-73-4670 TCGA-73-7499 TCGA-78-7146 TCGA-78-7150 TCGA-78-7161 
       26.27         4.27        17.06         5.65        21.86         7.04 
TCGA-78-7167 TCGA-78-7535 TCGA-78-8660 TCGA-83-5908 TCGA-86-7701 TCGA-86-8073 
       88.11        31.20        10.55        27.06         0.36         0.43 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8672 TCGA-91-6830 
       15.65        15.85         0.53         0.62         0.49         1.97 
TCGA-91-6836 TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-91-A4BD TCGA-93-7348 
       13.71        27.68         7.36        16.18         7.17         4.18 
TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-97-7547 TCGA-97-7552 TCGA-97-7937 
        1.12         5.36         4.34        64.60        63.52         5.95 
TCGA-97-7941 TCGA-97-8174 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        0.72         5.36         5.03         3.72         9.44         9.27 
TCGA-L4-A4E5 TCGA-MP-A4SW TCGA-MP-A4T2 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4TF 
        6.97        58.45        37.35        58.85         5.49        11.05 
TCGA-MP-A4TI TCGA-MP-A4TJ 
       14.10        11.15 

$`18P LOSS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4397 TCGA-05-4403 
       19.92        14.01        45.01         9.96        24.03        19.00 
TCGA-05-4415 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4430 TCGA-05-4432 
        2.96        29.95        12.00        30.02        25.02        25.02 
TCGA-05-4433 TCGA-05-5420 TCGA-05-5423 TCGA-05-5428 TCGA-05-5429 TCGA-35-3615 
       24.00        15.02         4.96        22.03         0.99         0.46 
TCGA-35-4122 TCGA-38-4626 TCGA-38-4629 TCGA-38-4630 TCGA-38-6178 TCGA-38-7271 
        7.36       120.79        28.37        35.28        14.73        26.30 
TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
        4.37        43.50        13.15        44.94        24.36        42.08 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        38.24         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6146 TCGA-44-6147 
       33.30        28.37        12.59        23.77         9.93        27.78 
TCGA-44-6148 TCGA-44-6774 TCGA-44-6776 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       11.90        21.63        63.72        14.60        10.68        12.03 
TCGA-44-7662 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 
        7.17        29.00        17.59        23.64        12.66         3.22 
TCGA-44-8120 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 
        8.55        15.32         9.44         4.44         3.75        76.21 
TCGA-49-4487 TCGA-49-4494 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6744 
       28.11        35.54         8.81        29.46        55.89        29.26 
TCGA-49-6745 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 
       17.13        11.64        20.48        71.47        70.55        14.96 
TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 
       25.81        31.04        49.28         9.27         8.78        35.87 
TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 TCGA-50-6590 TCGA-50-6591 
       21.47        15.12        29.00        25.12        42.31         3.88 
TCGA-50-6592 TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
       25.51        11.05        12.16         6.21         0.72         8.38 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       13.94         9.21        23.05        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6978 TCGA-55-6980 
       32.61         0.79        40.70        15.25         5.46         2.20 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 
       45.34        32.71        60.03        24.99        71.05        38.47 
TCGA-55-7725 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 
        1.28         1.02         1.78         0.62         0.53         0.69 
TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8089 TCGA-55-8092 
        0.10         1.02         0.16         1.08         3.02         0.85 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        0.13         1.55         1.51         7.07         1.41         0.72 
TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        0.95         0.36         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        6.97         0.49         1.61         3.45         1.08         1.02 
TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 
        0.16         1.55         5.29        39.95        14.60        77.10 
TCGA-62-8402 TCGA-62-A46P TCGA-62-A46R TCGA-62-A46U TCGA-62-A46V TCGA-64-1676 
       47.47        19.53        56.68        67.96        72.30        56.81 
TCGA-64-1677 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 
       20.65        39.09        37.02        38.33        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-69-7760 
       42.90        28.41        14.04        12.66         5.69         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 TCGA-69-7978 
        6.12        22.68        13.61         7.56         6.05         2.30 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 TCGA-73-4659 
       12.56         3.25         2.50         4.21        52.57        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       29.95        15.35         1.32         5.39         1.25        20.42 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 
      163.10        27.16        19.27        20.58        35.93        39.48 
TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 
       24.99        19.50        38.50        32.09         5.88        40.11 
TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 
       22.29       104.15       223.96         8.48        26.53         8.02 
TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 
       53.33        10.75        28.96        10.55        32.68       208.60 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-86-6562 TCGA-86-7711 TCGA-86-7713 
       39.72        77.59       110.50        12.36        20.71        13.87 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8074 TCGA-86-8075 
       19.43        16.70        24.49         0.33         0.79        15.75 
TCGA-86-8076 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 
       10.92         0.85         1.12         1.45         1.08         0.56 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 
       14.93        13.28         0.33         0.99         0.43         1.28 
TCGA-91-6828 TCGA-91-6829 TCGA-91-6831 TCGA-91-6835 TCGA-91-6840 TCGA-91-6849 
       10.62        41.33        10.16         2.60        12.23         1.15 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-93-7347 TCGA-93-8067 
        6.44         5.69         1.18         1.45         9.76         6.08 
TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7553 
        0.07         0.69         1.32         4.04        31.66        43.76 
TCGA-97-7554 TCGA-97-7938 TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 TCGA-97-8177 
       25.48         0.59         3.48         5.95         2.83         4.80 
TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        0.49         6.48         8.91        12.89        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 
        1.45         5.56         7.82         2.50         3.81         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T4 
        9.37        20.42        11.61        86.14        49.35        86.04 
TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE 
        5.29        41.59        31.20         2.43        10.09        29.42 
TCGA-MP-A4TH TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        19.13        48.99 

  18P LOSS MUTATED 18P LOSS WILD-TYPE 
              0.03               0.07 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
             97.74             223.96 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
            12.395             12.660 
[1] "0.0 - 97.7 (12.4)"  "0.1 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
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"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "18P LOSS MUTATED"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "18P LOSS MUTATED" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "18P LOSS MUTATED"   "18P LOSS MUTATED" "18P LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE"   "18P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"18P LOSS WILD-TYPE"   "18P LOSS MUTATED"   "18P LOSS MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"18P LOSS WILD-TYPE" "18P LOSS WILD-TYPE" 
[1] "hr=" "1.2"
D72V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  18P LOSS MUTATED         1       26       48        17        28         18
  18P LOSS WILD-TYPE       2       87       83        27        37         47
                    vv
clus                 STAGE IIIB STAGE IV
  18P LOSS MUTATED            5       12
  18P LOSS WILD-TYPE          6       10
D72V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18P LOSS MUTATED    40  95  14   6
  18P LOSS WILD-TYPE 101 160  25  12
D72V4, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  T1               40                101
  T2               95                160
  T3               14                 25
  T4                6                 12
                    vv
clus                  N0  N1 N2+N3
  18P LOSS MUTATED    96  35    22
  18P LOSS WILD-TYPE 194  50    48
D72V5, multiclass
       clus
vv      18P LOSS MUTATED 18P LOSS WILD-TYPE
  N0                  96                194
  N1                  35                 50
  N2+N3               22                 48
                    vv
clus                  M0  M1 M1A M1B  MX
  18P LOSS MUTATED    96  11   0   1  47
  18P LOSS WILD-TYPE 218   7   1   2  68
D72V6, multiclass
D72V7, binary
                    cls
clus                   0   1
  18P LOSS MUTATED    97  58
  18P LOSS WILD-TYPE 147 153
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED     97   58
  18P LOSS WILD-TYPE  147  153
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  FEMALE               97                147
  MALE                 58                153
D72V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18P LOSS MUTATED                            4
  18P LOSS WILD-TYPE                          9
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18P LOSS MUTATED                                  31
  18P LOSS WILD-TYPE                                61
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18P LOSS MUTATED                                                  102
  18P LOSS WILD-TYPE                                                190
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18P LOSS MUTATED                                            1
  18P LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18P LOSS MUTATED                                               4
  18P LOSS WILD-TYPE                                            13
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18P LOSS MUTATED                                1
  18P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18P LOSS MUTATED                                    2
  18P LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18P LOSS MUTATED                              0                             6
  18P LOSS WILD-TYPE                            2                            12
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  18P LOSS MUTATED                                 1
  18P LOSS WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18P LOSS MUTATED                                               0
  18P LOSS WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18P LOSS MUTATED                              3
  18P LOSS WILD-TYPE                            4
D72V9, multiclass
D72V10, binary
                    cls
clus                   0   1
  18P LOSS MUTATED     5 150
  18P LOSS WILD-TYPE  16 284
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18P LOSS MUTATED      5  150
  18P LOSS WILD-TYPE   16  284
     clus
vv    18P LOSS MUTATED 18P LOSS WILD-TYPE
  NO                 5                 16
  YES              150                284
D72V11, continuous
D72V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18P LOSS MUTATED   105   5   3   4
  18P LOSS WILD-TYPE 207   5   1  14
D72V13, multiclass
    clus
vv   18P LOSS MUTATED 18P LOSS WILD-TYPE
  R0              105                207
  R1                5                  5
  R2                3                  1
  RX                4                 14

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
D73V1, survival
                    sevent
clus2                  0   1
  18Q LOSS MUTATED   117  57
  18Q LOSS WILD-TYPE 184  61
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               174                245 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
                57                 61 
$`18Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4398 TCGA-05-4402 TCGA-05-4405 TCGA-05-4417 
       50.07         3.98        47.05         8.02        20.05        14.93 
TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        12.00        30.02        21.99        26.01        26.01 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-05-5715 
       24.00        15.02         4.96        28.96         0.99         2.04 
TCGA-35-4123 TCGA-35-5375 TCGA-38-4627 TCGA-38-4628 TCGA-38-4631 TCGA-38-4632 
        5.95         8.68        37.71        49.02        11.64        44.61 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2657 TCGA-44-2662 TCGA-44-2665 TCGA-44-3918 
       14.73        46.98        13.15        42.08        42.77        34.06 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6775 TCGA-44-6777 TCGA-44-6779 TCGA-44-7662 
       10.78         9.93        23.18        32.45        16.41         7.17 
TCGA-44-7669 TCGA-44-7670 TCGA-44-A479 TCGA-44-A47F TCGA-44-A4SU TCGA-49-4487 
       18.87        29.00        15.95        11.08         2.50        28.11 
TCGA-49-4488 TCGA-49-4490 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4512 
       28.57        12.66        46.72        14.07        32.84         5.16 
TCGA-49-6742 TCGA-49-6743 TCGA-50-5066 TCGA-50-5068 TCGA-50-5072 TCGA-50-5933 
       15.02        12.13        31.04        49.28         8.05        77.88 
TCGA-50-5936 TCGA-50-5941 TCGA-50-5946 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
        8.45        18.64        22.55        11.05        12.16        33.37 
TCGA-53-7624 TCGA-53-7626 TCGA-55-1594 TCGA-55-1596 TCGA-55-6712 TCGA-55-6968 
       34.26        30.54        38.73        45.17         0.79        42.48 
TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6979 TCGA-55-6980 TCGA-55-6982 
        0.92        48.49         3.88         7.76         2.20        32.71 
TCGA-55-6985 TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 
       40.54         0.59         1.12         0.13         3.12         1.32 
TCGA-55-7725 TCGA-55-7726 TCGA-55-7728 TCGA-55-7910 TCGA-55-7994 TCGA-55-8087 
        1.28         1.02         0.79         6.48         1.02         0.69 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8094 TCGA-55-8097 TCGA-55-8207 TCGA-55-8616 
        0.20         1.41         0.13         0.49         2.17         1.58 
TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-62-8394 TCGA-62-8397 
        0.95         1.58         0.03         0.92         4.54        42.38 
TCGA-62-A46O TCGA-62-A46R TCGA-62-A46S TCGA-62-A46U TCGA-62-A470 TCGA-62-A471 
       47.77        56.68        54.35        67.96        39.22        40.93 
TCGA-62-A472 TCGA-64-1679 TCGA-64-1681 TCGA-64-5775 TCGA-64-5778 TCGA-64-5781 
       29.92        55.40        38.33         2.04        42.90        51.25 
TCGA-64-5815 TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-6216 TCGA-67-6217 
       28.44         0.99        20.02        18.84         4.60        13.87 
TCGA-69-7760 TCGA-69-7765 TCGA-69-7979 TCGA-69-8254 TCGA-69-A59K TCGA-73-4662 
        6.64         5.42         2.93         2.50         7.04        29.95 
TCGA-73-4666 TCGA-73-4670 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 
       26.27         4.27        17.06       163.10        27.16         5.65 
TCGA-78-7147 TCGA-78-7150 TCGA-78-7155 TCGA-78-7161 TCGA-78-7535 TCGA-78-7536 
       19.27        21.86        38.50         7.04        31.20         8.02 
TCGA-78-7539 TCGA-78-8660 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 TCGA-86-8074 
       10.75        10.55        27.06         0.36        20.71         0.79 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8672 TCGA-91-6829 TCGA-91-6830 
       15.65        15.85         0.53         0.49        41.33         1.97 
TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-7771 TCGA-91-A4BC 
       13.71        12.23        27.68         7.36        16.18         1.45 
TCGA-91-A4BD TCGA-93-7348 TCGA-95-7567 TCGA-95-7947 TCGA-97-7547 TCGA-97-7552 
        7.17         4.18         5.36         1.32        64.60        63.52 
TCGA-97-7937 TCGA-97-7941 TCGA-97-8174 TCGA-97-8177 TCGA-J2-8192 TCGA-J2-8194 
        5.95         0.72         5.36         4.80         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E5 TCGA-MN-A4N4 TCGA-MP-A4SW TCGA-MP-A4T2 
        9.44         9.27         6.97        20.42        58.45        37.35 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4TF TCGA-MP-A4TI TCGA-MP-A4TJ TCGA-MP-A4TK 
       58.85         5.49        11.05        14.10        11.15        19.13 

$`18Q LOSS WILD-TYPE`
TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 
       19.92        14.01        45.01        37.02         9.96        24.03 
TCGA-05-4403 TCGA-05-4415 TCGA-05-4420 TCGA-05-4430 TCGA-05-4432 TCGA-05-5420 
       19.00         2.96        29.95        25.02        25.02        15.02 
TCGA-05-5428 TCGA-35-3615 TCGA-35-4122 TCGA-38-4625 TCGA-38-4626 TCGA-38-4629 
       22.03         0.46         7.36        97.74       120.79        28.37 
TCGA-38-4630 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2659 TCGA-44-2661 
       35.28        26.30         4.37        43.50        44.94        24.36 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3919 TCGA-44-4112 
        3.19         8.09        37.15        38.24         6.21        23.74 
TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6147 TCGA-44-6148 
       33.30        28.37        12.59        23.77        27.78        11.90 
TCGA-44-6774 TCGA-44-6776 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       21.63        63.72        36.49        14.60        10.68        12.03 
TCGA-44-7667 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       18.31        17.59        23.64        12.66         3.22         8.55 
TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G TCGA-44-A4SS TCGA-49-4486 TCGA-49-4494 
       15.32         9.44         4.44         3.75        76.21        35.54 
TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
        8.81        29.46        55.89        29.26        17.13        11.64 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5930 
       20.48        71.47        70.55        14.96        25.81         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 TCGA-50-5939 TCGA-50-5942 TCGA-50-5944 
        8.78        35.87        21.47        15.12        29.00        25.12 
TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 
       42.31         3.88        25.51         6.21         0.72         8.38 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 TCGA-55-1595 TCGA-55-5899 TCGA-55-6543 
       13.94         9.21        23.05        48.62         2.86         0.07 
TCGA-55-6642 TCGA-55-6969 TCGA-55-6970 TCGA-55-6978 TCGA-55-6981 TCGA-55-6983 
       32.61        40.70        15.25         5.46        45.34        60.03 
TCGA-55-6984 TCGA-55-6986 TCGA-55-6987 TCGA-55-7727 TCGA-55-7815 TCGA-55-7903 
       24.99        71.05        38.47         1.02         1.78         0.62 
TCGA-55-7907 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 TCGA-55-8089 
        0.53         0.69         0.10         0.16         1.08         3.02 
TCGA-55-8092 TCGA-55-8096 TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 
        0.85         1.55         1.51         7.07         1.41         0.72 
TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 
        0.95         0.36         7.46         0.30         0.10         4.80 
TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X 
        6.97         0.49         1.61         2.14         3.45         1.08 
TCGA-55-A48Y TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8395 TCGA-62-8398 
        1.02         0.16         1.55         5.29        39.95        14.60 
TCGA-62-8399 TCGA-62-8402 TCGA-62-A46P TCGA-62-A46V TCGA-64-1676 TCGA-64-1677 
       77.10        47.47        19.53        72.30        56.81        20.65 
TCGA-64-1678 TCGA-64-1680 TCGA-64-5774 TCGA-64-5779 TCGA-67-3773 TCGA-67-3774 
       39.09        37.02        87.98        28.41        14.04        12.66 
TCGA-67-6215 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7974 
        5.69         6.12        22.68        13.61         7.56         6.05 
TCGA-69-7978 TCGA-69-7980 TCGA-69-8253 TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 
        2.30        12.56         3.25         4.21         2.01        52.57 
TCGA-73-4659 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 
       23.38        15.35         1.32         5.39         1.25        20.42 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7156 
       20.58        35.93        39.48        24.99        19.50        32.09 
TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        40.11        22.29       104.15       223.96         8.48 
TCGA-78-7167 TCGA-78-7220 TCGA-78-7537 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       88.11        26.53        53.33        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-86-6562 TCGA-86-7713 
      208.60        39.72        77.59       110.50        12.36        13.87 
TCGA-86-7953 TCGA-86-7955 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8075 
       19.43        16.70        24.49         0.33         0.43        15.75 
TCGA-86-8076 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
       10.92         0.62         0.85         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.56        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6849 TCGA-91-8496 
        1.28        10.62        10.16         2.60         1.15         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-93-7347 TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 
        5.69         1.18         9.76         6.08         1.12         0.07 
TCGA-95-7944 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7553 TCGA-97-7554 
        0.69         4.34         4.04        31.66        43.76        25.48 
TCGA-97-7938 TCGA-97-8171 TCGA-97-8172 TCGA-97-8175 TCGA-97-8179 TCGA-97-A4M2 
        0.59         3.48         5.95         2.83         0.49         6.48 
TCGA-97-A4M7 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 
        8.91        12.89        14.04        15.06         1.45         5.56 
TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 
        7.82         2.50         3.81         0.20         9.37        11.61 
TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T4 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       86.14        49.35        86.04         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TH TCGA-MP-A5C7 
        2.43        10.09        29.42         4.67        48.99 

