
R version 2.10.1 (2009-12-14)
Copyright (C) 2009 The R Foundation for Statistical Computing
ISBN 3-900051-07-0

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> source("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/Correlate_Genomic_Events.R")
> result <- main("/xchip/tcga/gdac_prod/applications/process_mgmt/firehose_task_registry/tcga-gdac/GDAC_Correlate_Genomic_Events/broadinstitute.org/cancer.genome.analysis/10441/13/", "-nF=/xchip/tcga/Tools/Nozzle/v1.current", "-tTRUE", "-iD=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/6161827/transformed.cor.cli.txt", "-iC=/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUAD-TP/6161529/LUAD-TP.transferedmergedcluster.txt", "-fF=", "-fC=3", "-fH=5", "-fW=9", "-fP=OUT", "-cP=0.05", "-cQ=0.25", "-MF=ONLYSIG", "-oT=LUAD-TP", "-nV=Nozzle.R1", "-OP=MUTSIG", "-iT=", "-iX=")
[1] "terrence_modification_tag"
[1] TRUE
[1] "nver"          "-nV=Nozzle.R1"
[1] "nfn"                                 "/xchip/tcga/Tools/Nozzle/v1.current"
[1] "Nozzle.R1"
[1] "successfully load Nozzle.R1"
[1] "ofn"         "-oT=LUAD-TP"
[1] "opt"        "-OP=MUTSIG"
[1] "tl"   "-iT="
[1] "dx"   "-iX="
[1] "opt"    "MUTSIG"
[1] "dx" ""  
[1] "cfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_mergedClustering/LUAD-TP/6161529/LUAD-TP.transferedmergedcluster.txt"
[1] "dfn:"
[1] "/xchip/cga/gdac-prod/tcga-gdac/jobResults/GDAC_Correlate_Genomic_Events_Preprocess/LUAD-TP/6161827/transformed.cor.cli.txt"

nPatients in clinical file=498, in cluster file=493, common to both=493
[1]  80 493
[1] "1P GAIN MUTATION ANALYSIS"
[1] 3
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              133               360 
  1P GAIN MUTATED 1P GAIN WILD-TYPE 
              133               360 
[1] "1Q GAIN MUTATION ANALYSIS"
[1] 3
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              297               196 
  1Q GAIN MUTATED 1Q GAIN WILD-TYPE 
              297               196 
[1] "2P GAIN MUTATION ANALYSIS"
[1] 3
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              148               345 
  2P GAIN MUTATED 2P GAIN WILD-TYPE 
              148               345 
[1] "2Q GAIN MUTATION ANALYSIS"
[1] 3
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              135               358 
  2Q GAIN MUTATED 2Q GAIN WILD-TYPE 
              135               358 
[1] "3P GAIN MUTATION ANALYSIS"
[1] 3
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               40               453 
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
               40               453 
[1] "3Q GAIN MUTATION ANALYSIS"
[1] 3
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               86               407 
  3Q GAIN MUTATED 3Q GAIN WILD-TYPE 
               86               407 
[1] "4P GAIN MUTATION ANALYSIS"
[1] 3
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               80               413 
  4P GAIN MUTATED 4P GAIN WILD-TYPE 
               80               413 
[1] "4Q GAIN MUTATION ANALYSIS"
[1] 3
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               46               447 
  4Q GAIN MUTATED 4Q GAIN WILD-TYPE 
               46               447 
[1] "5P GAIN MUTATION ANALYSIS"
[1] 3
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              267               226 
  5P GAIN MUTATED 5P GAIN WILD-TYPE 
              267               226 
[1] "5Q GAIN MUTATION ANALYSIS"
[1] 3
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              124               369 
  5Q GAIN MUTATED 5Q GAIN WILD-TYPE 
              124               369 
[1] "6P GAIN MUTATION ANALYSIS"
[1] 3
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              141               352 
  6P GAIN MUTATED 6P GAIN WILD-TYPE 
              141               352 
[1] "6Q GAIN MUTATION ANALYSIS"
[1] 3
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               60               433 
  6Q GAIN MUTATED 6Q GAIN WILD-TYPE 
               60               433 
[1] "7P GAIN MUTATION ANALYSIS"
[1] 3
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              251               242 
  7P GAIN MUTATED 7P GAIN WILD-TYPE 
              251               242 
[1] "7Q GAIN MUTATION ANALYSIS"
[1] 3
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              207               286 
  7Q GAIN MUTATED 7Q GAIN WILD-TYPE 
              207               286 
[1] "8P GAIN MUTATION ANALYSIS"
[1] 3
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              123               370 
  8P GAIN MUTATED 8P GAIN WILD-TYPE 
              123               370 
[1] "8Q GAIN MUTATION ANALYSIS"
[1] 3
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              235               258 
  8Q GAIN MUTATED 8Q GAIN WILD-TYPE 
              235               258 
[1] "9P GAIN MUTATION ANALYSIS"
[1] 3
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               42               451 
  9P GAIN MUTATED 9P GAIN WILD-TYPE 
               42               451 
[1] "9Q GAIN MUTATION ANALYSIS"
[1] 3
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               30               463 
  9Q GAIN MUTATED 9Q GAIN WILD-TYPE 
               30               463 
[1] "10P GAIN MUTATION ANALYSIS"
[1] 3
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               105                388 
  10P GAIN MUTATED 10P GAIN WILD-TYPE 
               105                388 
[1] "10Q GAIN MUTATION ANALYSIS"
[1] 3
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                76                417 
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                76                417 
[1] "11P GAIN MUTATION ANALYSIS"
[1] 3
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                92                401 
  11P GAIN MUTATED 11P GAIN WILD-TYPE 
                92                401 
[1] "11Q GAIN MUTATION ANALYSIS"
[1] 3
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
               112                381 
  11Q GAIN MUTATED 11Q GAIN WILD-TYPE 
               112                381 
[1] "12P GAIN MUTATION ANALYSIS"
[1] 3
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               131                362 
  12P GAIN MUTATED 12P GAIN WILD-TYPE 
               131                362 
[1] "12Q GAIN MUTATION ANALYSIS"
[1] 3
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               126                367 
  12Q GAIN MUTATED 12Q GAIN WILD-TYPE 
               126                367 
[1] "13Q GAIN MUTATION ANALYSIS"
[1] 3
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                43                450 
  13Q GAIN MUTATED 13Q GAIN WILD-TYPE 
                43                450 
[1] "14Q GAIN MUTATION ANALYSIS"
[1] 3
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               120                373 
  14Q GAIN MUTATED 14Q GAIN WILD-TYPE 
               120                373 
[1] "15Q GAIN MUTATION ANALYSIS"
[1] 3
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                35                458 
  15Q GAIN MUTATED 15Q GAIN WILD-TYPE 
                35                458 
[1] "16P GAIN MUTATION ANALYSIS"
[1] 3
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               127                366 
  16P GAIN MUTATED 16P GAIN WILD-TYPE 
               127                366 
[1] "16Q GAIN MUTATION ANALYSIS"
[1] 3
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                94                399 
  16Q GAIN MUTATED 16Q GAIN WILD-TYPE 
                94                399 
[1] "17P GAIN MUTATION ANALYSIS"
[1] 3
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                83                410 
  17P GAIN MUTATED 17P GAIN WILD-TYPE 
                83                410 
[1] "17Q GAIN MUTATION ANALYSIS"
[1] 3
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               186                307 
  17Q GAIN MUTATED 17Q GAIN WILD-TYPE 
               186                307 
[1] "18P GAIN MUTATION ANALYSIS"
[1] 3
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                91                402 
  18P GAIN MUTATED 18P GAIN WILD-TYPE 
                91                402 
[1] "18Q GAIN MUTATION ANALYSIS"
[1] 3
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                66                427 
  18Q GAIN MUTATED 18Q GAIN WILD-TYPE 
                66                427 
[1] "19P GAIN MUTATION ANALYSIS"
[1] 3
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                32                461 
  19P GAIN MUTATED 19P GAIN WILD-TYPE 
                32                461 
[1] "19Q GAIN MUTATION ANALYSIS"
[1] 3
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                71                422 
  19Q GAIN MUTATED 19Q GAIN WILD-TYPE 
                71                422 
[1] "20P GAIN MUTATION ANALYSIS"
[1] 3
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               164                329 
  20P GAIN MUTATED 20P GAIN WILD-TYPE 
               164                329 
[1] "20Q GAIN MUTATION ANALYSIS"
[1] 3
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               189                304 
  20Q GAIN MUTATED 20Q GAIN WILD-TYPE 
               189                304 
[1] "21Q GAIN MUTATION ANALYSIS"
[1] 3
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                94                399 
  21Q GAIN MUTATED 21Q GAIN WILD-TYPE 
                94                399 
[1] "22Q GAIN MUTATION ANALYSIS"
[1] 3
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                61                432 
  22Q GAIN MUTATED 22Q GAIN WILD-TYPE 
                61                432 
[1] "XQ GAIN MUTATION ANALYSIS"
[1] 3
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               68               425 
  XQ GAIN MUTATED XQ GAIN WILD-TYPE 
               68               425 
[1] "1P LOSS MUTATION ANALYSIS"
[1] 3
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               79               414 
  1P LOSS MUTATED 1P LOSS WILD-TYPE 
               79               414 
[1] "1Q LOSS MUTATION ANALYSIS"
[1] 3
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               28               465 
  1Q LOSS MUTATED 1Q LOSS WILD-TYPE 
               28               465 
[1] "2P LOSS MUTATION ANALYSIS"
[1] 3
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               24               469 
  2P LOSS MUTATED 2P LOSS WILD-TYPE 
               24               469 
[1] "2Q LOSS MUTATION ANALYSIS"
[1] 3
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               23               470 
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
               23               470 
[1] "3P LOSS MUTATION ANALYSIS"
[1] 3
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              205               288 
  3P LOSS MUTATED 3P LOSS WILD-TYPE 
              205               288 
[1] "3Q LOSS MUTATION ANALYSIS"
[1] 3
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
              140               353 
  3Q LOSS MUTATED 3Q LOSS WILD-TYPE 
              140               353 
[1] "4P LOSS MUTATION ANALYSIS"
[1] 3
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              116               377 
  4P LOSS MUTATED 4P LOSS WILD-TYPE 
              116               377 
[1] "4Q LOSS MUTATION ANALYSIS"
[1] 3
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              132               361 
  4Q LOSS MUTATED 4Q LOSS WILD-TYPE 
              132               361 
[1] "5P LOSS MUTATION ANALYSIS"
[1] 3
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               40               453 
  5P LOSS MUTATED 5P LOSS WILD-TYPE 
               40               453 
[1] "5Q LOSS MUTATION ANALYSIS"
[1] 3
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              137               356 
  5Q LOSS MUTATED 5Q LOSS WILD-TYPE 
              137               356 
[1] "6P LOSS MUTATION ANALYSIS"
[1] 3
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              101               392 
  6P LOSS MUTATED 6P LOSS WILD-TYPE 
              101               392 
[1] "6Q LOSS MUTATION ANALYSIS"
[1] 3
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              208               285 
  6Q LOSS MUTATED 6Q LOSS WILD-TYPE 
              208               285 
[1] "7P LOSS MUTATION ANALYSIS"
[1] 3
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               33               460 
  7P LOSS MUTATED 7P LOSS WILD-TYPE 
               33               460 
[1] "7Q LOSS MUTATION ANALYSIS"
[1] 3
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               39               454 
  7Q LOSS MUTATED 7Q LOSS WILD-TYPE 
               39               454 
[1] "8P LOSS MUTATION ANALYSIS"
[1] 3
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              191               302 
  8P LOSS MUTATED 8P LOSS WILD-TYPE 
              191               302 
[1] "8Q LOSS MUTATION ANALYSIS"
[1] 3
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               54               439 
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
               54               439 
[1] "9P LOSS MUTATION ANALYSIS"
[1] 3
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              254               239 
  9P LOSS MUTATED 9P LOSS WILD-TYPE 
              254               239 
[1] "9Q LOSS MUTATION ANALYSIS"
[1] 3
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              238               255 
  9Q LOSS MUTATED 9Q LOSS WILD-TYPE 
              238               255 
[1] "10P LOSS MUTATION ANALYSIS"
[1] 3
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               108                385 
  10P LOSS MUTATED 10P LOSS WILD-TYPE 
               108                385 
[1] "10Q LOSS MUTATION ANALYSIS"
[1] 3
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               128                365 
  10Q LOSS MUTATED 10Q LOSS WILD-TYPE 
               128                365 
[1] "11P LOSS MUTATION ANALYSIS"
[1] 3
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               108                385 
  11P LOSS MUTATED 11P LOSS WILD-TYPE 
               108                385 
[1] "11Q LOSS MUTATION ANALYSIS"
[1] 3
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                88                405 
  11Q LOSS MUTATED 11Q LOSS WILD-TYPE 
                88                405 
[1] "12P LOSS MUTATION ANALYSIS"
[1] 3
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
               106                387 
  12P LOSS MUTATED 12P LOSS WILD-TYPE 
               106                387 
[1] "12Q LOSS MUTATION ANALYSIS"
[1] 3
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                93                400 
  12Q LOSS MUTATED 12Q LOSS WILD-TYPE 
                93                400 
[1] "13Q LOSS MUTATION ANALYSIS"
[1] 3
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               243                250 
  13Q LOSS MUTATED 13Q LOSS WILD-TYPE 
               243                250 
[1] "14Q LOSS MUTATION ANALYSIS"
[1] 3
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               111                382 
  14Q LOSS MUTATED 14Q LOSS WILD-TYPE 
               111                382 
[1] "15Q LOSS MUTATION ANALYSIS"
[1] 3
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               233                260 
  15Q LOSS MUTATED 15Q LOSS WILD-TYPE 
               233                260 
[1] "16P LOSS MUTATION ANALYSIS"
[1] 3
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               108                385 
  16P LOSS MUTATED 16P LOSS WILD-TYPE 
               108                385 
[1] "16Q LOSS MUTATION ANALYSIS"
[1] 3
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               137                356 
  16Q LOSS MUTATED 16Q LOSS WILD-TYPE 
               137                356 
[1] "17P LOSS MUTATION ANALYSIS"
[1] 3
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               206                287 
  17P LOSS MUTATED 17P LOSS WILD-TYPE 
               206                287 
[1] "17Q LOSS MUTATION ANALYSIS"
[1] 3
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                55                438 
  17Q LOSS MUTATED 17Q LOSS WILD-TYPE 
                55                438 
[1] "18P LOSS MUTATION ANALYSIS"
[1] 3
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               169                324 
  18P LOSS MUTATED 18P LOSS WILD-TYPE 
               169                324 
[1] "18Q LOSS MUTATION ANALYSIS"
[1] 3
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               207                286 
  18Q LOSS MUTATED 18Q LOSS WILD-TYPE 
               207                286 
[1] "19P LOSS MUTATION ANALYSIS"
[1] 3
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               235                258 
  19P LOSS MUTATED 19P LOSS WILD-TYPE 
               235                258 
[1] "19Q LOSS MUTATION ANALYSIS"
[1] 3
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               153                340 
  19Q LOSS MUTATED 19Q LOSS WILD-TYPE 
               153                340 
[1] "20P LOSS MUTATION ANALYSIS"
[1] 3
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
               114                379 
  20P LOSS MUTATED 20P LOSS WILD-TYPE 
               114                379 
[1] "20Q LOSS MUTATION ANALYSIS"
[1] 3
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                67                426 
  20Q LOSS MUTATED 20Q LOSS WILD-TYPE 
                67                426 
[1] "21Q LOSS MUTATION ANALYSIS"
[1] 3
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               157                336 
  21Q LOSS MUTATED 21Q LOSS WILD-TYPE 
               157                336 
[1] "22Q LOSS MUTATION ANALYSIS"
[1] 3
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               212                281 
  22Q LOSS MUTATED 22Q LOSS WILD-TYPE 
               212                281 
[1] "XQ LOSS MUTATION ANALYSIS"
[1] 3
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               64               429 
  XQ LOSS MUTATED XQ LOSS WILD-TYPE 
               64               429 
[1] "terrence_modification_tag"
[1] TRUE
[1] "data2feature, selection="
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"

Input Data has 12 rows and 493 columns.

Variable 1:'MRNA_CNMF':	nDistinctValues=4,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 2:'MRNA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 3:'CN_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 4:'METHLYATION_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 5:'RPPA_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 6:'RPPA_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 7:'MRNASEQ_CNMF':	nDistinctValues=5,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 8:'MRNASEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 9:'MIRSEQ_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 10:'MIRSEQ_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 11:'MIRSEQ_MATURE_CNMF':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
Variable 12:'MIRSEQ_MATURE_CHIERARCHICAL':	nDistinctValues=3,	numeric=FALSE,	binary=FALSE,	exclude=FALSE.
[1] "rownames(nsurv.mat)"
 [1] "MRNA_CNMF"                   "MRNA_CHIERARCHICAL"         
 [3] "CN_CNMF"                     "METHLYATION_CNMF"           
 [5] "RPPA_CNMF"                   "RPPA_CHIERARCHICAL"         
 [7] "MRNASEQ_CNMF"                "MRNASEQ_CHIERARCHICAL"      
 [9] "MIRSEQ_CNMF"                 "MIRSEQ_CHIERARCHICAL"       
[11] "MIRSEQ_MATURE_CNMF"          "MIRSEQ_MATURE_CHIERARCHICAL"
[1] "TUMOR.?STAGE"
[1] "TUMOR.?GRADE"
[1] "PATHOLOGY.T"
[1] "PATHOLOGY.N"
Output Data has 493 columns, 0 survival variables, and 12 non-survival variables.
MRNA_CNMF, nv=4, binary=FALSE, numeric=FALSE
MRNA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
CN_CNMF, nv=3, binary=FALSE, numeric=FALSE
METHLYATION_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CNMF, nv=3, binary=FALSE, numeric=FALSE
RPPA_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MRNASEQ_CNMF, nv=5, binary=FALSE, numeric=FALSE
MRNASEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CNMF, nv=3, binary=FALSE, numeric=FALSE
MIRSEQ_MATURE_CHIERARCHICAL, nv=3, binary=FALSE, numeric=FALSE

Clustering(1) Variable = 1P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P GAIN MUTATED        0      3      1      1
  1P GAIN WILD-TYPE      5      6     11      5
D1V1, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                 6
  CLUS_3               1                11
  CLUS_4               1                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED        1      2      2
  1P GAIN WILD-TYPE      6     11     10
D1V2, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               2                11
  CLUS_3               2                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       79     35     19
  1P GAIN WILD-TYPE    107    181     72
D1V3, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              79               107
  CLUS_2              35               181
  CLUS_3              19                72
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       34     45     40
  1P GAIN WILD-TYPE    107     95    110
D1V4, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              34               107
  CLUS_2              45                95
  CLUS_3              40               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       36     16     18
  1P GAIN WILD-TYPE     58     52     55
D1V5, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              36                58
  CLUS_2              16                52
  CLUS_3              18                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       43     16     11
  1P GAIN WILD-TYPE     63     54     48
D1V6, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              43                63
  CLUS_2              16                54
  CLUS_3              11                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P GAIN MUTATED       49     28     15     27     14
  1P GAIN WILD-TYPE     89     84     61     79     40
D1V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       47     46     40
  1P GAIN WILD-TYPE     72    165    116
D1V8, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              47                72
  CLUS_2              46               165
  CLUS_3              40               116
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       42     60     29
  1P GAIN WILD-TYPE    137    171     49
D1V9, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              42               137
  CLUS_2              60               171
  CLUS_3              29                49
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       13     67     51
  1P GAIN WILD-TYPE     38    182    137
D1V10, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              13                38
  CLUS_2              67               182
  CLUS_3              51               137
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       49     47     23
  1P GAIN WILD-TYPE    106    145     55
D1V11, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              49               106
  CLUS_2              47               145
  CLUS_3              23                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P GAIN MUTATED       11     53     55
  1P GAIN WILD-TYPE     38    135    133
D1V12, multiclass
        clus
vv       1P GAIN MUTATED 1P GAIN WILD-TYPE
  CLUS_1              11                38
  CLUS_2              53               135
  CLUS_3              55               133

Clustering(2) Variable = 1Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q GAIN MUTATED        0      6      5      3
  1Q GAIN WILD-TYPE      5      3      7      3
D2V1, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               6                 3
  CLUS_3               5                 7
  CLUS_4               3                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED        3      6      5
  1Q GAIN WILD-TYPE      4      7      7
D2V2, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1               3                 4
  CLUS_2               6                 7
  CLUS_3               5                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED      123    111     63
  1Q GAIN WILD-TYPE     63    105     28
D2V3, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1             123                63
  CLUS_2             111               105
  CLUS_3              63                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       98     90     74
  1Q GAIN WILD-TYPE     43     50     76
D2V4, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              98                43
  CLUS_2              90                50
  CLUS_3              74                76
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       57     51     32
  1Q GAIN WILD-TYPE     37     17     41
D2V5, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              57                37
  CLUS_2              51                17
  CLUS_3              32                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       62     50     28
  1Q GAIN WILD-TYPE     44     20     31
D2V6, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              62                44
  CLUS_2              50                20
  CLUS_3              28                31
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q GAIN MUTATED       79     73     38     71     31
  1Q GAIN WILD-TYPE     59     39     38     35     23
D2V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       73    127     92
  1Q GAIN WILD-TYPE     46     84     64
D2V8, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              73                46
  CLUS_2             127                84
  CLUS_3              92                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED      105    145     44
  1Q GAIN WILD-TYPE     74     86     34
D2V9, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1             105                74
  CLUS_2             145                86
  CLUS_3              44                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       25    158    111
  1Q GAIN WILD-TYPE     26     91     77
D2V10, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              25                26
  CLUS_2             158                91
  CLUS_3             111                77
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED      106    117     38
  1Q GAIN WILD-TYPE     49     75     40
D2V11, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1             106                49
  CLUS_2             117                75
  CLUS_3              38                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q GAIN MUTATED       24    115    122
  1Q GAIN WILD-TYPE     25     73     66
D2V12, multiclass
        clus
vv       1Q GAIN MUTATED 1Q GAIN WILD-TYPE
  CLUS_1              24                25
  CLUS_2             115                73
  CLUS_3             122                66

Clustering(3) Variable = 2P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P GAIN MUTATED        3      3      3      4
  2P GAIN WILD-TYPE      2      6      9      2
D3V1, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               3                 2
  CLUS_2               3                 6
  CLUS_3               3                 9
  CLUS_4               4                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        5      3      5
  2P GAIN WILD-TYPE      2     10      7
D3V2, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               5                 2
  CLUS_2               3                10
  CLUS_3               5                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       74     36     38
  2P GAIN WILD-TYPE    112    180     53
D3V3, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              74               112
  CLUS_2              36               180
  CLUS_3              38                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       56     39     29
  2P GAIN WILD-TYPE     85    101    121
D3V4, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              56                85
  CLUS_2              39               101
  CLUS_3              29               121
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       25     20     26
  2P GAIN WILD-TYPE     69     48     47
D3V5, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              25                69
  CLUS_2              20                48
  CLUS_3              26                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       33     17     21
  2P GAIN WILD-TYPE     73     53     38
D3V6, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              33                73
  CLUS_2              17                53
  CLUS_3              21                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P GAIN MUTATED       40     18     25     49     16
  2P GAIN WILD-TYPE     98     94     51     57     38
D3V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       34     44     70
  2P GAIN WILD-TYPE     85    167     86
D3V8, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              34                85
  CLUS_2              44               167
  CLUS_3              70                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       37     96     14
  2P GAIN WILD-TYPE    142    135     64
D3V9, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              37               142
  CLUS_2              96               135
  CLUS_3              14                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED        6     98     43
  2P GAIN WILD-TYPE     45    151    145
D3V10, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1               6                45
  CLUS_2              98               151
  CLUS_3              43               145
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       35     72     16
  2P GAIN WILD-TYPE    120    120     62
D3V11, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              35               120
  CLUS_2              72               120
  CLUS_3              16                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P GAIN MUTATED       10     75     38
  2P GAIN WILD-TYPE     39    113    150
D3V12, multiclass
        clus
vv       2P GAIN MUTATED 2P GAIN WILD-TYPE
  CLUS_1              10                39
  CLUS_2              75               113
  CLUS_3              38               150