  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
              0.03               0.07 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            163.10             223.96 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
            12.905             12.660 
[1] "0.0 - 163.1 (12.9)" "0.1 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
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        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "18Q LOSS MUTATED"   "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"18Q LOSS WILD-TYPE" "18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"18Q LOSS WILD-TYPE"   "18Q LOSS MUTATED"   "18Q LOSS MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "18Q LOSS MUTATED" "18Q LOSS WILD-TYPE" 
[1] "hr=" "1.4"
D73V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  18Q LOSS MUTATED         1       33       55        22        37         24
  18Q LOSS WILD-TYPE       2       80       76        22        28         41
                    vv
clus                 STAGE IIIB STAGE IV
  18Q LOSS MUTATED            5       12
  18Q LOSS WILD-TYPE          6       10
D73V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  18Q LOSS MUTATED    49 115  18   8
  18Q LOSS WILD-TYPE  92 140  21  10
D73V4, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  T1               49                 92
  T2              115                140
  T3               18                 21
  T4                8                 10
                    vv
clus                  N0  N1 N2+N3
  18Q LOSS MUTATED   114  45    27
  18Q LOSS WILD-TYPE 176  40    43
D73V5, multiclass
       clus
vv      18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  N0                 114                176
  N1                  45                 40
  N2+N3               27                 43
                    vv
clus                  M0  M1 M1A M1B  MX
  18Q LOSS MUTATED   124  11   0   1  52
  18Q LOSS WILD-TYPE 190   7   1   2  63
D73V6, multiclass
D73V7, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED   113  77
  18Q LOSS WILD-TYPE 131 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED    113   77
  18Q LOSS WILD-TYPE  131  134
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  FEMALE              113                131
  MALE                 77                134
D73V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  18Q LOSS MUTATED                            5
  18Q LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  18Q LOSS MUTATED                                  40
  18Q LOSS WILD-TYPE                                52
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  18Q LOSS MUTATED                                                  125
  18Q LOSS WILD-TYPE                                                167
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  18Q LOSS MUTATED                                            1
  18Q LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  18Q LOSS MUTATED                                               7
  18Q LOSS WILD-TYPE                                            10
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  18Q LOSS MUTATED                                1
  18Q LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  18Q LOSS MUTATED                                    2
  18Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  18Q LOSS MUTATED                              1                             4
  18Q LOSS WILD-TYPE                            1                            14
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  18Q LOSS MUTATED                                 1
  18Q LOSS WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  18Q LOSS MUTATED                                               0
  18Q LOSS WILD-TYPE                                             4
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  18Q LOSS MUTATED                              3
  18Q LOSS WILD-TYPE                            4
D73V9, multiclass
D73V10, binary
                    cls
clus                   0   1
  18Q LOSS MUTATED     6 184
  18Q LOSS WILD-TYPE  15 250
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  18Q LOSS MUTATED      6  184
  18Q LOSS WILD-TYPE   15  250
     clus
vv    18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  NO                 6                 15
  YES              184                250
D73V11, continuous
D73V12, continuous
                    vv
clus                  R0  R1  R2  RX
  18Q LOSS MUTATED   130   8   3   3
  18Q LOSS WILD-TYPE 182   2   1  15
D73V13, multiclass
    clus
vv   18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  R0              130                182
  R1                8                  2
  R2                3                  1
  RX                3                 15

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
D74V1, survival
                    sevent
clus2                  0   1
  19P LOSS MUTATED   135  66
  19P LOSS WILD-TYPE 166  52
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               201                218 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
                66                 52 
$`19P LOSS MUTATED`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4396 TCGA-05-4398 
        3.98        19.92        14.01        45.01         9.96        47.05 
TCGA-05-4402 TCGA-05-4415 TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4427 
        8.02         2.96         8.98        29.95        12.00        26.01 
TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 
       25.02        24.00        15.02        15.02        28.96        22.03 
TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 TCGA-38-4628 TCGA-38-4630 
        7.36         5.95         8.68        97.74        49.02        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-5644 
       11.64        44.61        14.73        43.50        46.98        28.37 
TCGA-44-6144 TCGA-44-6146 TCGA-44-6774 TCGA-44-6776 TCGA-44-6778 TCGA-44-6779 
       23.77         9.93        21.63        63.72        36.49        16.41 
TCGA-44-7660 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-8117 
       10.68        18.31        18.87        29.00        17.59        12.66 
TCGA-44-8119 TCGA-44-8120 TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4490 
        3.22         8.55         3.75         2.50        76.21        12.66 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4507 TCGA-49-4510 TCGA-49-6742 TCGA-49-6743 
       46.72        14.07         8.81        29.46        15.02        12.13 
TCGA-49-6744 TCGA-49-6745 TCGA-50-5051 TCGA-50-5072 TCGA-50-5931 TCGA-50-5932 
       29.26        17.13        14.96         8.05         8.78        35.87 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 
        8.45        15.12        18.64        25.12        22.55         3.88 
TCGA-50-6593 TCGA-50-6597 TCGA-50-7109 TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1592 
       11.05        33.37         8.38        13.94         9.21        23.05 
TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 
       38.73        45.17         2.86        42.48         0.92        48.49 
TCGA-55-6975 TCGA-55-6978 TCGA-55-6981 TCGA-55-6982 TCGA-55-7576 TCGA-55-7727 
        3.88         5.46        45.34        32.71         1.32         1.02 
TCGA-55-7910 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8089 
        6.48         0.10         1.02         0.16         1.08         3.02 
TCGA-55-8092 TCGA-55-8094 TCGA-55-8302 TCGA-55-8512 TCGA-55-8616 TCGA-55-A48X 
        0.85         0.13         0.72         0.10         1.58         1.08 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 
        0.92         0.16         1.55         5.29         4.54        39.95 
TCGA-62-8397 TCGA-62-8398 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46R TCGA-62-A46S 
       42.38        14.60        47.47        47.77        56.68        54.35 
TCGA-62-A46U TCGA-62-A470 TCGA-62-A471 TCGA-64-1676 TCGA-64-1681 TCGA-64-5774 
       67.96        39.22        40.93        56.81        38.33        87.98 
TCGA-64-5778 TCGA-64-5779 TCGA-67-3770 TCGA-67-3772 TCGA-67-3774 TCGA-69-7761 
       42.90        28.41         0.99        18.84        12.66         6.12 
TCGA-69-7763 TCGA-69-7764 TCGA-69-7978 TCGA-69-7980 TCGA-69-8255 TCGA-69-A59K 
       22.68        13.61         2.30        12.56         4.21         7.04 
TCGA-71-6725 TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 
        2.01        23.38        26.27        15.35         4.27         1.25 
TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 TCGA-78-7147 TCGA-78-7148 TCGA-78-7149 
       20.42        17.06         5.65        19.27        20.58        35.93 
TCGA-78-7150 TCGA-78-7153 TCGA-78-7156 TCGA-78-7159 TCGA-78-7162 TCGA-78-7166 
       21.86        24.99        32.09        40.11       104.15         8.48 
TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 TCGA-78-7542 TCGA-86-7701 
       88.11        31.20         8.02        10.75        10.55         0.36 
TCGA-86-7713 TCGA-86-7953 TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
       13.87        19.43        16.70         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8279 TCGA-86-8280 TCGA-86-8669 TCGA-86-8672 TCGA-86-A456 
       15.75        15.85         0.53         1.08         0.49         0.33 
TCGA-86-A4D0 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 
        0.99        10.62        41.33         1.97        10.16        13.71 
TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 TCGA-91-A4BC TCGA-95-7039 
       12.23         7.36         1.15        16.18         1.45         1.12 
TCGA-95-7043 TCGA-95-7567 TCGA-95-7948 TCGA-95-A4VK TCGA-97-8171 TCGA-97-8174 
        0.07         5.36         4.34         4.04         3.48         5.36 
TCGA-99-7458 TCGA-99-8025 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-L4-A4E5 
       12.89        14.04         5.56         5.03         9.44         6.97 
TCGA-L9-A443 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T4 TCGA-MP-A4T6 
        3.81        11.61        86.14        49.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TC TCGA-MP-A4TF TCGA-MP-A4TH 
        5.49         5.29        31.20         2.43        11.05         4.67 
TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
       14.10        19.13        48.99 

$`19P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4390 TCGA-05-4397 TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 
       50.07        37.02        24.03        19.00        20.05        14.93 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4430 TCGA-05-5423 TCGA-05-5429 
       30.02        21.99        26.01        25.02         4.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-7271 
        2.04         0.46       120.79        37.71        28.37        26.30 
TCGA-38-A44F TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        4.37        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6145 TCGA-44-6147 TCGA-44-6148 
       23.74        33.30        12.59        10.78        27.78        11.90 
TCGA-44-6775 TCGA-44-6777 TCGA-44-7659 TCGA-44-7661 TCGA-44-7662 TCGA-44-7672 
       23.18        32.45        14.60        12.03         7.17        23.64 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-49-4487 
       15.95        15.32         9.44        11.08         4.44        28.11 
TCGA-49-4488 TCGA-49-4494 TCGA-49-4506 TCGA-49-4512 TCGA-49-4514 TCGA-49-6761 
       28.57        35.54        32.84         5.16        55.89        11.64 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 
       20.48        71.47        70.55        25.81        31.04        49.28 
TCGA-50-5930 TCGA-50-5933 TCGA-50-5935 TCGA-50-5942 TCGA-50-6590 TCGA-50-6592 
        9.27        77.88        21.47        29.00        42.31        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-55-1595 
       12.16         6.21         0.72        34.26        30.54        48.62 
TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6979 
        0.07        32.61         0.79        40.70        15.25         7.76 
TCGA-55-6980 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
        2.20        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 
        0.59         1.12         0.13         3.12         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7911 TCGA-55-8087 
        0.79         1.78         0.62         0.53         0.69         0.69 
TCGA-55-8090 TCGA-55-8091 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        0.20         1.41         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 
        7.07         1.41         0.95         0.36         7.46         0.30 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         6.97         0.49         1.61         2.14         3.45 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-62-8399 TCGA-62-A46P 
        1.02         0.95         1.58         0.03        77.10        19.53 
TCGA-62-A46V TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       72.30        29.92        20.65        39.09        55.40        37.02 
TCGA-64-5775 TCGA-64-5781 TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-6215 
        2.04        51.25        28.44        20.02        14.04         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        4.60        13.87         6.64         5.42         7.56         6.05 
TCGA-69-7979 TCGA-69-8253 TCGA-69-8254 TCGA-73-4658 TCGA-73-4662 TCGA-73-4675 
        2.93         3.25         2.50        52.57        29.95         1.32 
TCGA-73-4676 TCGA-78-7143 TCGA-78-7145 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 
        5.39       163.10        27.16        39.48        19.50        38.50 
TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7163 TCGA-78-7220 TCGA-78-7537 
        5.88        22.29         7.04       223.96        26.53        53.33 
TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 
       28.96        32.68       208.60        39.72        77.59        10.55 
TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 TCGA-86-8054 TCGA-86-8076 
      110.50        27.06        12.36        20.71        24.49        10.92 
TCGA-86-8278 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 TCGA-86-8671 
       15.65         0.62         0.85         1.12         1.45         0.56 
TCGA-86-8673 TCGA-86-8674 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6835 TCGA-91-6847 
       14.93        13.28         0.43         1.28         2.60        27.68 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 
        6.44         5.69         1.18         7.17         9.76         4.18 
TCGA-93-8067 TCGA-95-7944 TCGA-95-7947 TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 
        6.08         0.69         1.32        31.66        64.60        63.52 
TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 
       43.76        25.48         5.95         0.59         0.72         5.95 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8028 
        2.83         4.80         0.49         6.48         8.91        15.06 
TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A444 
        1.45         3.72         9.27         7.82         2.50         0.20 
TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MP-A4SW TCGA-MP-A4T2 TCGA-MP-A4T9 TCGA-MP-A4TD 
        9.37        20.42        58.45        37.35        41.59        10.09 
TCGA-MP-A4TE TCGA-MP-A4TJ 
       29.42        11.15 

  19P LOSS MUTATED 19P LOSS WILD-TYPE 
              0.07               0.03 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            104.15             223.96 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
            13.610             12.095 
[1] "0.1 - 104.2 (13.6)" "0.0 - 224.0 (12.1)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
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        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "19P LOSS MUTATED" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "19P LOSS MUTATED"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"19P LOSS WILD-TYPE"   "19P LOSS MUTATED"   "19P LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"19P LOSS WILD-TYPE" "19P LOSS WILD-TYPE"   "19P LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" "19P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "19P LOSS MUTATED"   "19P LOSS MUTATED" 
[1] "hr=" "1.5"
D74V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  19P LOSS MUTATED         3       46       56        25        35         35
  19P LOSS WILD-TYPE       0       67       75        19        30         30
                    vv
clus                 STAGE IIIB STAGE IV
  19P LOSS MUTATED            7       14
  19P LOSS WILD-TYPE          4        8
D74V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19P LOSS MUTATED    62 130  17  10
  19P LOSS WILD-TYPE  79 125  22   8
D74V4, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  T1               62                 79
  T2              130                125
  T3               17                 22
  T4               10                  8
                    vv
clus                  N0  N1 N2+N3
  19P LOSS MUTATED   132  48    37
  19P LOSS WILD-TYPE 158  37    33
D74V5, multiclass
       clus
vv      19P LOSS MUTATED 19P LOSS WILD-TYPE
  N0                 132                158
  N1                  48                 37
  N2+N3               37                 33
                    vv
clus                  M0  M1 M1A M1B  MX
  19P LOSS MUTATED   160  12   1   2  44
  19P LOSS WILD-TYPE 154   6   0   1  71
D74V6, multiclass
D74V7, binary
                    cls
clus                   0   1
  19P LOSS MUTATED   105 116
  19P LOSS WILD-TYPE 139  95
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED    105  116
  19P LOSS WILD-TYPE  139   95
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  FEMALE              105                139
  MALE                116                 95
D74V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19P LOSS MUTATED                            5
  19P LOSS WILD-TYPE                          8
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19P LOSS MUTATED                                  49
  19P LOSS WILD-TYPE                                43
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19P LOSS MUTATED                                                  141
  19P LOSS WILD-TYPE                                                151
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19P LOSS MUTATED                                            0
  19P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19P LOSS MUTATED                                               9
  19P LOSS WILD-TYPE                                             8
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19P LOSS MUTATED                                1
  19P LOSS WILD-TYPE                              1
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19P LOSS MUTATED                                    2
  19P LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19P LOSS MUTATED                              1                             9
  19P LOSS WILD-TYPE                            1                             9
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  19P LOSS MUTATED                                 0
  19P LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19P LOSS MUTATED                                               1
  19P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19P LOSS MUTATED                              3
  19P LOSS WILD-TYPE                            4
D74V9, multiclass
D74V10, binary
                    cls
clus                   0   1
  19P LOSS MUTATED     7 214
  19P LOSS WILD-TYPE  14 220
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19P LOSS MUTATED      7  214
  19P LOSS WILD-TYPE   14  220
     clus
vv    19P LOSS MUTATED 19P LOSS WILD-TYPE
  NO                 7                 14
  YES              214                220
D74V11, continuous
D74V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19P LOSS MUTATED   152   2   3   9
  19P LOSS WILD-TYPE 160   8   1   9
D74V13, multiclass
    clus
vv   19P LOSS MUTATED 19P LOSS WILD-TYPE
  R0              152                160
  R1                2                  8
  R2                3                  1
  RX                9                  9

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
D75V1, survival
                    sevent
clus2                  0   1
  19Q LOSS MUTATED    83  44
  19Q LOSS WILD-TYPE 218  74
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               127                292 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
                44                 74 
$`19Q LOSS MUTATED`
TCGA-05-4250 TCGA-05-4396 TCGA-05-4398 TCGA-05-4402 TCGA-05-4415 TCGA-05-4420 
        3.98         9.96        47.05         8.02         2.96        29.95 
TCGA-05-4432 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 TCGA-05-5428 TCGA-38-4625 
       25.02        15.02        15.02        28.96        22.03        97.74 
TCGA-38-4630 TCGA-38-4632 TCGA-38-6178 TCGA-44-2655 TCGA-44-2656 TCGA-44-5644 
       35.28        44.61        14.73        43.50        46.98        28.37 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7667 TCGA-44-7670 TCGA-44-7671 TCGA-44-8117 
       36.49        16.41        18.31        29.00        17.59        12.66 
TCGA-44-8119 TCGA-44-8120 TCGA-44-A4SU TCGA-49-4486 TCGA-49-4490 TCGA-49-4505 
        3.22         8.55         2.50        76.21        12.66        14.07 
TCGA-49-4507 TCGA-49-6742 TCGA-49-6745 TCGA-50-5051 TCGA-50-5072 TCGA-50-5932 
        8.81        15.02        17.13        14.96         8.05        35.87 
TCGA-50-5939 TCGA-50-5941 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6593 
       15.12        18.64        25.12        22.55         3.88        11.05 
TCGA-50-6597 TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 
       33.37        13.94        23.05        38.73        45.17         2.86 
TCGA-55-6968 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6982 TCGA-55-7727 
       42.48        48.49         3.88         5.46        32.71         1.02 
TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 TCGA-55-8511 TCGA-55-8616 TCGA-55-A48X 
        1.02         0.16         1.08         0.30         1.58         1.08 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8402 TCGA-62-A46R 
        5.29         4.54        39.95        42.38        47.47        56.68 
TCGA-62-A470 TCGA-62-A471 TCGA-64-1676 TCGA-64-1681 TCGA-67-3770 TCGA-67-3772 
       39.22        40.93        56.81        38.33         0.99        18.84 
TCGA-69-7978 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 TCGA-73-4659 TCGA-73-4666 
        2.30         4.21         7.04         2.01        23.38        26.27 
TCGA-73-4670 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7146 TCGA-78-7148 
        4.27         1.25        20.42        17.06         5.65        20.58 
TCGA-78-7149 TCGA-78-7153 TCGA-78-7162 TCGA-78-7167 TCGA-78-7535 TCGA-78-7536 
       35.93        24.99       104.15        88.11        31.20         8.02 
TCGA-78-7542 TCGA-86-7701 TCGA-86-7953 TCGA-86-7955 TCGA-86-8074 TCGA-86-8075 
       10.55         0.36        19.43        16.70         0.79        15.75 
TCGA-86-8279 TCGA-86-8669 TCGA-86-8672 TCGA-86-A456 TCGA-86-A4D0 TCGA-91-6828 
       15.85         1.08         0.49         0.33         0.99        10.62 
TCGA-91-6829 TCGA-91-6831 TCGA-91-6836 TCGA-91-6840 TCGA-91-6848 TCGA-91-6849 
       41.33        10.16        13.71        12.23         7.36         1.15 
TCGA-91-7771 TCGA-91-A4BC TCGA-95-7039 TCGA-95-7567 TCGA-95-7948 TCGA-97-8171 
       16.18         1.45         1.12         5.36         4.34         3.48 
TCGA-99-7458 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-A4AD TCGA-L4-A4E5 TCGA-MP-A4SV 
       12.89         5.56         5.03         9.44         6.97        86.14 
TCGA-MP-A4SY TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TI TCGA-MP-A4TK 
       49.35        58.85         5.29        31.20        14.10        19.13 
TCGA-MP-A5C7 
       48.99 

$`19Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4397 
       50.07        19.92        14.01        45.01        37.02        24.03 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4418 TCGA-05-4422 TCGA-05-4424 
       19.00        20.05        14.93         8.98        12.00        30.02 
TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4433 TCGA-05-5423 
       21.99        26.01        26.01        25.02        24.00         4.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4631 TCGA-38-7271 
      120.79        37.71        49.02        28.37        11.64        26.30 
TCGA-38-A44F TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 
        4.37        13.15        44.94        24.36        42.08        42.77 
TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 
        3.19         8.09        37.15        38.24        34.06         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 
       23.74        33.30        12.59        23.77        10.78         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 TCGA-44-7672 
       14.60        10.68        12.03         7.17        18.87        23.64 
TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SS 
       15.95        15.32         9.44        11.08         4.44         3.75 
TCGA-49-4487 TCGA-49-4488 TCGA-49-4494 TCGA-49-4501 TCGA-49-4506 TCGA-49-4510 
       28.11        28.57        35.54        46.72        32.84        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6743 TCGA-49-6744 TCGA-49-6761 TCGA-50-5044 
        5.16        55.89        12.13        29.26        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       71.47        70.55        25.81        31.04        49.28         9.27 
TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5936 TCGA-50-5942 TCGA-50-6590 
        8.78        77.88        21.47         8.45        29.00        42.31 
TCGA-50-6592 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 
       25.51        12.16         6.21         0.72         8.38        34.26 
TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-6543 TCGA-55-6642 TCGA-55-6712 
       30.54         9.21        48.62         0.07        32.61         0.79 
TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       40.70        15.25         0.92         7.76         2.20        45.34 
TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 
       60.03        24.99        40.54        71.05        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 TCGA-55-7726 
        1.12         0.13         3.12         1.32         1.28         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 
        0.79         1.78         0.62         0.53         6.48         0.69 
TCGA-55-7914 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8092 
        0.10         0.69         3.02         0.20         1.41         0.85 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.13         1.55         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8512 
        1.41         0.72         0.95         0.36         7.46         0.10 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         6.97         0.49         1.61         2.14         3.45 
TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.02         0.95         1.58         0.03         0.92         0.16 
TCGA-55-A4DF TCGA-62-8398 TCGA-62-8399 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46S 
        1.55        14.60        77.10        47.77        19.53        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A472 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 
       67.96        72.30        29.92        20.65        39.09        55.40 
TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       37.02        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 
       28.44        20.02        14.04        12.66         5.69         4.60 
TCGA-67-6217 TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
       13.87         6.64         6.12        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7974 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        7.56         6.05         2.93        12.56         3.25         2.50 
TCGA-73-4658 TCGA-73-4662 TCGA-73-4668 TCGA-73-4675 TCGA-73-4676 TCGA-78-7143 
       52.57        29.95        15.35         1.32         5.39       163.10 
TCGA-78-7145 TCGA-78-7147 TCGA-78-7150 TCGA-78-7152 TCGA-78-7154 TCGA-78-7155 
       27.16        19.27        21.86        39.48        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 TCGA-78-7163 
       32.09         5.88        40.11        22.29         7.04       223.96 
TCGA-78-7166 TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7633 
        8.48        26.53        53.33        10.75        28.96        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 
      208.60        39.72        77.59        10.55       110.50        27.06 
TCGA-86-6562 TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 
       12.36        20.71        13.87        24.49         0.33         0.43 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8358 TCGA-86-8359 TCGA-86-8585 
       10.92        15.65         0.53         0.62         0.85         1.12 
TCGA-86-8668 TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A4P7 TCGA-86-A4P8 
        1.45         0.56        14.93        13.28         0.43         1.28 
TCGA-91-6830 TCGA-91-6835 TCGA-91-6847 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 
        1.97         2.60        27.68         6.44         5.69         1.18 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 
        7.17         9.76         4.18         6.08         0.07         0.69 
TCGA-95-7947 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        1.32         4.04        31.66        64.60        63.52        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8172 TCGA-97-8174 
       25.48         5.95         0.59         0.72         5.95         5.36 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8025 
        2.83         4.80         0.49         6.48         8.91        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-J2-8194 TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 
       15.06         1.45         3.72         9.27         7.82         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SW 
        3.81         0.20         9.37        20.42        11.61        58.45 
TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TC TCGA-MP-A4TD 
       37.35        86.04         5.49        41.59         2.43        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TJ 
       29.42        11.05         4.67        11.15 

  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
              0.16               0.03 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
            104.15             223.96 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
             15.02              11.77 
[1] "0.2 - 104.2 (15.0)" "0.0 - 224.0 (11.8)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
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"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" "19Q LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"19Q LOSS WILD-TYPE"   "19Q LOSS MUTATED" "19Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
  "19Q LOSS MUTATED"   "19Q LOSS MUTATED" 
[1] "hr=" "1.3"
D75V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  19Q LOSS MUTATED         1       29       36        12        24         23
  19Q LOSS WILD-TYPE       2       84       95        32        41         42
                    vv
clus                 STAGE IIIB STAGE IV
  19Q LOSS MUTATED            7       10
  19Q LOSS WILD-TYPE          4       12
D75V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  19Q LOSS MUTATED    36  83  13   9
  19Q LOSS WILD-TYPE 105 172  26   9
D75V4, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  T1               36                105
  T2               83                172
  T3               13                 26
  T4                9                  9
                    vv
clus                  N0  N1 N2+N3
  19Q LOSS MUTATED    85  30    25
  19Q LOSS WILD-TYPE 205  55    45
D75V5, multiclass
       clus
vv      19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  N0                  85                205
  N1                  30                 55
  N2+N3               25                 45
                    vv
clus                  M0  M1 M1A M1B  MX
  19Q LOSS MUTATED   102  10   1   0  27
  19Q LOSS WILD-TYPE 212   8   0   3  88
D75V6, multiclass
D75V7, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED    70  72
  19Q LOSS WILD-TYPE 174 139
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED     70   72
  19Q LOSS WILD-TYPE  174  139
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  FEMALE               70                174
  MALE                 72                139
D75V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  19Q LOSS MUTATED                            2
  19Q LOSS WILD-TYPE                         11
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  19Q LOSS MUTATED                                  32
  19Q LOSS WILD-TYPE                                60
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  19Q LOSS MUTATED                                                   92
  19Q LOSS WILD-TYPE                                                200
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  19Q LOSS MUTATED                                            0
  19Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  19Q LOSS MUTATED                                               5
  19Q LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  19Q LOSS MUTATED                                0
  19Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  19Q LOSS MUTATED                                    1
  19Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  19Q LOSS MUTATED                              0                             7
  19Q LOSS WILD-TYPE                            2                            11
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  19Q LOSS MUTATED                                 0
  19Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  19Q LOSS MUTATED                                               2
  19Q LOSS WILD-TYPE                                             2
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  19Q LOSS MUTATED                              1
  19Q LOSS WILD-TYPE                            6
D75V9, multiclass
D75V10, binary
                    cls
clus                   0   1
  19Q LOSS MUTATED     4 138
  19Q LOSS WILD-TYPE  17 296
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  19Q LOSS MUTATED      4  138
  19Q LOSS WILD-TYPE   17  296
     clus
vv    19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  NO                 4                 17
  YES              138                296
D75V11, continuous
D75V12, continuous
                    vv
clus                  R0  R1  R2  RX
  19Q LOSS MUTATED    95   2   3   5
  19Q LOSS WILD-TYPE 217   8   1  13
D75V13, multiclass
    clus
vv   19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  R0               95                217
  R1                2                  8
  R2                3                  1
  RX                5                 13

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
D76V1, survival
                    sevent
clus2                  0   1
  20P LOSS MUTATED    63  34
  20P LOSS WILD-TYPE 238  84
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                97                322 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
                34                 84 
$`20P LOSS MUTATED`
TCGA-05-4405 TCGA-05-4415 TCGA-05-4422 TCGA-05-5423 TCGA-05-5428 TCGA-44-2656 
       20.05         2.96        12.00         4.96        22.03        46.98 
TCGA-44-2662 TCGA-44-2665 TCGA-44-2668 TCGA-44-3919 TCGA-44-6779 TCGA-44-A47A 
       42.08        42.77         8.09         6.21        16.41        15.32 
TCGA-44-A47G TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-6743 TCGA-49-6745 
        4.44        46.72        14.07         5.16        12.13        17.13 
TCGA-50-5051 TCGA-50-5072 TCGA-50-5933 TCGA-50-5936 TCGA-50-5939 TCGA-50-5944 
       14.96         8.05        77.88         8.45        15.12        25.12 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 TCGA-53-7624 TCGA-55-1594 TCGA-55-1595 
       11.05        12.16        33.37        34.26        38.73        48.62 
TCGA-55-6712 TCGA-55-6968 TCGA-55-6980 TCGA-55-6984 TCGA-55-7725 TCGA-55-7727 
        0.79        42.48         2.20        24.99         1.28         1.02 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7994 TCGA-55-8090 TCGA-55-8092 TCGA-55-8207 
        0.62         0.53         1.02         0.20         0.85         2.17 
TCGA-55-8506 TCGA-55-8616 TCGA-62-8397 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46S 
        0.36         1.58        42.38        47.77        19.53        54.35 
TCGA-62-A46U TCGA-62-A46V TCGA-62-A471 TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 
       67.96        72.30        40.93        29.92        56.81        39.09 
TCGA-64-1681 TCGA-64-5781 TCGA-67-3770 TCGA-67-3773 TCGA-67-6216 TCGA-69-7761 
       38.33        51.25         0.99        14.04         4.60         6.12 
TCGA-69-7974 TCGA-69-A59K TCGA-73-4666 TCGA-73-4670 TCGA-73-4675 TCGA-73-7499 
        6.05         7.04        26.27         4.27         1.32        17.06 
TCGA-78-7143 TCGA-78-7145 TCGA-78-7146 TCGA-78-7148 TCGA-78-7158 TCGA-78-7535 
      163.10        27.16         5.65        20.58         5.88        31.20 
TCGA-78-7537 TCGA-78-8660 TCGA-86-6562 TCGA-86-7953 TCGA-86-7955 TCGA-86-8280 
       53.33        10.55        12.36        19.43        16.70         0.53 
TCGA-86-8673 TCGA-91-6828 TCGA-91-6831 TCGA-91-6835 TCGA-91-6848 TCGA-93-7347 
       14.93        10.62        10.16         2.60         7.36         9.76 
TCGA-95-7039 TCGA-95-7043 TCGA-97-8177 TCGA-99-7458 TCGA-99-8033 TCGA-L4-A4E5 
        1.12         0.07         4.80        12.89         5.56         6.97 
TCGA-L9-A444 TCGA-MN-A4N4 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4T8 TCGA-MP-A4TC 
        0.20        20.42        86.14        58.45         5.29         2.43 
TCGA-MP-A4TI 
       14.10 

$`20P LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4396 TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4417 
        9.96        24.03        47.05         8.02        19.00        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 
        8.98        29.95        30.02        21.99        26.01        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5425 
       25.02        25.02        24.00        15.02        15.02        28.96 
TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 
        0.99         2.04         0.46         7.36         5.95         8.68 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 
       97.74       120.79        37.71        49.02        28.37        35.28 
TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 
       11.64        44.61        14.73        26.30         4.37        43.50 
TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2666 TCGA-44-3396 TCGA-44-3398 
       13.15        44.94        24.36         3.19        37.15        38.24 
TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 
       34.06        23.74        33.30        28.37        12.59        23.77 
TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 
       10.78         9.93        27.78        11.90        21.63        23.18 
TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 
       63.72        32.45        36.49        14.60        10.68        12.03 
TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 
        7.17        18.31        18.87        29.00        17.59        23.64 
TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F 
       12.66         3.22         8.55        15.95         9.44        11.08 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-4514 TCGA-49-6742 
       35.54        32.84         8.81        29.46        55.89        15.02 
TCGA-49-6744 TCGA-49-6761 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 
       29.26        11.64        20.48        71.47        70.55        25.81 
TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 TCGA-50-5931 TCGA-50-5932 TCGA-50-5935 
       31.04        49.28         9.27         8.78        35.87        21.47 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       18.64        29.00        22.55        42.31         3.88        25.51 
TCGA-50-6595 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 TCGA-53-7813 TCGA-53-A4EZ 
        6.21         0.72         8.38        30.54        13.94         9.21 
TCGA-55-1592 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 TCGA-55-6969 
       23.05        45.17         2.86         0.07        32.61        40.70 
TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 
       15.25         0.92        48.49         3.88         5.46         7.76 
TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       45.34        32.71        60.03        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7726 
        0.59         1.12         0.13         3.12         1.32         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7995 
        0.79         1.78         6.48         0.69         0.10         0.16 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8091 TCGA-55-8094 TCGA-55-8096 
        1.08         0.69         3.02         1.41         0.13         1.55 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 
        0.49         1.51         7.07         1.41         0.72         0.95 
TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 
        7.46         0.30         0.10         4.80         6.97         0.49 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        1.58         0.03         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46R 
        4.54        39.95        14.60        77.10        47.47        56.68 
TCGA-62-A470 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 TCGA-64-5774 TCGA-64-5775 
       39.22        20.65        55.40        37.02        87.98         2.04 
TCGA-64-5778 TCGA-64-5779 TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 
       42.90        28.41        28.44        20.02        18.84        12.66 
TCGA-67-6215 TCGA-67-6217 TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 
        5.69        13.87         6.64        22.68        13.61         5.42 
TCGA-69-7973 TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 
        7.56         2.30         2.93        12.56         3.25         2.50 
TCGA-69-8255 TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4668 
        4.21         2.01        52.57        23.38        29.95        15.35 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 
        5.39         1.25        20.42        19.27        35.93        21.86 
TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 TCGA-78-7156 TCGA-78-7159 
       39.48        24.99        19.50        38.50        32.09        40.11 
TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 TCGA-78-7167 
       22.29         7.04       104.15       223.96         8.48        88.11 
TCGA-78-7220 TCGA-78-7536 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       26.53         8.02        10.75        28.96        10.55        32.68 
TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-83-5908 TCGA-86-7701 
      208.60        39.72        77.59       110.50        27.06         0.36 
TCGA-86-7711 TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 
       20.71        13.87        24.49         0.33         0.43         0.79 
TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8358 TCGA-86-8359 
       15.75        10.92        15.65        15.85         0.62         0.85 
TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8674 
        1.12         1.45         1.08         0.56         0.49        13.28 
TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 
        0.33         0.99         0.43         1.28        41.33         1.97 
TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6849 TCGA-91-7771 TCGA-91-8496 
       13.71        12.23        27.68         1.15        16.18         6.44 
TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7348 TCGA-93-8067 
        5.69         1.18         1.45         7.17         4.18         6.08 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        5.36         0.69         1.32         4.34         4.04        31.66 
TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 
       64.60        63.52        43.76        25.48         5.95         0.59 
TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 TCGA-97-8179 
        0.72         3.48         5.95         5.36         2.83         0.49 
TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 
        6.48         8.91        14.04        15.06         1.45         5.03 
TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE TCGA-J2-A4AG TCGA-L4-A4E6 TCGA-L9-A443 
        3.72         9.44         9.27         7.82         2.50         3.81 
TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 TCGA-MP-A4T6 
        9.37        11.61        49.35        37.35        86.04        58.85 
TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF 
        5.49        41.59        31.20        10.09        29.42        11.05 
TCGA-MP-A4TH TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        11.15        19.13        48.99 