Clustering(4) Variable = 2Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q GAIN MUTATED        0      3      3      4
  2Q GAIN WILD-TYPE      5      6      9      2
D4V1, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                 6
  CLUS_3               3                 9
  CLUS_4               4                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        4      3      3
  2Q GAIN WILD-TYPE      3     10      9
D4V2, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               4                 3
  CLUS_2               3                10
  CLUS_3               3                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       60     37     38
  2Q GAIN WILD-TYPE    126    179     53
D4V3, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              60               126
  CLUS_2              37               179
  CLUS_3              38                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       51     37     26
  2Q GAIN WILD-TYPE     90    103    124
D4V4, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              51                90
  CLUS_2              37               103
  CLUS_3              26               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       26     20     17
  2Q GAIN WILD-TYPE     68     48     56
D4V5, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              26                68
  CLUS_2              20                48
  CLUS_3              17                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       31     17     15
  2Q GAIN WILD-TYPE     75     53     44
D4V6, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              31                75
  CLUS_2              17                53
  CLUS_3              15                44
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q GAIN MUTATED       34     23     24     39     15
  2Q GAIN WILD-TYPE    104     89     52     67     39
D4V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       31     44     60
  2Q GAIN WILD-TYPE     88    167     96
D4V8, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              31                88
  CLUS_2              44               167
  CLUS_3              60                96
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       38     81     15
  2Q GAIN WILD-TYPE    141    150     63
D4V9, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              38               141
  CLUS_2              81               150
  CLUS_3              15                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        7     85     42
  2Q GAIN WILD-TYPE     44    164    146
D4V10, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                44
  CLUS_2              85               164
  CLUS_3              42               146
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED       35     63     15
  2Q GAIN WILD-TYPE    120    129     63
D4V11, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1              35               120
  CLUS_2              63               129
  CLUS_3              15                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q GAIN MUTATED        7     67     39
  2Q GAIN WILD-TYPE     42    121    149
D4V12, multiclass
        clus
vv       2Q GAIN MUTATED 2Q GAIN WILD-TYPE
  CLUS_1               7                42
  CLUS_2              67               121
  CLUS_3              39               149

Clustering(5) Variable = 3P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P GAIN MUTATED        0      0      0      1
  3P GAIN WILD-TYPE      5      9     12      5
D5V1, multiclass
[1] "Remove cluster labels:" "3P GAIN MUTATED"       
clus
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        1      0      0
  3P GAIN WILD-TYPE      6     13     12
D5V2, multiclass
[1] "Remove cluster labels:" "3P GAIN MUTATED"       
clus
  3P GAIN MUTATED 3P GAIN WILD-TYPE 
                1                31 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1676 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
       TCGA-67-3772        TCGA-67-3773        TCGA-67-3774 
"3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" "3P GAIN WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       23      8      9
  3P GAIN WILD-TYPE    163    208     82
D5V3, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              23               163
  CLUS_2               8               208
  CLUS_3               9                82
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       11     19      6
  3P GAIN WILD-TYPE    130    121    144
D5V4, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              11               130
  CLUS_2              19               121
  CLUS_3               6               144
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        8      2      9
  3P GAIN WILD-TYPE     86     66     64
D5V5, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               8                86
  CLUS_2               2                66
  CLUS_3               9                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       11      2      6
  3P GAIN WILD-TYPE     95     68     53
D5V6, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              11                95
  CLUS_2               2                68
  CLUS_3               6                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P GAIN MUTATED       20      0      3     12      5
  3P GAIN WILD-TYPE    118    112     73     94     49
D5V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       16      7     17
  3P GAIN WILD-TYPE    103    204    139
D5V8, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              16               103
  CLUS_2               7               204
  CLUS_3              17               139
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       11     26      3
  3P GAIN WILD-TYPE    168    205     75
D5V9, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              11               168
  CLUS_2              26               205
  CLUS_3               3                75
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        2     26     12
  3P GAIN WILD-TYPE     49    223    176
D5V10, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                49
  CLUS_2              26               223
  CLUS_3              12               176
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED       12     21      3
  3P GAIN WILD-TYPE    143    171     75
D5V11, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1              12               143
  CLUS_2              21               171
  CLUS_3               3                75
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P GAIN MUTATED        2     23     11
  3P GAIN WILD-TYPE     47    165    177
D5V12, multiclass
        clus
vv       3P GAIN MUTATED 3P GAIN WILD-TYPE
  CLUS_1               2                47
  CLUS_2              23               165
  CLUS_3              11               177

Clustering(6) Variable = 3Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q GAIN MUTATED        0      3      0      1
  3Q GAIN WILD-TYPE      5      6     12      5
D6V1, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                 6
  CLUS_3               0                12
  CLUS_4               1                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        1      0      3
  3Q GAIN WILD-TYPE      6     13      9
D6V2, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               0                13
  CLUS_3               3                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       41     23     22
  3Q GAIN WILD-TYPE    145    193     69
D6V3, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              41               145
  CLUS_2              23               193
  CLUS_3              22                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       31     26     20
  3Q GAIN WILD-TYPE    110    114    130
D6V4, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              31               110
  CLUS_2              26               114
  CLUS_3              20               130
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       17      6     19
  3Q GAIN WILD-TYPE     77     62     54
D6V5, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              17                77
  CLUS_2               6                62
  CLUS_3              19                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       22      7     13
  3Q GAIN WILD-TYPE     84     63     46
D6V6, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              22                84
  CLUS_2               7                63
  CLUS_3              13                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q GAIN MUTATED       34      2     16     23     10
  3Q GAIN WILD-TYPE    104    110     60     83     44
D6V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       29     18     38
  3Q GAIN WILD-TYPE     90    193    118
D6V8, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              29                90
  CLUS_2              18               193
  CLUS_3              38               118
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       23     53     10
  3Q GAIN WILD-TYPE    156    178     68
D6V9, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              23               156
  CLUS_2              53               178
  CLUS_3              10                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        6     55     25
  3Q GAIN WILD-TYPE     45    194    163
D6V10, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               6                45
  CLUS_2              55               194
  CLUS_3              25               163
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED       20     46      9
  3Q GAIN WILD-TYPE    135    146     69
D6V11, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1              20               135
  CLUS_2              46               146
  CLUS_3               9                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q GAIN MUTATED        7     44     24
  3Q GAIN WILD-TYPE     42    144    164
D6V12, multiclass
        clus
vv       3Q GAIN MUTATED 3Q GAIN WILD-TYPE
  CLUS_1               7                42
  CLUS_2              44               144
  CLUS_3              24               164

Clustering(7) Variable = 4P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P GAIN MUTATED        1      3      2      1
  4P GAIN WILD-TYPE      4      6     10      5
D7V1, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               3                 6
  CLUS_3               2                10
  CLUS_4               1                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        2      3      2
  4P GAIN WILD-TYPE      5     10     10
D7V2, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               3                10
  CLUS_3               2                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       48     18     14
  4P GAIN WILD-TYPE    138    198     77
D7V3, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              48               138
  CLUS_2              18               198
  CLUS_3              14                77
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       32     23     17
  4P GAIN WILD-TYPE    109    117    133
D7V4, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              32               109
  CLUS_2              23               117
  CLUS_3              17               133
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       16      9     17
  4P GAIN WILD-TYPE     78     59     56
D7V5, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              16                78
  CLUS_2               9                59
  CLUS_3              17                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       21      7     14
  4P GAIN WILD-TYPE     85     63     45
D7V6, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              21                85
  CLUS_2               7                63
  CLUS_3              14                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P GAIN MUTATED       32     10     13     17      7
  4P GAIN WILD-TYPE    106    102     63     89     47
D7V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       28     24     27
  4P GAIN WILD-TYPE     91    187    129
D7V8, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              28                91
  CLUS_2              24               187
  CLUS_3              27               129
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       21     43     16
  4P GAIN WILD-TYPE    158    188     62
D7V9, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              21               158
  CLUS_2              43               188
  CLUS_3              16                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       11     45     24
  4P GAIN WILD-TYPE     40    204    164
D7V10, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              11                40
  CLUS_2              45               204
  CLUS_3              24               164
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED       21     34     15
  4P GAIN WILD-TYPE    134    158     63
D7V11, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1              21               134
  CLUS_2              34               158
  CLUS_3              15                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P GAIN MUTATED        9     36     25
  4P GAIN WILD-TYPE     40    152    163
D7V12, multiclass
        clus
vv       4P GAIN MUTATED 4P GAIN WILD-TYPE
  CLUS_1               9                40
  CLUS_2              36               152
  CLUS_3              25               163

Clustering(8) Variable = 4Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q GAIN MUTATED        0      3      2      0
  4Q GAIN WILD-TYPE      5      6     10      6
D8V1, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                 6
  CLUS_3               2                10
  CLUS_4               0                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        0      3      2
  4Q GAIN WILD-TYPE      7     10     10
D8V2, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               3                10
  CLUS_3               2                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       27     13      6
  4Q GAIN WILD-TYPE    159    203     85
D8V3, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              27               159
  CLUS_2              13               203
  CLUS_3               6                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       13     12     15
  4Q GAIN WILD-TYPE    128    128    135
D8V4, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              13               128
  CLUS_2              12               128
  CLUS_3              15               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       10      4      9
  4Q GAIN WILD-TYPE     84     64     64
D8V5, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              10                84
  CLUS_2               4                64
  CLUS_3               9                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       12      4      7
  4Q GAIN WILD-TYPE     94     66     52
D8V6, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              12                94
  CLUS_2               4                66
  CLUS_3               7                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q GAIN MUTATED       24      5      5      7      5
  4Q GAIN WILD-TYPE    114    107     71     99     49
D8V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       19     15     12
  4Q GAIN WILD-TYPE    100    196    144
D8V8, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              19               100
  CLUS_2              15               196
  CLUS_3              12               144
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       11     21     14
  4Q GAIN WILD-TYPE    168    210     64
D8V9, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              11               168
  CLUS_2              21               210
  CLUS_3              14                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        8     23     15
  4Q GAIN WILD-TYPE     43    226    173
D8V10, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               8                43
  CLUS_2              23               226
  CLUS_3              15               173
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED       10     18     11
  4Q GAIN WILD-TYPE    145    174     67
D8V11, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1              10               145
  CLUS_2              18               174
  CLUS_3              11                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q GAIN MUTATED        6     20     13
  4Q GAIN WILD-TYPE     43    168    175
D8V12, multiclass
        clus
vv       4Q GAIN MUTATED 4Q GAIN WILD-TYPE
  CLUS_1               6                43
  CLUS_2              20               168
  CLUS_3              13               175

Clustering(9) Variable = 5P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P GAIN MUTATED        3      4      7      2
  5P GAIN WILD-TYPE      2      5      5      4
D9V1, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 2
  CLUS_2               4                 5
  CLUS_3               7                 5
  CLUS_4               2                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED        3      8      5
  5P GAIN WILD-TYPE      4      5      7
D9V2, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1               3                 4
  CLUS_2               8                 5
  CLUS_3               5                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED      135     84     48
  5P GAIN WILD-TYPE     51    132     43
D9V3, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1             135                51
  CLUS_2              84               132
  CLUS_3              48                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       81     77     80
  5P GAIN WILD-TYPE     60     63     70
D9V4, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              81                60
  CLUS_2              77                63
  CLUS_3              80                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       59     38     35
  5P GAIN WILD-TYPE     35     30     38
D9V5, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              59                35
  CLUS_2              38                30
  CLUS_3              35                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       63     36     33
  5P GAIN WILD-TYPE     43     34     26
D9V6, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              63                43
  CLUS_2              36                34
  CLUS_3              33                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P GAIN MUTATED       86     54     31     61     30
  5P GAIN WILD-TYPE     52     58     45     45     24
D9V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       73    100     89
  5P GAIN WILD-TYPE     46    111     67
D9V8, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              73                46
  CLUS_2             100               111
  CLUS_3              89                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       84    136     45
  5P GAIN WILD-TYPE     95     95     33
D9V9, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              84                95
  CLUS_2             136                95
  CLUS_3              45                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       30    144     91
  5P GAIN WILD-TYPE     21    105     97
D9V10, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              30                21
  CLUS_2             144               105
  CLUS_3              91                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       75    115     45
  5P GAIN WILD-TYPE     80     77     33
D9V11, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              75                80
  CLUS_2             115                77
  CLUS_3              45                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P GAIN MUTATED       29    115     91
  5P GAIN WILD-TYPE     20     73     97
D9V12, multiclass
        clus
vv       5P GAIN MUTATED 5P GAIN WILD-TYPE
  CLUS_1              29                20
  CLUS_2             115                73
  CLUS_3              91                97

Clustering(10) Variable = 5Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q GAIN MUTATED        3      3      5      0
  5Q GAIN WILD-TYPE      2      6      7      6
D10V1, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               3                 2
  CLUS_2               3                 6
  CLUS_3               5                 7
  CLUS_4               0                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED        1      6      4
  5Q GAIN WILD-TYPE      6      7      8
D10V2, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               6                 7
  CLUS_3               4                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       59     52     13
  5Q GAIN WILD-TYPE    127    164     78
D10V3, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              59               127
  CLUS_2              52               164
  CLUS_3              13                78
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       33     34     43
  5Q GAIN WILD-TYPE    108    106    107
D10V4, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              33               108
  CLUS_2              34               106
  CLUS_3              43               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       26     23     11
  5Q GAIN WILD-TYPE     68     45     62
D10V5, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              26                68
  CLUS_2              23                45
  CLUS_3              11                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       29     20     11
  5Q GAIN WILD-TYPE     77     50     48
D10V6, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              29                77
  CLUS_2              20                50
  CLUS_3              11                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q GAIN MUTATED       33     39     11     20     18
  5Q GAIN WILD-TYPE    105     73     65     86     36
D10V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       27     63     31
  5Q GAIN WILD-TYPE     92    148    125
D10V8, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              27                92
  CLUS_2              63               148
  CLUS_3              31               125
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       51     49     23
  5Q GAIN WILD-TYPE    128    182     55
D10V9, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              51               128
  CLUS_2              49               182
  CLUS_3              23                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       17     49     57
  5Q GAIN WILD-TYPE     34    200    131
D10V10, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              17                34
  CLUS_2              49               200
  CLUS_3              57               131
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       47     37     23
  5Q GAIN WILD-TYPE    108    155     55
D10V11, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              47               108
  CLUS_2              37               155
  CLUS_3              23                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q GAIN MUTATED       15     37     55
  5Q GAIN WILD-TYPE     34    151    133
D10V12, multiclass
        clus
vv       5Q GAIN MUTATED 5Q GAIN WILD-TYPE
  CLUS_1              15                34
  CLUS_2              37               151
  CLUS_3              55               133

Clustering(11) Variable = 6P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P GAIN MUTATED        1      2      4      4
  6P GAIN WILD-TYPE      4      7      8      2
D11V1, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               2                 7
  CLUS_3               4                 8
  CLUS_4               4                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED        5      4      2
  6P GAIN WILD-TYPE      2      9     10
D11V2, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1               5                 2
  CLUS_2               4                 9
  CLUS_3               2                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       62     40     39
  6P GAIN WILD-TYPE    124    176     52
D11V3, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              62               124
  CLUS_2              40               176
  CLUS_3              39                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       56     44     21
  6P GAIN WILD-TYPE     85     96    129
D11V4, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              56                85
  CLUS_2              44                96
  CLUS_3              21               129
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       19     25     26
  6P GAIN WILD-TYPE     75     43     47
D11V5, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              19                75
  CLUS_2              25                43
  CLUS_3              26                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       30     20     20
  6P GAIN WILD-TYPE     76     50     39
D11V6, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              30                76
  CLUS_2              20                50
  CLUS_3              20                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P GAIN MUTATED       34     31     17     41     15
  6P GAIN WILD-TYPE    104     81     59     65     39
D11V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       31     58     49
  6P GAIN WILD-TYPE     88    153    107
D11V8, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              31                88
  CLUS_2              58               153
  CLUS_3              49               107
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       39     78     21
  6P GAIN WILD-TYPE    140    153     57
D11V9, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              39               140
  CLUS_2              78               153
  CLUS_3              21                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       14     85     39
  6P GAIN WILD-TYPE     37    164    149
D11V10, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              14                37
  CLUS_2              85               164
  CLUS_3              39               149
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       35     65     21
  6P GAIN WILD-TYPE    120    127     57
D11V11, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              35               120
  CLUS_2              65               127
  CLUS_3              21                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P GAIN MUTATED       15     68     38
  6P GAIN WILD-TYPE     34    120    150
D11V12, multiclass
        clus
vv       6P GAIN MUTATED 6P GAIN WILD-TYPE
  CLUS_1              15                34
  CLUS_2              68               120
  CLUS_3              38               150

Clustering(12) Variable = 6Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q GAIN MUTATED        0      1      1      1
  6Q GAIN WILD-TYPE      5      8     11      5
D12V1, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               1                 8
  CLUS_3               1                11
  CLUS_4               1                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        1      1      1
  6Q GAIN WILD-TYPE      6     12     11
D12V2, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               1                12
  CLUS_3               1                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       29     16     15
  6Q GAIN WILD-TYPE    157    200     76
D12V3, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              29               157
  CLUS_2              16               200
  CLUS_3              15                76
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       25     18      9
  6Q GAIN WILD-TYPE    116    122    141
D12V4, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              25               116
  CLUS_2              18               122
  CLUS_3               9               141
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        7     11     11
  6Q GAIN WILD-TYPE     87     57     62
D12V5, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               7                87
  CLUS_2              11                57
  CLUS_3              11                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       13      8      8
  6Q GAIN WILD-TYPE     93     62     51
D12V6, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              13                93
  CLUS_2               8                62
  CLUS_3               8                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q GAIN MUTATED       15     15      8     19      3
  6Q GAIN WILD-TYPE    123     97     68     87     51
D12V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       11     23     26
  6Q GAIN WILD-TYPE    108    188    130
D12V8, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11               108
  CLUS_2              23               188
  CLUS_3              26               130
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       11     40      8
  6Q GAIN WILD-TYPE    168    191     70
D12V9, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              11               168
  CLUS_2              40               191
  CLUS_3               8                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        6     44      9
  6Q GAIN WILD-TYPE     45    205    179
D12V10, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                45
  CLUS_2              44               205
  CLUS_3               9               179
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED       14     28     10
  6Q GAIN WILD-TYPE    141    164     68
D12V11, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1              14               141
  CLUS_2              28               164
  CLUS_3              10                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q GAIN MUTATED        6     34     12
  6Q GAIN WILD-TYPE     43    154    176
D12V12, multiclass
        clus
vv       6Q GAIN MUTATED 6Q GAIN WILD-TYPE
  CLUS_1               6                43
  CLUS_2              34               154
  CLUS_3              12               176

Clustering(13) Variable = 7P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P GAIN MUTATED        3      5      6      2
  7P GAIN WILD-TYPE      2      4      6      4
D13V1, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               3                 2
  CLUS_2               5                 4
  CLUS_3               6                 6
  CLUS_4               2                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED        2      7      7
  7P GAIN WILD-TYPE      5      6      5
D13V2, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               7                 6
  CLUS_3               7                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED      145     72     34
  7P GAIN WILD-TYPE     41    144     57
D13V3, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1             145                41
  CLUS_2              72               144
  CLUS_3              34                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       65     87     65
  7P GAIN WILD-TYPE     76     53     85
D13V4, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              65                76
  CLUS_2              87                53
  CLUS_3              65                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       60     23     43
  7P GAIN WILD-TYPE     34     45     30
D13V5, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              60                34
  CLUS_2              23                45
  CLUS_3              43                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       66     24     36
  7P GAIN WILD-TYPE     40     46     23
D13V6, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              66                40
  CLUS_2              24                46
  CLUS_3              36                23
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P GAIN MUTATED      103     32     38     47     27
  7P GAIN WILD-TYPE     35     80     38     59     27
D13V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       92     79     76
  7P GAIN WILD-TYPE     27    132     80
D13V8, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              92                27
  CLUS_2              79               132
  CLUS_3              76                80
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       66    130     52
  7P GAIN WILD-TYPE    113    101     26
D13V9, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              66               113
  CLUS_2             130               101
  CLUS_3              52                26
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       32    140     76
  7P GAIN WILD-TYPE     19    109    112
D13V10, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              32                19
  CLUS_2             140               109
  CLUS_3              76               112
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       59    106     49
  7P GAIN WILD-TYPE     96     86     29
D13V11, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              59                96
  CLUS_2             106                86
  CLUS_3              49                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P GAIN MUTATED       34    108     72
  7P GAIN WILD-TYPE     15     80    116
D13V12, multiclass
        clus
vv       7P GAIN MUTATED 7P GAIN WILD-TYPE
  CLUS_1              34                15
  CLUS_2             108                80
  CLUS_3              72               116

Clustering(14) Variable = 7Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q GAIN MUTATED        2      6      4      2
  7Q GAIN WILD-TYPE      3      3      8      4
D14V1, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                 3
  CLUS_2               6                 3
  CLUS_3               4                 8
  CLUS_4               2                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED        2      5      7
  7Q GAIN WILD-TYPE      5      8      5
D14V2, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               5                 8
  CLUS_3               7                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED      114     63     30
  7Q GAIN WILD-TYPE     72    153     61
D14V3, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1             114                72
  CLUS_2              63               153
  CLUS_3              30                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       52     70     55
  7Q GAIN WILD-TYPE     89     70     95
D14V4, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              52                89
  CLUS_2              70                70
  CLUS_3              55                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       48     24     31
  7Q GAIN WILD-TYPE     46     44     42
D14V5, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              48                46
  CLUS_2              24                44
  CLUS_3              31                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       52     25     26
  7Q GAIN WILD-TYPE     54     45     33
D14V6, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              52                54
  CLUS_2              25                45
  CLUS_3              26                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q GAIN MUTATED       87     27     33     34     22
  7Q GAIN WILD-TYPE     51     85     43     72     32
D14V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       77     65     61
  7Q GAIN WILD-TYPE     42    146     95
D14V8, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              77                42
  CLUS_2              65               146
  CLUS_3              61                95
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       57    108     39
  7Q GAIN WILD-TYPE    122    123     39
D14V9, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              57               122
  CLUS_2             108               123
  CLUS_3              39                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       24    119     61
  7Q GAIN WILD-TYPE     27    130    127
D14V10, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              24                27
  CLUS_2             119               130
  CLUS_3              61               127
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       49     89     36
  7Q GAIN WILD-TYPE    106    103     42
D14V11, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              49               106
  CLUS_2              89               103
  CLUS_3              36                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q GAIN MUTATED       24     91     59
  7Q GAIN WILD-TYPE     25     97    129
D14V12, multiclass
        clus
vv       7Q GAIN MUTATED 7Q GAIN WILD-TYPE
  CLUS_1              24                25
  CLUS_2              91                97
  CLUS_3              59               129