  20P LOSS MUTATED 20P LOSS WILD-TYPE 
              0.07               0.03 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
            163.10             223.96 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
             12.36              12.66 
[1] "0.1 - 163.1 (12.4)" "0.0 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
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"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "20P LOSS MUTATED"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "20P LOSS MUTATED"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "20P LOSS MUTATED"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "20P LOSS MUTATED" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED"   "20P LOSS MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE"   "20P LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"20P LOSS WILD-TYPE"   "20P LOSS MUTATED" "20P LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"20P LOSS WILD-TYPE" "20P LOSS WILD-TYPE" 
[1] "hr=" "1.3"
D76V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  20P LOSS MUTATED         1       20       30        10        17         20
  20P LOSS WILD-TYPE       2       93      101        34        48         45
                    vv
clus                 STAGE IIIB STAGE IV
  20P LOSS MUTATED            4        5
  20P LOSS WILD-TYPE          7       17
D76V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20P LOSS MUTATED    27  62  10   6
  20P LOSS WILD-TYPE 114 193  29  12
D76V4, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  T1               27                114
  T2               62                193
  T3               10                 29
  T4                6                 12
                    vv
clus                  N0  N1 N2+N3
  20P LOSS MUTATED    64  20    22
  20P LOSS WILD-TYPE 226  65    48
D76V5, multiclass
       clus
vv      20P LOSS MUTATED 20P LOSS WILD-TYPE
  N0                  64                226
  N1                  20                 65
  N2+N3               22                 48
                    vv
clus                  M0  M1 M1A M1B  MX
  20P LOSS MUTATED    80   6   0   0  21
  20P LOSS WILD-TYPE 234  12   1   3  94
D76V6, multiclass
D76V7, binary
                    cls
clus                   0   1
  20P LOSS MUTATED    56  51
  20P LOSS WILD-TYPE 188 160
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED     56   51
  20P LOSS WILD-TYPE  188  160
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  FEMALE               56                188
  MALE                 51                160
D76V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20P LOSS MUTATED                            3
  20P LOSS WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20P LOSS MUTATED                                  25
  20P LOSS WILD-TYPE                                67
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20P LOSS MUTATED                                                   67
  20P LOSS WILD-TYPE                                                225
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20P LOSS MUTATED                                            0
  20P LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20P LOSS MUTATED                                               5
  20P LOSS WILD-TYPE                                            12
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20P LOSS MUTATED                                2
  20P LOSS WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20P LOSS MUTATED                                    1
  20P LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20P LOSS MUTATED                              0                             2
  20P LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  20P LOSS MUTATED                                 0
  20P LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20P LOSS MUTATED                                               1
  20P LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20P LOSS MUTATED                              1
  20P LOSS WILD-TYPE                            6
D76V9, multiclass
D76V10, binary
                    cls
clus                   0   1
  20P LOSS MUTATED     4 103
  20P LOSS WILD-TYPE  17 331
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20P LOSS MUTATED      4  103
  20P LOSS WILD-TYPE   17  331
     clus
vv    20P LOSS MUTATED 20P LOSS WILD-TYPE
  NO                 4                 17
  YES              103                331
D76V11, continuous
D76V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20P LOSS MUTATED    78   3   1   3
  20P LOSS WILD-TYPE 234   7   3  15
D76V13, multiclass
    clus
vv   20P LOSS MUTATED 20P LOSS WILD-TYPE
  R0               78                234
  R1                3                  7
  R2                1                  3
  RX                3                 15

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
D77V1, survival
                    sevent
clus2                  0   1
  20Q LOSS MUTATED    40  19
  20Q LOSS WILD-TYPE 261  99
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                59                360 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                19                 99 
$`20Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4402 TCGA-05-4405 TCGA-05-4415 TCGA-05-4422 TCGA-05-5428 
       50.07         8.02        20.05         2.96        12.00        22.03 
TCGA-44-2656 TCGA-44-2662 TCGA-44-3919 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47G 
       46.98        42.08         6.21        15.32         9.44         4.44 
TCGA-49-4501 TCGA-49-6743 TCGA-49-6745 TCGA-50-5051 TCGA-50-5072 TCGA-50-5936 
       46.72        12.13        17.13        14.96         8.05         8.45 
TCGA-50-6593 TCGA-53-7624 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-8087 TCGA-55-8090 
       11.05        34.26         9.21        48.62         0.69         0.20 
TCGA-55-8097 TCGA-55-8207 TCGA-62-8397 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46S 
        0.49         2.17        42.38        47.77        19.53        54.35 
TCGA-62-A46U TCGA-62-A472 TCGA-64-1676 TCGA-64-1678 TCGA-67-3770 TCGA-67-3773 
       67.96        29.92        56.81        39.09         0.99        14.04 
TCGA-67-6216 TCGA-69-7761 TCGA-69-A59K TCGA-73-4675 TCGA-73-7499 TCGA-78-7143 
        4.60         6.12         7.04         1.32        17.06       163.10 
TCGA-78-7146 TCGA-78-7158 TCGA-78-7160 TCGA-78-7537 TCGA-86-7953 TCGA-86-7955 
        5.65         5.88        22.29        53.33        19.43        16.70 
TCGA-86-8280 TCGA-86-8358 TCGA-91-6828 TCGA-91-6831 TCGA-93-7347 TCGA-97-8174 
        0.53         0.62        10.62        10.16         9.76         5.36 
TCGA-99-7458 TCGA-99-8033 TCGA-MP-A4SW TCGA-MP-A4TC TCGA-MP-A4TI 
       12.89         5.56        58.45         2.43        14.10 

$`20Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 
        3.98        19.92        14.01        45.01        37.02         9.96 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4403 TCGA-05-4417 TCGA-05-4418 TCGA-05-4420 
       24.03        47.05        19.00        14.93         8.98        29.95 
TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 
       30.02        21.99        26.01        26.01        25.02        25.02 
TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 
       24.00        15.02        15.02         4.96        28.96         0.99 
TCGA-05-5715 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4625 
        2.04         0.46         7.36         5.95         8.68        97.74 
TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
      120.79        37.71        49.02        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 
       44.61        14.73        26.30         4.37        43.50        13.15 
TCGA-44-2659 TCGA-44-2661 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       44.94        24.36        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-5645 
       38.24        34.06        23.74        33.30        28.37        12.59 
TCGA-44-6144 TCGA-44-6145 TCGA-44-6146 TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 
       23.77        10.78         9.93        27.78        11.90        21.63 
TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 
       23.18        63.72        32.45        36.49        16.41        14.60 
TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 
       10.68        12.03         7.17        18.31        18.87        29.00 
TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 TCGA-44-A479 
       17.59        23.64        12.66         3.22         8.55        15.95 
TCGA-44-A47F TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       11.08         3.75         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 
       12.66        35.54        14.07        32.84         8.81        29.46 
TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6744 TCGA-49-6761 TCGA-50-5044 
        5.16        55.89        15.02        29.26        11.64        20.48 
TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 TCGA-50-5068 TCGA-50-5930 
       71.47        70.55        25.81        31.04        49.28         9.27 
TCGA-50-5931 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 TCGA-50-5941 
        8.78        35.87        77.88        21.47        15.12        18.64 
TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
       29.00        25.12        22.55        42.31         3.88        25.51 
TCGA-50-6594 TCGA-50-6595 TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7626 
       12.16         6.21        33.37         0.72         8.38        30.54 
TCGA-53-7813 TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6543 
       13.94        23.05        38.73        45.17         2.86         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6968 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 
       32.61         0.79        42.48        40.70        15.25         0.92 
TCGA-55-6972 TCGA-55-6975 TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 
       48.49         3.88         5.46         7.76         2.20        45.34 
TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 
       32.71        60.03        24.99        40.54        71.05        38.47 
TCGA-55-7281 TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7576 TCGA-55-7725 
        0.59         1.12         0.13         3.12         1.32         1.28 
TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 TCGA-55-7815 TCGA-55-7903 TCGA-55-7907 
        1.02         1.02         0.79         1.78         0.62         0.53 
TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 TCGA-55-8085 
        6.48         0.69         0.10         1.02         0.16         1.08 
TCGA-55-8089 TCGA-55-8091 TCGA-55-8092 TCGA-55-8094 TCGA-55-8096 TCGA-55-8206 
        3.02         1.41         0.85         0.13         1.55         1.51 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 
        7.07         1.41         0.72         0.95         0.36         7.46 
TCGA-55-8511 TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 
        0.30         0.10         4.80         6.97         0.49         1.58 
TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z 
        1.61         2.14         3.45         1.08         1.02         0.95 
TCGA-55-A490 TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-55-A4DG 
        1.58         0.03         0.92         0.16         1.55         5.29 
TCGA-62-8394 TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 TCGA-62-8402 TCGA-62-A46R 
        4.54        39.95        14.60        77.10        47.47        56.68 
TCGA-62-A46V TCGA-62-A470 TCGA-62-A471 TCGA-64-1677 TCGA-64-1679 TCGA-64-1680 
       72.30        39.22        40.93        20.65        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 
       38.33        87.98         2.04        42.90        28.41        51.25 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3774 TCGA-67-6215 TCGA-67-6217 
       28.44        20.02        18.84        12.66         5.69        13.87 
TCGA-69-7760 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 TCGA-69-7974 
        6.64        22.68        13.61         5.42         7.56         6.05 
TCGA-69-7978 TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 
        2.30         2.93        12.56         3.25         2.50         4.21 
TCGA-71-6725 TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 
        2.01        52.57        23.38        29.95        26.27        15.35 
TCGA-73-4670 TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7145 TCGA-78-7147 
        4.27         5.39         1.25        20.42        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7159 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 
       38.50        32.09        40.11         7.04       104.15       223.96 
TCGA-78-7166 TCGA-78-7167 TCGA-78-7220 TCGA-78-7535 TCGA-78-7536 TCGA-78-7539 
        8.48        88.11        26.53        31.20         8.02        10.75 
TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8655 
       28.96        10.55        32.68       208.60        39.72        77.59 
TCGA-78-8660 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 
       10.55       110.50        27.06        12.36         0.36        20.71 
TCGA-86-7713 TCGA-86-8054 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 
       13.87        24.49         0.33         0.43         0.79        15.75 
TCGA-86-8076 TCGA-86-8278 TCGA-86-8279 TCGA-86-8359 TCGA-86-8585 TCGA-86-8668 
       10.92        15.65        15.85         0.85         1.12         1.45 
TCGA-86-8669 TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 
        1.08         0.56         0.49        14.93        13.28         0.33 
TCGA-86-A4D0 TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6835 
        0.99         0.43         1.28        41.33         1.97         2.60 
TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-7771 
       13.71        12.23        27.68         7.36         1.15        16.18 
TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7348 
        6.44         5.69         1.18         1.45         7.17         4.18 
TCGA-93-8067 TCGA-95-7039 TCGA-95-7043 TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 
        6.08         1.12         0.07         5.36         0.69         1.32 
TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 
        4.34         4.04        31.66        64.60        63.52        43.76 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8172 
       25.48         5.95         0.59         0.72         3.48         5.95 
TCGA-97-8175 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-8025 
        2.83         4.80         0.49         6.48         8.91        14.04 
TCGA-99-8028 TCGA-99-8032 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
       15.06         1.45         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        7.82         6.97         2.50         3.81         0.20         9.37 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4T2 TCGA-MP-A4T4 
       20.42        11.61        86.14        49.35        37.35        86.04 
TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA TCGA-MP-A4TD 
       58.85         5.49         5.29        41.59        31.20        10.09 
TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TJ TCGA-MP-A4TK TCGA-MP-A5C7 
       29.42        11.05         4.67        11.15        19.13        48.99 

  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
              0.20               0.03 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
            163.10             223.96 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
             12.13              12.66 
[1] "0.2 - 163.1 (12.1)" "0.0 - 224.0 (12.7)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
  "20Q LOSS MUTATED"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED"   "20Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
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"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"20Q LOSS WILD-TYPE"   "20Q LOSS MUTATED" "20Q LOSS WILD-TYPE" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"20Q LOSS WILD-TYPE" "20Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D77V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  20Q LOSS MUTATED         0       11       24         8         5         10
  20Q LOSS WILD-TYPE       3      102      107        36        60         55
                    vv
clus                 STAGE IIIB STAGE IV
  20Q LOSS MUTATED            2        4
  20Q LOSS WILD-TYPE          9       18
D77V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  20Q LOSS MUTATED    16  39   4   4
  20Q LOSS WILD-TYPE 125 216  35  14
D77V4, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  T1               16                125
  T2               39                216
  T3                4                 35
  T4                4                 14
                    vv
clus                  N0  N1 N2+N3
  20Q LOSS MUTATED    43   8    11
  20Q LOSS WILD-TYPE 247  77    59
D77V5, multiclass
       clus
vv      20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  N0                  43                247
  N1                   8                 77
  N2+N3               11                 59
                    vv
clus                  M0  M1 M1A M1B  MX
  20Q LOSS MUTATED    51   4   0   0   9
  20Q LOSS WILD-TYPE 263  14   1   3 106
D77V6, multiclass
D77V7, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED    33  31
  20Q LOSS WILD-TYPE 211 180
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED     33   31
  20Q LOSS WILD-TYPE  211  180
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  FEMALE               33                211
  MALE                 31                180
D77V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  20Q LOSS MUTATED                            3
  20Q LOSS WILD-TYPE                         10
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  20Q LOSS MUTATED                                  17
  20Q LOSS WILD-TYPE                                75
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  20Q LOSS MUTATED                                                   34
  20Q LOSS WILD-TYPE                                                258
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  20Q LOSS MUTATED                                            0
  20Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  20Q LOSS MUTATED                                               3
  20Q LOSS WILD-TYPE                                            14
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  20Q LOSS MUTATED                                2
  20Q LOSS WILD-TYPE                              0
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  20Q LOSS MUTATED                                    1
  20Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  20Q LOSS MUTATED                              0                             2
  20Q LOSS WILD-TYPE                            2                            16
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  20Q LOSS MUTATED                                 0
  20Q LOSS WILD-TYPE                               1
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  20Q LOSS MUTATED                                               1
  20Q LOSS WILD-TYPE                                             3
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  20Q LOSS MUTATED                              1
  20Q LOSS WILD-TYPE                            6
D77V9, multiclass
D77V10, binary
                    cls
clus                   0   1
  20Q LOSS MUTATED     1  63
  20Q LOSS WILD-TYPE  20 371
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  20Q LOSS MUTATED      1   63
  20Q LOSS WILD-TYPE   20  371
     clus
vv    20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  NO                 1                 20
  YES               63                371
D77V11, continuous
D77V12, continuous
                    vv
clus                  R0  R1  R2  RX
  20Q LOSS MUTATED    47   1   1   4
  20Q LOSS WILD-TYPE 265   9   3  14
D77V13, multiclass
    clus
vv   20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  R0               47                265
  R1                1                  9
  R2                1                  3
  RX                4                 14