Clustering(15) Variable = 8P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P GAIN MUTATED        0      2      1      3
  8P GAIN WILD-TYPE      5      7     11      3
D15V1, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               2                 7
  CLUS_3               1                11
  CLUS_4               3                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED        3      2      1
  8P GAIN WILD-TYPE      4     11     11
D15V2, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1               3                 4
  CLUS_2               2                11
  CLUS_3               1                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       33     41     49
  8P GAIN WILD-TYPE    153    175     42
D15V3, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              33               153
  CLUS_2              41               175
  CLUS_3              49                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       43     38     28
  8P GAIN WILD-TYPE     98    102    122
D15V4, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              43                98
  CLUS_2              38               102
  CLUS_3              28               122
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       21     20     22
  8P GAIN WILD-TYPE     73     48     51
D15V5, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              21                73
  CLUS_2              20                48
  CLUS_3              22                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       24     20     19
  8P GAIN WILD-TYPE     82     50     40
D15V6, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              24                82
  CLUS_2              20                50
  CLUS_3              19                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P GAIN MUTATED       29     17     19     41     12
  8P GAIN WILD-TYPE    109     95     57     65     42
D15V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       25     41     52
  8P GAIN WILD-TYPE     94    170    104
D15V8, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              25                94
  CLUS_2              41               170
  CLUS_3              52               104
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       39     60     22
  8P GAIN WILD-TYPE    140    171     56
D15V9, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              39               140
  CLUS_2              60               171
  CLUS_3              22                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       13     68     40
  8P GAIN WILD-TYPE     38    181    148
D15V10, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              13                38
  CLUS_2              68               181
  CLUS_3              40               148
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       38     52     19
  8P GAIN WILD-TYPE    117    140     59
D15V11, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              38               117
  CLUS_2              52               140
  CLUS_3              19                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P GAIN MUTATED       11     51     47
  8P GAIN WILD-TYPE     38    137    141
D15V12, multiclass
        clus
vv       8P GAIN MUTATED 8P GAIN WILD-TYPE
  CLUS_1              11                38
  CLUS_2              51               137
  CLUS_3              47               141

Clustering(16) Variable = 8Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q GAIN MUTATED        3      6      2      5
  8Q GAIN WILD-TYPE      2      3     10      1
D16V1, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               3                 2
  CLUS_2               6                 3
  CLUS_3               2                10
  CLUS_4               5                 1
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED        6      3      7
  8Q GAIN WILD-TYPE      1     10      5
D16V2, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1               6                 1
  CLUS_2               3                10
  CLUS_3               7                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       92     64     79
  8Q GAIN WILD-TYPE     94    152     12
D16V3, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              92                94
  CLUS_2              64               152
  CLUS_3              79                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       82     76     49
  8Q GAIN WILD-TYPE     59     64    101
D16V4, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              82                59
  CLUS_2              76                64
  CLUS_3              49               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       42     29     40
  8Q GAIN WILD-TYPE     52     39     33
D16V5, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              42                52
  CLUS_2              29                39
  CLUS_3              40                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       52     25     34
  8Q GAIN WILD-TYPE     54     45     25
D16V6, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              52                54
  CLUS_2              25                45
  CLUS_3              34                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q GAIN MUTATED       68     33     32     74     21
  8Q GAIN WILD-TYPE     70     79     44     32     33
D16V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       60     75     93
  8Q GAIN WILD-TYPE     59    136     63
D16V8, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              60                59
  CLUS_2              75               136
  CLUS_3              93                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       60    134     39
  8Q GAIN WILD-TYPE    119     97     39
D16V9, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              60               119
  CLUS_2             134                97
  CLUS_3              39                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       21    144     68
  8Q GAIN WILD-TYPE     30    105    120
D16V10, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              21                30
  CLUS_2             144               105
  CLUS_3              68               120
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       56    112     37
  8Q GAIN WILD-TYPE     99     80     41
D16V11, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              56                99
  CLUS_2             112                80
  CLUS_3              37                41
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q GAIN MUTATED       23    114     68
  8Q GAIN WILD-TYPE     26     74    120
D16V12, multiclass
        clus
vv       8Q GAIN MUTATED 8Q GAIN WILD-TYPE
  CLUS_1              23                26
  CLUS_2             114                74
  CLUS_3              68               120

Clustering(17) Variable = 9P GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P GAIN MUTATED        0      0      0      0
  9P GAIN WILD-TYPE      5      9     12      6
D17V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        0      0      0
  9P GAIN WILD-TYPE      7     13     12
D17V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       20     10     12
  9P GAIN WILD-TYPE    166    206     79
D17V3, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              20               166
  CLUS_2              10               206
  CLUS_3              12                79
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       16     16      8
  9P GAIN WILD-TYPE    125    124    142
D17V4, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              16               125
  CLUS_2              16               124
  CLUS_3               8               142
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        5      7      4
  9P GAIN WILD-TYPE     89     61     69
D17V5, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               5                89
  CLUS_2               7                61
  CLUS_3               4                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        6      7      3
  9P GAIN WILD-TYPE    100     63     56
D17V6, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               6               100
  CLUS_2               7                63
  CLUS_3               3                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P GAIN MUTATED       14      4      0     16      7
  9P GAIN WILD-TYPE    124    108     76     90     47
D17V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       11     15     15
  9P GAIN WILD-TYPE    108    196    141
D17V8, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              11               108
  CLUS_2              15               196
  CLUS_3              15               141
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       11     25      5
  9P GAIN WILD-TYPE    168    206     73
D17V9, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              11               168
  CLUS_2              25               206
  CLUS_3               5                73
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        3     24     14
  9P GAIN WILD-TYPE     48    225    174
D17V10, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               3                48
  CLUS_2              24               225
  CLUS_3              14               174
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED       13     23      4
  9P GAIN WILD-TYPE    142    169     74
D17V11, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1              13               142
  CLUS_2              23               169
  CLUS_3               4                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P GAIN MUTATED        4     23     13
  9P GAIN WILD-TYPE     45    165    175
D17V12, multiclass
        clus
vv       9P GAIN MUTATED 9P GAIN WILD-TYPE
  CLUS_1               4                45
  CLUS_2              23               165
  CLUS_3              13               175

Clustering(18) Variable = 9Q GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q GAIN MUTATED        0      0      0      0
  9Q GAIN WILD-TYPE      5      9     12      6
D18V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        0      0      0
  9Q GAIN WILD-TYPE      7     13     12
D18V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       15      9      6
  9Q GAIN WILD-TYPE    171    207     85
D18V3, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              15               171
  CLUS_2               9               207
  CLUS_3               6                85
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       13      9      7
  9Q GAIN WILD-TYPE    128    131    143
D18V4, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              13               128
  CLUS_2               9               131
  CLUS_3               7               143
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        4      4      6
  9Q GAIN WILD-TYPE     90     64     67
D18V5, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               4                90
  CLUS_2               4                64
  CLUS_3               6                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        5      4      5
  9Q GAIN WILD-TYPE    101     66     54
D18V6, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               5               101
  CLUS_2               4                66
  CLUS_3               5                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q GAIN MUTATED        8      3      2     11      5
  9Q GAIN WILD-TYPE    130    109     74     95     49
D18V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        8     11     10
  9Q GAIN WILD-TYPE    111    200    146
D18V8, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8               111
  CLUS_2              11               200
  CLUS_3              10               146
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        8     17      4
  9Q GAIN WILD-TYPE    171    214     74
D18V9, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               8               171
  CLUS_2              17               214
  CLUS_3               4                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        2     17     10
  9Q GAIN WILD-TYPE     49    232    178
D18V10, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               2                49
  CLUS_2              17               232
  CLUS_3              10               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED       10     16      3
  9Q GAIN WILD-TYPE    145    176     75
D18V11, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1              10               145
  CLUS_2              16               176
  CLUS_3               3                75
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q GAIN MUTATED        3     17      9
  9Q GAIN WILD-TYPE     46    171    179
D18V12, multiclass
        clus
vv       9Q GAIN MUTATED 9Q GAIN WILD-TYPE
  CLUS_1               3                46
  CLUS_2              17               171
  CLUS_3               9               179

Clustering(19) Variable = 10P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P GAIN MUTATED        0      2      0      1
  10P GAIN WILD-TYPE      5      7     12      5
D19V1, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                  7
  CLUS_3                0                 12
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        1      0      2
  10P GAIN WILD-TYPE      6     13     10
D19V2, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                0                 13
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       46     30     29
  10P GAIN WILD-TYPE    140    186     62
D19V3, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               46                140
  CLUS_2               30                186
  CLUS_3               29                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       38     41     14
  10P GAIN WILD-TYPE    103     99    136
D19V4, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               38                103
  CLUS_2               41                 99
  CLUS_3               14                136
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       15     23     22
  10P GAIN WILD-TYPE     79     45     51
D19V5, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               15                 79
  CLUS_2               23                 45
  CLUS_3               22                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       17     20     23
  10P GAIN WILD-TYPE     89     50     36
D19V6, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               17                 89
  CLUS_2               20                 50
  CLUS_3               23                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P GAIN MUTATED       27     10     20     37      9
  10P GAIN WILD-TYPE    111    102     56     69     45
D19V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       21     29     53
  10P GAIN WILD-TYPE     98    182    103
D19V8, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               21                 98
  CLUS_2               29                182
  CLUS_3               53                103
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       26     62     15
  10P GAIN WILD-TYPE    153    169     63
D19V9, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               26                153
  CLUS_2               62                169
  CLUS_3               15                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        7     69     27
  10P GAIN WILD-TYPE     44    180    161
D19V10, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                7                 44
  CLUS_2               69                180
  CLUS_3               27                161
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED       27     53     13
  10P GAIN WILD-TYPE    128    139     65
D19V11, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1               27                128
  CLUS_2               53                139
  CLUS_3               13                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P GAIN MUTATED        9     55     29
  10P GAIN WILD-TYPE     40    133    159
D19V12, multiclass
        clus
vv       10P GAIN MUTATED 10P GAIN WILD-TYPE
  CLUS_1                9                 40
  CLUS_2               55                133
  CLUS_3               29                159

Clustering(20) Variable = 10Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q GAIN MUTATED        0      2      0      0
  10Q GAIN WILD-TYPE      5      7     12      6
D20V1, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                 30 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4123         TCGA-44-2655 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-67-3770         TCGA-67-3771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        0      0      2
  10Q GAIN WILD-TYPE      7     13     10
D20V2, multiclass
[1] "Remove cluster labels:" "10Q GAIN MUTATED"      
clus
  10Q GAIN MUTATED 10Q GAIN WILD-TYPE 
                 2                 30 
        TCGA-05-4244         TCGA-05-4249         TCGA-05-4250 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-35-3615         TCGA-35-4123         TCGA-44-2655 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2656         TCGA-44-2657         TCGA-44-2659 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2661         TCGA-44-2662         TCGA-44-2665 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-2666         TCGA-44-2668         TCGA-44-3398 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-44-3919         TCGA-44-4112         TCGA-55-1592 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-55-1594         TCGA-55-1595         TCGA-55-1596 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1676         TCGA-64-1677         TCGA-64-1678 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-64-1680         TCGA-67-3770         TCGA-67-3771 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
        TCGA-67-3772         TCGA-67-3773         TCGA-67-3774 
"10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" "10Q GAIN WILD-TYPE" 
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       30     25     21
  10Q GAIN WILD-TYPE    156    191     70
D20V3, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               30                156
  CLUS_2               25                191
  CLUS_3               21                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       27     29     11
  10Q GAIN WILD-TYPE    114    111    139
D20V4, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               27                114
  CLUS_2               29                111
  CLUS_3               11                139
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12     15     13
  10Q GAIN WILD-TYPE     82     53     60
D20V5, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                 82
  CLUS_2               15                 53
  CLUS_3               13                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       12     16     12
  10Q GAIN WILD-TYPE     94     54     47
D20V6, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               12                 94
  CLUS_2               16                 54
  CLUS_3               12                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q GAIN MUTATED       17      7     16     28      6
  10Q GAIN WILD-TYPE    121    105     60     78     48
D20V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       17     23     34
  10Q GAIN WILD-TYPE    102    188    122
D20V8, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               17                102
  CLUS_2               23                188
  CLUS_3               34                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       22     40     12
  10Q GAIN WILD-TYPE    157    191     66
D20V9, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               22                157
  CLUS_2               40                191
  CLUS_3               12                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        4     46     24
  10Q GAIN WILD-TYPE     47    203    164
D20V10, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                4                 47
  CLUS_2               46                203
  CLUS_3               24                164
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED       20     37     10
  10Q GAIN WILD-TYPE    135    155     68
D20V11, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1               20                135
  CLUS_2               37                155
  CLUS_3               10                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q GAIN MUTATED        7     33     27
  10Q GAIN WILD-TYPE     42    155    161
D20V12, multiclass
        clus
vv       10Q GAIN MUTATED 10Q GAIN WILD-TYPE
  CLUS_1                7                 42
  CLUS_2               33                155
  CLUS_3               27                161

Clustering(21) Variable = 11P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P GAIN MUTATED        0      0      2      4
  11P GAIN WILD-TYPE      5      9     10      2
D21V1, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                0                  9
  CLUS_3                2                 10
  CLUS_4                4                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED        4      2      0
  11P GAIN WILD-TYPE      3     11     12
D21V2, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1                4                  3
  CLUS_2                2                 11
  CLUS_3                0                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       45     21     26
  11P GAIN WILD-TYPE    141    195     65
D21V3, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               45                141
  CLUS_2               21                195
  CLUS_3               26                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       28     28     24
  11P GAIN WILD-TYPE    113    112    126
D21V4, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               28                113
  CLUS_2               28                112
  CLUS_3               24                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       22     11     15
  11P GAIN WILD-TYPE     72     57     58
D21V5, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               22                 72
  CLUS_2               11                 57
  CLUS_3               15                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       23     11     14
  11P GAIN WILD-TYPE     83     59     45
D21V6, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               23                 83
  CLUS_2               11                 59
  CLUS_3               14                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P GAIN MUTATED       27     16     12     28      9
  11P GAIN WILD-TYPE    111     96     64     78     45
D21V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       23     29     40
  11P GAIN WILD-TYPE     96    182    116
D21V8, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               23                 96
  CLUS_2               29                182
  CLUS_3               40                116
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       18     52     21
  11P GAIN WILD-TYPE    161    179     57
D21V9, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               18                161
  CLUS_2               52                179
  CLUS_3               21                 57
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       15     56     20
  11P GAIN WILD-TYPE     36    193    168
D21V10, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                 36
  CLUS_2               56                193
  CLUS_3               20                168
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       15     42     22
  11P GAIN WILD-TYPE    140    150     56
D21V11, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               15                140
  CLUS_2               42                150
  CLUS_3               22                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P GAIN MUTATED       16     41     22
  11P GAIN WILD-TYPE     33    147    166
D21V12, multiclass
        clus
vv       11P GAIN MUTATED 11P GAIN WILD-TYPE
  CLUS_1               16                 33
  CLUS_2               41                147
  CLUS_3               22                166

Clustering(22) Variable = 11Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q GAIN MUTATED        0      2      2      5
  11Q GAIN WILD-TYPE      5      7     10      1
D22V1, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                  7
  CLUS_3                2                 10
  CLUS_4                5                  1
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED        5      3      1
  11Q GAIN WILD-TYPE      2     10     11
D22V2, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1                5                  2
  CLUS_2                3                 10
  CLUS_3                1                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       63     23     26
  11Q GAIN WILD-TYPE    123    193     65
D22V3, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               63                123
  CLUS_2               23                193
  CLUS_3               26                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       31     40     26
  11Q GAIN WILD-TYPE    110    100    124
D22V4, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               31                110
  CLUS_2               40                100
  CLUS_3               26                124
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       25     12     21
  11Q GAIN WILD-TYPE     69     56     52
D22V5, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               25                 69
  CLUS_2               12                 56
  CLUS_3               21                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       28     13     17
  11Q GAIN WILD-TYPE     78     57     42
D22V6, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               28                 78
  CLUS_2               13                 57
  CLUS_3               17                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q GAIN MUTATED       40     17     11     34     10
  11Q GAIN WILD-TYPE     98     95     65     72     44
D22V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       35     30     47
  11Q GAIN WILD-TYPE     84    181    109
D22V8, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               35                 84
  CLUS_2               30                181
  CLUS_3               47                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       21     65     23
  11Q GAIN WILD-TYPE    158    166     55
D22V9, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               21                158
  CLUS_2               65                166
  CLUS_3               23                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       18     67     24
  11Q GAIN WILD-TYPE     33    182    164
D22V10, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               18                 33
  CLUS_2               67                182
  CLUS_3               24                164
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       19     51     25
  11Q GAIN WILD-TYPE    136    141     53
D22V11, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               19                136
  CLUS_2               51                141
  CLUS_3               25                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q GAIN MUTATED       17     49     29
  11Q GAIN WILD-TYPE     32    139    159
D22V12, multiclass
        clus
vv       11Q GAIN MUTATED 11Q GAIN WILD-TYPE
  CLUS_1               17                 32
  CLUS_2               49                139
  CLUS_3               29                159

Clustering(23) Variable = 12P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P GAIN MUTATED        1      3      1      3
  12P GAIN WILD-TYPE      4      6     11      3
D23V1, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                  6
  CLUS_3                1                 11
  CLUS_4                3                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED        4      1      3
  12P GAIN WILD-TYPE      3     12      9
D23V2, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1                4                  3
  CLUS_2                1                 12
  CLUS_3                3                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       50     38     43
  12P GAIN WILD-TYPE    136    178     48
D23V3, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               50                136
  CLUS_2               38                178
  CLUS_3               43                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       47     38     31
  12P GAIN WILD-TYPE     94    102    119
D23V4, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               47                 94
  CLUS_2               38                102
  CLUS_3               31                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       23     10     26
  12P GAIN WILD-TYPE     71     58     47
D23V5, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               23                 71
  CLUS_2               10                 58
  CLUS_3               26                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       26     11     22
  12P GAIN WILD-TYPE     80     59     37
D23V6, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               26                 80
  CLUS_2               11                 59
  CLUS_3               22                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P GAIN MUTATED       40      5     30     42     12
  12P GAIN WILD-TYPE     98    107     46     64     42
D23V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       30     28     71
  12P GAIN WILD-TYPE     89    183     85
D23V8, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               30                 89
  CLUS_2               28                183
  CLUS_3               71                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       28     83     18
  12P GAIN WILD-TYPE    151    148     60
D23V9, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               28                151
  CLUS_2               83                148
  CLUS_3               18                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       11     88     30
  12P GAIN WILD-TYPE     40    161    158
D23V10, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               11                 40
  CLUS_2               88                161
  CLUS_3               30                158
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       18     73     23
  12P GAIN WILD-TYPE    137    119     55
D23V11, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               18                137
  CLUS_2               73                119
  CLUS_3               23                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P GAIN MUTATED       13     75     26
  12P GAIN WILD-TYPE     36    113    162
D23V12, multiclass
        clus
vv       12P GAIN MUTATED 12P GAIN WILD-TYPE
  CLUS_1               13                 36
  CLUS_2               75                113
  CLUS_3               26                162

Clustering(24) Variable = 12Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q GAIN MUTATED        1      3      1      3
  12Q GAIN WILD-TYPE      4      6     11      3
D24V1, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                  6
  CLUS_3                1                 11
  CLUS_4                3                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED        4      2      2
  12Q GAIN WILD-TYPE      3     11     10
D24V2, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1                4                  3
  CLUS_2                2                 11
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       41     39     46
  12Q GAIN WILD-TYPE    145    177     45
D24V3, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               41                145
  CLUS_2               39                177
  CLUS_3               46                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       47     36     28
  12Q GAIN WILD-TYPE     94    104    122
D24V4, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               47                 94
  CLUS_2               36                104
  CLUS_3               28                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       23     14     25
  12Q GAIN WILD-TYPE     71     54     48
D24V5, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               23                 71
  CLUS_2               14                 54
  CLUS_3               25                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       25     14     23
  12Q GAIN WILD-TYPE     81     56     36
D24V6, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               25                 81
  CLUS_2               14                 56
  CLUS_3               23                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q GAIN MUTATED       31      6     29     49      9
  12Q GAIN WILD-TYPE    107    106     47     57     45
D24V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       27     26     71
  12Q GAIN WILD-TYPE     92    185     85
D24V8, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               27                 92
  CLUS_2               26                185
  CLUS_3               71                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       27     81     16
  12Q GAIN WILD-TYPE    152    150     62
D24V9, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               27                152
  CLUS_2               81                150
  CLUS_3               16                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       12     86     26
  12Q GAIN WILD-TYPE     39    163    162
D24V10, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               12                 39
  CLUS_2               86                163
  CLUS_3               26                162
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       17     68     24
  12Q GAIN WILD-TYPE    138    124     54
D24V11, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               17                138
  CLUS_2               68                124
  CLUS_3               24                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q GAIN MUTATED       16     68     25
  12Q GAIN WILD-TYPE     33    120    163
D24V12, multiclass
        clus
vv       12Q GAIN MUTATED 12Q GAIN WILD-TYPE
  CLUS_1               16                 33
  CLUS_2               68                120
  CLUS_3               25                163

Clustering(25) Variable = 13Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q GAIN MUTATED        0      1      4      2
  13Q GAIN WILD-TYPE      5      8      8      4
D25V1, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                1                  8
  CLUS_3                4                  8
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        2      4      1
  13Q GAIN WILD-TYPE      5      9     11
D25V2, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                4                  9
  CLUS_3                1                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       14     21      8
  13Q GAIN WILD-TYPE    172    195     83
D25V3, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               14                172
  CLUS_2               21                195
  CLUS_3                8                 83
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       20      9      5
  13Q GAIN WILD-TYPE    121    131    145
D25V4, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               20                121
  CLUS_2                9                131
  CLUS_3                5                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3      9      7
  13Q GAIN WILD-TYPE     91     59     66
D25V5, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 91
  CLUS_2                9                 59
  CLUS_3                7                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        4      9      6
  13Q GAIN WILD-TYPE    102     61     53
D25V6, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                4                102
  CLUS_2                9                 61
  CLUS_3                6                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q GAIN MUTATED        7     12     12      9      2
  13Q GAIN WILD-TYPE    131    100     64     97     52
D25V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        5     19     18
  13Q GAIN WILD-TYPE    114    192    138
D25V8, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                114
  CLUS_2               19                192
  CLUS_3               18                138
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       16     20      6
  13Q GAIN WILD-TYPE    163    211     72
D25V9, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               16                163
  CLUS_2               20                211
  CLUS_3                6                 72
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        5     22     15
  13Q GAIN WILD-TYPE     46    227    173
D25V10, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                5                 46
  CLUS_2               22                227
  CLUS_3               15                173
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED       14     14      6
  13Q GAIN WILD-TYPE    141    178     72
D25V11, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1               14                141
  CLUS_2               14                178
  CLUS_3                6                 72
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q GAIN MUTATED        3     17     14
  13Q GAIN WILD-TYPE     46    171    174
D25V12, multiclass
        clus
vv       13Q GAIN MUTATED 13Q GAIN WILD-TYPE
  CLUS_1                3                 46
  CLUS_2               17                171
  CLUS_3               14                174

Clustering(26) Variable = 14Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q GAIN MUTATED        1      1      2      2
  14Q GAIN WILD-TYPE      4      8     10      4
D26V1, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                1                  8
  CLUS_3                2                 10
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED        2      2      2
  14Q GAIN WILD-TYPE      5     11     10
D26V2, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                2                 11
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       47     30     43
  14Q GAIN WILD-TYPE    139    186     48
D26V3, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               47                139
  CLUS_2               30                186
  CLUS_3               43                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       46     34     27
  14Q GAIN WILD-TYPE     95    106    123
D26V4, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               46                 95
  CLUS_2               34                106
  CLUS_3               27                123
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       20     14     23
  14Q GAIN WILD-TYPE     74     54     50
D26V5, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               20                 74
  CLUS_2               14                 54
  CLUS_3               23                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       21     16     20
  14Q GAIN WILD-TYPE     85     54     39
D26V6, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               21                 85
  CLUS_2               16                 54
  CLUS_3               20                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q GAIN MUTATED       37     19      9     42     11
  14Q GAIN WILD-TYPE    101     93     67     64     43
D26V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       30     37     51
  14Q GAIN WILD-TYPE     89    174    105
D26V8, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               30                 89
  CLUS_2               37                174
  CLUS_3               51                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       23     69     25
  14Q GAIN WILD-TYPE    156    162     53
D26V9, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               23                156
  CLUS_2               69                162
  CLUS_3               25                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       18     74     25
  14Q GAIN WILD-TYPE     33    175    163
D26V10, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               18                 33
  CLUS_2               74                175
  CLUS_3               25                163
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       23     55     27
  14Q GAIN WILD-TYPE    132    137     51
D26V11, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               23                132
  CLUS_2               55                137
  CLUS_3               27                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q GAIN MUTATED       16     55     34
  14Q GAIN WILD-TYPE     33    133    154
D26V12, multiclass
        clus
vv       14Q GAIN MUTATED 14Q GAIN WILD-TYPE
  CLUS_1               16                 33
  CLUS_2               55                133
  CLUS_3               34                154

Clustering(27) Variable = 15Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q GAIN MUTATED        0      0      1      2
  15Q GAIN WILD-TYPE      5      9     11      4
D27V1, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                0                  9
  CLUS_3                1                 11
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2      1      0
  15Q GAIN WILD-TYPE      5     12     12
D27V2, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                1                 12
  CLUS_3                0                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       12     19      4
  15Q GAIN WILD-TYPE    174    197     87
D27V3, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               12                174
  CLUS_2               19                197
  CLUS_3                4                 87
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       12      6      9
  15Q GAIN WILD-TYPE    129    134    141
D27V4, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               12                129
  CLUS_2                6                134
  CLUS_3                9                141
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        6      6      8
  15Q GAIN WILD-TYPE     88     62     65
D27V5, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                 88
  CLUS_2                6                 62
  CLUS_3                8                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        6      7      7
  15Q GAIN WILD-TYPE    100     63     52
D27V6, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                6                100
  CLUS_2                7                 63
  CLUS_3                7                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q GAIN MUTATED        3      5     19      6      2
  15Q GAIN WILD-TYPE    135    107     57    100     52
D27V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2     12     21
  15Q GAIN WILD-TYPE    117    199    135
D27V8, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                117
  CLUS_2               12                199
  CLUS_3               21                135
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       14     16      4
  15Q GAIN WILD-TYPE    165    215     74
D27V9, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               14                165
  CLUS_2               16                215
  CLUS_3                4                 74
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        3     16     15
  15Q GAIN WILD-TYPE     48    233    173
D27V10, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                3                 48
  CLUS_2               16                233
  CLUS_3               15                173
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED       12      8      7
  15Q GAIN WILD-TYPE    143    184     71
D27V11, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1               12                143
  CLUS_2                8                184
  CLUS_3                7                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q GAIN MUTATED        2     11     14
  15Q GAIN WILD-TYPE     47    177    174
D27V12, multiclass
        clus
vv       15Q GAIN MUTATED 15Q GAIN WILD-TYPE
  CLUS_1                2                 47
  CLUS_2               11                177
  CLUS_3               14                174

Clustering(28) Variable = 16P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P GAIN MUTATED        3      3      3      1
  16P GAIN WILD-TYPE      2      6      9      5
D28V1, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                3                  2
  CLUS_2                3                  6
  CLUS_3                3                  9
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED        1      3      6
  16P GAIN WILD-TYPE      6     10      6
D28V2, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                3                 10
  CLUS_3                6                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       64     43     20
  16P GAIN WILD-TYPE    122    173     71
D28V3, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               64                122
  CLUS_2               43                173
  CLUS_3               20                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       36     35     38
  16P GAIN WILD-TYPE    105    105    112
D28V4, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               36                105
  CLUS_2               35                105
  CLUS_3               38                112
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       27     13     15
  16P GAIN WILD-TYPE     67     55     58
D28V5, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               27                 67
  CLUS_2               13                 55
  CLUS_3               15                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       30     11     14
  16P GAIN WILD-TYPE     76     59     45
D28V6, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               30                 76
  CLUS_2               11                 59
  CLUS_3               14                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P GAIN MUTATED       37     36     15     21     16
  16P GAIN WILD-TYPE    101     76     61     85     38
D28V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       33     60     32
  16P GAIN WILD-TYPE     86    151    124
D28V8, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               33                 86
  CLUS_2               60                151
  CLUS_3               32                124
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       39     56     31
  16P GAIN WILD-TYPE    140    175     47
D28V9, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               39                140
  CLUS_2               56                175
  CLUS_3               31                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       22     64     40
  16P GAIN WILD-TYPE     29    185    148
D28V10, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               22                 29
  CLUS_2               64                185
  CLUS_3               40                148
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       40     41     28
  16P GAIN WILD-TYPE    115    151     50
D28V11, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               40                115
  CLUS_2               41                151
  CLUS_3               28                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P GAIN MUTATED       16     48     45
  16P GAIN WILD-TYPE     33    140    143
D28V12, multiclass
        clus
vv       16P GAIN MUTATED 16P GAIN WILD-TYPE
  CLUS_1               16                 33
  CLUS_2               48                140
  CLUS_3               45                143

Clustering(29) Variable = 16Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q GAIN MUTATED        1      3      1      2
  16Q GAIN WILD-TYPE      4      6     11      4
D29V1, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                  6
  CLUS_3                1                 11
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED        2      1      4
  16Q GAIN WILD-TYPE      5     12      8
D29V2, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                1                 12
  CLUS_3                4                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       50     29     15
  16Q GAIN WILD-TYPE    136    187     76
D29V3, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               50                136
  CLUS_2               29                187
  CLUS_3               15                 76
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       26     25     29
  16Q GAIN WILD-TYPE    115    115    121
D29V4, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               26                115
  CLUS_2               25                115
  CLUS_3               29                121
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       23      7     13
  16Q GAIN WILD-TYPE     71     61     60
D29V5, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               23                 71
  CLUS_2                7                 61
  CLUS_3               13                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       25      7     11
  16Q GAIN WILD-TYPE     81     63     48
D29V6, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               25                 81
  CLUS_2                7                 63
  CLUS_3               11                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q GAIN MUTATED       24     27     15     15     11
  16Q GAIN WILD-TYPE    114     85     61     91     43
D29V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       21     43     28
  16Q GAIN WILD-TYPE     98    168    128
D29V8, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               21                 98
  CLUS_2               43                168
  CLUS_3               28                128
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       25     42     26
  16Q GAIN WILD-TYPE    154    189     52
D29V9, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               25                154
  CLUS_2               42                189
  CLUS_3               26                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       18     50     25
  16Q GAIN WILD-TYPE     33    199    163
D29V10, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               18                 33
  CLUS_2               50                199
  CLUS_3               25                163
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       29     28     23
  16Q GAIN WILD-TYPE    126    164     55
D29V11, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               29                126
  CLUS_2               28                164
  CLUS_3               23                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q GAIN MUTATED       11     34     35
  16Q GAIN WILD-TYPE     38    154    153
D29V12, multiclass
        clus
vv       16Q GAIN MUTATED 16Q GAIN WILD-TYPE
  CLUS_1               11                 38
  CLUS_2               34                154
  CLUS_3               35                153

Clustering(30) Variable = 17P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P GAIN MUTATED        2      1      1      1
  17P GAIN WILD-TYPE      3      8     11      5
D30V1, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                1                  8
  CLUS_3                1                 11
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        2      1      2
  17P GAIN WILD-TYPE      5     12     10
D30V2, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                1                 12
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       28     25     30
  17P GAIN WILD-TYPE    158    191     61
D30V3, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               28                158
  CLUS_2               25                191
  CLUS_3               30                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       31     19     20
  17P GAIN WILD-TYPE    110    121    130
D30V4, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               31                110
  CLUS_2               19                121
  CLUS_3               20                130
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       13      9     12
  17P GAIN WILD-TYPE     81     59     61
D30V5, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               13                 81
  CLUS_2                9                 59
  CLUS_3               12                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       12      8     14
  17P GAIN WILD-TYPE     94     62     45
D30V6, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               12                 94
  CLUS_2                8                 62
  CLUS_3               14                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P GAIN MUTATED       27      9     10     27      9
  17P GAIN WILD-TYPE    111    103     66     79     45
D30V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       21     23     38
  17P GAIN WILD-TYPE     98    188    118
D30V8, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               21                 98
  CLUS_2               23                188
  CLUS_3               38                118
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       16     58      7
  17P GAIN WILD-TYPE    163    173     71
D30V9, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               16                163
  CLUS_2               58                173
  CLUS_3                7                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        7     56     18
  17P GAIN WILD-TYPE     44    193    170
D30V10, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                7                 44
  CLUS_2               56                193
  CLUS_3               18                170
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED       19     36     14
  17P GAIN WILD-TYPE    136    156     64
D30V11, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1               19                136
  CLUS_2               36                156
  CLUS_3               14                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P GAIN MUTATED        8     39     22
  17P GAIN WILD-TYPE     41    149    166
D30V12, multiclass
        clus
vv       17P GAIN MUTATED 17P GAIN WILD-TYPE
  CLUS_1                8                 41
  CLUS_2               39                149
  CLUS_3               22                166

Clustering(31) Variable = 17Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q GAIN MUTATED        3      3      2      1
  17Q GAIN WILD-TYPE      2      6     10      5
D31V1, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                3                  2
  CLUS_2                3                  6
  CLUS_3                2                 10
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED        2      2      5
  17Q GAIN WILD-TYPE      5     11      7
D31V2, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                2                 11
  CLUS_3                5                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       91     50     45
  17Q GAIN WILD-TYPE     95    166     46
D31V3, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               91                 95
  CLUS_2               50                166
  CLUS_3               45                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       52     69     42
  17Q GAIN WILD-TYPE     89     71    108
D31V4, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               52                 89
  CLUS_2               69                 71
  CLUS_3               42                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       36     22     29
  17Q GAIN WILD-TYPE     58     46     44
D31V5, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               36                 58
  CLUS_2               22                 46
  CLUS_3               29                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       41     20     26
  17Q GAIN WILD-TYPE     65     50     33
D31V6, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               41                 65
  CLUS_2               20                 50
  CLUS_3               26                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q GAIN MUTATED       72     28     20     44     18
  17Q GAIN WILD-TYPE     66     84     56     62     36
D31V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       62     55     65
  17Q GAIN WILD-TYPE     57    156     91
D31V8, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               62                 57
  CLUS_2               55                156
  CLUS_3               65                 91
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       46    112     26
  17Q GAIN WILD-TYPE    133    119     52
D31V9, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               46                133
  CLUS_2              112                119
  CLUS_3               26                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       16    115     53
  17Q GAIN WILD-TYPE     35    134    135
D31V10, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               16                 35
  CLUS_2              115                134
  CLUS_3               53                135
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       48     83     31
  17Q GAIN WILD-TYPE    107    109     47
D31V11, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               48                107
  CLUS_2               83                109
  CLUS_3               31                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q GAIN MUTATED       18     90     54
  17Q GAIN WILD-TYPE     31     98    134
D31V12, multiclass
        clus
vv       17Q GAIN MUTATED 17Q GAIN WILD-TYPE
  CLUS_1               18                 31
  CLUS_2               90                 98
  CLUS_3               54                134

Clustering(32) Variable = 18P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P GAIN MUTATED        1      3      2      1
  18P GAIN WILD-TYPE      4      6     10      5
D32V1, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                  6
  CLUS_3                2                 10
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        2      2      3
  18P GAIN WILD-TYPE      5     11      9
D32V2, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                2                 11
  CLUS_3                3                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       47     21     23
  18P GAIN WILD-TYPE    139    195     68
D32V3, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               47                139
  CLUS_2               21                195
  CLUS_3               23                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       40     27     12
  18P GAIN WILD-TYPE    101    113    138
D32V4, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               40                101
  CLUS_2               27                113
  CLUS_3               12                138
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       12     15     14
  18P GAIN WILD-TYPE     82     53     59
D32V5, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               12                 82
  CLUS_2               15                 53
  CLUS_3               14                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       16     14     11
  18P GAIN WILD-TYPE     90     56     48
D32V6, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               16                 90
  CLUS_2               14                 56
  CLUS_3               11                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P GAIN MUTATED       26     12     12     30     10
  18P GAIN WILD-TYPE    112    100     64     76     44
D32V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       22     27     41
  18P GAIN WILD-TYPE     97    184    115
D32V8, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               22                 97
  CLUS_2               27                184
  CLUS_3               41                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       22     54     14
  18P GAIN WILD-TYPE    157    177     64
D32V9, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               22                157
  CLUS_2               54                177
  CLUS_3               14                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        6     62     22
  18P GAIN WILD-TYPE     45    187    166
D32V10, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                6                 45
  CLUS_2               62                187
  CLUS_3               22                166
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED       18     48     13
  18P GAIN WILD-TYPE    137    144     65
D32V11, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1               18                137
  CLUS_2               48                144
  CLUS_3               13                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P GAIN MUTATED        7     53     19
  18P GAIN WILD-TYPE     42    135    169
D32V12, multiclass
        clus
vv       18P GAIN MUTATED 18P GAIN WILD-TYPE
  CLUS_1                7                 42
  CLUS_2               53                135
  CLUS_3               19                169

Clustering(33) Variable = 18Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q GAIN MUTATED        1      2      1      2
  18Q GAIN WILD-TYPE      4      7     11      4
D33V1, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                2                  7
  CLUS_3                1                 11
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        3      1      2
  18Q GAIN WILD-TYPE      4     12     10
D33V2, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                1                 12
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       29     15     22
  18Q GAIN WILD-TYPE    157    201     69
D33V3, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               29                157
  CLUS_2               15                201
  CLUS_3               22                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       34     16      6
  18Q GAIN WILD-TYPE    107    124    144
D33V4, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               34                107
  CLUS_2               16                124
  CLUS_3                6                144
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        6     10     15
  18Q GAIN WILD-TYPE     88     58     58
D33V5, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                6                 88
  CLUS_2               10                 58
  CLUS_3               15                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        7     12     12
  18Q GAIN WILD-TYPE     99     58     47
D33V6, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                7                 99
  CLUS_2               12                 58
  CLUS_3               12                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q GAIN MUTATED       14      8      9     30      4
  18Q GAIN WILD-TYPE    124    104     67     76     50
D33V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       13     15     37
  18Q GAIN WILD-TYPE    106    196    119
D33V8, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               13                106
  CLUS_2               15                196
  CLUS_3               37                119
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       15     42      8
  18Q GAIN WILD-TYPE    164    189     70
D33V9, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               15                164
  CLUS_2               42                189
  CLUS_3                8                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        5     47     13
  18Q GAIN WILD-TYPE     46    202    175
D33V10, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 46
  CLUS_2               47                202
  CLUS_3               13                175
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED       10     36     10
  18Q GAIN WILD-TYPE    145    156     68
D33V11, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1               10                145
  CLUS_2               36                156
  CLUS_3               10                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q GAIN MUTATED        5     37     14
  18Q GAIN WILD-TYPE     44    151    174
D33V12, multiclass
        clus
vv       18Q GAIN MUTATED 18Q GAIN WILD-TYPE
  CLUS_1                5                 44
  CLUS_2               37                151
  CLUS_3               14                174

Clustering(34) Variable = 19P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P GAIN MUTATED        1      2      0      0
  19P GAIN WILD-TYPE      4      7     12      6
D34V1, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                2                  7
  CLUS_3                0                 12
  CLUS_4                0                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        0      0      3
  19P GAIN WILD-TYPE      7     13      9
D34V2, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                0                 13
  CLUS_3                3                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       10     12     10
  19P GAIN WILD-TYPE    176    204     81
D34V3, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               10                176
  CLUS_2               12                204
  CLUS_3               10                 81
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED       13     10      7
  19P GAIN WILD-TYPE    128    130    143
D34V4, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1               13                128
  CLUS_2               10                130
  CLUS_3                7                143
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        5      3      3
  19P GAIN WILD-TYPE     89     65     70
D34V5, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                5                 89
  CLUS_2                3                 65
  CLUS_3                3                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        4      4      3
  19P GAIN WILD-TYPE    102     66     56
D34V6, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                4                102
  CLUS_2                4                 66
  CLUS_3                3                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P GAIN MUTATED       10      7      5      6      3
  19P GAIN WILD-TYPE    128    105     71    100     51
D34V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        8     11     12
  19P GAIN WILD-TYPE    111    200    144
D34V8, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                8                111
  CLUS_2               11                200
  CLUS_3               12                144
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        9     16      7
  19P GAIN WILD-TYPE    170    215     71
D34V9, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                9                170
  CLUS_2               16                215
  CLUS_3                7                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        3     19     10
  19P GAIN WILD-TYPE     48    230    178
D34V10, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                3                 48
  CLUS_2               19                230
  CLUS_3               10                178
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        8     19      1
  19P GAIN WILD-TYPE    147    173     77
D34V11, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                8                147
  CLUS_2               19                173
  CLUS_3                1                 77
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P GAIN MUTATED        1     16     11
  19P GAIN WILD-TYPE     48    172    177
D34V12, multiclass
        clus
vv       19P GAIN MUTATED 19P GAIN WILD-TYPE
  CLUS_1                1                 48
  CLUS_2               16                172
  CLUS_3               11                177

Clustering(35) Variable = 19Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q GAIN MUTATED        0      3      0      0
  19Q GAIN WILD-TYPE      5      6     12      6
D35V1, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                  6
  CLUS_3                0                 12
  CLUS_4                0                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        0      0      3
  19Q GAIN WILD-TYPE      7     13      9
D35V2, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                0                  7
  CLUS_2                0                 13
  CLUS_3                3                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       21     26     24
  19Q GAIN WILD-TYPE    165    190     67
D35V3, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               21                165
  CLUS_2               26                190
  CLUS_3               24                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       33     15     18
  19Q GAIN WILD-TYPE    108    125    132
D35V4, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               33                108
  CLUS_2               15                125
  CLUS_3               18                132
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       13      8     10
  19Q GAIN WILD-TYPE     81     60     63
D35V5, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                 81
  CLUS_2                8                 60
  CLUS_3               10                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       12     10      9
  19Q GAIN WILD-TYPE     94     60     50
D35V6, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               12                 94
  CLUS_2               10                 60
  CLUS_3                9                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q GAIN MUTATED       16     12     16     19      6
  19Q GAIN WILD-TYPE    122    100     60     87     48
D35V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       13     23     33
  19Q GAIN WILD-TYPE    106    188    123
D35V8, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               13                106
  CLUS_2               23                188
  CLUS_3               33                123
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       21     37     13
  19Q GAIN WILD-TYPE    158    194     65
D35V9, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               21                158
  CLUS_2               37                194
  CLUS_3               13                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        3     45     23
  19Q GAIN WILD-TYPE     48    204    165
D35V10, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                3                 48
  CLUS_2               45                204
  CLUS_3               23                165
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED       18     38      9
  19Q GAIN WILD-TYPE    137    154     69
D35V11, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1               18                137
  CLUS_2               38                154
  CLUS_3                9                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q GAIN MUTATED        5     38     22
  19Q GAIN WILD-TYPE     44    150    166
D35V12, multiclass
        clus
vv       19Q GAIN MUTATED 19Q GAIN WILD-TYPE
  CLUS_1                5                 44
  CLUS_2               38                150
  CLUS_3               22                166

Clustering(36) Variable = 20P GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P GAIN MUTATED        0      3      2      4
  20P GAIN WILD-TYPE      5      6     10      2
D36V1, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                  6
  CLUS_3                2                 10
  CLUS_4                4                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED        4      2      3
  20P GAIN WILD-TYPE      3     11      9
D36V2, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1                4                  3
  CLUS_2                2                 11
  CLUS_3                3                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       62     55     47
  20P GAIN WILD-TYPE    124    161     44
D36V3, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               62                124
  CLUS_2               55                161
  CLUS_3               47                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       61     41     40
  20P GAIN WILD-TYPE     80     99    110
D36V4, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               61                 80
  CLUS_2               41                 99
  CLUS_3               40                110
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       32     21     30
  20P GAIN WILD-TYPE     62     47     43
D36V5, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               32                 62
  CLUS_2               21                 47
  CLUS_3               30                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       35     22     26
  20P GAIN WILD-TYPE     71     48     33
D36V6, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               35                 71
  CLUS_2               22                 48
  CLUS_3               26                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P GAIN MUTATED       45     27     24     53     11
  20P GAIN WILD-TYPE     93     85     52     53     43
D36V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       43     46     71
  20P GAIN WILD-TYPE     76    165     85
D36V8, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               43                 76
  CLUS_2               46                165
  CLUS_3               71                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       37     92     33
  20P GAIN WILD-TYPE    142    139     45
D36V9, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               37                142
  CLUS_2               92                139
  CLUS_3               33                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       21    103     38
  20P GAIN WILD-TYPE     30    146    150
D36V10, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               21                 30
  CLUS_2              103                146
  CLUS_3               38                150
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       33     75     34
  20P GAIN WILD-TYPE    122    117     44
D36V11, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               33                122
  CLUS_2               75                117
  CLUS_3               34                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P GAIN MUTATED       21     80     41
  20P GAIN WILD-TYPE     28    108    147
D36V12, multiclass
        clus
vv       20P GAIN MUTATED 20P GAIN WILD-TYPE
  CLUS_1               21                 28
  CLUS_2               80                108
  CLUS_3               41                147