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
D78V1, survival
                    sevent
clus2                  0   1
  21Q LOSS MUTATED    98  39
  21Q LOSS WILD-TYPE 203  79
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               137                282 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
                39                 79 
$`21Q LOSS MUTATED`
TCGA-05-4249 TCGA-05-4382 TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4398 
       50.07        19.92        45.01        37.02         9.96        47.05 
TCGA-05-4402 TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4427 
        8.02        14.93        29.95        12.00        30.02        26.01 
TCGA-05-4430 TCGA-05-4432 TCGA-05-5420 TCGA-05-5429 TCGA-35-4122 TCGA-35-4123 
       25.02        25.02        15.02         0.99         7.36         5.95 
TCGA-38-4627 TCGA-44-2659 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 
       37.71        44.94        33.30        28.37        23.77        10.78 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7667 
       36.49        16.41        10.68        12.03         7.17        18.31 
TCGA-44-7670 TCGA-44-7672 TCGA-44-A479 TCGA-44-A47B TCGA-44-A47F TCGA-44-A4SS 
       29.00        23.64        15.95         9.44        11.08         3.75 
TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-6745 TCGA-49-6761 TCGA-50-5045 
       32.84         8.81        29.46        17.13        11.64        71.47 
TCGA-50-5051 TCGA-50-5068 TCGA-50-5072 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       14.96        49.28         8.05        35.87        77.88        21.47 
TCGA-50-5944 TCGA-50-5946 TCGA-50-6592 TCGA-50-6595 TCGA-50-7109 TCGA-53-7813 
       25.12        22.55        25.51         6.21         8.38        13.94 
TCGA-55-1592 TCGA-55-1594 TCGA-55-1596 TCGA-55-5899 TCGA-55-6968 TCGA-55-6971 
       23.05        38.73        45.17         2.86        42.48         0.92 
TCGA-55-6972 TCGA-55-6978 TCGA-55-6983 TCGA-55-6985 TCGA-55-6986 TCGA-55-7576 
       48.49         5.46        60.03        40.54        71.05         1.32 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7910 TCGA-55-7911 TCGA-55-7994 TCGA-55-8089 
        0.79         1.78         6.48         0.69         1.02         3.02 
TCGA-55-8090 TCGA-55-8092 TCGA-55-8302 TCGA-55-8510 TCGA-55-8514 TCGA-55-A490 
        0.20         0.85         0.72         7.46         6.97         1.58 
TCGA-55-A4DF TCGA-62-8402 TCGA-62-A46S TCGA-62-A470 TCGA-62-A471 TCGA-64-1677 
        1.55        47.47        54.35        39.22        40.93        20.65 
TCGA-64-1679 TCGA-64-5774 TCGA-64-5775 TCGA-64-5781 TCGA-67-3770 TCGA-69-7760 
       55.40        87.98         2.04        51.25         0.99         6.64 
TCGA-69-7761 TCGA-69-7974 TCGA-69-7979 TCGA-69-7980 TCGA-69-8255 TCGA-73-4658 
        6.12         6.05         2.93        12.56         4.21        52.57 
TCGA-73-4659 TCGA-73-4666 TCGA-73-4668 TCGA-73-4670 TCGA-73-4675 TCGA-78-7146 
       23.38        26.27        15.35         4.27         1.32         5.65 
TCGA-78-7148 TCGA-78-7153 TCGA-78-7154 TCGA-78-7159 TCGA-78-7167 TCGA-78-7220 
       20.58        24.99        19.50        40.11        88.11        26.53 
TCGA-78-7536 TCGA-78-8640 TCGA-78-8660 TCGA-86-7701 TCGA-86-7713 TCGA-86-7953 
        8.02       208.60        10.55         0.36        13.87        19.43 
TCGA-86-8054 TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-91-6828 TCGA-91-6840 
       24.49         0.85         1.12         1.08        10.62        12.23 
TCGA-91-7771 TCGA-95-7043 TCGA-97-7547 TCGA-97-8172 TCGA-97-8174 TCGA-97-8175 
       16.18         0.07        64.60         5.95         5.36         2.83 
TCGA-99-8025 TCGA-99-8028 TCGA-99-8032 TCGA-99-8033 TCGA-J2-A4AE TCGA-MN-A4N4 
       14.04        15.06         1.45         5.56         9.27        20.42 
TCGA-MP-A4SV TCGA-MP-A4SY TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TJ 
       86.14        49.35        29.42        11.05        11.15 

$`21Q LOSS WILD-TYPE`
TCGA-05-4250 TCGA-05-4384 TCGA-05-4397 TCGA-05-4403 TCGA-05-4405 TCGA-05-4415 
        3.98        14.01        24.03        19.00        20.05         2.96 
TCGA-05-4418 TCGA-05-4425 TCGA-05-4426 TCGA-05-4433 TCGA-05-4434 TCGA-05-5423 
        8.98        21.99        26.01        24.00        15.02         4.96 
TCGA-05-5425 TCGA-05-5428 TCGA-05-5715 TCGA-35-3615 TCGA-35-5375 TCGA-38-4625 
       28.96        22.03         2.04         0.46         8.68        97.74 
TCGA-38-4626 TCGA-38-4628 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 
      120.79        49.02        28.37        35.28        11.64        44.61 
TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 
       14.73        26.30         4.37        43.50        46.98        13.15 
TCGA-44-2661 TCGA-44-2662 TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 
       24.36        42.08        42.77         3.19         8.09        37.15 
TCGA-44-3398 TCGA-44-3918 TCGA-44-3919 TCGA-44-4112 TCGA-44-5645 TCGA-44-6146 
       38.24        34.06         6.21        23.74        12.59         9.93 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-7659 TCGA-44-7669 TCGA-44-7671 TCGA-44-8117 TCGA-44-8119 TCGA-44-8120 
       14.60        18.87        17.59        12.66         3.22         8.55 
TCGA-44-A47A TCGA-44-A47G TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       15.32         4.44         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4512 TCGA-49-4514 
       12.66        35.54        46.72        14.07         5.16        55.89 
TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-50-5044 TCGA-50-5049 TCGA-50-5055 
       15.02        12.13        29.26        20.48        70.55        25.81 
TCGA-50-5066 TCGA-50-5930 TCGA-50-5931 TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 
       31.04         9.27         8.78         8.45        15.12        18.64 
TCGA-50-5942 TCGA-50-6590 TCGA-50-6591 TCGA-50-6593 TCGA-50-6594 TCGA-50-6597 
       29.00        42.31         3.88        11.05        12.16        33.37 
TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 TCGA-53-A4EZ TCGA-55-1595 TCGA-55-6543 
        0.72        34.26        30.54         9.21        48.62         0.07 
TCGA-55-6642 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6975 TCGA-55-6979 
       32.61         0.79        40.70        15.25         3.88         7.76 
TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6984 TCGA-55-6987 TCGA-55-7281 
        2.20        45.34        32.71        24.99        38.47         0.59 
TCGA-55-7283 TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
        1.12         0.13         3.12         1.28         1.02         1.02 
TCGA-55-7903 TCGA-55-7907 TCGA-55-7914 TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 
        0.62         0.53         0.10         0.16         1.08         0.69 
TCGA-55-8091 TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 
        1.41         0.13         1.55         0.49         1.51         2.17 
TCGA-55-8299 TCGA-55-8301 TCGA-55-8505 TCGA-55-8506 TCGA-55-8511 TCGA-55-8512 
        7.07         1.41         0.95         0.36         0.30         0.10 
TCGA-55-8513 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 TCGA-55-8620 TCGA-55-8621 
        4.80         0.49         1.58         1.61         2.14         3.45 
TCGA-55-A48X TCGA-55-A48Y TCGA-55-A48Z TCGA-55-A492 TCGA-55-A493 TCGA-55-A494 
        1.08         1.02         0.95         0.03         0.92         0.16 
TCGA-55-A4DG TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 TCGA-62-8399 
        5.29         4.54        39.95        42.38        14.60        77.10 
TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46U TCGA-62-A46V TCGA-62-A472 
       47.77        19.53        56.68        67.96        72.30        29.92 
TCGA-64-1676 TCGA-64-1678 TCGA-64-1680 TCGA-64-1681 TCGA-64-5778 TCGA-64-5779 
       56.81        39.09        37.02        38.33        42.90        28.41 
TCGA-64-5815 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
       28.44        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-67-6217 TCGA-69-7763 TCGA-69-7764 TCGA-69-7765 TCGA-69-7973 
        4.60        13.87        22.68        13.61         5.42         7.56 
TCGA-69-7978 TCGA-69-8253 TCGA-69-8254 TCGA-69-A59K TCGA-71-6725 TCGA-73-4662 
        2.30         3.25         2.50         7.04         2.01        29.95 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-73-7499 TCGA-78-7143 TCGA-78-7145 
        5.39         1.25        20.42        17.06       163.10        27.16 
TCGA-78-7147 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7155 TCGA-78-7156 
       19.27        35.93        21.86        39.48        38.50        32.09 
TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7163 TCGA-78-7166 
        5.88        22.29         7.04       104.15       223.96         8.48 
TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       31.20        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-83-5908 TCGA-86-6562 TCGA-86-7711 
       39.72        77.59       110.50        27.06        12.36        20.71 
TCGA-86-7955 TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 
       16.70         0.33         0.43         0.79        15.75        10.92 
TCGA-86-8278 TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8668 TCGA-86-8671 
       15.65        15.85         0.53         0.62         1.45         0.56 
TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 TCGA-86-A4P7 
        0.49        14.93        13.28         0.33         0.99         0.43 
TCGA-86-A4P8 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6835 TCGA-91-6836 
        1.28        41.33         1.97        10.16         2.60        13.71 
TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 TCGA-91-8499 
       27.68         7.36         1.15         6.44         5.69         1.18 
TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7039 
        1.45         7.17         9.76         4.18         6.08         1.12 
TCGA-95-7567 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7546 
        5.36         0.69         1.32         4.34         4.04        31.66 
TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 
       63.52        43.76        25.48         5.95         0.59         0.72 
TCGA-97-8171 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-97-A4M7 TCGA-99-7458 
        3.48         4.80         0.49         6.48         8.91        12.89 
TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 
        5.03         3.72         9.44         7.82         6.97         2.50 
TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 TCGA-MN-A4N5 TCGA-MP-A4SW TCGA-MP-A4T2 
        3.81         0.20         9.37        11.61        58.45        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       86.04        58.85         5.49         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
        2.43        10.09         4.67        14.10        19.13        48.99 

  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
              0.07               0.03 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            208.60             223.96 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
            15.020             12.015 
[1] "0.1 - 208.6 (15.0)" "0.0 - 224.0 (12.0)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
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        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-55-6543         TCGA-55-6642         TCGA-55-6712 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6968         TCGA-55-6969         TCGA-55-6970 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6971         TCGA-55-6972         TCGA-55-6975 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-6978         TCGA-55-6979         TCGA-55-6980 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-6981         TCGA-55-6982         TCGA-55-6983 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-6984         TCGA-55-6985         TCGA-55-6986 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-55-6987         TCGA-55-7281         TCGA-55-7283 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7573         TCGA-55-7574         TCGA-55-7576 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-7725         TCGA-55-7726         TCGA-55-7727 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-7728         TCGA-55-7815         TCGA-55-7903 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-7907         TCGA-55-7910         TCGA-55-7911 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-55-7914         TCGA-55-7994         TCGA-55-7995 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
  "21Q LOSS MUTATED"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "21Q LOSS MUTATED" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED"   "21Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE"   "21Q LOSS MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"21Q LOSS WILD-TYPE" "21Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D78V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  21Q LOSS MUTATED         2       35       42        11        24         23
  21Q LOSS WILD-TYPE       1       78       89        33        41         42
                    vv
clus                 STAGE IIIB STAGE IV
  21Q LOSS MUTATED            5        6
  21Q LOSS WILD-TYPE          6       16
D78V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  21Q LOSS MUTATED    41  86  13   6
  21Q LOSS WILD-TYPE 100 169  26  12
D78V4, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  T1               41                100
  T2               86                169
  T3               13                 26
  T4                6                 12
                    vv
clus                  N0  N1 N2+N3
  21Q LOSS MUTATED    96  26    23
  21Q LOSS WILD-TYPE 194  59    47
D78V5, multiclass
       clus
vv      21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  N0                  96                194
  N1                  26                 59
  N2+N3               23                 47
                    vv
clus                  M0  M1 M1A M1B  MX
  21Q LOSS MUTATED   104   7   0   0  36
  21Q LOSS WILD-TYPE 210  11   1   3  79
D78V6, multiclass
D78V7, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    71  77
  21Q LOSS WILD-TYPE 173 134
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     71   77
  21Q LOSS WILD-TYPE  173  134
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  FEMALE               71                173
  MALE                 77                134
D78V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  21Q LOSS MUTATED                            7
  21Q LOSS WILD-TYPE                          6
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  21Q LOSS MUTATED                                  24
  21Q LOSS WILD-TYPE                                68
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  21Q LOSS MUTATED                                                  102
  21Q LOSS WILD-TYPE                                                190
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  21Q LOSS MUTATED                                            0
  21Q LOSS WILD-TYPE                                          4
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  21Q LOSS MUTATED                                               2
  21Q LOSS WILD-TYPE                                            15
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  21Q LOSS MUTATED                                0
  21Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  21Q LOSS MUTATED                                    1
  21Q LOSS WILD-TYPE                                  2
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  21Q LOSS MUTATED                              0                             5
  21Q LOSS WILD-TYPE                            2                            13
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  21Q LOSS MUTATED                                 1
  21Q LOSS WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  21Q LOSS MUTATED                                               3
  21Q LOSS WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  21Q LOSS MUTATED                              3
  21Q LOSS WILD-TYPE                            4
D78V9, multiclass
D78V10, binary
                    cls
clus                   0   1
  21Q LOSS MUTATED    10 138
  21Q LOSS WILD-TYPE  11 296
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  21Q LOSS MUTATED     10  138
  21Q LOSS WILD-TYPE   11  296
     clus
vv    21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  NO                10                 11
  YES              138                296
D78V11, continuous
D78V12, continuous
                    vv
clus                  R0  R1  R2  RX
  21Q LOSS MUTATED   101   2   1   4
  21Q LOSS WILD-TYPE 211   8   3  14
D78V13, multiclass
    clus
vv   21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  R0              101                211
  R1                2                  8
  R2                1                  3
  RX                4                 14

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
D79V1, survival
                    sevent
clus2                  0   1
  22Q LOSS MUTATED   127  48
  22Q LOSS WILD-TYPE 174  70
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               175                244 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
                48                 70 
$`22Q LOSS MUTATED`
TCGA-05-4389 TCGA-05-4390 TCGA-05-4396 TCGA-05-4397 TCGA-05-4415 TCGA-05-4418 
       45.01        37.02         9.96        24.03         2.96         8.98 
TCGA-05-4424 TCGA-05-4426 TCGA-05-4427 TCGA-05-4432 TCGA-05-4433 TCGA-05-5420 
       30.02        26.01        26.01        25.02        24.00        15.02 
TCGA-05-5425 TCGA-05-5428 TCGA-35-4122 TCGA-35-4123 TCGA-35-5375 TCGA-38-4628 
       28.96        22.03         7.36         5.95         8.68        49.02 
TCGA-38-6178 TCGA-44-2656 TCGA-44-2659 TCGA-44-2662 TCGA-44-3918 TCGA-44-3919 
       14.73        46.98        44.94        42.08        34.06         6.21 
TCGA-44-4112 TCGA-44-5643 TCGA-44-5644 TCGA-44-6144 TCGA-44-6145 TCGA-44-6147 
       23.74        33.30        28.37        23.77        10.78        27.78 
TCGA-44-6778 TCGA-44-7667 TCGA-44-7671 TCGA-44-8117 TCGA-44-8120 TCGA-44-A4SS 
       36.49        18.31        17.59        12.66         8.55         3.75 
TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4507 TCGA-49-4510 TCGA-49-6744 
       46.72        14.07        32.84         8.81        29.46        29.26 
TCGA-49-6761 TCGA-50-5051 TCGA-50-5930 TCGA-50-5932 TCGA-50-5933 TCGA-50-5935 
       11.64        14.96         9.27        35.87        77.88        21.47 
TCGA-50-5936 TCGA-50-5939 TCGA-50-5941 TCGA-50-6590 TCGA-50-6591 TCGA-50-6592 
        8.45        15.12        18.64        42.31         3.88        25.51 
TCGA-50-6597 TCGA-50-6673 TCGA-50-7109 TCGA-53-7624 TCGA-53-7813 TCGA-53-A4EZ 
       33.37         0.72         8.38        34.26        13.94         9.21 
TCGA-55-5899 TCGA-55-6642 TCGA-55-6968 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        2.86        32.61        42.48         0.92        48.49         3.88 
TCGA-55-6980 TCGA-55-6985 TCGA-55-7281 TCGA-55-7283 TCGA-55-7574 TCGA-55-7576 
        2.20        40.54         0.59         1.12         3.12         1.32 
TCGA-55-7903 TCGA-55-7910 TCGA-55-7911 TCGA-55-8092 TCGA-55-8094 TCGA-55-8207 
        0.62         6.48         0.69         0.85         0.13         2.17 
TCGA-55-8505 TCGA-55-8510 TCGA-55-8511 TCGA-55-8512 TCGA-55-8615 TCGA-55-8616 
        0.95         7.46         0.30         0.10         0.49         1.58 
TCGA-55-8620 TCGA-55-A48Z TCGA-55-A490 TCGA-55-A493 TCGA-55-A4DF TCGA-55-A4DG 
        2.14         0.95         1.58         0.92         1.55         5.29 
TCGA-62-A46S TCGA-62-A46U TCGA-62-A472 TCGA-64-1676 TCGA-64-1677 TCGA-64-1679 
       54.35        67.96        29.92        56.81        20.65        55.40 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5778 TCGA-64-5779 TCGA-64-5781 TCGA-67-6217 
       38.33        87.98        42.90        28.41        51.25        13.87 
TCGA-69-7760 TCGA-69-7761 TCGA-69-7763 TCGA-69-7764 TCGA-69-7973 TCGA-69-7978 
        6.64         6.12        22.68        13.61         7.56         2.30 
TCGA-69-7979 TCGA-69-7980 TCGA-69-8253 TCGA-69-A59K TCGA-71-6725 TCGA-73-4659 
        2.93        12.56         3.25         7.04         2.01        23.38 
TCGA-73-4662 TCGA-73-4668 TCGA-73-4670 TCGA-73-4677 TCGA-78-7143 TCGA-78-7145 
       29.95        15.35         4.27         1.25       163.10        27.16 
TCGA-78-7146 TCGA-78-7152 TCGA-78-7159 TCGA-78-7163 TCGA-78-7167 TCGA-78-7535 
        5.65        39.48        40.11       223.96        88.11        31.20 
TCGA-78-7536 TCGA-78-8640 TCGA-78-8660 TCGA-83-5908 TCGA-86-7701 TCGA-86-7711 
        8.02       208.60        10.55        27.06         0.36        20.71 
TCGA-86-7953 TCGA-86-8054 TCGA-86-8074 TCGA-86-8075 TCGA-86-8279 TCGA-86-8358 
       19.43        24.49         0.79        15.75        15.85         0.62 
TCGA-86-8359 TCGA-86-8585 TCGA-86-8669 TCGA-86-8672 TCGA-86-A4D0 TCGA-91-6828 
        0.85         1.12         1.08         0.49         0.99        10.62 
TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 TCGA-91-6836 TCGA-91-6840 TCGA-91-7771 
       41.33         1.97        10.16        13.71        12.23        16.18 
TCGA-91-8499 TCGA-91-A4BC TCGA-95-7039 TCGA-95-7567 TCGA-97-7546 TCGA-97-7552 
        1.18         1.45         1.12         5.36        31.66        63.52 
TCGA-97-7554 TCGA-97-7937 TCGA-97-7938 TCGA-97-8175 TCGA-99-7458 TCGA-99-8032 
       25.48         5.95         0.59         2.83        12.89         1.45 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L9-A444 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SY 
        7.82         6.97         0.20        11.61        86.14        49.35 
TCGA-MP-A4T2 TCGA-MP-A4T6 TCGA-MP-A4T8 TCGA-MP-A4TA TCGA-MP-A4TE TCGA-MP-A4TF 
       37.35        58.85         5.29        31.20        29.42        11.05 
TCGA-MP-A4TJ 
       11.15 

$`22Q LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4398 TCGA-05-4402 
       50.07         3.98        19.92        14.01        47.05         8.02 
TCGA-05-4403 TCGA-05-4405 TCGA-05-4417 TCGA-05-4420 TCGA-05-4422 TCGA-05-4425 
       19.00        20.05        14.93        29.95        12.00        21.99 
TCGA-05-4430 TCGA-05-4434 TCGA-05-5423 TCGA-05-5429 TCGA-05-5715 TCGA-35-3615 
       25.02        15.02         4.96         0.99         2.04         0.46 
TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4629 TCGA-38-4630 TCGA-38-4631 
       97.74       120.79        37.71        28.37        35.28        11.64 
TCGA-38-4632 TCGA-38-7271 TCGA-38-A44F TCGA-44-2655 TCGA-44-2657 TCGA-44-2661 
       44.61        26.30         4.37        43.50        13.15        24.36 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-5645 
       42.77         3.19         8.09        37.15        38.24        12.59 
TCGA-44-6146 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
        9.93        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 TCGA-44-7669 
       16.41        14.60        10.68        12.03         7.17        18.87 
TCGA-44-7670 TCGA-44-7672 TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B 
       29.00        23.64         3.22        15.95        15.32         9.44 
TCGA-44-A47F TCGA-44-A47G TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 
       11.08         4.44         2.50        76.21        28.11        28.57 
TCGA-49-4490 TCGA-49-4494 TCGA-49-4512 TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 
       12.66        35.54         5.16        55.89        15.02        12.13 
TCGA-49-6745 TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5055 TCGA-50-5066 
       17.13        20.48        71.47        70.55        25.81        31.04 
TCGA-50-5068 TCGA-50-5072 TCGA-50-5931 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 
       49.28         8.05         8.78        29.00        25.12        22.55 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-53-7626 TCGA-55-1592 TCGA-55-1594 
       11.05        12.16         6.21        30.54        23.05        38.73 
TCGA-55-1595 TCGA-55-1596 TCGA-55-6543 TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 
       48.62        45.17         0.07         0.79        40.70        15.25 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 TCGA-55-6984 
        5.46         7.76        45.34        32.71        60.03        24.99 
TCGA-55-6986 TCGA-55-6987 TCGA-55-7573 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 
       71.05        38.47         0.13         1.28         1.02         1.02 
TCGA-55-7728 TCGA-55-7815 TCGA-55-7907 TCGA-55-7914 TCGA-55-7994 TCGA-55-7995 
        0.79         1.78         0.53         0.10         1.02         0.16 
TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8090 TCGA-55-8091 TCGA-55-8096 
        1.08         0.69         3.02         0.20         1.41         1.55 
TCGA-55-8097 TCGA-55-8206 TCGA-55-8299 TCGA-55-8301 TCGA-55-8302 TCGA-55-8506 
        0.49         1.51         7.07         1.41         0.72         0.36 
TCGA-55-8513 TCGA-55-8514 TCGA-55-8619 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y 
        4.80         6.97         1.61         3.45         1.08         1.02 
TCGA-55-A492 TCGA-55-A494 TCGA-62-8394 TCGA-62-8395 TCGA-62-8397 TCGA-62-8398 
        0.03         0.16         4.54        39.95        42.38        14.60 
TCGA-62-8399 TCGA-62-8402 TCGA-62-A46O TCGA-62-A46P TCGA-62-A46R TCGA-62-A46V 
       77.10        47.47        47.77        19.53        56.68        72.30 
TCGA-62-A470 TCGA-62-A471 TCGA-64-1678 TCGA-64-1680 TCGA-64-5775 TCGA-64-5815 
       39.22        40.93        39.09        37.02         2.04        28.44 
TCGA-67-3770 TCGA-67-3771 TCGA-67-3772 TCGA-67-3773 TCGA-67-3774 TCGA-67-6215 
        0.99        20.02        18.84        14.04        12.66         5.69 
TCGA-67-6216 TCGA-69-7765 TCGA-69-7974 TCGA-69-8254 TCGA-69-8255 TCGA-73-4658 
        4.60         5.42         6.05         2.50         4.21        52.57 
TCGA-73-4666 TCGA-73-4675 TCGA-73-4676 TCGA-73-7498 TCGA-73-7499 TCGA-78-7147 
       26.27         1.32         5.39        20.42        17.06        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7153 TCGA-78-7154 TCGA-78-7155 
       20.58        35.93        21.86        24.99        19.50        38.50 
TCGA-78-7156 TCGA-78-7158 TCGA-78-7160 TCGA-78-7161 TCGA-78-7162 TCGA-78-7166 
       32.09         5.88        22.29         7.04       104.15         8.48 
TCGA-78-7220 TCGA-78-7537 TCGA-78-7539 TCGA-78-7540 TCGA-78-7542 TCGA-78-7633 
       26.53        53.33        10.75        28.96        10.55        32.68 
TCGA-78-8648 TCGA-78-8655 TCGA-78-8662 TCGA-86-6562 TCGA-86-7713 TCGA-86-7955 
       39.72        77.59       110.50        12.36        13.87        16.70 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8076 TCGA-86-8278 TCGA-86-8280 TCGA-86-8668 
        0.33         0.43        10.92        15.65         0.53         1.45 
TCGA-86-8671 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4P7 TCGA-86-A4P8 
        0.56        14.93        13.28         0.33         0.43         1.28 
TCGA-91-6835 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 TCGA-91-8496 TCGA-91-8497 
        2.60        27.68         7.36         1.15         6.44         5.69 
TCGA-91-A4BD TCGA-93-7347 TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 
        7.17         9.76         4.18         6.08         0.07         0.69 
TCGA-95-7947 TCGA-95-7948 TCGA-95-A4VK TCGA-97-7547 TCGA-97-7553 TCGA-97-7941 
        1.32         4.34         4.04        64.60        43.76         0.72 
TCGA-97-8171 TCGA-97-8172 TCGA-97-8174 TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 
        3.48         5.95         5.36         4.80         0.49         6.48 
TCGA-97-A4M7 TCGA-99-8025 TCGA-99-8028 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 
        8.91        14.04        15.06         5.56         5.03         3.72 
TCGA-J2-A4AD TCGA-J2-A4AE TCGA-L4-A4E6 TCGA-L9-A443 TCGA-MN-A4N1 TCGA-MN-A4N4 
        9.44         9.27         2.50         3.81         9.37        20.42 
TCGA-MP-A4SW TCGA-MP-A4T4 TCGA-MP-A4T7 TCGA-MP-A4T9 TCGA-MP-A4TC TCGA-MP-A4TD 
       58.45        86.04         5.49        41.59         2.43        10.09 
TCGA-MP-A4TH TCGA-MP-A4TI TCGA-MP-A4TK TCGA-MP-A5C7 
        4.67        14.10        19.13        48.99 

  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
              0.10               0.03 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            223.96             120.79 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
            13.610             12.475 
[1] "0.1 - 224.0 (13.6)" "0.0 - 120.8 (12.5)"
        TCGA-05-4249         TCGA-05-4250         TCGA-05-4382 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4384         TCGA-05-4389         TCGA-05-4390 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-05-4396         TCGA-05-4397         TCGA-05-4398 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-4402         TCGA-05-4403         TCGA-05-4405 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-05-4415         TCGA-05-4417         TCGA-05-4418 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-05-4420         TCGA-05-4422         TCGA-05-4424 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-05-4425         TCGA-05-4426         TCGA-05-4427 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-05-4430         TCGA-05-4432         TCGA-05-4433 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-05-4434         TCGA-05-5420         TCGA-05-5423 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-5425         TCGA-05-5428         TCGA-05-5429 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-05-5715         TCGA-35-3615         TCGA-35-4122 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-35-4123         TCGA-35-5375         TCGA-38-4625 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-38-4626         TCGA-38-4627         TCGA-38-4628 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-38-4629         TCGA-38-4630         TCGA-38-4631 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-38-4632         TCGA-38-6178         TCGA-38-7271 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-38-A44F         TCGA-44-2655         TCGA-44-2656 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-44-2657         TCGA-44-2659         TCGA-44-2661 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-2662         TCGA-44-2665         TCGA-44-2666 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-2668         TCGA-44-3396         TCGA-44-3398 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-3918         TCGA-44-3919         TCGA-44-4112 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-44-5643         TCGA-44-5644         TCGA-44-5645 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-6144         TCGA-44-6145         TCGA-44-6146 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-6147         TCGA-44-6148         TCGA-44-6774 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6775         TCGA-44-6776         TCGA-44-6777 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-6778         TCGA-44-6779         TCGA-44-7659 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7660         TCGA-44-7661         TCGA-44-7662 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7667         TCGA-44-7669         TCGA-44-7670 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-7671         TCGA-44-7672         TCGA-44-8117 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-44-8119         TCGA-44-8120         TCGA-44-A479 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-44-A47A         TCGA-44-A47B         TCGA-44-A47F 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-44-A47G         TCGA-44-A4SS         TCGA-44-A4SU 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-49-4486         TCGA-49-4487         TCGA-49-4488 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-4490         TCGA-49-4494         TCGA-49-4501 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-49-4505         TCGA-49-4506         TCGA-49-4507 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-49-4510         TCGA-49-4512         TCGA-49-4514 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-49-6742         TCGA-49-6743         TCGA-49-6744 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-49-6745         TCGA-49-6761         TCGA-50-5044 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5045         TCGA-50-5049         TCGA-50-5051 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-50-5055         TCGA-50-5066         TCGA-50-5068 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-5072         TCGA-50-5930         TCGA-50-5931 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-50-5932         TCGA-50-5933         TCGA-50-5935 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5936         TCGA-50-5939         TCGA-50-5941 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-5942         TCGA-50-5944         TCGA-50-5946 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6590         TCGA-50-6591         TCGA-50-6592 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-50-6593         TCGA-50-6594         TCGA-50-6595 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-50-6597         TCGA-50-6673         TCGA-50-7109 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-53-7624         TCGA-53-7626         TCGA-53-7813 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-53-A4EZ         TCGA-55-1592         TCGA-55-1594 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-1595         TCGA-55-1596         TCGA-55-5899 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
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        TCGA-55-8085         TCGA-55-8087         TCGA-55-8089 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8090         TCGA-55-8091         TCGA-55-8092 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-8094         TCGA-55-8096         TCGA-55-8097 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8206         TCGA-55-8207         TCGA-55-8299 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-8301         TCGA-55-8302         TCGA-55-8505 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-55-8506         TCGA-55-8510         TCGA-55-8511 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-55-8512         TCGA-55-8513         TCGA-55-8514 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-8615         TCGA-55-8616         TCGA-55-8619 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-8620         TCGA-55-8621         TCGA-55-A48X 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-55-A48Y         TCGA-55-A48Z         TCGA-55-A490 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-55-A492         TCGA-55-A493         TCGA-55-A494 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-55-A4DF         TCGA-55-A4DG         TCGA-62-8394 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-62-8395         TCGA-62-8397         TCGA-62-8398 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-62-8399         TCGA-62-8402         TCGA-62-A46O 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-62-A46P         TCGA-62-A46R         TCGA-62-A46S 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-62-A46U         TCGA-62-A46V         TCGA-62-A470 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-62-A471         TCGA-62-A472         TCGA-64-1676 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-64-1677         TCGA-64-1678         TCGA-64-1679 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-64-1680         TCGA-64-1681         TCGA-64-5774 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-64-5775         TCGA-64-5778         TCGA-64-5779 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-64-5781         TCGA-64-5815         TCGA-67-3770 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3771         TCGA-67-3772         TCGA-67-3773 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-3774         TCGA-67-6215         TCGA-67-6216 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-67-6217         TCGA-69-7760         TCGA-69-7761 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-69-7763         TCGA-69-7764         TCGA-69-7765 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-69-7973         TCGA-69-7974         TCGA-69-7978 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-69-7979         TCGA-69-7980         TCGA-69-8253 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-69-8254         TCGA-69-8255         TCGA-69-A59K 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-71-6725         TCGA-73-4658         TCGA-73-4659 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-73-4662         TCGA-73-4666         TCGA-73-4668 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-73-4670         TCGA-73-4675         TCGA-73-4676 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-73-4677         TCGA-73-7498         TCGA-73-7499 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7143         TCGA-78-7145         TCGA-78-7146 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-78-7147         TCGA-78-7148         TCGA-78-7149 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7150         TCGA-78-7152         TCGA-78-7153 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7154         TCGA-78-7155         TCGA-78-7156 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7158         TCGA-78-7159         TCGA-78-7160 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7161         TCGA-78-7162         TCGA-78-7163 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-78-7166         TCGA-78-7167         TCGA-78-7220 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7535         TCGA-78-7536         TCGA-78-7537 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-7539         TCGA-78-7540         TCGA-78-7542 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-78-7633         TCGA-78-8640         TCGA-78-8648 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-78-8655         TCGA-78-8660         TCGA-78-8662 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-83-5908         TCGA-86-6562         TCGA-86-7701 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-7711         TCGA-86-7713         TCGA-86-7953 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-7955         TCGA-86-8054         TCGA-86-8055 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-86-8073         TCGA-86-8074         TCGA-86-8075 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-86-8076         TCGA-86-8278         TCGA-86-8279 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-8280         TCGA-86-8358         TCGA-86-8359 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-86-8585         TCGA-86-8668         TCGA-86-8669 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-8671         TCGA-86-8672         TCGA-86-8673 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-86-8674         TCGA-86-A456         TCGA-86-A4D0 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-86-A4P7         TCGA-86-A4P8         TCGA-91-6828 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-91-6829         TCGA-91-6830         TCGA-91-6831 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-91-6835         TCGA-91-6836         TCGA-91-6840 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-91-6847         TCGA-91-6848         TCGA-91-6849 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-7771         TCGA-91-8496         TCGA-91-8497 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-91-8499         TCGA-91-A4BC         TCGA-91-A4BD 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-93-7347         TCGA-93-7348         TCGA-93-8067 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-95-7039         TCGA-95-7043         TCGA-95-7567 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-95-7944         TCGA-95-7947         TCGA-95-7948 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-95-A4VK         TCGA-97-7546         TCGA-97-7547 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-97-7552         TCGA-97-7553         TCGA-97-7554 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-97-7937         TCGA-97-7938         TCGA-97-7941 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-97-8171         TCGA-97-8172         TCGA-97-8174 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-8175         TCGA-97-8177         TCGA-97-8179 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-97-A4M2         TCGA-97-A4M7         TCGA-99-7458 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-99-8025         TCGA-99-8028         TCGA-99-8032 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-99-8033         TCGA-J2-8192         TCGA-J2-8194 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-J2-A4AD         TCGA-J2-A4AE         TCGA-J2-A4AG 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-L4-A4E5         TCGA-L4-A4E6         TCGA-L9-A443 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-L9-A444         TCGA-MN-A4N1         TCGA-MN-A4N4 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
        TCGA-MN-A4N5         TCGA-MP-A4SV         TCGA-MP-A4SW 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-MP-A4SY         TCGA-MP-A4T2         TCGA-MP-A4T4 
  "22Q LOSS MUTATED"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-MP-A4T6         TCGA-MP-A4T7         TCGA-MP-A4T8 
  "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-MP-A4T9         TCGA-MP-A4TA         TCGA-MP-A4TC 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" "22Q LOSS WILD-TYPE" 
        TCGA-MP-A4TD         TCGA-MP-A4TE         TCGA-MP-A4TF 
"22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED"   "22Q LOSS MUTATED" 
        TCGA-MP-A4TH         TCGA-MP-A4TI         TCGA-MP-A4TJ 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE"   "22Q LOSS MUTATED" 
        TCGA-MP-A4TK         TCGA-MP-A5C7 
"22Q LOSS WILD-TYPE" "22Q LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D79V2, continuous
                    vv
clus                 STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  22Q LOSS MUTATED         3       45       55        18        28         29
  22Q LOSS WILD-TYPE       0       68       76        26        37         36
                    vv
clus                 STAGE IIIB STAGE IV
  22Q LOSS MUTATED            6       10
  22Q LOSS WILD-TYPE          5       12
D79V3, multiclass
                    vv
clus                  T1  T2  T3  T4
  22Q LOSS MUTATED    61 108  17   8
  22Q LOSS WILD-TYPE  80 147  22  10
D79V4, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  T1               61                 80
  T2              108                147
  T3               17                 22
  T4                8                 10
                    vv
clus                  N0  N1 N2+N3
  22Q LOSS MUTATED   125  36    31
  22Q LOSS WILD-TYPE 165  49    39
D79V5, multiclass
       clus
vv      22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  N0                 125                165
  N1                  36                 49
  N2+N3               31                 39
                    vv
clus                  M0  M1 M1A M1B  MX
  22Q LOSS MUTATED   135   8   0   3  46
  22Q LOSS WILD-TYPE 179  10   1   0  69
D79V6, multiclass
D79V7, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED    93 101
  22Q LOSS WILD-TYPE 151 110
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED     93  101
  22Q LOSS WILD-TYPE  151  110
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  FEMALE               93                151
  MALE                101                110
D79V8, continuous
                    vv
clus                 LUNG ACINAR ADENOCARCINOMA
  22Q LOSS MUTATED                            8
  22Q LOSS WILD-TYPE                          5
                    vv
clus                 LUNG ADENOCARCINOMA MIXED SUBTYPE
  22Q LOSS MUTATED                                  35
  22Q LOSS WILD-TYPE                                57
                    vv
clus                 LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  22Q LOSS MUTATED                                                  126
  22Q LOSS WILD-TYPE                                                166
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  22Q LOSS MUTATED                                            1
  22Q LOSS WILD-TYPE                                          3
                    vv
clus                 LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  22Q LOSS MUTATED                                              10
  22Q LOSS WILD-TYPE                                             7
                    vv
clus                 LUNG CLEAR CELL ADENOCARCINOMA
  22Q LOSS MUTATED                                0
  22Q LOSS WILD-TYPE                              2
                    vv
clus                 LUNG MICROPAPILLARY ADENOCARCINOMA
  22Q LOSS MUTATED                                    2
  22Q LOSS WILD-TYPE                                  1
                    vv
clus                 LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  22Q LOSS MUTATED                              0                             6
  22Q LOSS WILD-TYPE                            2                            12
                    vv
clus                 LUNG SIGNET RING ADENOCARCINOMA
  22Q LOSS MUTATED                                 1
  22Q LOSS WILD-TYPE                               0
                    vv
clus                 LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  22Q LOSS MUTATED                                               3
  22Q LOSS WILD-TYPE                                             1
                    vv
clus                 MUCINOUS (COLLOID) CARCINOMA
  22Q LOSS MUTATED                              2
  22Q LOSS WILD-TYPE                            5
D79V9, multiclass
D79V10, binary
                    cls
clus                   0   1
  22Q LOSS MUTATED     8 186
  22Q LOSS WILD-TYPE  13 248
[1] "tbl2"
                    cls
clus                 [,1] [,2]
  22Q LOSS MUTATED      8  186
  22Q LOSS WILD-TYPE   13  248
     clus
vv    22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  NO                 8                 13
  YES              186                248
D79V11, continuous
D79V12, continuous
                    vv
clus                  R0  R1  R2  RX
  22Q LOSS MUTATED   133   5   1   6
  22Q LOSS WILD-TYPE 179   5   3  12
D79V13, multiclass
    clus
vv   22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  R0              133                179
  R1                5                  5
  R2                1                  3
  RX                6                 12