Clustering(37) Variable = 20Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q GAIN MUTATED        0      2      2      5
  20Q GAIN WILD-TYPE      5      7     10      1
D37V1, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                  7
  CLUS_3                2                 10
  CLUS_4                5                  1
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED        5      2      2
  20Q GAIN WILD-TYPE      2     11     10
D37V2, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1                5                  2
  CLUS_2                2                 11
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       80     56     53
  20Q GAIN WILD-TYPE    106    160     38
D37V3, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               80                106
  CLUS_2               56                160
  CLUS_3               53                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       69     54     42
  20Q GAIN WILD-TYPE     72     86    108
D37V4, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               69                 72
  CLUS_2               54                 86
  CLUS_3               42                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       40     23     35
  20Q GAIN WILD-TYPE     54     45     38
D37V5, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               40                 54
  CLUS_2               23                 45
  CLUS_3               35                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       46     21     31
  20Q GAIN WILD-TYPE     60     49     28
D37V6, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               46                 60
  CLUS_2               21                 49
  CLUS_3               31                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q GAIN MUTATED       59     24     27     59     16
  20Q GAIN WILD-TYPE     79     88     49     47     38
D37V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       54     52     79
  20Q GAIN WILD-TYPE     65    159     77
D37V8, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               54                 65
  CLUS_2               52                159
  CLUS_3               79                 77
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       42    109     34
  20Q GAIN WILD-TYPE    137    122     44
D37V9, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               42                137
  CLUS_2              109                122
  CLUS_3               34                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       23    118     44
  20Q GAIN WILD-TYPE     28    131    144
D37V10, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               23                 28
  CLUS_2              118                131
  CLUS_3               44                144
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       38     92     35
  20Q GAIN WILD-TYPE    117    100     43
D37V11, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               38                117
  CLUS_2               92                100
  CLUS_3               35                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q GAIN MUTATED       22     93     50
  20Q GAIN WILD-TYPE     27     95    138
D37V12, multiclass
        clus
vv       20Q GAIN MUTATED 20Q GAIN WILD-TYPE
  CLUS_1               22                 27
  CLUS_2               93                 95
  CLUS_3               50                138

Clustering(38) Variable = 21Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q GAIN MUTATED        2      1      2      2
  21Q GAIN WILD-TYPE      3      8     10      4
D38V1, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                1                  8
  CLUS_3                2                 10
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        3      2      2
  21Q GAIN WILD-TYPE      4     11     10
D38V2, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                2                 11
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       54     31      9
  21Q GAIN WILD-TYPE    132    185     82
D38V3, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               54                132
  CLUS_2               31                185
  CLUS_3                9                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       26     27     28
  21Q GAIN WILD-TYPE    115    113    122
D38V4, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               26                115
  CLUS_2               27                113
  CLUS_3               28                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       22     10     12
  21Q GAIN WILD-TYPE     72     58     61
D38V5, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               22                 72
  CLUS_2               10                 58
  CLUS_3               12                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       27      9      8
  21Q GAIN WILD-TYPE     79     61     51
D38V6, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               27                 79
  CLUS_2                9                 61
  CLUS_3                8                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q GAIN MUTATED       34     28     11     14      6
  21Q GAIN WILD-TYPE    104     84     65     92     48
D38V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       29     41     23
  21Q GAIN WILD-TYPE     90    170    133
D38V8, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               29                 90
  CLUS_2               41                170
  CLUS_3               23                133
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       28     49     16
  21Q GAIN WILD-TYPE    151    182     62
D38V9, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               28                151
  CLUS_2               49                182
  CLUS_3               16                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       12     47     34
  21Q GAIN WILD-TYPE     39    202    154
D38V10, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               12                 39
  CLUS_2               47                202
  CLUS_3               34                154
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED       32     37     12
  21Q GAIN WILD-TYPE    123    155     66
D38V11, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1               32                123
  CLUS_2               37                155
  CLUS_3               12                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q GAIN MUTATED        8     39     34
  21Q GAIN WILD-TYPE     41    149    154
D38V12, multiclass
        clus
vv       21Q GAIN MUTATED 21Q GAIN WILD-TYPE
  CLUS_1                8                 41
  CLUS_2               39                149
  CLUS_3               34                154

Clustering(39) Variable = 22Q GAIN MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q GAIN MUTATED        0      1      1      3
  22Q GAIN WILD-TYPE      5      8     11      3
D39V1, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                1                  8
  CLUS_3                1                 11
  CLUS_4                3                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        3      1      1
  22Q GAIN WILD-TYPE      4     12     11
D39V2, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                1                 12
  CLUS_3                1                 11
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       35     17      9
  22Q GAIN WILD-TYPE    151    199     82
D39V3, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               35                151
  CLUS_2               17                199
  CLUS_3                9                 82
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       17     15     20
  22Q GAIN WILD-TYPE    124    125    130
D39V4, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               17                124
  CLUS_2               15                125
  CLUS_3               20                130
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       14      5     12
  22Q GAIN WILD-TYPE     80     63     61
D39V5, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               14                 80
  CLUS_2                5                 63
  CLUS_3               12                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       17      5      9
  22Q GAIN WILD-TYPE     89     65     50
D39V6, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               17                 89
  CLUS_2                5                 65
  CLUS_3                9                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q GAIN MUTATED       14     12     13     10     11
  22Q GAIN WILD-TYPE    124    100     63     96     43
D39V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       16     18     26
  22Q GAIN WILD-TYPE    103    193    130
D39V8, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               16                103
  CLUS_2               18                193
  CLUS_3               26                130
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       19     31     11
  22Q GAIN WILD-TYPE    160    200     67
D39V9, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               19                160
  CLUS_2               31                200
  CLUS_3               11                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        7     33     21
  22Q GAIN WILD-TYPE     44    216    167
D39V10, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                7                 44
  CLUS_2               33                216
  CLUS_3               21                167
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED       15     26     11
  22Q GAIN WILD-TYPE    140    166     67
D39V11, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1               15                140
  CLUS_2               26                166
  CLUS_3               11                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q GAIN MUTATED        5     27     20
  22Q GAIN WILD-TYPE     44    161    168
D39V12, multiclass
        clus
vv       22Q GAIN MUTATED 22Q GAIN WILD-TYPE
  CLUS_1                5                 44
  CLUS_2               27                161
  CLUS_3               20                168

Clustering(40) Variable = XQ GAIN MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ GAIN MUTATED        1      1      3      0
  XQ GAIN WILD-TYPE      4      8      9      6
D40V1, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               1                 8
  CLUS_3               3                 9
  CLUS_4               0                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        0      3      2
  XQ GAIN WILD-TYPE      7     10     10
D40V2, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               3                10
  CLUS_3               2                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       37     16     15
  XQ GAIN WILD-TYPE    149    200     76
D40V3, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              37               149
  CLUS_2              16               200
  CLUS_3              15                76
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       23     20     15
  XQ GAIN WILD-TYPE    118    120    135
D40V4, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              23               118
  CLUS_2              20               120
  CLUS_3              15               135
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       19     11      8
  XQ GAIN WILD-TYPE     75     57     65
D40V5, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              19                75
  CLUS_2              11                57
  CLUS_3               8                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       23      9      6
  XQ GAIN WILD-TYPE     83     61     53
D40V6, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              23                83
  CLUS_2               9                61
  CLUS_3               6                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ GAIN MUTATED       27     14      4     18      5
  XQ GAIN WILD-TYPE    111     98     72     88     49
D40V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       21     25     22
  XQ GAIN WILD-TYPE     98    186    134
D40V8, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              21                98
  CLUS_2              25               186
  CLUS_3              22               134
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       19     32     16
  XQ GAIN WILD-TYPE    160    199     62
D40V9, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              19               160
  CLUS_2              32               199
  CLUS_3              16                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       10     35     22
  XQ GAIN WILD-TYPE     41    214    166
D40V10, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              10                41
  CLUS_2              35               214
  CLUS_3              22               166
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED       16     29     14
  XQ GAIN WILD-TYPE    139    163     64
D40V11, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1              16               139
  CLUS_2              29               163
  CLUS_3              14                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ GAIN MUTATED        7     30     22
  XQ GAIN WILD-TYPE     42    158    166
D40V12, multiclass
        clus
vv       XQ GAIN MUTATED XQ GAIN WILD-TYPE
  CLUS_1               7                42
  CLUS_2              30               158
  CLUS_3              22               166

Clustering(41) Variable = 1P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1P LOSS MUTATED        0      3      0      1
  1P LOSS WILD-TYPE      5      6     12      5
D41V1, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               3                 6
  CLUS_3               0                12
  CLUS_4               1                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        1      0      3
  1P LOSS WILD-TYPE      6     13      9
D41V2, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               0                13
  CLUS_3               3                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       17     33     29
  1P LOSS WILD-TYPE    169    183     62
D41V3, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              17               169
  CLUS_2              33               183
  CLUS_3              29                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       34     22     10
  1P LOSS WILD-TYPE    107    118    140
D41V4, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              34               107
  CLUS_2              22               118
  CLUS_3              10               140
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       17     11     14
  1P LOSS WILD-TYPE     77     57     59
D41V5, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              17                77
  CLUS_2              11                57
  CLUS_3              14                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       13     15     14
  1P LOSS WILD-TYPE     93     55     45
D41V6, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              13                93
  CLUS_2              15                55
  CLUS_3              14                45
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1P LOSS MUTATED       19     10     14     30      2
  1P LOSS WILD-TYPE    119    102     62     76     52
D41V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       18     20     37
  1P LOSS WILD-TYPE    101    191    119
D41V8, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              18               101
  CLUS_2              20               191
  CLUS_3              37               119
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       26     41     10
  1P LOSS WILD-TYPE    153    190     68
D41V9, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              26               153
  CLUS_2              41               190
  CLUS_3              10                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        7     49     21
  1P LOSS WILD-TYPE     44    200    167
D41V10, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                44
  CLUS_2              49               200
  CLUS_3              21               167
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED       20     34     11
  1P LOSS WILD-TYPE    135    158     67
D41V11, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1              20               135
  CLUS_2              34               158
  CLUS_3              11                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1P LOSS MUTATED        7     35     23
  1P LOSS WILD-TYPE     42    153    165
D41V12, multiclass
        clus
vv       1P LOSS MUTATED 1P LOSS WILD-TYPE
  CLUS_1               7                42
  CLUS_2              35               153
  CLUS_3              23               165

Clustering(42) Variable = 1Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  1Q LOSS MUTATED        0      0      0      0
  1Q LOSS WILD-TYPE      5      9     12      6
D42V1, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        0      0      0
  1Q LOSS WILD-TYPE      7     13     12
D42V2, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        9     10      9
  1Q LOSS WILD-TYPE    177    206     82
D42V3, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               9               177
  CLUS_2              10               206
  CLUS_3               9                82
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED       14      9      2
  1Q LOSS WILD-TYPE    127    131    148
D42V4, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1              14               127
  CLUS_2               9               131
  CLUS_3               2               148
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        7      2      8
  1Q LOSS WILD-TYPE     87     66     65
D42V5, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               7                87
  CLUS_2               2                66
  CLUS_3               8                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        8      3      6
  1Q LOSS WILD-TYPE     98     67     53
D42V6, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               8                98
  CLUS_2               3                67
  CLUS_3               6                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  1Q LOSS MUTATED        9      3      6     10      0
  1Q LOSS WILD-TYPE    129    109     70     96     54
D42V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        9      5     14
  1Q LOSS WILD-TYPE    110    206    142
D42V8, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               9               110
  CLUS_2               5               206
  CLUS_3              14               142
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        8     14      5
  1Q LOSS WILD-TYPE    171    217     73
D42V9, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               8               171
  CLUS_2              14               217
  CLUS_3               5                73
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3     17      7
  1Q LOSS WILD-TYPE     48    232    181
D42V10, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                48
  CLUS_2              17               232
  CLUS_3               7               181
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        6     15      4
  1Q LOSS WILD-TYPE    149    177     74
D42V11, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               6               149
  CLUS_2              15               177
  CLUS_3               4                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  1Q LOSS MUTATED        3     16      6
  1Q LOSS WILD-TYPE     46    172    182
D42V12, multiclass
        clus
vv       1Q LOSS MUTATED 1Q LOSS WILD-TYPE
  CLUS_1               3                46
  CLUS_2              16               172
  CLUS_3               6               182

Clustering(43) Variable = 2P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2P LOSS MUTATED        1      1      1      0
  2P LOSS WILD-TYPE      4      8     11      6
D43V1, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               1                 8
  CLUS_3               1                11
  CLUS_4               0                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        0      1      2
  2P LOSS WILD-TYPE      7     12     10
D43V2, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               1                12
  CLUS_3               2                10
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED       13      6      5
  2P LOSS WILD-TYPE    173    210     86
D43V3, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1              13               173
  CLUS_2               6               210
  CLUS_3               5                86
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        8     10      4
  2P LOSS WILD-TYPE    133    130    146
D43V4, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               8               133
  CLUS_2              10               130
  CLUS_3               4               146
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        5      2      5
  2P LOSS WILD-TYPE     89     66     68
D43V5, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                89
  CLUS_2               2                66
  CLUS_3               5                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        6      3      3
  2P LOSS WILD-TYPE    100     67     56
D43V6, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6               100
  CLUS_2               3                67
  CLUS_3               3                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2P LOSS MUTATED        6      6      4      6      2
  2P LOSS WILD-TYPE    132    106     72    100     52
D43V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        6      9      9
  2P LOSS WILD-TYPE    113    202    147
D43V8, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               6               113
  CLUS_2               9               202
  CLUS_3               9               147
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        7      9      8
  2P LOSS WILD-TYPE    172    222     70
D43V9, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               7               172
  CLUS_2               9               222
  CLUS_3               8                70
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        5     13      6
  2P LOSS WILD-TYPE     46    236    182
D43V10, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               5                46
  CLUS_2              13               236
  CLUS_3               6               182
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        9      5      7
  2P LOSS WILD-TYPE    146    187     71
D43V11, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               9               146
  CLUS_2               5               187
  CLUS_3               7                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2P LOSS MUTATED        4      9      8
  2P LOSS WILD-TYPE     45    179    180
D43V12, multiclass
        clus
vv       2P LOSS MUTATED 2P LOSS WILD-TYPE
  CLUS_1               4                45
  CLUS_2               9               179
  CLUS_3               8               180

Clustering(44) Variable = 2Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  2Q LOSS MUTATED        0      1      1      0
  2Q LOSS WILD-TYPE      5      8     11      6
D44V1, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        0      1      1
  2Q LOSS WILD-TYPE      7     12     11
D44V2, multiclass
[1] "Remove cluster labels:" "2Q LOSS MUTATED"       
clus
  2Q LOSS MUTATED 2Q LOSS WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2657        TCGA-44-2659        TCGA-44-2661        TCGA-44-2662 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-2665        TCGA-44-2666        TCGA-44-2668        TCGA-44-3398 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-44-3918        TCGA-44-3919        TCGA-44-4112        TCGA-55-1592 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-55-1594        TCGA-55-1595        TCGA-55-1596        TCGA-64-1677 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-64-1678        TCGA-64-1680        TCGA-67-3770        TCGA-67-3771 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"2Q LOSS WILD-TYPE" "2Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED       17      4      2
  2Q LOSS WILD-TYPE    169    212     89
D44V3, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1              17               169
  CLUS_2               4               212
  CLUS_3               2                89
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        9     11      1
  2Q LOSS WILD-TYPE    132    129    149
D44V4, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               9               132
  CLUS_2              11               129
  CLUS_3               1               149
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        5      2      6
  2Q LOSS WILD-TYPE     89     66     67
D44V5, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               5                89
  CLUS_2               2                66
  CLUS_3               6                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        6      4      3
  2Q LOSS WILD-TYPE    100     66     56
D44V6, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6               100
  CLUS_2               4                66
  CLUS_3               3                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  2Q LOSS MUTATED        8      5      1      8      1
  2Q LOSS WILD-TYPE    130    107     75     98     53
D44V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        8      8      7
  2Q LOSS WILD-TYPE    111    203    149
D44V8, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               8               111
  CLUS_2               8               203
  CLUS_3               7               149
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        6     11      6
  2Q LOSS WILD-TYPE    173    220     72
D44V9, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               6               173
  CLUS_2              11               220
  CLUS_3               6                72
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        4     14      5
  2Q LOSS WILD-TYPE     47    235    183
D44V10, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                47
  CLUS_2              14               235
  CLUS_3               5               183
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        7      8      6
  2Q LOSS WILD-TYPE    148    184     72
D44V11, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               7               148
  CLUS_2               8               184
  CLUS_3               6                72
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  2Q LOSS MUTATED        4     11      6
  2Q LOSS WILD-TYPE     45    177    182
D44V12, multiclass
        clus
vv       2Q LOSS MUTATED 2Q LOSS WILD-TYPE
  CLUS_1               4                45
  CLUS_2              11               177
  CLUS_3               6               182

Clustering(45) Variable = 3P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3P LOSS MUTATED        1      4      3      4
  3P LOSS WILD-TYPE      4      5      9      2
D45V1, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               4                 5
  CLUS_3               3                 9
  CLUS_4               4                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED        5      3      4
  3P LOSS WILD-TYPE      2     10      8
D45V2, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1               5                 2
  CLUS_2               3                10
  CLUS_3               4                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       83     68     54
  3P LOSS WILD-TYPE    103    148     37
D45V3, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              83               103
  CLUS_2              68               148
  CLUS_3              54                37
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       82     48     48
  3P LOSS WILD-TYPE     59     92    102
D45V4, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              82                59
  CLUS_2              48                92
  CLUS_3              48               102
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       37     29     38
  3P LOSS WILD-TYPE     57     39     35
D45V5, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              37                57
  CLUS_2              29                39
  CLUS_3              38                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       45     28     31
  3P LOSS WILD-TYPE     61     42     28
D45V6, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              45                61
  CLUS_2              28                42
  CLUS_3              31                28
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3P LOSS MUTATED       48     43     32     58     22
  3P LOSS WILD-TYPE     90     69     44     48     32
D45V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       44     69     90
  3P LOSS WILD-TYPE     75    142     66
D45V8, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              44                75
  CLUS_2              69               142
  CLUS_3              90                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       60    104     38
  3P LOSS WILD-TYPE    119    127     40
D45V9, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              60               119
  CLUS_2             104               127
  CLUS_3              38                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       20    111     71
  3P LOSS WILD-TYPE     31    138    117
D45V10, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              20                31
  CLUS_2             111               138
  CLUS_3              71               117
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       55     89     32
  3P LOSS WILD-TYPE    100    103     46
D45V11, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              55               100
  CLUS_2              89               103
  CLUS_3              32                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3P LOSS MUTATED       20     88     68
  3P LOSS WILD-TYPE     29    100    120
D45V12, multiclass
        clus
vv       3P LOSS MUTATED 3P LOSS WILD-TYPE
  CLUS_1              20                29
  CLUS_2              88               100
  CLUS_3              68               120

Clustering(46) Variable = 3Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  3Q LOSS MUTATED        1      3      2      3
  3Q LOSS WILD-TYPE      4      6     10      3
D46V1, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               3                 6
  CLUS_3               2                10
  CLUS_4               3                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED        4      2      3
  3Q LOSS WILD-TYPE      3     11      9
D46V2, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1               4                 3
  CLUS_2               2                11
  CLUS_3               3                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       58     48     34
  3Q LOSS WILD-TYPE    128    168     57
D46V3, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              58               128
  CLUS_2              48               168
  CLUS_3              34                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       54     41     27
  3Q LOSS WILD-TYPE     87     99    123
D46V4, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              54                87
  CLUS_2              41                99
  CLUS_3              27               123
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       26     21     21
  3Q LOSS WILD-TYPE     68     47     52
D46V5, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              26                68
  CLUS_2              21                47
  CLUS_3              21                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       29     22     17
  3Q LOSS WILD-TYPE     77     48     42
D46V6, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              29                77
  CLUS_2              22                48
  CLUS_3              17                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  3Q LOSS MUTATED       30     37     18     39     14
  3Q LOSS WILD-TYPE    108     75     58     67     40
D46V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       32     53     53
  3Q LOSS WILD-TYPE     87    158    103
D46V8, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              32                87
  CLUS_2              53               158
  CLUS_3              53               103
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       48     65     25
  3Q LOSS WILD-TYPE    131    166     53
D46V9, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              48               131
  CLUS_2              65               166
  CLUS_3              25                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       13     71     54
  3Q LOSS WILD-TYPE     38    178    134
D46V10, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13                38
  CLUS_2              71               178
  CLUS_3              54               134
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       45     56     20
  3Q LOSS WILD-TYPE    110    136     58
D46V11, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              45               110
  CLUS_2              56               136
  CLUS_3              20                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  3Q LOSS MUTATED       13     58     50
  3Q LOSS WILD-TYPE     36    130    138
D46V12, multiclass
        clus
vv       3Q LOSS MUTATED 3Q LOSS WILD-TYPE
  CLUS_1              13                36
  CLUS_2              58               130
  CLUS_3              50               138

Clustering(47) Variable = 4P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4P LOSS MUTATED        2      2      1      3
  4P LOSS WILD-TYPE      3      7     11      3
D47V1, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               2                 3
  CLUS_2               2                 7
  CLUS_3               1                11
  CLUS_4               3                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        3      1      4
  4P LOSS WILD-TYPE      4     12      8
D47V2, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               3                 4
  CLUS_2               1                12
  CLUS_3               4                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       50     32     34
  4P LOSS WILD-TYPE    136    184     57
D47V3, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              50               136
  CLUS_2              32               184
  CLUS_3              34                57
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       39     28     30
  4P LOSS WILD-TYPE    102    112    120
D47V4, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              39               102
  CLUS_2              28               112
  CLUS_3              30               120
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       26     14     25
  4P LOSS WILD-TYPE     68     54     48
D47V5, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              26                68
  CLUS_2              14                54
  CLUS_3              25                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       32     14     19
  4P LOSS WILD-TYPE     74     56     40
D47V6, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              32                74
  CLUS_2              14                56
  CLUS_3              19                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4P LOSS MUTATED       30     12     22     40     11
  4P LOSS WILD-TYPE    108    100     54     66     43
D47V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       23     30     62
  4P LOSS WILD-TYPE     96    181     94
D47V8, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              23                96
  CLUS_2              30               181
  CLUS_3              62                94
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       23     76     16
  4P LOSS WILD-TYPE    156    155     62
D47V9, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              23               156
  CLUS_2              76               155
  CLUS_3              16                62
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        6     82     27
  4P LOSS WILD-TYPE     45    167    161
D47V10, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               6                45
  CLUS_2              82               167
  CLUS_3              27               161
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED       23     56     17
  4P LOSS WILD-TYPE    132    136     61
D47V11, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1              23               132
  CLUS_2              56               136
  CLUS_3              17                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4P LOSS MUTATED        5     59     32
  4P LOSS WILD-TYPE     44    129    156
D47V12, multiclass
        clus
vv       4P LOSS MUTATED 4P LOSS WILD-TYPE
  CLUS_1               5                44
  CLUS_2              59               129
  CLUS_3              32               156

Clustering(48) Variable = 4Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  4Q LOSS MUTATED        2      1      0      5
  4Q LOSS WILD-TYPE      3      8     12      1
D48V1, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               2                 3
  CLUS_2               1                 8
  CLUS_3               0                12
  CLUS_4               5                 1
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED        5      0      3
  4Q LOSS WILD-TYPE      2     13      9
D48V2, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1               5                 2
  CLUS_2               0                13
  CLUS_3               3                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       56     36     40
  4Q LOSS WILD-TYPE    130    180     51
D48V3, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              56               130
  CLUS_2              36               180
  CLUS_3              40                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       51     29     31
  4Q LOSS WILD-TYPE     90    111    119
D48V4, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              51                90
  CLUS_2              29               111
  CLUS_3              31               119
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       30     16     26
  4Q LOSS WILD-TYPE     64     52     47
D48V5, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              30                64
  CLUS_2              16                52
  CLUS_3              26                47
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       35     14     23
  4Q LOSS WILD-TYPE     71     56     36
D48V6, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              35                71
  CLUS_2              14                56
  CLUS_3              23                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  4Q LOSS MUTATED       33     12     25     49     11
  4Q LOSS WILD-TYPE    105    100     51     57     43
D48V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       24     30     76
  4Q LOSS WILD-TYPE     95    181     80
D48V8, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              24                95
  CLUS_2              30               181
  CLUS_3              76                80
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       26     85     20
  4Q LOSS WILD-TYPE    153    146     58
D48V9, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              26               153
  CLUS_2              85               146
  CLUS_3              20                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       11     93     27
  4Q LOSS WILD-TYPE     40    156    161
D48V10, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              11                40
  CLUS_2              93               156
  CLUS_3              27               161
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       26     68     17
  4Q LOSS WILD-TYPE    129    124     61
D48V11, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              26               129
  CLUS_2              68               124
  CLUS_3              17                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  4Q LOSS MUTATED       11     67     33
  4Q LOSS WILD-TYPE     38    121    155
D48V12, multiclass
        clus
vv       4Q LOSS MUTATED 4Q LOSS WILD-TYPE
  CLUS_1              11                38
  CLUS_2              67               121
  CLUS_3              33               155

Clustering(49) Variable = 5P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5P LOSS MUTATED        1      2      1      2
  5P LOSS WILD-TYPE      4      7     11      4
D49V1, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               2                 7
  CLUS_3               1                11
  CLUS_4               2                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        2      1      3
  5P LOSS WILD-TYPE      5     12      9
D49V2, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               2                 5
  CLUS_2               1                12
  CLUS_3               3                 9
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       17     15      8
  5P LOSS WILD-TYPE    169    201     83
D49V3, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              17               169
  CLUS_2              15               201
  CLUS_3               8                83
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED       14     13      4
  5P LOSS WILD-TYPE    127    127    146
D49V4, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1              14               127
  CLUS_2              13               127
  CLUS_3               4               146
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        6      5      9
  5P LOSS WILD-TYPE     88     63     64
D49V5, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               6                88
  CLUS_2               5                63
  CLUS_3               9                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        8      4      8
  5P LOSS WILD-TYPE     98     66     51
D49V6, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               8                98
  CLUS_2               4                66
  CLUS_3               8                51
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5P LOSS MUTATED       12      5      9     13      0
  5P LOSS WILD-TYPE    126    107     67     93     54
D49V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        8      6     25
  5P LOSS WILD-TYPE    111    205    131
D49V8, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               8               111
  CLUS_2               6               205
  CLUS_3              25               131
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        8     24      7
  5P LOSS WILD-TYPE    171    207     71
D49V9, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               8               171
  CLUS_2              24               207
  CLUS_3               7                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        3     27      9
  5P LOSS WILD-TYPE     48    222    179
D49V10, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               3                48
  CLUS_2              27               222
  CLUS_3               9               179
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        5     21      4
  5P LOSS WILD-TYPE    150    171     74
D49V11, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               5               150
  CLUS_2              21               171
  CLUS_3               4                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5P LOSS MUTATED        1     23      6
  5P LOSS WILD-TYPE     48    165    182
D49V12, multiclass
        clus
vv       5P LOSS MUTATED 5P LOSS WILD-TYPE
  CLUS_1               1                48
  CLUS_2              23               165
  CLUS_3               6               182

Clustering(50) Variable = 5Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  5Q LOSS MUTATED        1      3      1      4
  5Q LOSS WILD-TYPE      4      6     11      2
D50V1, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               3                 6
  CLUS_3               1                11
  CLUS_4               4                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        4      1      4
  5Q LOSS WILD-TYPE      3     12      8
D50V2, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               4                 3
  CLUS_2               1                12
  CLUS_3               4                 8
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       69     30     38
  5Q LOSS WILD-TYPE    117    186     53
D50V3, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              69               117
  CLUS_2              30               186
  CLUS_3              38                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       49     45     25
  5Q LOSS WILD-TYPE     92     95    125
D50V4, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              49                92
  CLUS_2              45                95
  CLUS_3              25               125
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       34      9     27
  5Q LOSS WILD-TYPE     60     59     46
D50V5, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              34                60
  CLUS_2               9                59
  CLUS_3              27                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       36     11     23
  5Q LOSS WILD-TYPE     70     59     36
D50V6, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              36                70
  CLUS_2              11                59
  CLUS_3              23                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  5Q LOSS MUTATED       47     12     22     44      9
  5Q LOSS WILD-TYPE     91    100     54     62     45
D50V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       37     31     66
  5Q LOSS WILD-TYPE     82    180     90
D50V8, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              37                82
  CLUS_2              31               180
  CLUS_3              66                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       27     88     20
  5Q LOSS WILD-TYPE    152    143     58
D50V9, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              27               152
  CLUS_2              88               143
  CLUS_3              20                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       12     93     30
  5Q LOSS WILD-TYPE     39    156    158
D50V10, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              12                39
  CLUS_2              93               156
  CLUS_3              30               158
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED       25     75     18
  5Q LOSS WILD-TYPE    130    117     60
D50V11, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1              25               130
  CLUS_2              75               117
  CLUS_3              18                60
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  5Q LOSS MUTATED        9     77     32
  5Q LOSS WILD-TYPE     40    111    156
D50V12, multiclass
        clus
vv       5Q LOSS MUTATED 5Q LOSS WILD-TYPE
  CLUS_1               9                40
  CLUS_2              77               111
  CLUS_3              32               156

Clustering(51) Variable = 6P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6P LOSS MUTATED        1      4      0      0
  6P LOSS WILD-TYPE      4      5     12      6
D51V1, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               4                 5
  CLUS_3               0                12
  CLUS_4               0                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED        0      0      5
  6P LOSS WILD-TYPE      7     13      7
D51V2, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1               0                 7
  CLUS_2               0                13
  CLUS_3               5                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       47     34     20
  6P LOSS WILD-TYPE    139    182     71
D51V3, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              47               139
  CLUS_2              34               182
  CLUS_3              20                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       31     33     26
  6P LOSS WILD-TYPE    110    107    124
D51V4, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              31               110
  CLUS_2              33               107
  CLUS_3              26               124
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       21     11     12
  6P LOSS WILD-TYPE     73     57     61
D51V5, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              21                73
  CLUS_2              11                57
  CLUS_3              12                61
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       23     12      9
  6P LOSS WILD-TYPE     83     58     50
D51V6, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              23                83
  CLUS_2              12                58
  CLUS_3               9                50
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6P LOSS MUTATED       34     17     11     26     11
  6P LOSS WILD-TYPE    104     95     65     80     43
D51V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       30     38     31
  6P LOSS WILD-TYPE     89    173    125
D51V8, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              30                89
  CLUS_2              38               173
  CLUS_3              31               125
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       33     48     19
  6P LOSS WILD-TYPE    146    183     59
D51V9, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              33               146
  CLUS_2              48               183
  CLUS_3              19                59
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       15     49     36
  6P LOSS WILD-TYPE     36    200    152
D51V10, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              15                36
  CLUS_2              49               200
  CLUS_3              36               152
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       30     39     20
  6P LOSS WILD-TYPE    125    153     58
D51V11, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              30               125
  CLUS_2              39               153
  CLUS_3              20                58
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6P LOSS MUTATED       12     34     43
  6P LOSS WILD-TYPE     37    154    145
D51V12, multiclass
        clus
vv       6P LOSS MUTATED 6P LOSS WILD-TYPE
  CLUS_1              12                37
  CLUS_2              34               154
  CLUS_3              43               145

Clustering(52) Variable = 6Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  6Q LOSS MUTATED        3      6      3      3
  6Q LOSS WILD-TYPE      2      3      9      3
D52V1, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               3                 2
  CLUS_2               6                 3
  CLUS_3               3                 9
  CLUS_4               3                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED        4      4      7
  6Q LOSS WILD-TYPE      3      9      5
D52V2, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1               4                 3
  CLUS_2               4                 9
  CLUS_3               7                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       86     77     45
  6Q LOSS WILD-TYPE    100    139     46
D52V3, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              86               100
  CLUS_2              77               139
  CLUS_3              45                46
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       65     75     44
  6Q LOSS WILD-TYPE     76     65    106
D52V4, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              65                76
  CLUS_2              75                65
  CLUS_3              44               106
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       38     28     33
  6Q LOSS WILD-TYPE     56     40     40
D52V5, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              38                56
  CLUS_2              28                40
  CLUS_3              33                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       41     33     25
  6Q LOSS WILD-TYPE     65     37     34
D52V6, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              41                65
  CLUS_2              33                37
  CLUS_3              25                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  6Q LOSS MUTATED       68     43     24     49     20
  6Q LOSS WILD-TYPE     70     69     52     57     34
D52V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       60     85     59
  6Q LOSS WILD-TYPE     59    126     97
D52V8, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              60                59
  CLUS_2              85               126
  CLUS_3              59                97
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       74     94     39
  6Q LOSS WILD-TYPE    105    137     39
D52V9, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              74               105
  CLUS_2              94               137
  CLUS_3              39                39
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       30     99     78
  6Q LOSS WILD-TYPE     21    150    110
D52V10, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              30                21
  CLUS_2              99               150
  CLUS_3              78               110
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       63     82     36
  6Q LOSS WILD-TYPE     92    110     42
D52V11, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              63                92
  CLUS_2              82               110
  CLUS_3              36                42
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  6Q LOSS MUTATED       27     72     82
  6Q LOSS WILD-TYPE     22    116    106
D52V12, multiclass
        clus
vv       6Q LOSS MUTATED 6Q LOSS WILD-TYPE
  CLUS_1              27                22
  CLUS_2              72               116
  CLUS_3              82               106

Clustering(53) Variable = 7P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7P LOSS MUTATED        0      1      2      1
  7P LOSS WILD-TYPE      5      8     10      5
D53V1, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               1                 8
  CLUS_3               2                10
  CLUS_4               1                 5
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        1      2      1
  7P LOSS WILD-TYPE      6     11     11
D53V2, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                 6
  CLUS_2               2                11
  CLUS_3               1                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        5     11     17
  7P LOSS WILD-TYPE    181    205     74
D53V3, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               5               181
  CLUS_2              11               205
  CLUS_3              17                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       15      7      5
  7P LOSS WILD-TYPE    126    133    145
D53V4, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              15               126
  CLUS_2               7               133
  CLUS_3               5               145
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        4      7      5
  7P LOSS WILD-TYPE     90     61     68
D53V5, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               4                90
  CLUS_2               7                61
  CLUS_3               5                68
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        6      6      4
  7P LOSS WILD-TYPE    100     64     55
D53V6, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               6               100
  CLUS_2               6                64
  CLUS_3               4                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7P LOSS MUTATED        3      7      6     15      2
  7P LOSS WILD-TYPE    135    105     70     91     52
D53V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        4     11     18
  7P LOSS WILD-TYPE    115    200    138
D53V8, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               4               115
  CLUS_2              11               200
  CLUS_3              18               138
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       13     18      2
  7P LOSS WILD-TYPE    166    213     76
D53V9, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              13               166
  CLUS_2              18               213
  CLUS_3               2                76
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        2     21     10
  7P LOSS WILD-TYPE     49    228    178
D53V10, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               2                49
  CLUS_2              21               228
  CLUS_3              10               178
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED       11     12      4
  7P LOSS WILD-TYPE    144    180     74
D53V11, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1              11               144
  CLUS_2              12               180
  CLUS_3               4                74
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7P LOSS MUTATED        1     16     10
  7P LOSS WILD-TYPE     48    172    178
D53V12, multiclass
        clus
vv       7P LOSS MUTATED 7P LOSS WILD-TYPE
  CLUS_1               1                48
  CLUS_2              16               172
  CLUS_3              10               178

Clustering(54) Variable = 7Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  7Q LOSS MUTATED        1      1      2      2
  7Q LOSS WILD-TYPE      4      8     10      4
D54V1, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               1                 8
  CLUS_3               2                10
  CLUS_4               2                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        3      2      1
  7Q LOSS WILD-TYPE      4     11     11
D54V2, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               3                 4
  CLUS_2               2                11
  CLUS_3               1                11
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       12     12     15
  7Q LOSS WILD-TYPE    174    204     76
D54V3, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              12               174
  CLUS_2              12               204
  CLUS_3              15                76
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       13     11      7
  7Q LOSS WILD-TYPE    128    129    143
D54V4, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              13               128
  CLUS_2              11               129
  CLUS_3               7               143
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        7      4      6
  7Q LOSS WILD-TYPE     87     64     67
D54V5, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               7                87
  CLUS_2               4                64
  CLUS_3               6                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        8      3      6
  7Q LOSS WILD-TYPE     98     67     53
D54V6, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               8                98
  CLUS_2               3                67
  CLUS_3               6                53
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  7Q LOSS MUTATED        6      9      5     15      4
  7Q LOSS WILD-TYPE    132    103     71     91     50
D54V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        8     14     17
  7Q LOSS WILD-TYPE    111    197    139
D54V8, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               8               111
  CLUS_2              14               197
  CLUS_3              17               139
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED       11     23      5
  7Q LOSS WILD-TYPE    168    208     73
D54V9, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1              11               168
  CLUS_2              23               208
  CLUS_3               5                73
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        4     24     11
  7Q LOSS WILD-TYPE     47    225    177
D54V10, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               4                47
  CLUS_2              24               225
  CLUS_3              11               177
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        9     13      9
  7Q LOSS WILD-TYPE    146    179     69
D54V11, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               9               146
  CLUS_2              13               179
  CLUS_3               9                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  7Q LOSS MUTATED        5     15     11
  7Q LOSS WILD-TYPE     44    173    177
D54V12, multiclass
        clus
vv       7Q LOSS MUTATED 7Q LOSS WILD-TYPE
  CLUS_1               5                44
  CLUS_2              15               173
  CLUS_3              11               177

Clustering(55) Variable = 8P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8P LOSS MUTATED        4      6      3      3
  8P LOSS WILD-TYPE      1      3      9      3
D55V1, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                 1
  CLUS_2               6                 3
  CLUS_3               3                 9
  CLUS_4               3                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED        4      3      9
  8P LOSS WILD-TYPE      3     10      3
D55V2, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1               4                 3
  CLUS_2               3                10
  CLUS_3               9                 3
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED      119     45     27
  8P LOSS WILD-TYPE     67    171     64
D55V3, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1             119                67
  CLUS_2              45               171
  CLUS_3              27                64
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       53     61     51
  8P LOSS WILD-TYPE     88     79     99
D55V4, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              53                88
  CLUS_2              61                79
  CLUS_3              51                99
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       42     18     30
  8P LOSS WILD-TYPE     52     50     43
D55V5, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              42                52
  CLUS_2              18                50
  CLUS_3              30                43
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       51     18     21
  8P LOSS WILD-TYPE     55     52     38
D55V6, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              51                55
  CLUS_2              18                52
  CLUS_3              21                38
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8P LOSS MUTATED       76     36     23     41     14
  8P LOSS WILD-TYPE     62     76     53     65     40
D55V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       67     66     57
  8P LOSS WILD-TYPE     52    145     99
D55V8, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              67                52
  CLUS_2              66               145
  CLUS_3              57                99
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       53    107     30
  8P LOSS WILD-TYPE    126    124     48
D55V9, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              53               126
  CLUS_2             107               124
  CLUS_3              30                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       16    111     63
  8P LOSS WILD-TYPE     35    138    125
D55V10, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              16                35
  CLUS_2             111               138
  CLUS_3              63               125
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       45     88     30
  8P LOSS WILD-TYPE    110    104     48
D55V11, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              45               110
  CLUS_2              88               104
  CLUS_3              30                48
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8P LOSS MUTATED       19     89     55
  8P LOSS WILD-TYPE     30     99    133
D55V12, multiclass
        clus
vv       8P LOSS MUTATED 8P LOSS WILD-TYPE
  CLUS_1              19                30
  CLUS_2              89                99
  CLUS_3              55               133

Clustering(56) Variable = 8Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  8Q LOSS MUTATED        0      1      1      0
  8Q LOSS WILD-TYPE      5      8     11      6
D56V1, multiclass
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        0      1      1
  8Q LOSS WILD-TYPE      7     12     11
D56V2, multiclass
[1] "Remove cluster labels:" "8Q LOSS MUTATED"       
clus
  8Q LOSS MUTATED 8Q LOSS WILD-TYPE 
                2                30 
       TCGA-05-4244        TCGA-05-4249        TCGA-05-4250        TCGA-35-3615 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-35-4122        TCGA-35-4123        TCGA-44-2655        TCGA-44-2656 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2659        TCGA-44-2661        TCGA-44-2662        TCGA-44-2665 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-2666        TCGA-44-2668        TCGA-44-3398        TCGA-44-3918 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-44-3919        TCGA-44-4112        TCGA-55-1592        TCGA-55-1594 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-55-1595        TCGA-55-1596        TCGA-64-1677        TCGA-64-1678 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-64-1680        TCGA-67-3770        TCGA-67-3771        TCGA-67-3772 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
       TCGA-67-3773        TCGA-67-3774 
"8Q LOSS WILD-TYPE" "8Q LOSS WILD-TYPE" 
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       34     16      4
  8Q LOSS WILD-TYPE    152    200     87
D56V3, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              34               152
  CLUS_2              16               200
  CLUS_3               4                87
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       12     17     18
  8Q LOSS WILD-TYPE    129    123    132
D56V4, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              12               129
  CLUS_2              17               123
  CLUS_3              18               132
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       15      7      6
  8Q LOSS WILD-TYPE     79     61     67
D56V5, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              15                79
  CLUS_2               7                61
  CLUS_3               6                67
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       15      9      4
  8Q LOSS WILD-TYPE     91     61     55
D56V6, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              15                91
  CLUS_2               9                61
  CLUS_3               4                55
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  8Q LOSS MUTATED       22     14      7      7      4
  8Q LOSS WILD-TYPE    116     98     69     99     50
D56V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       19     22     13
  8Q LOSS WILD-TYPE    100    189    143
D56V8, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              19               100
  CLUS_2              22               189
  CLUS_3              13               143
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       18     22     13
  8Q LOSS WILD-TYPE    161    209     65
D56V9, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              18               161
  CLUS_2              22               209
  CLUS_3              13                65
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        7     26     20
  8Q LOSS WILD-TYPE     44    223    168
D56V10, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               7                44
  CLUS_2              26               223
  CLUS_3              20               168
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED       16     19     12
  8Q LOSS WILD-TYPE    139    173     66
D56V11, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1              16               139
  CLUS_2              19               173
  CLUS_3              12                66
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  8Q LOSS MUTATED        7     19     21
  8Q LOSS WILD-TYPE     42    169    167
D56V12, multiclass
        clus
vv       8Q LOSS MUTATED 8Q LOSS WILD-TYPE
  CLUS_1               7                42
  CLUS_2              19               169
  CLUS_3              21               167

Clustering(57) Variable = 9P LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9P LOSS MUTATED        0      5      7      5
  9P LOSS WILD-TYPE      5      4      5      1
D57V1, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               0                 5
  CLUS_2               5                 4
  CLUS_3               7                 5
  CLUS_4               5                 1
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED        5      7      5
  9P LOSS WILD-TYPE      2      6      7
D57V2, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1               5                 2
  CLUS_2               7                 6
  CLUS_3               5                 7
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED      111     92     51
  9P LOSS WILD-TYPE     75    124     40
D57V3, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1             111                75
  CLUS_2              92               124
  CLUS_3              51                40
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       84     68     68
  9P LOSS WILD-TYPE     57     72     82
D57V4, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              84                57
  CLUS_2              68                72
  CLUS_3              68                82
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       49     30     43
  9P LOSS WILD-TYPE     45     38     30
D57V5, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              49                45
  CLUS_2              30                38
  CLUS_3              43                30
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       53     31     38
  9P LOSS WILD-TYPE     53     39     21
D57V6, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              53                53
  CLUS_2              31                39
  CLUS_3              38                21
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9P LOSS MUTATED       63     54     56     53     25
  9P LOSS WILD-TYPE     75     58     20     53     29
D57V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       53     96    102
  9P LOSS WILD-TYPE     66    115     54
D57V8, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              53                66
  CLUS_2              96               115
  CLUS_3             102                54
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       84    118     49
  9P LOSS WILD-TYPE     95    113     29
D57V9, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              84                95
  CLUS_2             118               113
  CLUS_3              49                29
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       23    141     87
  9P LOSS WILD-TYPE     28    108    101
D57V10, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              23                28
  CLUS_2             141               108
  CLUS_3              87               101
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       77     96     46
  9P LOSS WILD-TYPE     78     96     32
D57V11, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              77                78
  CLUS_2              96                96
  CLUS_3              46                32
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9P LOSS MUTATED       24    108     87
  9P LOSS WILD-TYPE     25     80    101
D57V12, multiclass
        clus
vv       9P LOSS MUTATED 9P LOSS WILD-TYPE
  CLUS_1              24                25
  CLUS_2             108                80
  CLUS_3              87               101

Clustering(58) Variable = 9Q LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  9Q LOSS MUTATED        1      5      7      4
  9Q LOSS WILD-TYPE      4      4      5      2
D58V1, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               5                 4
  CLUS_3               7                 5
  CLUS_4               4                 2
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED        4      7      6
  9Q LOSS WILD-TYPE      3      6      6
D58V2, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1               4                 3
  CLUS_2               7                 6
  CLUS_3               6                 6
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED      101     80     57
  9Q LOSS WILD-TYPE     85    136     34
D58V3, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1             101                85
  CLUS_2              80               136
  CLUS_3              57                34
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       82     59     60
  9Q LOSS WILD-TYPE     59     81     90
D58V4, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              82                59
  CLUS_2              59                81
  CLUS_3              60                90
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       44     27     37
  9Q LOSS WILD-TYPE     50     41     36
D58V5, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              44                50
  CLUS_2              27                41
  CLUS_3              37                36
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       50     24     34
  9Q LOSS WILD-TYPE     56     46     25
D58V6, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              50                56
  CLUS_2              24                46
  CLUS_3              34                25
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  9Q LOSS MUTATED       65     45     43     58     25
  9Q LOSS WILD-TYPE     73     67     33     48     29
D58V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       53     83    100
  9Q LOSS WILD-TYPE     66    128     56
D58V8, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              53                66
  CLUS_2              83               128
  CLUS_3             100                56
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       70    120     45
  9Q LOSS WILD-TYPE    109    111     33
D58V9, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              70               109
  CLUS_2             120               111
  CLUS_3              45                33
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       21    139     75
  9Q LOSS WILD-TYPE     30    110    113
D58V10, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              21                30
  CLUS_2             139               110
  CLUS_3              75               113
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       60     97     43
  9Q LOSS WILD-TYPE     95     95     35
D58V11, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              60                95
  CLUS_2              97                95
  CLUS_3              43                35
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  9Q LOSS MUTATED       22    109     69
  9Q LOSS WILD-TYPE     27     79    119
D58V12, multiclass
        clus
vv       9Q LOSS MUTATED 9Q LOSS WILD-TYPE
  CLUS_1              22                27
  CLUS_2             109                79
  CLUS_3              69               119