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
D80V1, survival
                   sevent
clus2                 0   1
  XQ LOSS MUTATED    36  15
  XQ LOSS WILD-TYPE 265 103
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               51               368 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               15               103 
$`XQ LOSS MUTATED`
TCGA-05-4396 TCGA-05-4405 TCGA-05-5428 TCGA-05-5715 TCGA-44-5643 TCGA-44-6146 
        9.96        20.05        22.03         2.04        33.30         9.93 
TCGA-44-8120 TCGA-49-4507 TCGA-50-5066 TCGA-50-5932 TCGA-50-5936 TCGA-50-6590 
        8.55         8.81        31.04        35.87         8.45        42.31 
TCGA-50-6597 TCGA-50-7109 TCGA-55-1592 TCGA-55-1595 TCGA-55-1596 TCGA-55-6968 
       33.37         8.38        23.05        48.62        45.17        42.48 
TCGA-55-7576 TCGA-55-7903 TCGA-55-8090 TCGA-55-A48Z TCGA-55-A4DG TCGA-62-8394 
        1.32         0.62         0.20         0.95         5.29         4.54 
TCGA-62-8397 TCGA-62-A46O TCGA-62-A46U TCGA-62-A472 TCGA-64-5778 TCGA-64-5815 
       42.38        47.77        67.96        29.92        42.90        28.44 
TCGA-67-3772 TCGA-67-3773 TCGA-69-7764 TCGA-69-7973 TCGA-73-4670 TCGA-73-7499 
       18.84        14.04        13.61         7.56         4.27        17.06 
TCGA-78-7146 TCGA-78-7166 TCGA-78-7220 TCGA-78-7536 TCGA-78-7542 TCGA-78-8655 
        5.65         8.48        26.53         8.02        10.55        77.59 
TCGA-86-7955 TCGA-86-8054 TCGA-86-8359 TCGA-91-8496 TCGA-95-7039 TCGA-95-7567 
       16.70        24.49         0.85         6.44         1.12         5.36 
TCGA-97-8172 TCGA-97-A4M7 TCGA-MP-A4TK 
        5.95         8.91        19.13 

$`XQ LOSS WILD-TYPE`
TCGA-05-4249 TCGA-05-4250 TCGA-05-4382 TCGA-05-4384 TCGA-05-4389 TCGA-05-4390 
       50.07         3.98        19.92        14.01        45.01        37.02 
TCGA-05-4397 TCGA-05-4398 TCGA-05-4402 TCGA-05-4403 TCGA-05-4415 TCGA-05-4417 
       24.03        47.05         8.02        19.00         2.96        14.93 
TCGA-05-4418 TCGA-05-4420 TCGA-05-4422 TCGA-05-4424 TCGA-05-4425 TCGA-05-4426 
        8.98        29.95        12.00        30.02        21.99        26.01 
TCGA-05-4427 TCGA-05-4430 TCGA-05-4432 TCGA-05-4433 TCGA-05-4434 TCGA-05-5420 
       26.01        25.02        25.02        24.00        15.02        15.02 
TCGA-05-5423 TCGA-05-5425 TCGA-05-5429 TCGA-35-3615 TCGA-35-4122 TCGA-35-4123 
        4.96        28.96         0.99         0.46         7.36         5.95 
TCGA-35-5375 TCGA-38-4625 TCGA-38-4626 TCGA-38-4627 TCGA-38-4628 TCGA-38-4629 
        8.68        97.74       120.79        37.71        49.02        28.37 
TCGA-38-4630 TCGA-38-4631 TCGA-38-4632 TCGA-38-6178 TCGA-38-7271 TCGA-38-A44F 
       35.28        11.64        44.61        14.73        26.30         4.37 
TCGA-44-2655 TCGA-44-2656 TCGA-44-2657 TCGA-44-2659 TCGA-44-2661 TCGA-44-2662 
       43.50        46.98        13.15        44.94        24.36        42.08 
TCGA-44-2665 TCGA-44-2666 TCGA-44-2668 TCGA-44-3396 TCGA-44-3398 TCGA-44-3918 
       42.77         3.19         8.09        37.15        38.24        34.06 
TCGA-44-3919 TCGA-44-4112 TCGA-44-5644 TCGA-44-5645 TCGA-44-6144 TCGA-44-6145 
        6.21        23.74        28.37        12.59        23.77        10.78 
TCGA-44-6147 TCGA-44-6148 TCGA-44-6774 TCGA-44-6775 TCGA-44-6776 TCGA-44-6777 
       27.78        11.90        21.63        23.18        63.72        32.45 
TCGA-44-6778 TCGA-44-6779 TCGA-44-7659 TCGA-44-7660 TCGA-44-7661 TCGA-44-7662 
       36.49        16.41        14.60        10.68        12.03         7.17 
TCGA-44-7667 TCGA-44-7669 TCGA-44-7670 TCGA-44-7671 TCGA-44-7672 TCGA-44-8117 
       18.31        18.87        29.00        17.59        23.64        12.66 
TCGA-44-8119 TCGA-44-A479 TCGA-44-A47A TCGA-44-A47B TCGA-44-A47F TCGA-44-A47G 
        3.22        15.95        15.32         9.44        11.08         4.44 
TCGA-44-A4SS TCGA-44-A4SU TCGA-49-4486 TCGA-49-4487 TCGA-49-4488 TCGA-49-4490 
        3.75         2.50        76.21        28.11        28.57        12.66 
TCGA-49-4494 TCGA-49-4501 TCGA-49-4505 TCGA-49-4506 TCGA-49-4510 TCGA-49-4512 
       35.54        46.72        14.07        32.84        29.46         5.16 
TCGA-49-4514 TCGA-49-6742 TCGA-49-6743 TCGA-49-6744 TCGA-49-6745 TCGA-49-6761 
       55.89        15.02        12.13        29.26        17.13        11.64 
TCGA-50-5044 TCGA-50-5045 TCGA-50-5049 TCGA-50-5051 TCGA-50-5055 TCGA-50-5068 
       20.48        71.47        70.55        14.96        25.81        49.28 
TCGA-50-5072 TCGA-50-5930 TCGA-50-5931 TCGA-50-5933 TCGA-50-5935 TCGA-50-5939 
        8.05         9.27         8.78        77.88        21.47        15.12 
TCGA-50-5941 TCGA-50-5942 TCGA-50-5944 TCGA-50-5946 TCGA-50-6591 TCGA-50-6592 
       18.64        29.00        25.12        22.55         3.88        25.51 
TCGA-50-6593 TCGA-50-6594 TCGA-50-6595 TCGA-50-6673 TCGA-53-7624 TCGA-53-7626 
       11.05        12.16         6.21         0.72        34.26        30.54 
TCGA-53-7813 TCGA-53-A4EZ TCGA-55-1594 TCGA-55-5899 TCGA-55-6543 TCGA-55-6642 
       13.94         9.21        38.73         2.86         0.07        32.61 
TCGA-55-6712 TCGA-55-6969 TCGA-55-6970 TCGA-55-6971 TCGA-55-6972 TCGA-55-6975 
        0.79        40.70        15.25         0.92        48.49         3.88 
TCGA-55-6978 TCGA-55-6979 TCGA-55-6980 TCGA-55-6981 TCGA-55-6982 TCGA-55-6983 
        5.46         7.76         2.20        45.34        32.71        60.03 
TCGA-55-6984 TCGA-55-6985 TCGA-55-6986 TCGA-55-6987 TCGA-55-7281 TCGA-55-7283 
       24.99        40.54        71.05        38.47         0.59         1.12 
TCGA-55-7573 TCGA-55-7574 TCGA-55-7725 TCGA-55-7726 TCGA-55-7727 TCGA-55-7728 
        0.13         3.12         1.28         1.02         1.02         0.79 
TCGA-55-7815 TCGA-55-7907 TCGA-55-7910 TCGA-55-7911 TCGA-55-7914 TCGA-55-7994 
        1.78         0.53         6.48         0.69         0.10         1.02 
TCGA-55-7995 TCGA-55-8085 TCGA-55-8087 TCGA-55-8089 TCGA-55-8091 TCGA-55-8092 
        0.16         1.08         0.69         3.02         1.41         0.85 
TCGA-55-8094 TCGA-55-8096 TCGA-55-8097 TCGA-55-8206 TCGA-55-8207 TCGA-55-8299 
        0.13         1.55         0.49         1.51         2.17         7.07 
TCGA-55-8301 TCGA-55-8302 TCGA-55-8505 TCGA-55-8506 TCGA-55-8510 TCGA-55-8511 
        1.41         0.72         0.95         0.36         7.46         0.30 
TCGA-55-8512 TCGA-55-8513 TCGA-55-8514 TCGA-55-8615 TCGA-55-8616 TCGA-55-8619 
        0.10         4.80         6.97         0.49         1.58         1.61 
TCGA-55-8620 TCGA-55-8621 TCGA-55-A48X TCGA-55-A48Y TCGA-55-A490 TCGA-55-A492 
        2.14         3.45         1.08         1.02         1.58         0.03 
TCGA-55-A493 TCGA-55-A494 TCGA-55-A4DF TCGA-62-8395 TCGA-62-8398 TCGA-62-8399 
        0.92         0.16         1.55        39.95        14.60        77.10 
TCGA-62-8402 TCGA-62-A46P TCGA-62-A46R TCGA-62-A46S TCGA-62-A46V TCGA-62-A470 
       47.47        19.53        56.68        54.35        72.30        39.22 
TCGA-62-A471 TCGA-64-1676 TCGA-64-1677 TCGA-64-1678 TCGA-64-1679 TCGA-64-1680 
       40.93        56.81        20.65        39.09        55.40        37.02 
TCGA-64-1681 TCGA-64-5774 TCGA-64-5775 TCGA-64-5779 TCGA-64-5781 TCGA-67-3770 
       38.33        87.98         2.04        28.41        51.25         0.99 
TCGA-67-3771 TCGA-67-3774 TCGA-67-6215 TCGA-67-6216 TCGA-67-6217 TCGA-69-7760 
       20.02        12.66         5.69         4.60        13.87         6.64 
TCGA-69-7761 TCGA-69-7763 TCGA-69-7765 TCGA-69-7974 TCGA-69-7978 TCGA-69-7979 
        6.12        22.68         5.42         6.05         2.30         2.93 
TCGA-69-7980 TCGA-69-8253 TCGA-69-8254 TCGA-69-8255 TCGA-69-A59K TCGA-71-6725 
       12.56         3.25         2.50         4.21         7.04         2.01 
TCGA-73-4658 TCGA-73-4659 TCGA-73-4662 TCGA-73-4666 TCGA-73-4668 TCGA-73-4675 
       52.57        23.38        29.95        26.27        15.35         1.32 
TCGA-73-4676 TCGA-73-4677 TCGA-73-7498 TCGA-78-7143 TCGA-78-7145 TCGA-78-7147 
        5.39         1.25        20.42       163.10        27.16        19.27 
TCGA-78-7148 TCGA-78-7149 TCGA-78-7150 TCGA-78-7152 TCGA-78-7153 TCGA-78-7154 
       20.58        35.93        21.86        39.48        24.99        19.50 
TCGA-78-7155 TCGA-78-7156 TCGA-78-7158 TCGA-78-7159 TCGA-78-7160 TCGA-78-7161 
       38.50        32.09         5.88        40.11        22.29         7.04 
TCGA-78-7162 TCGA-78-7163 TCGA-78-7167 TCGA-78-7535 TCGA-78-7537 TCGA-78-7539 
      104.15       223.96        88.11        31.20        53.33        10.75 
TCGA-78-7540 TCGA-78-7633 TCGA-78-8640 TCGA-78-8648 TCGA-78-8660 TCGA-78-8662 
       28.96        32.68       208.60        39.72        10.55       110.50 
TCGA-83-5908 TCGA-86-6562 TCGA-86-7701 TCGA-86-7711 TCGA-86-7713 TCGA-86-7953 
       27.06        12.36         0.36        20.71        13.87        19.43 
TCGA-86-8055 TCGA-86-8073 TCGA-86-8074 TCGA-86-8075 TCGA-86-8076 TCGA-86-8278 
        0.33         0.43         0.79        15.75        10.92        15.65 
TCGA-86-8279 TCGA-86-8280 TCGA-86-8358 TCGA-86-8585 TCGA-86-8668 TCGA-86-8669 
       15.85         0.53         0.62         1.12         1.45         1.08 
TCGA-86-8671 TCGA-86-8672 TCGA-86-8673 TCGA-86-8674 TCGA-86-A456 TCGA-86-A4D0 
        0.56         0.49        14.93        13.28         0.33         0.99 
TCGA-86-A4P7 TCGA-86-A4P8 TCGA-91-6828 TCGA-91-6829 TCGA-91-6830 TCGA-91-6831 
        0.43         1.28        10.62        41.33         1.97        10.16 
TCGA-91-6835 TCGA-91-6836 TCGA-91-6840 TCGA-91-6847 TCGA-91-6848 TCGA-91-6849 
        2.60        13.71        12.23        27.68         7.36         1.15 
TCGA-91-7771 TCGA-91-8497 TCGA-91-8499 TCGA-91-A4BC TCGA-91-A4BD TCGA-93-7347 
       16.18         5.69         1.18         1.45         7.17         9.76 
TCGA-93-7348 TCGA-93-8067 TCGA-95-7043 TCGA-95-7944 TCGA-95-7947 TCGA-95-7948 
        4.18         6.08         0.07         0.69         1.32         4.34 
TCGA-95-A4VK TCGA-97-7546 TCGA-97-7547 TCGA-97-7552 TCGA-97-7553 TCGA-97-7554 
        4.04        31.66        64.60        63.52        43.76        25.48 
TCGA-97-7937 TCGA-97-7938 TCGA-97-7941 TCGA-97-8171 TCGA-97-8174 TCGA-97-8175 
        5.95         0.59         0.72         3.48         5.36         2.83 
TCGA-97-8177 TCGA-97-8179 TCGA-97-A4M2 TCGA-99-7458 TCGA-99-8025 TCGA-99-8028 
        4.80         0.49         6.48        12.89        14.04        15.06 
TCGA-99-8032 TCGA-99-8033 TCGA-J2-8192 TCGA-J2-8194 TCGA-J2-A4AD TCGA-J2-A4AE 
        1.45         5.56         5.03         3.72         9.44         9.27 
TCGA-J2-A4AG TCGA-L4-A4E5 TCGA-L4-A4E6 TCGA-L9-A443 TCGA-L9-A444 TCGA-MN-A4N1 
        7.82         6.97         2.50         3.81         0.20         9.37 
TCGA-MN-A4N4 TCGA-MN-A4N5 TCGA-MP-A4SV TCGA-MP-A4SW TCGA-MP-A4SY TCGA-MP-A4T2 
       20.42        11.61        86.14        58.45        49.35        37.35 
TCGA-MP-A4T4 TCGA-MP-A4T6 TCGA-MP-A4T7 TCGA-MP-A4T8 TCGA-MP-A4T9 TCGA-MP-A4TA 
       86.04        58.85         5.49         5.29        41.59        31.20 
TCGA-MP-A4TC TCGA-MP-A4TD TCGA-MP-A4TE TCGA-MP-A4TF TCGA-MP-A4TH TCGA-MP-A4TI 
        2.43        10.09        29.42        11.05         4.67        14.10 
TCGA-MP-A4TJ TCGA-MP-A5C7 
       11.15        48.99 