Clustering(59) Variable = 10P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10P LOSS MUTATED        2      3      3      1
  10P LOSS WILD-TYPE      3      6      9      5
D59V1, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                3                  6
  CLUS_3                3                  9
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED        1      3      5
  10P LOSS WILD-TYPE      6     10      7
D59V2, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                3                 10
  CLUS_3                5                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       64     27     17
  10P LOSS WILD-TYPE    122    189     74
D59V3, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               64                122
  CLUS_2               27                189
  CLUS_3               17                 74
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       33     33     24
  10P LOSS WILD-TYPE    108    107    126
D59V4, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               33                108
  CLUS_2               33                107
  CLUS_3               24                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       28     11     11
  10P LOSS WILD-TYPE     66     57     62
D59V5, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               28                 66
  CLUS_2               11                 57
  CLUS_3               11                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       32     10      8
  10P LOSS WILD-TYPE     74     60     51
D59V6, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               32                 74
  CLUS_2               10                 60
  CLUS_3                8                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10P LOSS MUTATED       46     18      5     23     15
  10P LOSS WILD-TYPE     92     94     71     83     39
D59V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       37     41     29
  10P LOSS WILD-TYPE     82    170    127
D59V8, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               37                 82
  CLUS_2               41                170
  CLUS_3               29                127
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       28     51     27
  10P LOSS WILD-TYPE    151    180     51
D59V9, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               28                151
  CLUS_2               51                180
  CLUS_3               27                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       17     56     33
  10P LOSS WILD-TYPE     34    193    155
D59V10, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               17                 34
  CLUS_2               56                193
  CLUS_3               33                155
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       22     41     27
  10P LOSS WILD-TYPE    133    151     51
D59V11, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               22                133
  CLUS_2               41                151
  CLUS_3               27                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10P LOSS MUTATED       16     43     31
  10P LOSS WILD-TYPE     33    145    157
D59V12, multiclass
        clus
vv       10P LOSS MUTATED 10P LOSS WILD-TYPE
  CLUS_1               16                 33
  CLUS_2               43                145
  CLUS_3               31                157

Clustering(60) Variable = 10Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  10Q LOSS MUTATED        2      3      3      1
  10Q LOSS WILD-TYPE      3      6      9      5
D60V1, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                3                  6
  CLUS_3                3                  9
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED        1      3      5
  10Q LOSS WILD-TYPE      6     10      7
D60V2, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                3                 10
  CLUS_3                5                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       69     36     23
  10Q LOSS WILD-TYPE    117    180     68
D60V3, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               69                117
  CLUS_2               36                180
  CLUS_3               23                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       44     36     29
  10Q LOSS WILD-TYPE     97    104    121
D60V4, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               44                 97
  CLUS_2               36                104
  CLUS_3               29                121
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       32     12     17
  10Q LOSS WILD-TYPE     62     56     56
D60V5, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               32                 62
  CLUS_2               12                 56
  CLUS_3               17                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       36     10     15
  10Q LOSS WILD-TYPE     70     60     44
D60V6, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               36                 70
  CLUS_2               10                 60
  CLUS_3               15                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  10Q LOSS MUTATED       51     19     12     30     15
  10Q LOSS WILD-TYPE     87     93     64     76     39
D60V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       40     46     41
  10Q LOSS WILD-TYPE     79    165    115
D60V8, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               40                 79
  CLUS_2               46                165
  CLUS_3               41                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       32     67     27
  10Q LOSS WILD-TYPE    147    164     51
D60V9, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               32                147
  CLUS_2               67                164
  CLUS_3               27                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       19     72     35
  10Q LOSS WILD-TYPE     32    177    153
D60V10, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               19                 32
  CLUS_2               72                177
  CLUS_3               35                153
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       25     56     28
  10Q LOSS WILD-TYPE    130    136     50
D60V11, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               25                130
  CLUS_2               56                136
  CLUS_3               28                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  10Q LOSS MUTATED       18     59     32
  10Q LOSS WILD-TYPE     31    129    156
D60V12, multiclass
        clus
vv       10Q LOSS MUTATED 10Q LOSS WILD-TYPE
  CLUS_1               18                 31
  CLUS_2               59                129
  CLUS_3               32                156

Clustering(61) Variable = 11P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11P LOSS MUTATED        1      3      0      1
  11P LOSS WILD-TYPE      4      6     12      5
D61V1, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                3                  6
  CLUS_3                0                 12
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        2      0      3
  11P LOSS WILD-TYPE      5     13      9
D61V2, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                0                 13
  CLUS_3                3                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       53     28     27
  11P LOSS WILD-TYPE    133    188     64
D61V3, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               53                133
  CLUS_2               28                188
  CLUS_3               27                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       38     34     21
  11P LOSS WILD-TYPE    103    106    129
D61V4, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               38                103
  CLUS_2               34                106
  CLUS_3               21                129
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       20     11     25
  11P LOSS WILD-TYPE     74     57     48
D61V5, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               20                 74
  CLUS_2               11                 57
  CLUS_3               25                 48
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       25     13     18
  11P LOSS WILD-TYPE     81     57     41
D61V6, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               25                 81
  CLUS_2               13                 57
  CLUS_3               18                 41
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11P LOSS MUTATED       36     11     21     28      8
  11P LOSS WILD-TYPE    102    101     55     78     46
D61V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       31     25     48
  11P LOSS WILD-TYPE     88    186    108
D61V8, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               31                 88
  CLUS_2               25                186
  CLUS_3               48                108
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       30     63     14
  11P LOSS WILD-TYPE    149    168     64
D61V9, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               30                149
  CLUS_2               63                168
  CLUS_3               14                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        6     67     34
  11P LOSS WILD-TYPE     45    182    154
D61V10, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                 45
  CLUS_2               67                182
  CLUS_3               34                154
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED       27     53     12
  11P LOSS WILD-TYPE    128    139     66
D61V11, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1               27                128
  CLUS_2               53                139
  CLUS_3               12                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11P LOSS MUTATED        6     52     34
  11P LOSS WILD-TYPE     43    136    154
D61V12, multiclass
        clus
vv       11P LOSS MUTATED 11P LOSS WILD-TYPE
  CLUS_1                6                 43
  CLUS_2               52                136
  CLUS_3               34                154

Clustering(62) Variable = 11Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  11Q LOSS MUTATED        1      2      1      1
  11Q LOSS WILD-TYPE      4      7     11      5
D62V1, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                2                  7
  CLUS_3                1                 11
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        2      1      2
  11Q LOSS WILD-TYPE      5     12     10
D62V2, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                1                 12
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       39     26     23
  11Q LOSS WILD-TYPE    147    190     68
D62V3, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               39                147
  CLUS_2               26                190
  CLUS_3               23                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       35     26     17
  11Q LOSS WILD-TYPE    106    114    133
D62V4, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               35                106
  CLUS_2               26                114
  CLUS_3               17                133
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       10      9     22
  11Q LOSS WILD-TYPE     84     59     51
D62V5, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               10                 84
  CLUS_2                9                 59
  CLUS_3               22                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       16     12     13
  11Q LOSS WILD-TYPE     90     58     46
D62V6, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               16                 90
  CLUS_2               12                 58
  CLUS_3               13                 46
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  11Q LOSS MUTATED       24      8     19     27      6
  11Q LOSS WILD-TYPE    114    104     57     79     48
D62V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       21     22     41
  11Q LOSS WILD-TYPE     98    189    115
D62V8, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               21                 98
  CLUS_2               22                189
  CLUS_3               41                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       25     52     11
  11Q LOSS WILD-TYPE    154    179     67
D62V9, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               25                154
  CLUS_2               52                179
  CLUS_3               11                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        5     56     27
  11Q LOSS WILD-TYPE     46    193    161
D62V10, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 46
  CLUS_2               56                193
  CLUS_3               27                161
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED       21     45     10
  11Q LOSS WILD-TYPE    134    147     68
D62V11, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1               21                134
  CLUS_2               45                147
  CLUS_3               10                 68
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  11Q LOSS MUTATED        5     44     27
  11Q LOSS WILD-TYPE     44    144    161
D62V12, multiclass
        clus
vv       11Q LOSS MUTATED 11Q LOSS WILD-TYPE
  CLUS_1                5                 44
  CLUS_2               44                144
  CLUS_3               27                161

Clustering(63) Variable = 12P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12P LOSS MUTATED        0      3      3      2
  12P LOSS WILD-TYPE      5      6      9      4
D63V1, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                  6
  CLUS_3                3                  9
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED        2      4      2
  12P LOSS WILD-TYPE      5      9     10
D63V2, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                4                  9
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       54     39     13
  12P LOSS WILD-TYPE    132    177     78
D63V3, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               54                132
  CLUS_2               39                177
  CLUS_3               13                 78
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       31     36     28
  12P LOSS WILD-TYPE    110    104    122
D63V4, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               31                110
  CLUS_2               36                104
  CLUS_3               28                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       29     19     11
  12P LOSS WILD-TYPE     65     49     62
D63V5, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               29                 65
  CLUS_2               19                 49
  CLUS_3               11                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       32     18      9
  12P LOSS WILD-TYPE     74     52     50
D63V6, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               32                 74
  CLUS_2               18                 52
  CLUS_3                9                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12P LOSS MUTATED       35     33      7     17     13
  12P LOSS WILD-TYPE    103     79     69     89     41
D63V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       31     50     24
  12P LOSS WILD-TYPE     88    161    132
D63V8, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               31                 88
  CLUS_2               50                161
  CLUS_3               24                132
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       38     45     22
  12P LOSS WILD-TYPE    141    186     56
D63V9, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               38                141
  CLUS_2               45                186
  CLUS_3               22                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       12     47     46
  12P LOSS WILD-TYPE     39    202    142
D63V10, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               12                 39
  CLUS_2               47                202
  CLUS_3               46                142
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       38     39     16
  12P LOSS WILD-TYPE    117    153     62
D63V11, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               38                117
  CLUS_2               39                153
  CLUS_3               16                 62
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12P LOSS MUTATED       10     37     46
  12P LOSS WILD-TYPE     39    151    142
D63V12, multiclass
        clus
vv       12P LOSS MUTATED 12P LOSS WILD-TYPE
  CLUS_1               10                 39
  CLUS_2               37                151
  CLUS_3               46                142

Clustering(64) Variable = 12Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  12Q LOSS MUTATED        0      0      2      1
  12Q LOSS WILD-TYPE      5      9     10      5
D64V1, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                0                  9
  CLUS_3                2                 10
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED        1      2      0
  12Q LOSS WILD-TYPE      6     11     12
D64V2, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                2                 11
  CLUS_3                0                 12
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       54     32      7
  12Q LOSS WILD-TYPE    132    184     84
D64V3, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               54                132
  CLUS_2               32                184
  CLUS_3                7                 84
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       26     36     23
  12Q LOSS WILD-TYPE    115    104    127
D64V4, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               26                115
  CLUS_2               36                104
  CLUS_3               23                127
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       24     15      9
  12Q LOSS WILD-TYPE     70     53     64
D64V5, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               24                 70
  CLUS_2               15                 53
  CLUS_3                9                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       28     15      5
  12Q LOSS WILD-TYPE     78     55     54
D64V6, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               28                 78
  CLUS_2               15                 55
  CLUS_3                5                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  12Q LOSS MUTATED       36     26      6     11     13
  12Q LOSS WILD-TYPE    102     86     70     95     41
D64V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       29     45     18
  12Q LOSS WILD-TYPE     90    166    138
D64V8, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               29                 90
  CLUS_2               45                166
  CLUS_3               18                138
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       34     38     20
  12Q LOSS WILD-TYPE    145    193     58
D64V9, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               34                145
  CLUS_2               38                193
  CLUS_3               20                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       11     38     43
  12Q LOSS WILD-TYPE     40    211    145
D64V10, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               11                 40
  CLUS_2               38                211
  CLUS_3               43                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       34     34     17
  12Q LOSS WILD-TYPE    121    158     61
D64V11, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               34                121
  CLUS_2               34                158
  CLUS_3               17                 61
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  12Q LOSS MUTATED       10     32     43
  12Q LOSS WILD-TYPE     39    156    145
D64V12, multiclass
        clus
vv       12Q LOSS MUTATED 12Q LOSS WILD-TYPE
  CLUS_1               10                 39
  CLUS_2               32                156
  CLUS_3               43                145

Clustering(65) Variable = 13Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  13Q LOSS MUTATED        3      4      1      2
  13Q LOSS WILD-TYPE      2      5     11      4
D65V1, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2                4                  5
  CLUS_3                1                 11
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED        3      2      5
  13Q LOSS WILD-TYPE      4     11      7
D65V2, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                2                 11
  CLUS_3                5                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED      122     59     62
  13Q LOSS WILD-TYPE     64    157     29
D65V3, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1              122                 64
  CLUS_2               59                157
  CLUS_3               62                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       72     76     65
  13Q LOSS WILD-TYPE     69     64     85
D65V4, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               72                 69
  CLUS_2               76                 64
  CLUS_3               65                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       54     19     38
  13Q LOSS WILD-TYPE     40     49     35
D65V5, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               54                 40
  CLUS_2               19                 49
  CLUS_3               38                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       64     16     31
  13Q LOSS WILD-TYPE     42     54     28
D65V6, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               64                 42
  CLUS_2               16                 54
  CLUS_3               31                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  13Q LOSS MUTATED       87     40     24     66     24
  13Q LOSS WILD-TYPE     51     72     52     40     30
D65V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       76     79     86
  13Q LOSS WILD-TYPE     43    132     70
D65V8, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               76                 43
  CLUS_2               79                132
  CLUS_3               86                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       73    124     44
  13Q LOSS WILD-TYPE    106    107     34
D65V9, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               73                106
  CLUS_2              124                107
  CLUS_3               44                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       19    139     83
  13Q LOSS WILD-TYPE     32    110    105
D65V10, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               19                 32
  CLUS_2              139                110
  CLUS_3               83                105
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       65    103     44
  13Q LOSS WILD-TYPE     90     89     34
D65V11, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               65                 90
  CLUS_2              103                 89
  CLUS_3               44                 34
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  13Q LOSS MUTATED       26    102     84
  13Q LOSS WILD-TYPE     23     86    104
D65V12, multiclass
        clus
vv       13Q LOSS MUTATED 13Q LOSS WILD-TYPE
  CLUS_1               26                 23
  CLUS_2              102                 86
  CLUS_3               84                104

Clustering(66) Variable = 14Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  14Q LOSS MUTATED        1      2      2      2
  14Q LOSS WILD-TYPE      4      7     10      4
D66V1, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                2                  7
  CLUS_3                2                 10
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        3      2      2
  14Q LOSS WILD-TYPE      4     11     10
D66V2, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                2                 11
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       52     39     20
  14Q LOSS WILD-TYPE    134    177     71
D66V3, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               52                134
  CLUS_2               39                177
  CLUS_3               20                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       36     30     28
  14Q LOSS WILD-TYPE    105    110    122
D66V4, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               36                105
  CLUS_2               30                110
  CLUS_3               28                122
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       22     10     20
  14Q LOSS WILD-TYPE     72     58     53
D66V5, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               22                 72
  CLUS_2               10                 58
  CLUS_3               20                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       26      9     17
  14Q LOSS WILD-TYPE     80     61     42
D66V6, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               26                 80
  CLUS_2                9                 61
  CLUS_3               17                 42
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  14Q LOSS MUTATED       29     22     28     23      8
  14Q LOSS WILD-TYPE    109     90     48     83     46
D66V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       26     34     50
  14Q LOSS WILD-TYPE     93    177    106
D66V8, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               26                 93
  CLUS_2               34                177
  CLUS_3               50                106
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       35     63     13
  14Q LOSS WILD-TYPE    144    168     65
D66V9, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               35                144
  CLUS_2               63                168
  CLUS_3               13                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        6     67     38
  14Q LOSS WILD-TYPE     45    182    150
D66V10, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 45
  CLUS_2               67                182
  CLUS_3               38                150
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED       32     56      7
  14Q LOSS WILD-TYPE    123    136     71
D66V11, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1               32                123
  CLUS_2               56                136
  CLUS_3                7                 71
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  14Q LOSS MUTATED        6     52     37
  14Q LOSS WILD-TYPE     43    136    151
D66V12, multiclass
        clus
vv       14Q LOSS MUTATED 14Q LOSS WILD-TYPE
  CLUS_1                6                 43
  CLUS_2               52                136
  CLUS_3               37                151

Clustering(67) Variable = 15Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  15Q LOSS MUTATED        4      7      4      2
  15Q LOSS WILD-TYPE      1      2      8      4
D67V1, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                4                  1
  CLUS_2                7                  2
  CLUS_3                4                  8
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED        3      5      9
  15Q LOSS WILD-TYPE      4      8      3
D67V2, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                5                  8
  CLUS_3                9                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED      107     73     53
  15Q LOSS WILD-TYPE     79    143     38
D67V3, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1              107                 79
  CLUS_2               73                143
  CLUS_3               53                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       66     78     59
  15Q LOSS WILD-TYPE     75     62     91
D67V4, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               66                 75
  CLUS_2               78                 62
  CLUS_3               59                 91
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       51     26     36
  15Q LOSS WILD-TYPE     43     42     37
D67V5, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               51                 43
  CLUS_2               26                 42
  CLUS_3               36                 37
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       58     26     29
  15Q LOSS WILD-TYPE     48     44     30
D67V6, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               58                 48
  CLUS_2               26                 44
  CLUS_3               29                 30
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  15Q LOSS MUTATED       92     36     13     61     26
  15Q LOSS WILD-TYPE     46     76     63     45     28
D67V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       79     78     71
  15Q LOSS WILD-TYPE     40    133     85
D67V8, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               79                 40
  CLUS_2               78                133
  CLUS_3               71                 85
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       60    126     45
  15Q LOSS WILD-TYPE    119    105     33
D67V9, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               60                119
  CLUS_2              126                105
  CLUS_3               45                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       22    137     72
  15Q LOSS WILD-TYPE     29    112    116
D67V10, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               22                 29
  CLUS_2              137                112
  CLUS_3               72                116
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       59     99     42
  15Q LOSS WILD-TYPE     96     93     36
D67V11, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               59                 96
  CLUS_2               99                 93
  CLUS_3               42                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  15Q LOSS MUTATED       23    105     72
  15Q LOSS WILD-TYPE     26     83    116
D67V12, multiclass
        clus
vv       15Q LOSS MUTATED 15Q LOSS WILD-TYPE
  CLUS_1               23                 26
  CLUS_2              105                 83
  CLUS_3               72                116

Clustering(68) Variable = 16P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16P LOSS MUTATED        0      2      1      2
  16P LOSS WILD-TYPE      5      7     11      4
D68V1, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                2                  7
  CLUS_3                1                 11
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        2      1      2
  16P LOSS WILD-TYPE      5     12     10
D68V2, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                1                 12
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       49     27     32
  16P LOSS WILD-TYPE    137    189     59
D68V3, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               49                137
  CLUS_2               27                189
  CLUS_3               32                 59
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       39     39     18
  16P LOSS WILD-TYPE    102    101    132
D68V4, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               39                102
  CLUS_2               39                101
  CLUS_3               18                132
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       24     11     20
  16P LOSS WILD-TYPE     70     57     53
D68V5, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               24                 70
  CLUS_2               11                 57
  CLUS_3               20                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       27     13     15
  16P LOSS WILD-TYPE     79     57     44
D68V6, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               27                 79
  CLUS_2               13                 57
  CLUS_3               15                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16P LOSS MUTATED       42     10     14     34      8
  16P LOSS WILD-TYPE     96    102     62     72     46
D68V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       37     26     45
  16P LOSS WILD-TYPE     82    185    111
D68V8, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               37                 82
  CLUS_2               26                185
  CLUS_3               45                111
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       28     65     15
  16P LOSS WILD-TYPE    151    166     63
D68V9, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               28                151
  CLUS_2               65                166
  CLUS_3               15                 63
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        9     67     32
  16P LOSS WILD-TYPE     42    182    156
D68V10, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                9                 42
  CLUS_2               67                182
  CLUS_3               32                156
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED       28     56     11
  16P LOSS WILD-TYPE    127    136     67
D68V11, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1               28                127
  CLUS_2               56                136
  CLUS_3               11                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16P LOSS MUTATED        8     57     30
  16P LOSS WILD-TYPE     41    131    158
D68V12, multiclass
        clus
vv       16P LOSS MUTATED 16P LOSS WILD-TYPE
  CLUS_1                8                 41
  CLUS_2               57                131
  CLUS_3               30                158

Clustering(69) Variable = 16Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  16Q LOSS MUTATED        3      2      3      2
  16Q LOSS WILD-TYPE      2      7      9      4
D69V1, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2                2                  7
  CLUS_3                3                  9
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED        3      3      4
  16Q LOSS WILD-TYPE      4     10      8
D69V2, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                3                 10
  CLUS_3                4                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       64     37     36
  16Q LOSS WILD-TYPE    122    179     55
D69V3, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               64                122
  CLUS_2               37                179
  CLUS_3               36                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       45     49     24
  16Q LOSS WILD-TYPE     96     91    126
D69V4, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               45                 96
  CLUS_2               49                 91
  CLUS_3               24                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       28     15     29
  16Q LOSS WILD-TYPE     66     53     44
D69V5, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               28                 66
  CLUS_2               15                 53
  CLUS_3               29                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       35     16     21
  16Q LOSS WILD-TYPE     71     54     38
D69V6, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               35                 71
  CLUS_2               16                 54
  CLUS_3               21                 38
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  16Q LOSS MUTATED       59     15     16     39      8
  16Q LOSS WILD-TYPE     79     97     60     67     46
D69V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       52     35     50
  16Q LOSS WILD-TYPE     67    176    106
D69V8, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               52                 67
  CLUS_2               35                176
  CLUS_3               50                106
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       37     80     20
  16Q LOSS WILD-TYPE    142    151     58
D69V9, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               37                142
  CLUS_2               80                151
  CLUS_3               20                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       11     83     43
  16Q LOSS WILD-TYPE     40    166    145
D69V10, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               11                 40
  CLUS_2               83                166
  CLUS_3               43                145
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       33     69     14
  16Q LOSS WILD-TYPE    122    123     64
D69V11, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               33                122
  CLUS_2               69                123
  CLUS_3               14                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  16Q LOSS MUTATED       10     72     34
  16Q LOSS WILD-TYPE     39    116    154
D69V12, multiclass
        clus
vv       16Q LOSS MUTATED 16Q LOSS WILD-TYPE
  CLUS_1               10                 39
  CLUS_2               72                116
  CLUS_3               34                154

Clustering(70) Variable = 17P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17P LOSS MUTATED        3      5      4      4
  17P LOSS WILD-TYPE      2      4      8      2
D70V1, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2                5                  4
  CLUS_3                4                  8
  CLUS_4                4                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED        4      5      7
  17P LOSS WILD-TYPE      3      8      5
D70V2, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1                4                  3
  CLUS_2                5                  8
  CLUS_3                7                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED      111     55     40
  17P LOSS WILD-TYPE     75    161     51
D70V3, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1              111                 75
  CLUS_2               55                161
  CLUS_3               40                 51
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       56     77     46
  17P LOSS WILD-TYPE     85     63    104
D70V4, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               56                 85
  CLUS_2               77                 63
  CLUS_3               46                104
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       51     26     34
  17P LOSS WILD-TYPE     43     42     39
D70V5, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               51                 43
  CLUS_2               26                 42
  CLUS_3               34                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       62     25     24
  17P LOSS WILD-TYPE     44     45     35
D70V6, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               62                 44
  CLUS_2               25                 45
  CLUS_3               24                 35
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17P LOSS MUTATED       76     33     32     44     18
  17P LOSS WILD-TYPE     62     79     44     62     36
D70V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       67     73     63
  17P LOSS WILD-TYPE     52    138     93
D70V8, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               67                 52
  CLUS_2               73                138
  CLUS_3               63                 93
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       69    102     34
  17P LOSS WILD-TYPE    110    129     44
D70V9, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               69                110
  CLUS_2              102                129
  CLUS_3               34                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       19    111     75
  17P LOSS WILD-TYPE     32    138    113
D70V10, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               19                 32
  CLUS_2              111                138
  CLUS_3               75                113
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       61     85     31
  17P LOSS WILD-TYPE     94    107     47
D70V11, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               61                 94
  CLUS_2               85                107
  CLUS_3               31                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17P LOSS MUTATED       18     86     73
  17P LOSS WILD-TYPE     31    102    115
D70V12, multiclass
        clus
vv       17P LOSS MUTATED 17P LOSS WILD-TYPE
  CLUS_1               18                 31
  CLUS_2               86                102
  CLUS_3               73                115

Clustering(71) Variable = 17Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  17Q LOSS MUTATED        1      4      1      1
  17Q LOSS WILD-TYPE      4      5     11      5
D71V1, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                4                  5
  CLUS_3                1                 11
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        1      2      4
  17Q LOSS WILD-TYPE      6     11      8
D71V2, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                2                 11
  CLUS_3                4                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       30     10     15
  17Q LOSS WILD-TYPE    156    206     76
D71V3, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               30                156
  CLUS_2               10                206
  CLUS_3               15                 76
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       19     19      9
  17Q LOSS WILD-TYPE    122    121    141
D71V4, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               19                122
  CLUS_2               19                121
  CLUS_3                9                141
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       20      4      7
  17Q LOSS WILD-TYPE     74     64     66
D71V5, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               20                 74
  CLUS_2                4                 64
  CLUS_3                7                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       22      6      3
  17Q LOSS WILD-TYPE     84     64     56
D71V6, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               22                 84
  CLUS_2                6                 64
  CLUS_3                3                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  17Q LOSS MUTATED       23      7      9     11      5
  17Q LOSS WILD-TYPE    115    105     67     95     49
D71V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       19     18     18
  17Q LOSS WILD-TYPE    100    193    138
D71V8, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               19                100
  CLUS_2               18                193
  CLUS_3               18                138
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       18     24     12
  17Q LOSS WILD-TYPE    161    207     66
D71V9, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               18                161
  CLUS_2               24                207
  CLUS_3               12                 66
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        9     29     16
  17Q LOSS WILD-TYPE     42    220    172
D71V10, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                9                 42
  CLUS_2               29                220
  CLUS_3               16                172
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED       11     20     13
  17Q LOSS WILD-TYPE    144    172     65
D71V11, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1               11                144
  CLUS_2               20                172
  CLUS_3               13                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  17Q LOSS MUTATED        6     18     20
  17Q LOSS WILD-TYPE     43    170    168
D71V12, multiclass
        clus
vv       17Q LOSS MUTATED 17Q LOSS WILD-TYPE
  CLUS_1                6                 43
  CLUS_2               18                170
  CLUS_3               20                168

Clustering(72) Variable = 18P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18P LOSS MUTATED        2      4      2      3
  18P LOSS WILD-TYPE      3      5     10      3
D72V1, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                4                  5
  CLUS_3                2                 10
  CLUS_4                3                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED        3      3      5
  18P LOSS WILD-TYPE      4     10      7
D72V2, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                3                 10
  CLUS_3                5                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       88     55     26
  18P LOSS WILD-TYPE     98    161     65
D72V3, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               88                 98
  CLUS_2               55                161
  CLUS_3               26                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       51     48     48
  18P LOSS WILD-TYPE     90     92    102
D72V4, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               51                 90
  CLUS_2               48                 92
  CLUS_3               48                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       41     17     30
  18P LOSS WILD-TYPE     53     51     43
D72V5, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               41                 53
  CLUS_2               17                 51
  CLUS_3               30                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       50     15     23
  18P LOSS WILD-TYPE     56     55     36
D72V6, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               50                 56
  CLUS_2               15                 55
  CLUS_3               23                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18P LOSS MUTATED       60     33     30     30     13
  18P LOSS WILD-TYPE     78     79     46     76     41
D72V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       54     58     54
  18P LOSS WILD-TYPE     65    153    102
D72V8, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               54                 65
  CLUS_2               58                153
  CLUS_3               54                102
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       49     83     34
  18P LOSS WILD-TYPE    130    148     44
D72V9, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               49                130
  CLUS_2               83                148
  CLUS_3               34                 44
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       19     87     60
  18P LOSS WILD-TYPE     32    162    128
D72V10, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               19                 32
  CLUS_2               87                162
  CLUS_3               60                128
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       43     71     29
  18P LOSS WILD-TYPE    112    121     49
D72V11, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               43                112
  CLUS_2               71                121
  CLUS_3               29                 49
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18P LOSS MUTATED       17     66     60
  18P LOSS WILD-TYPE     32    122    128
D72V12, multiclass
        clus
vv       18P LOSS MUTATED 18P LOSS WILD-TYPE
  CLUS_1               17                 32
  CLUS_2               66                122
  CLUS_3               60                128

Clustering(73) Variable = 18Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  18Q LOSS MUTATED        2      5      3      3
  18Q LOSS WILD-TYPE      3      4      9      3
D73V1, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                5                  4
  CLUS_3                3                  9
  CLUS_4                3                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED        3      4      6
  18Q LOSS WILD-TYPE      4      9      6
D73V2, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                4                  9
  CLUS_3                6                  6
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED      113     68     26
  18Q LOSS WILD-TYPE     73    148     65
D73V3, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1              113                 73
  CLUS_2               68                148
  CLUS_3               26                 65
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       59     62     61
  18Q LOSS WILD-TYPE     82     78     89
D73V4, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               59                 82
  CLUS_2               62                 78
  CLUS_3               61                 89
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       54     21     34
  18Q LOSS WILD-TYPE     40     47     39
D73V5, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               54                 40
  CLUS_2               21                 47
  CLUS_3               34                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       63     20     26
  18Q LOSS WILD-TYPE     43     50     33
D73V6, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               63                 43
  CLUS_2               20                 50
  CLUS_3               26                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  18Q LOSS MUTATED       79     39     33     33     20
  18Q LOSS WILD-TYPE     59     73     43     73     34
D73V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       65     81     58
  18Q LOSS WILD-TYPE     54    130     98
D73V8, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               65                 54
  CLUS_2               81                130
  CLUS_3               58                 98
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       64     98     42
  18Q LOSS WILD-TYPE    115    133     36
D73V9, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               64                115
  CLUS_2               98                133
  CLUS_3               42                 36
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       21    104     79
  18Q LOSS WILD-TYPE     30    145    109
D73V10, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               21                 30
  CLUS_2              104                145
  CLUS_3               79                109
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       61     82     35
  18Q LOSS WILD-TYPE     94    110     43
D73V11, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               61                 94
  CLUS_2               82                110
  CLUS_3               35                 43
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  18Q LOSS MUTATED       21     82     75
  18Q LOSS WILD-TYPE     28    106    113
D73V12, multiclass
        clus
vv       18Q LOSS MUTATED 18Q LOSS WILD-TYPE
  CLUS_1               21                 28
  CLUS_2               82                106
  CLUS_3               75                113

Clustering(74) Variable = 19P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19P LOSS MUTATED        1      4      4      3
  19P LOSS WILD-TYPE      4      5      8      3
D74V1, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                4                  5
  CLUS_3                4                  8
  CLUS_4                3                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED        3      5      4
  19P LOSS WILD-TYPE      4      8      8
D74V2, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                5                  8
  CLUS_3                4                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       99     74     62
  19P LOSS WILD-TYPE     87    142     29
D74V3, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               99                 87
  CLUS_2               74                142
  CLUS_3               62                 29
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       96     60     44
  19P LOSS WILD-TYPE     45     80    106
D74V4, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               96                 45
  CLUS_2               60                 80
  CLUS_3               44                106
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       46     31     42
  19P LOSS WILD-TYPE     48     37     31
D74V5, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               46                 48
  CLUS_2               31                 37
  CLUS_3               42                 31
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       54     32     33
  19P LOSS WILD-TYPE     52     38     26
D74V6, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               54                 52
  CLUS_2               32                 38
  CLUS_3               33                 26
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19P LOSS MUTATED       63     39     42     73     17
  19P LOSS WILD-TYPE     75     73     34     33     37
D74V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       55     77    102
  19P LOSS WILD-TYPE     64    134     54
D74V8, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               55                 64
  CLUS_2               77                134
  CLUS_3              102                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       65    134     31
  19P LOSS WILD-TYPE    114     97     47
D74V9, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               65                114
  CLUS_2              134                 97
  CLUS_3               31                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       15    147     68
  19P LOSS WILD-TYPE     36    102    120
D74V10, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               15                 36
  CLUS_2              147                102
  CLUS_3               68                120
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       60    106     33
  19P LOSS WILD-TYPE     95     86     45
D74V11, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               60                 95
  CLUS_2              106                 86
  CLUS_3               33                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19P LOSS MUTATED       18    112     69
  19P LOSS WILD-TYPE     31     76    119
D74V12, multiclass
        clus
vv       19P LOSS MUTATED 19P LOSS WILD-TYPE
  CLUS_1               18                 31
  CLUS_2              112                 76
  CLUS_3               69                119

Clustering(75) Variable = 19Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  19Q LOSS MUTATED        0      3      3      3
  19Q LOSS WILD-TYPE      5      6      9      3
D75V1, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                0                  5
  CLUS_2                3                  6
  CLUS_3                3                  9
  CLUS_4                3                  3
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED        3      4      2
  19Q LOSS WILD-TYPE      4      9     10
D75V2, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                4                  9
  CLUS_3                2                 10
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       76     39     38
  19Q LOSS WILD-TYPE    110    177     53
D75V3, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               76                110
  CLUS_2               39                177
  CLUS_3               38                 53
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       60     47     23
  19Q LOSS WILD-TYPE     81     93    127
D75V4, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               60                 81
  CLUS_2               47                 93
  CLUS_3               23                127
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       36     18     26
  19Q LOSS WILD-TYPE     58     50     47
D75V5, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               36                 58
  CLUS_2               18                 50
  CLUS_3               26                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       42     19     19
  19Q LOSS WILD-TYPE     64     51     40
D75V6, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               42                 64
  CLUS_2               19                 51
  CLUS_3               19                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  19Q LOSS MUTATED       48     23     22     50     10
  19Q LOSS WILD-TYPE     90     89     54     56     44
D75V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       43     46     64
  19Q LOSS WILD-TYPE     76    165     92
D75V8, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               43                 76
  CLUS_2               46                165
  CLUS_3               64                 92
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       38     89     22
  19Q LOSS WILD-TYPE    141    142     56
D75V9, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               38                141
  CLUS_2               89                142
  CLUS_3               22                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       12     98     39
  19Q LOSS WILD-TYPE     39    151    149
D75V10, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               12                 39
  CLUS_2               98                151
  CLUS_3               39                149
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       36     70     22
  19Q LOSS WILD-TYPE    119    122     56
D75V11, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               36                119
  CLUS_2               70                122
  CLUS_3               22                 56
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  19Q LOSS MUTATED       13     75     40
  19Q LOSS WILD-TYPE     36    113    148
D75V12, multiclass
        clus
vv       19Q LOSS MUTATED 19Q LOSS WILD-TYPE
  CLUS_1               13                 36
  CLUS_2               75                113
  CLUS_3               40                148

Clustering(76) Variable = 20P LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20P LOSS MUTATED        3      4      2      2
  20P LOSS WILD-TYPE      2      5     10      4
D76V1, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2                4                  5
  CLUS_3                2                 10
  CLUS_4                2                  4
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED        3      3      5
  20P LOSS WILD-TYPE      4     10      7
D76V2, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1                3                  4
  CLUS_2                3                 10
  CLUS_3                5                  7
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       61     35     18
  20P LOSS WILD-TYPE    125    181     73
D76V3, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               61                125
  CLUS_2               35                181
  CLUS_3               18                 73
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       27     46     26
  20P LOSS WILD-TYPE    114     94    124
D76V4, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               27                114
  CLUS_2               46                 94
  CLUS_3               26                124
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       35      8     15
  20P LOSS WILD-TYPE     59     60     58
D76V5, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               35                 59
  CLUS_2                8                 60
  CLUS_3               15                 58
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       37      9     12
  20P LOSS WILD-TYPE     69     61     47
D76V6, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               37                 69
  CLUS_2                9                 61
  CLUS_3               12                 47
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20P LOSS MUTATED       45     24     19     15     11
  20P LOSS WILD-TYPE     93     88     57     91     43
D76V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       38     44     32
  20P LOSS WILD-TYPE     81    167    124
D76V8, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               38                 81
  CLUS_2               44                167
  CLUS_3               32                124
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       40     54     18
  20P LOSS WILD-TYPE    139    177     60
D76V9, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               40                139
  CLUS_2               54                177
  CLUS_3               18                 60
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       12     58     42
  20P LOSS WILD-TYPE     39    191    146
D76V10, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               12                 39
  CLUS_2               58                191
  CLUS_3               42                146
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       39     46     11
  20P LOSS WILD-TYPE    116    146     67
D76V11, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               39                116
  CLUS_2               46                146
  CLUS_3               11                 67
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20P LOSS MUTATED       10     41     45
  20P LOSS WILD-TYPE     39    147    143
D76V12, multiclass
        clus
vv       20P LOSS MUTATED 20P LOSS WILD-TYPE
  CLUS_1               10                 39
  CLUS_2               41                147
  CLUS_3               45                143

Clustering(77) Variable = 20Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  20Q LOSS MUTATED        2      4      2      1
  20Q LOSS WILD-TYPE      3      5     10      5
D77V1, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                  3
  CLUS_2                4                  5
  CLUS_3                2                 10
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        2      3      4
  20Q LOSS WILD-TYPE      5     10      8
D77V2, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                2                  5
  CLUS_2                3                 10
  CLUS_3                4                  8
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       30     25     12
  20Q LOSS WILD-TYPE    156    191     79
D77V3, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               30                156
  CLUS_2               25                191
  CLUS_3               12                 79
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       20     19     16
  20Q LOSS WILD-TYPE    121    121    134
D77V4, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               20                121
  CLUS_2               19                121
  CLUS_3               16                134
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       18      7      9
  20Q LOSS WILD-TYPE     76     61     64
D77V5, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               18                 76
  CLUS_2                7                 61
  CLUS_3                9                 64
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       16      9      9
  20Q LOSS WILD-TYPE     90     61     50
D77V6, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               16                 90
  CLUS_2                9                 61
  CLUS_3                9                 50
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  20Q LOSS MUTATED       18     20     10     14      5
  20Q LOSS WILD-TYPE    120     92     66     92     49
D77V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       16     30     21
  20Q LOSS WILD-TYPE    103    181    135
D77V8, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               16                103
  CLUS_2               30                181
  CLUS_3               21                135
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       27     32      8
  20Q LOSS WILD-TYPE    152    199     70
D77V9, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               27                152
  CLUS_2               32                199
  CLUS_3                8                 70
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        6     36     25
  20Q LOSS WILD-TYPE     45    213    163
D77V10, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                6                 45
  CLUS_2               36                213
  CLUS_3               25                163
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED       24     25      5
  20Q LOSS WILD-TYPE    131    167     73
D77V11, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1               24                131
  CLUS_2               25                167
  CLUS_3                5                 73
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  20Q LOSS MUTATED        5     25     24
  20Q LOSS WILD-TYPE     44    163    164
D77V12, multiclass
        clus
vv       20Q LOSS MUTATED 20Q LOSS WILD-TYPE
  CLUS_1                5                 44
  CLUS_2               25                163
  CLUS_3               24                164

Clustering(78) Variable = 21Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  21Q LOSS MUTATED        1      2      2      4
  21Q LOSS WILD-TYPE      4      7     10      2
D78V1, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                1                  4
  CLUS_2                2                  7
  CLUS_3                2                 10
  CLUS_4                4                  2
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        4      2      3
  21Q LOSS WILD-TYPE      3     11      9
D78V2, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                4                  3
  CLUS_2                2                 11
  CLUS_3                3                  9
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       50     56     51
  21Q LOSS WILD-TYPE    136    160     40
D78V3, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               50                136
  CLUS_2               56                160
  CLUS_3               51                 40
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       52     43     35
  21Q LOSS WILD-TYPE     89     97    115
D78V4, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               52                 89
  CLUS_2               43                 97
  CLUS_3               35                115
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       26     21     34
  21Q LOSS WILD-TYPE     68     47     39
D78V5, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               26                 68
  CLUS_2               21                 47
  CLUS_3               34                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       28     22     31
  21Q LOSS WILD-TYPE     78     48     28
D78V6, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               28                 78
  CLUS_2               22                 48
  CLUS_3               31                 28
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  21Q LOSS MUTATED       40     14     30     58     11
  21Q LOSS WILD-TYPE     98     98     46     48     43
D78V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       33     42     78
  21Q LOSS WILD-TYPE     86    169     78
D78V8, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               33                 86
  CLUS_2               42                169
  CLUS_3               78                 78
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       39     92     23
  21Q LOSS WILD-TYPE    140    139     55
D78V9, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               39                140
  CLUS_2               92                139
  CLUS_3               23                 55
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        9    105     40
  21Q LOSS WILD-TYPE     42    144    148
D78V10, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                9                 42
  CLUS_2              105                144
  CLUS_3               40                148
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED       34     72     24
  21Q LOSS WILD-TYPE    121    120     54
D78V11, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1               34                121
  CLUS_2               72                120
  CLUS_3               24                 54
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  21Q LOSS MUTATED        8     74     48
  21Q LOSS WILD-TYPE     41    114    140
D78V12, multiclass
        clus
vv       21Q LOSS MUTATED 21Q LOSS WILD-TYPE
  CLUS_1                8                 41
  CLUS_2               74                114
  CLUS_3               48                140

Clustering(79) Variable = 22Q LOSS MUTATION ANALYSIS
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4
  22Q LOSS MUTATED        3      5      2      1
  22Q LOSS WILD-TYPE      2      4     10      5
D79V1, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                3                  2
  CLUS_2                5                  4
  CLUS_3                2                 10
  CLUS_4                1                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED        1      3      7
  22Q LOSS WILD-TYPE      6     10      5
D79V2, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1                1                  6
  CLUS_2                3                 10
  CLUS_3                7                  5
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       94     60     58
  22Q LOSS WILD-TYPE     92    156     33
D79V3, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               94                 92
  CLUS_2               60                156
  CLUS_3               58                 33
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       70     74     43
  22Q LOSS WILD-TYPE     71     66    107
D79V4, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               70                 71
  CLUS_2               74                 66
  CLUS_3               43                107
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       43     28     34
  22Q LOSS WILD-TYPE     51     40     39
D79V5, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               43                 51
  CLUS_2               28                 40
  CLUS_3               34                 39
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       49     24     32
  22Q LOSS WILD-TYPE     57     46     27
D79V6, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               49                 57
  CLUS_2               24                 46
  CLUS_3               32                 27
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  22Q LOSS MUTATED       70     30     34     63     11
  22Q LOSS WILD-TYPE     68     82     42     43     43
D79V7, multiclass
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       59     62     87
  22Q LOSS WILD-TYPE     60    149     69
D79V8, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               59                 60
  CLUS_2               62                149
  CLUS_3               87                 69
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       56    119     33
  22Q LOSS WILD-TYPE    123    112     45
D79V9, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               56                123
  CLUS_2              119                112
  CLUS_3               33                 45
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       12    134     62
  22Q LOSS WILD-TYPE     39    115    126
D79V10, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               12                 39
  CLUS_2              134                115
  CLUS_3               62                126
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       54    103     26
  22Q LOSS WILD-TYPE    101     89     52
D79V11, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               54                101
  CLUS_2              103                 89
  CLUS_3               26                 52
                    vv
clus                 CLUS_1 CLUS_2 CLUS_3
  22Q LOSS MUTATED       16    104     63
  22Q LOSS WILD-TYPE     33     84    125
D79V12, multiclass
        clus
vv       22Q LOSS MUTATED 22Q LOSS WILD-TYPE
  CLUS_1               16                 33
  CLUS_2              104                 84
  CLUS_3               63                125

Clustering(80) Variable = XQ LOSS MUTATION ANALYSIS
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4
  XQ LOSS MUTATED        1      0      2      2
  XQ LOSS WILD-TYPE      4      9     10      4
D80V1, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               1                 4
  CLUS_2               0                 9
  CLUS_3               2                10
  CLUS_4               2                 4
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3      2      0
  XQ LOSS WILD-TYPE      4     11     12
D80V2, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                 4
  CLUS_2               2                11
  CLUS_3               0                12
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       36     15     13
  XQ LOSS WILD-TYPE    150    201     78
D80V3, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              36               150
  CLUS_2              15               201
  CLUS_3              13                78
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       23     25      9
  XQ LOSS WILD-TYPE    118    115    141
D80V4, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              23               118
  CLUS_2              25               115
  CLUS_3               9               141
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       12      5     10
  XQ LOSS WILD-TYPE     82     63     63
D80V5, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              12                82
  CLUS_2               5                63
  CLUS_3              10                63
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       15      5      7
  XQ LOSS WILD-TYPE     91     65     52
D80V6, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              15                91
  CLUS_2               5                65
  CLUS_3               7                52
                   vv
clus                CLUS_1 CLUS_2 CLUS_3 CLUS_4 CLUS_5
  XQ LOSS MUTATED       21     17      9     14      3
  XQ LOSS WILD-TYPE    117     95     67     92     51
D80V7, multiclass
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       21     23     20
  XQ LOSS WILD-TYPE     98    188    136
D80V8, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              21                98
  CLUS_2              23               188
  CLUS_3              20               136
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       21     35      7
  XQ LOSS WILD-TYPE    158    196     71
D80V9, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              21               158
  CLUS_2              35               196
  CLUS_3               7                71
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        3     36     24
  XQ LOSS WILD-TYPE     48    213    164
D80V10, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               3                48
  CLUS_2              36               213
  CLUS_3              24               164
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED       18     30      9
  XQ LOSS WILD-TYPE    137    162     69
D80V11, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1              18               137
  CLUS_2              30               162
  CLUS_3               9                69
                   vv
clus                CLUS_1 CLUS_2 CLUS_3
  XQ LOSS MUTATED        4     30     23
  XQ LOSS WILD-TYPE     45    158    165
D80V12, multiclass
        clus
vv       XQ LOSS MUTATED XQ LOSS WILD-TYPE
  CLUS_1               4                45
  CLUS_2              30               158
  CLUS_3              23               165
> q(save="no")