  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
             0.20              0.03 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            77.59            223.96 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
            13.61             12.66 
[1] "0.2 - 77.6 (13.6)"  "0.0 - 224.0 (12.7)"
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-05-4249        TCGA-05-4250        TCGA-05-4382        TCGA-05-4384 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4389        TCGA-05-4390        TCGA-05-4396        TCGA-05-4397 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-05-4398        TCGA-05-4402        TCGA-05-4403        TCGA-05-4405 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-05-4415        TCGA-05-4417        TCGA-05-4418        TCGA-05-4420 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4422        TCGA-05-4424        TCGA-05-4425        TCGA-05-4426 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4427        TCGA-05-4430        TCGA-05-4432        TCGA-05-4433 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-4434        TCGA-05-5420        TCGA-05-5423        TCGA-05-5425 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-05-5428        TCGA-05-5429        TCGA-05-5715        TCGA-35-3615 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-35-5375        TCGA-38-4625 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4626        TCGA-38-4627        TCGA-38-4628        TCGA-38-4629 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-4630        TCGA-38-4631        TCGA-38-4632        TCGA-38-6178 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-38-7271        TCGA-38-A44F        TCGA-44-2655        TCGA-44-2656 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3396 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-3398        TCGA-44-3918        TCGA-44-3919        TCGA-44-4112 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-5643        TCGA-44-5644        TCGA-44-5645        TCGA-44-6144 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6145        TCGA-44-6146        TCGA-44-6147        TCGA-44-6148 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6774        TCGA-44-6775        TCGA-44-6776        TCGA-44-6777 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-6778        TCGA-44-6779        TCGA-44-7659        TCGA-44-7660 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7661        TCGA-44-7662        TCGA-44-7667        TCGA-44-7669 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-7670        TCGA-44-7671        TCGA-44-7672        TCGA-44-8117 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-8119        TCGA-44-8120        TCGA-44-A479        TCGA-44-A47A 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A47B        TCGA-44-A47F        TCGA-44-A47G        TCGA-44-A4SS 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-44-A4SU        TCGA-49-4486        TCGA-49-4487        TCGA-49-4488 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4490        TCGA-49-4494        TCGA-49-4501        TCGA-49-4505 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4506        TCGA-49-4507        TCGA-49-4510        TCGA-49-4512 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-4514        TCGA-49-6742        TCGA-49-6743        TCGA-49-6744 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-49-6745        TCGA-49-6761        TCGA-50-5044        TCGA-50-5045 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5049        TCGA-50-5051        TCGA-50-5055        TCGA-50-5066 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-5068        TCGA-50-5072        TCGA-50-5930        TCGA-50-5931 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5932        TCGA-50-5933        TCGA-50-5935        TCGA-50-5936 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-5939        TCGA-50-5941        TCGA-50-5942        TCGA-50-5944 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-5946        TCGA-50-6590        TCGA-50-6591        TCGA-50-6592 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-50-6593        TCGA-50-6594        TCGA-50-6595        TCGA-50-6597 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-50-6673        TCGA-50-7109        TCGA-53-7624        TCGA-53-7626 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-53-7813        TCGA-53-A4EZ        TCGA-55-1592        TCGA-55-1594 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-55-5899        TCGA-55-6543 
  "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6642        TCGA-55-6712        TCGA-55-6968        TCGA-55-6969 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-6970        TCGA-55-6971        TCGA-55-6972        TCGA-55-6975 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6978        TCGA-55-6979        TCGA-55-6980        TCGA-55-6981 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6982        TCGA-55-6983        TCGA-55-6984        TCGA-55-6985 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-6986        TCGA-55-6987        TCGA-55-7281        TCGA-55-7283 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7573        TCGA-55-7574        TCGA-55-7576        TCGA-55-7725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-7726        TCGA-55-7727        TCGA-55-7728        TCGA-55-7815 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7903        TCGA-55-7907        TCGA-55-7910        TCGA-55-7911 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-7914        TCGA-55-7994        TCGA-55-7995        TCGA-55-8085 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8087        TCGA-55-8089        TCGA-55-8090        TCGA-55-8091 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-55-8092        TCGA-55-8094        TCGA-55-8096        TCGA-55-8097 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8206        TCGA-55-8207        TCGA-55-8299        TCGA-55-8301 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8302        TCGA-55-8505        TCGA-55-8506        TCGA-55-8510 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8511        TCGA-55-8512        TCGA-55-8513        TCGA-55-8514 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8615        TCGA-55-8616        TCGA-55-8619        TCGA-55-8620 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-8621        TCGA-55-A48X        TCGA-55-A48Y        TCGA-55-A48Z 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-55-A490        TCGA-55-A492        TCGA-55-A493        TCGA-55-A494 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-55-A4DF        TCGA-55-A4DG        TCGA-62-8394        TCGA-62-8395 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-62-8397        TCGA-62-8398        TCGA-62-8399        TCGA-62-8402 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46O        TCGA-62-A46P        TCGA-62-A46R        TCGA-62-A46S 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A46U        TCGA-62-A46V        TCGA-62-A470        TCGA-62-A471 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-62-A472        TCGA-64-1676        TCGA-64-1677        TCGA-64-1678 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-1679        TCGA-64-1680        TCGA-64-1681        TCGA-64-5774 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5775        TCGA-64-5778        TCGA-64-5779        TCGA-64-5781 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-64-5815        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-67-3773        TCGA-67-3774        TCGA-67-6215        TCGA-67-6216 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-67-6217        TCGA-69-7760        TCGA-69-7761        TCGA-69-7763 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-7764        TCGA-69-7765        TCGA-69-7973        TCGA-69-7974 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-69-7978        TCGA-69-7979        TCGA-69-7980        TCGA-69-8253 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-69-8254        TCGA-69-8255        TCGA-69-A59K        TCGA-71-6725 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4658        TCGA-73-4659        TCGA-73-4662        TCGA-73-4666 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4668        TCGA-73-4670        TCGA-73-4675        TCGA-73-4676 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-73-4677        TCGA-73-7498        TCGA-73-7499        TCGA-78-7143 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-78-7145        TCGA-78-7146        TCGA-78-7147        TCGA-78-7148 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7149        TCGA-78-7150        TCGA-78-7152        TCGA-78-7153 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7154        TCGA-78-7155        TCGA-78-7156        TCGA-78-7158 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7159        TCGA-78-7160        TCGA-78-7161        TCGA-78-7162 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7163        TCGA-78-7166        TCGA-78-7167        TCGA-78-7220 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" 
       TCGA-78-7535        TCGA-78-7536        TCGA-78-7537        TCGA-78-7539 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-7540        TCGA-78-7542        TCGA-78-7633        TCGA-78-8640 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-78-8648        TCGA-78-8655        TCGA-78-8660        TCGA-78-8662 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-83-5908        TCGA-86-6562        TCGA-86-7701        TCGA-86-7711 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-7713        TCGA-86-7953        TCGA-86-7955        TCGA-86-8054 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED"   "XQ LOSS MUTATED" 
       TCGA-86-8055        TCGA-86-8073        TCGA-86-8074        TCGA-86-8075 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8076        TCGA-86-8278        TCGA-86-8279        TCGA-86-8280 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8358        TCGA-86-8359        TCGA-86-8585        TCGA-86-8668 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8669        TCGA-86-8671        TCGA-86-8672        TCGA-86-8673 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-8674        TCGA-86-A456        TCGA-86-A4D0        TCGA-86-A4P7 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-86-A4P8        TCGA-91-6828        TCGA-91-6829        TCGA-91-6830 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6831        TCGA-91-6835        TCGA-91-6836        TCGA-91-6840 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-6847        TCGA-91-6848        TCGA-91-6849        TCGA-91-7771 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-8496        TCGA-91-8497        TCGA-91-8499        TCGA-91-A4BC 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-91-A4BD        TCGA-93-7347        TCGA-93-7348        TCGA-93-8067 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-95-7039        TCGA-95-7043        TCGA-95-7567        TCGA-95-7944 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-95-7947        TCGA-95-7948        TCGA-95-A4VK        TCGA-97-7546 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7547        TCGA-97-7552        TCGA-97-7553        TCGA-97-7554 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-7937        TCGA-97-7938        TCGA-97-7941        TCGA-97-8171 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8172        TCGA-97-8174        TCGA-97-8175        TCGA-97-8177 
  "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-97-8179        TCGA-97-A4M2        TCGA-97-A4M7        TCGA-99-7458 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
       TCGA-99-8025        TCGA-99-8028        TCGA-99-8032        TCGA-99-8033 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-8192        TCGA-J2-8194        TCGA-J2-A4AD        TCGA-J2-A4AE 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-J2-A4AG        TCGA-L4-A4E5        TCGA-L4-A4E6        TCGA-L9-A443 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-L9-A444        TCGA-MN-A4N1        TCGA-MN-A4N4        TCGA-MN-A4N5 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4SV        TCGA-MP-A4SW        TCGA-MP-A4SY        TCGA-MP-A4T2 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4T4        TCGA-MP-A4T6        TCGA-MP-A4T7        TCGA-MP-A4T8 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4T9        TCGA-MP-A4TA        TCGA-MP-A4TC        TCGA-MP-A4TD 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4TE        TCGA-MP-A4TF        TCGA-MP-A4TH        TCGA-MP-A4TI 
"XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" "XQ LOSS WILD-TYPE" 
       TCGA-MP-A4TJ        TCGA-MP-A4TK        TCGA-MP-A5C7 
"XQ LOSS WILD-TYPE"   "XQ LOSS MUTATED" "XQ LOSS WILD-TYPE" 
[1] "hr=" "1.1"
D80V2, continuous
                   vv
clus                STAGE I STAGE IA STAGE IB STAGE IIA STAGE IIB STAGE IIIA
  XQ LOSS MUTATED         1       12       19         2        10          7
  XQ LOSS WILD-TYPE       2      101      112        42        55         58
                   vv
clus                STAGE IIIB STAGE IV
  XQ LOSS MUTATED            3        1
  XQ LOSS WILD-TYPE          8       21
D80V3, multiclass
                   vv
clus                 T1  T2  T3  T4
  XQ LOSS MUTATED    14  33   6   2
  XQ LOSS WILD-TYPE 127 222  33  16
D80V4, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  T1              14               127
  T2              33               222
  T3               6                33
  T4               2                16
                   vv
clus                 N0  N1 N2+N3
  XQ LOSS MUTATED    34  11     8
  XQ LOSS WILD-TYPE 256  74    62
D80V5, multiclass
       clus
vv      XQ LOSS MUTATED XQ LOSS WILD-TYPE
  N0                 34               256
  N1                 11                74
  N2+N3               8                62
                   vv
clus                 M0  M1 M1A M1B  MX
  XQ LOSS MUTATED    44   2   0   0   9
  XQ LOSS WILD-TYPE 270  16   1   3 106
D80V6, multiclass
D80V7, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED    25  30
  XQ LOSS WILD-TYPE 219 181
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED     25   30
  XQ LOSS WILD-TYPE  219  181
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  FEMALE              25               219
  MALE                30               181
D80V8, continuous
                   vv
clus                LUNG ACINAR ADENOCARCINOMA
  XQ LOSS MUTATED                            2
  XQ LOSS WILD-TYPE                         11
                   vv
clus                LUNG ADENOCARCINOMA MIXED SUBTYPE
  XQ LOSS MUTATED                                  19
  XQ LOSS WILD-TYPE                                73
                   vv
clus                LUNG ADENOCARCINOMA- NOT OTHERWISE SPECIFIED (NOS)
  XQ LOSS MUTATED                                                   28
  XQ LOSS WILD-TYPE                                                264
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA MUCINOUS
  XQ LOSS MUTATED                                            0
  XQ LOSS WILD-TYPE                                          4
                   vv
clus                LUNG BRONCHIOLOALVEOLAR CARCINOMA NONMUCINOUS
  XQ LOSS MUTATED                                               3
  XQ LOSS WILD-TYPE                                            14
                   vv
clus                LUNG CLEAR CELL ADENOCARCINOMA
  XQ LOSS MUTATED                                1
  XQ LOSS WILD-TYPE                              1
                   vv
clus                LUNG MICROPAPILLARY ADENOCARCINOMA
  XQ LOSS MUTATED                                    0
  XQ LOSS WILD-TYPE                                  3
                   vv
clus                LUNG MUCINOUS ADENOCARCINOMA LUNG PAPILLARY ADENOCARCINOMA
  XQ LOSS MUTATED                              1                             0
  XQ LOSS WILD-TYPE                            1                            18
                   vv
clus                LUNG SIGNET RING ADENOCARCINOMA
  XQ LOSS MUTATED                                 0
  XQ LOSS WILD-TYPE                               1
                   vv
clus                LUNG SOLID PATTERN PREDOMINANT ADENOCARCINOMA
  XQ LOSS MUTATED                                               0
  XQ LOSS WILD-TYPE                                             4
                   vv
clus                MUCINOUS (COLLOID) CARCINOMA
  XQ LOSS MUTATED                              1
  XQ LOSS WILD-TYPE                            6
D80V9, multiclass
D80V10, binary
                   cls
clus                  0   1
  XQ LOSS MUTATED     5  50
  XQ LOSS WILD-TYPE  16 384
[1] "tbl2"
                   cls
clus                [,1] [,2]
  XQ LOSS MUTATED      5   50
  XQ LOSS WILD-TYPE   16  384
     clus
vv    XQ LOSS MUTATED XQ LOSS WILD-TYPE
  NO                5                16
  YES              50               384
D80V11, continuous
D80V12, continuous
                   vv
clus                 R0  R1  R2  RX
  XQ LOSS MUTATED    37   0   0   1
  XQ LOSS WILD-TYPE 275  10   4  17
D80V13, multiclass
    clus
vv   XQ LOSS MUTATED XQ LOSS WILD-TYPE
  R0              37               275
  R1               0                10
  R2               0                 4
  RX               1                17
> q(save="no")
